AlfalfaGEDB | Msa1293960

M. sativa cultivar zhongmu-4 / Msa1293960

KEGG: K08852
GO: GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005975 GO:0006020 GO:0006066 GO:0006139 GO:0006396 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016043 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019538 GO:0019751 GO:0019898 GO:0022607 GO:0023052 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031312 GO:0031505 GO:0031984 GO:0033036 GO:0033365 GO:0033554 GO:0034067 GO:0034613 GO:0034620 GO:0034641 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036290 GO:0042175 GO:0042221 GO:0042406 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045229 GO:0046483 GO:0046677 GO:0046777 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051179 GO:0051259 GO:0051260 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0098542 GO:0098827 GO:0140096 GO:0140098 GO:1901360 GO:1901564 GO:1901615 GO:1901700
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293960	XP_003629104.2	95.278	826	39	0	18	843	19	844	0.0	1638

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293960	sp\|Q9C5S2\|IRE1A_ARATH	66.516	442	140	4	408	843	397	836	0.0	604
Msa1293960	sp\|Q9C5S2\|IRE1A_ARATH	29.060	234	110	10	31	249	41	233	3.92e-13	77.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293960	G7L8P6	95.278	826	39	0	18	843	19	844	0.0	1638

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293960	MtrunA17_Chr8g0370241	95.278	826	39	0	18	843	19	844	0.0	1638
Msa1293960	MtrunA17_Chr5g0407261	78.322	429	92	1	415	843	473	900	0.0	707
Msa1293960	MtrunA17_Chr5g0407261	44.957	347	136	11	45	360	62	384	6.35e-74	259
Msa1293960	MtrunA17_Chr8g0369971	52.571	700	210	18	20	698	17	615	0.0	640
Msa1293960	MtrunA17_Chr7g0272841	26.592	267	151	7	448	709	104	330	2.11e-19	93.2
Msa1293960	MtrunA17_Chr1g0205931	25.094	267	155	8	449	710	92	318	1.25e-18	90.9
Msa1293960	MtrunA17_Chr4g0042731	27.733	375	202	14	355	706	71	399	3.28e-18	88.2
Msa1293960	MtrunA17_Chr4g0059121	32.653	196	117	8	517	706	124	310	8.72e-17	82.8
Msa1293960	MtrunA17_Chr4g0063881	28.443	334	179	16	418	739	6	291	1.09e-16	83.6
Msa1293960	MtrunA17_Chr3g0117731	31.771	192	116	8	520	705	126	308	9.63e-16	79.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293960	AT2G17520.1	66.516	442	140	4	408	843	397	836	0.0	604
Msa1293960	AT2G17520.1	29.060	234	110	10	31	249	41	233	3.98e-14	77.0
Msa1293960	AT5G24360.1	60.455	440	166	5	405	842	442	875	2.60e-179	539
Msa1293960	AT5G24360.3	60.455	440	166	5	405	842	428	861	4.25e-179	538
Msa1293960	AT5G24360.2	60.455	440	166	5	405	842	448	881	6.01e-179	538
Msa1293960	AT3G11870.1	45.111	450	204	17	422	843	119	553	1.28e-101	326
Msa1293960	AT3G06030.1	26.316	266	152	8	448	709	104	329	1.73e-20	97.1
Msa1293960	AT1G09000.2	26.515	264	150	8	450	709	107	330	7.63e-18	88.6
Msa1293960	AT1G09000.1	26.515	264	150	8	450	709	107	330	9.08e-18	88.6
Msa1293960	AT1G54960.1	25.940	266	151	8	449	709	105	329	1.75e-17	87.8

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Find 186 sgRNAs with CRISPR-Local

Find 632 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAAACAATACATC+AGG	0.526603	8_3:-51567500	None:intergenic
AAACATTGTCCGATGGCATG+GGG	0.650157	8_3:+51567811	Msa1293960:CDS
AAAGCTAAATTCATCAGAGC+CGG	0.574728	8_3:+51567001	Msa1293960:CDS
AAAGGTGCGGAAGCATTATC+AGG	0.388359	8_3:-51566912	None:intergenic
AAATACAACGTTCCAGTGCA+AGG	0.605391	8_3:-51567859	None:intergenic
AAATTGAGGCCGCTGACTGA+AGG	0.544658	8_3:-51567164	None:intergenic
AACGGCCTTAGGTGGTAAAT+GGG	0.480156	8_3:+51571869	Msa1293960:CDS
AACTTTAATCAAGTTGATGA+AGG	0.509162	8_3:+51567602	Msa1293960:CDS
AAGAACTTTATTATCTGCAT+TGG	0.438343	8_3:-51566967	None:intergenic
AAGTAGCCATCGTATCCTTC+AGG	0.418215	8_3:-51573506	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATTTATCCACATGTTGTG+GGG	+	chr8_3:51565096-51565115	Msa1293960:intron	30.0%
TATCAAGCTCCTATCAATAA+AGG	+	chr8_3:51565458-51565477	Msa1293960:CDS	30.0%
AGTTTATTTAGAGGCTTACT+GGG	-	chr8_3:51565847-51565866	None:intergenic	30.0%
TAGTTTATTTAGAGGCTTAC+TGG	-	chr8_3:51565848-51565867	None:intergenic	30.0%
ATTCTTCAAATATGGTGAGA+GGG	-	chr8_3:51566026-51566045	None:intergenic	30.0%
AATTCTTCAAATATGGTGAG+AGG	-	chr8_3:51566027-51566046	None:intergenic	30.0%
AATGAACAATCATTCCAATG+TGG	-	chr8_3:51566057-51566076	None:intergenic	30.0%
ACTTGGCAATATCTACATTT+AGG	+	chr8_3:51566266-51566285	Msa1293960:intron	30.0%
CGAAATACAGAAAGGATAAA+AGG	-	chr8_3:51566471-51566490	None:intergenic	30.0%
CCATCGATAAAAAACATAGT+GGG	+	chr8_3:51566556-51566575	Msa1293960:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	51564795	51573824	51564795	ID=Msa1293960;Name=Msa1293960
chr8_3	mRNA	51564795	51573824	51564795	ID=Msa1293960-mRNA-1;Parent=Msa1293960;Name=Msa1293960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.85\|1\|1\|1\|7\|205\|843
chr8_3	exon	51564795	51564925	51564795	ID=Msa1293960-mRNA-1:exon:14395;Parent=Msa1293960-mRNA-1
chr8_3	exon	51565337	51565586	51565337	ID=Msa1293960-mRNA-1:exon:14396;Parent=Msa1293960-mRNA-1
chr8_3	exon	51566765	51568056	51566765	ID=Msa1293960-mRNA-1:exon:14397;Parent=Msa1293960-mRNA-1
chr8_3	exon	51568964	51569136	51568964	ID=Msa1293960-mRNA-1:exon:14398;Parent=Msa1293960-mRNA-1
chr8_3	exon	51570091	51570337	51570091	ID=Msa1293960-mRNA-1:exon:14399;Parent=Msa1293960-mRNA-1
chr8_3	exon	51571719	51572025	51571719	ID=Msa1293960-mRNA-1:exon:14400;Parent=Msa1293960-mRNA-1
chr8_3	exon	51573488	51573824	51573488	ID=Msa1293960-mRNA-1:exon:14401;Parent=Msa1293960-mRNA-1
chr8_3	CDS	51564795	51564925	51564795	ID=Msa1293960-mRNA-1:cds;Parent=Msa1293960-mRNA-1
chr8_3	CDS	51565337	51565586	51565337	ID=Msa1293960-mRNA-1:cds;Parent=Msa1293960-mRNA-1
chr8_3	CDS	51566765	51568056	51566765	ID=Msa1293960-mRNA-1:cds;Parent=Msa1293960-mRNA-1
chr8_3	CDS	51568964	51569136	51568964	ID=Msa1293960-mRNA-1:cds;Parent=Msa1293960-mRNA-1
chr8_3	CDS	51570091	51570337	51570091	ID=Msa1293960-mRNA-1:cds;Parent=Msa1293960-mRNA-1
chr8_3	CDS	51571719	51572025	51571719	ID=Msa1293960-mRNA-1:cds;Parent=Msa1293960-mRNA-1
chr8_3	CDS	51573488	51573619	51573488	ID=Msa1293960-mRNA-1:cds;Parent=Msa1293960-mRNA-1
chr8_3	three_prime_UTR	51573620	51573824	51573620	ID=Msa1293960-mRNA-1:three_prime_utr;Parent=Msa1293960-mRNA-1

Gene Sequence

>Msa1293960

ATGAAACTCTTCCTCTTCCTTCGGTTTCTGTTCCTTTTCTTCTTCTCGCTTTTCAATCAACACTGTTGCTGCGTCCATGCCCTTTCTCGCTCTCCAACAGCACGCTCCATTCTCTCTCTTCCTCCTCCTCCTAAGCAAGCAACATCACTGATTGCCACACTAGATGGGACCATGTATTTGGTGGCCAACCATGAGAATGGTCCCATGAGGATGATATGGTCATTCTACTCAGGATCGCCGATCTACAGTTCGTATCAAGCTCCTATCAATAAAGGTCGCACTAAAGGTAAAGAAAATGGATCTGCAGTGCCAGTTAGTGGGTTTATGGAATGCGGGGATGATTGGTCATTGTACATGCACGACGAGCACTACGGTAAAATGAGAATCTCAGAATCTATTGCAGAATTTGTACCTCGTACACCTACCATCTCACATGATGGAGCAATTATACTTGGATATAGAGAAATCACTTTGTTTGAAGTTGAAGTTAAAACTGGGTCGATCATTCGAATCCATGCCAAGCCTGATCCTGATAATGCTTCCGCACCTTTGAGTGATGACAGGAAGACCGCTAGAAGTATCACCAATGCAGATAATAAAGTTCTTGCTGATCCTGAAAAGCTAAATTCATCAGAGCCGGTGCTCAAGATTTTTAGGACAGATTATTTTCTGAAGTCTGTTAGCCCCAACTCAGGTATAGTATTATGGAATTTGAGAGTAGCTGAATTTGAGGCTGTATTATTATGCCAACATACTACATTTGAGGTAGAGGATGAAAATCCTTCAGTCAGCGGCCTCAATTTTACGATGCCTTACCCATGTCAAGAGATGCAAAAAGTCTTTCGCCTGAAAAAGAATTTTCTACTAGAACCTTCAATCACTGAAAGTTCACATGGAGCTTATCATGGAAATGATATACTCTTAATGCCTACTTCAGATATGATGATTCCATTGCAGCCTAATATTGATAGATTTTTCGATGGTCATGATGATAATATGATGATGCTTCCTATGCCTTTTCTGCAACAAAATGATGATACAACAGATGAACTCTTTCAGCCTCTCATTGAGATTGCTTCAAATTTGAACAAGAAGAGTGGATGGTCAACTCCATTACCTGATGTATTGTTTAGGGTTTTTGTTCTGGTTTTGGTCGTTTCAGTCATCATCTACTTTATTGCGGTGAAGTGGTTCAAGAATAATAGAGAAATATGGCCGAACTTTAATCAAGTTGATGAAGGTGTTGATGGACGAAGAATCGGAAAATTATTTGTTTCAAATAAAGAGATTGCTATAGGAAGCAATGGTACCATTATCTTTGATGGAAGATATGAAGGCCGATCAGTTGCAGTTAAGCGGCTTGTCAAAGCTCATCATAGTGTAGCCTCTAAAGAAATCCAAAACCTCATTGTGTCTGACTATCATCCAAACATTGTCCGATGGCATGGGGTGGAGCATGATCAAGATTTTATTTACCTTGCACTGGAACGTTGTATTTGCAACTTAGACGATTTGATTCAAATTTATTCAGATAGATCAGAAAATTCTGGTTTTATGAAGGACCAAGCATTCATATGTTTGATAAAGAGCCGAATGGAGACAGGGAATGATACTGCACAATATCTTTGGAAAGAAAATGGCTATCCATCACCTCTACTACTGAAATTGATGAGGGATATTGTTGCCGGGGTTGTTCATTTGCATGAATTAGGAATAATACATCGAGATTTGAAGCCCCAAAATGTTTTATTGATCAAGGAAAGATCCTTATGTGCAAAGCTTTCTGACATGGGCATTAGCAAACGTCTTCTTGATAACATGTCCTCTTTGGGTCATAGTGCTACTGGTGGGGGCAGTTCAGGTTGGCAAGCCCCAGAGCAGCTTGTTCAAGGACGCCAAACACGAGCTGTAGATATATTCAATTTAGGTTGTATTCTTTTTTTCTGCATGACTGGGGGAAAACATCCATTTGGACAACATCTTGAGCGTGATATCAATATAGTGAAGAATCGAAAAAATCTTTTCTTAGTGCAGTTCATTCCGGAAGCTGAGGATCTTATTAGCTGTTTATTAAACCCTGACCCTAATCTAAGGCCGAAAGCGATTGAAGTGTTGCAGCATCCTTTTTTCTGGAATTCCGAGACGAGACTTTCATTTTTACGTGACACCAGTGACAGGGTAGAACTGGAAGATAGAGATCTTCTTGGTTCTGATCTTTTGAGGGACTTAGAAAGCATTGCCACAACGGCCTTAGGTGGTAAATGGGATGAAAAGATGGAACCAGCTTTCATTGCTAACATTGGTCATTACCGGCGTTATAACTTTAACAGTGTTCGACACTTGTTGCGGGTTATGAGAAACAAGCTAAATCATTATGGAGAATTGCCACAGGAAATCCAGGAACTAGTTGGACCTGTTCCTGAAGGATACGATGGCTACTTTGCAAACCGATTCCCAAGACTCTTGATTGAAGTGTATAATGTTATATGCAAGCATTGCAAGGAGGAAGAGTGTTTTCAAAGGTATTTTTAA

Protein sequence

>Msa1293960

MKLFLFLRFLFLFFFSLFNQHCCCVHALSRSPTARSILSLPPPPKQATSLIATLDGTMYLVANHENGPMRMIWSFYSGSPIYSSYQAPINKGRTKGKENGSAVPVSGFMECGDDWSLYMHDEHYGKMRISESIAEFVPRTPTISHDGAIILGYREITLFEVEVKTGSIIRIHAKPDPDNASAPLSDDRKTARSITNADNKVLADPEKLNSSEPVLKIFRTDYFLKSVSPNSGIVLWNLRVAEFEAVLLCQHTTFEVEDENPSVSGLNFTMPYPCQEMQKVFRLKKNFLLEPSITESSHGAYHGNDILLMPTSDMMIPLQPNIDRFFDGHDDNMMMLPMPFLQQNDDTTDELFQPLIEIASNLNKKSGWSTPLPDVLFRVFVLVLVVSVIIYFIAVKWFKNNREIWPNFNQVDEGVDGRRIGKLFVSNKEIAIGSNGTIIFDGRYEGRSVAVKRLVKAHHSVASKEIQNLIVSDYHPNIVRWHGVEHDQDFIYLALERCICNLDDLIQIYSDRSENSGFMKDQAFICLIKSRMETGNDTAQYLWKENGYPSPLLLKLMRDIVAGVVHLHELGIIHRDLKPQNVLLIKERSLCAKLSDMGISKRLLDNMSSLGHSATGGGSSGWQAPEQLVQGRQTRAVDIFNLGCILFFCMTGGKHPFGQHLERDINIVKNRKNLFLVQFIPEAEDLISCLLNPDPNLRPKAIEVLQHPFFWNSETRLSFLRDTSDRVELEDRDLLGSDLLRDLESIATTALGGKWDEKMEPAFIANIGHYRRYNFNSVRHLLRVMRNKLNHYGELPQEIQELVGPVPEGYDGYFANRFPRLLIEVYNVICKHCKEEECFQRYF*