Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294010 | XP_003629108.2 | 89.796 | 490 | 2 | 2 | 1 | 490 | 1 | 442 | 0.0 | 887 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294010 | sp|Q45FA5|SRPK_PHYPO | 40.487 | 452 | 209 | 6 | 10 | 460 | 29 | 421 | 4.33e-106 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294010 | G7L8Q0 | 89.796 | 490 | 2 | 2 | 1 | 490 | 1 | 442 | 0.0 | 887 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294010 | MtrunA17_Chr8g0370321 | 89.796 | 490 | 2 | 2 | 1 | 490 | 1 | 442 | 0.0 | 887 |
| Msa1294010 | MtrunA17_Chr5g0407121 | 74.745 | 491 | 78 | 2 | 1 | 490 | 1 | 446 | 0.0 | 723 |
| Msa1294010 | MtrunA17_Chr1g0179611 | 44.938 | 563 | 187 | 8 | 2 | 486 | 8 | 525 | 4.73e-164 | 475 |
| Msa1294010 | MtrunA17_Chr4g0027671 | 44.563 | 561 | 178 | 9 | 12 | 486 | 13 | 526 | 1.97e-157 | 458 |
| Msa1294010 | MtrunA17_Chr2g0320631 | 46.014 | 276 | 126 | 3 | 228 | 486 | 253 | 522 | 1.28e-79 | 258 |
| Msa1294010 | MtrunA17_Chr2g0320631 | 47.126 | 261 | 80 | 3 | 6 | 253 | 8 | 223 | 9.86e-71 | 234 |
| Msa1294010 | MtrunA17_Chr3g0116701 | 29.176 | 425 | 206 | 15 | 62 | 459 | 64 | 420 | 3.96e-35 | 135 |
| Msa1294010 | MtrunA17_Chr3g0139371 | 30.387 | 362 | 183 | 12 | 106 | 458 | 97 | 398 | 1.17e-34 | 134 |
| Msa1294010 | MtrunA17_Chr4g0058241 | 29.009 | 424 | 212 | 15 | 62 | 461 | 68 | 426 | 1.12e-32 | 129 |
| Msa1294010 | MtrunA17_Chr3g0123491 | 28.438 | 320 | 160 | 9 | 100 | 412 | 103 | 360 | 2.28e-28 | 117 |
| Msa1294010 | MtrunA17_Chr6g0480541 | 32.738 | 168 | 99 | 5 | 297 | 458 | 1041 | 1200 | 1.36e-19 | 92.4 |
| Msa1294010 | MtrunA17_Chr5g0437131 | 31.098 | 164 | 101 | 4 | 299 | 458 | 550 | 705 | 4.77e-18 | 87.4 |
| Msa1294010 | MtrunA17_Chr8g0369241 | 29.891 | 184 | 96 | 7 | 55 | 225 | 114 | 277 | 2.52e-14 | 75.9 |
| Msa1294010 | MtrunA17_Chr8g0369241 | 39.815 | 108 | 58 | 3 | 299 | 405 | 285 | 386 | 1.85e-13 | 73.2 |
| Msa1294010 | MtrunA17_Chr1g0210061 | 32.609 | 184 | 91 | 8 | 299 | 461 | 757 | 928 | 4.81e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294010 | AT4G35500.1 | 66.327 | 490 | 109 | 4 | 1 | 487 | 1 | 437 | 0.0 | 643 |
| Msa1294010 | AT2G17530.1 | 66.462 | 489 | 109 | 4 | 1 | 487 | 1 | 436 | 0.0 | 630 |
| Msa1294010 | AT2G17530.3 | 66.462 | 489 | 109 | 4 | 1 | 487 | 1 | 436 | 0.0 | 630 |
| Msa1294010 | AT4G35500.2 | 65.510 | 490 | 114 | 6 | 1 | 487 | 1 | 438 | 0.0 | 627 |
| Msa1294010 | AT2G17530.2 | 69.251 | 387 | 72 | 3 | 1 | 385 | 1 | 342 | 2.45e-177 | 502 |
| Msa1294010 | AT3G53030.1 | 46.065 | 521 | 178 | 7 | 12 | 476 | 16 | 489 | 4.00e-158 | 459 |
| Msa1294010 | AT5G22840.1 | 45.211 | 522 | 184 | 5 | 4 | 473 | 11 | 482 | 8.52e-155 | 451 |
| Msa1294010 | AT3G44850.1 | 43.470 | 559 | 191 | 7 | 12 | 490 | 19 | 532 | 1.18e-152 | 446 |
| Msa1294010 | AT4G32660.1 | 28.650 | 363 | 189 | 9 | 106 | 458 | 94 | 396 | 8.33e-35 | 135 |
| Msa1294010 | AT4G32660.3 | 28.650 | 363 | 189 | 9 | 106 | 458 | 86 | 388 | 9.01e-35 | 134 |
| Msa1294010 | AT4G24740.7 | 28.571 | 427 | 210 | 14 | 62 | 461 | 30 | 388 | 9.16e-34 | 132 |
| Msa1294010 | AT4G24740.1 | 28.571 | 427 | 210 | 14 | 62 | 461 | 68 | 426 | 2.05e-33 | 131 |
| Msa1294010 | AT4G24740.6 | 29.156 | 391 | 184 | 14 | 96 | 461 | 1 | 323 | 2.38e-33 | 129 |
| Msa1294010 | AT4G24740.9 | 29.156 | 391 | 184 | 14 | 96 | 461 | 1 | 323 | 2.38e-33 | 129 |
| Msa1294010 | AT4G24740.2 | 29.156 | 391 | 184 | 14 | 96 | 461 | 1 | 323 | 2.38e-33 | 129 |
| Msa1294010 | AT3G53570.1 | 28.809 | 361 | 194 | 9 | 106 | 458 | 138 | 443 | 3.10e-31 | 126 |
| Msa1294010 | AT3G53570.4 | 28.809 | 361 | 194 | 9 | 106 | 458 | 138 | 443 | 3.10e-31 | 126 |
| Msa1294010 | AT3G53570.2 | 28.809 | 361 | 194 | 9 | 106 | 458 | 138 | 443 | 3.10e-31 | 126 |
| Msa1294010 | AT3G53570.3 | 28.809 | 361 | 194 | 9 | 106 | 458 | 124 | 429 | 3.40e-31 | 125 |
| Msa1294010 | AT3G53570.5 | 28.809 | 361 | 194 | 9 | 106 | 458 | 124 | 429 | 3.40e-31 | 125 |
| Msa1294010 | AT4G32660.2 | 29.492 | 295 | 150 | 7 | 106 | 400 | 94 | 330 | 4.02e-31 | 124 |
| Msa1294010 | AT4G32660.4 | 28.280 | 343 | 174 | 11 | 127 | 458 | 3 | 284 | 9.70e-30 | 118 |
| Msa1294010 | AT4G24740.5 | 30.976 | 297 | 141 | 9 | 96 | 385 | 1 | 240 | 1.63e-29 | 116 |
| Msa1294010 | AT4G24740.3 | 29.730 | 333 | 168 | 9 | 62 | 385 | 68 | 343 | 3.20e-29 | 118 |
| Msa1294010 | AT4G24740.4 | 29.431 | 299 | 151 | 8 | 62 | 351 | 68 | 315 | 2.06e-23 | 101 |
| Msa1294010 | AT1G73460.2 | 34.524 | 168 | 96 | 5 | 297 | 458 | 1001 | 1160 | 2.69e-21 | 98.2 |
| Msa1294010 | AT1G73460.1 | 34.524 | 168 | 96 | 5 | 297 | 458 | 1001 | 1160 | 2.69e-21 | 98.2 |
| Msa1294010 | AT1G73450.1 | 34.524 | 168 | 96 | 5 | 297 | 458 | 984 | 1143 | 3.05e-21 | 98.2 |
| Msa1294010 | AT4G24740.10 | 29.630 | 270 | 110 | 10 | 210 | 461 | 13 | 220 | 5.44e-20 | 89.0 |
| Msa1294010 | AT4G24740.8 | 29.630 | 270 | 110 | 10 | 210 | 461 | 13 | 220 | 5.44e-20 | 89.0 |
| Msa1294010 | AT2G40120.1 | 31.395 | 172 | 106 | 4 | 297 | 463 | 404 | 568 | 4.64e-19 | 90.5 |
| Msa1294010 | AT3G17750.1 | 31.953 | 169 | 101 | 5 | 297 | 459 | 970 | 1130 | 2.38e-17 | 85.9 |
| Msa1294010 | AT5G35980.2 | 32.540 | 126 | 79 | 3 | 106 | 230 | 145 | 265 | 7.71e-15 | 77.8 |
| Msa1294010 | AT5G35980.2 | 43.878 | 98 | 49 | 2 | 299 | 396 | 267 | 358 | 2.54e-14 | 76.3 |
| Msa1294010 | AT5G35980.3 | 32.540 | 126 | 79 | 3 | 106 | 230 | 110 | 230 | 8.36e-15 | 77.8 |
| Msa1294010 | AT5G35980.3 | 43.878 | 98 | 49 | 2 | 299 | 396 | 232 | 323 | 2.66e-14 | 76.3 |
| Msa1294010 | AT5G35980.1 | 31.469 | 143 | 85 | 4 | 96 | 230 | 128 | 265 | 8.58e-15 | 77.8 |
| Msa1294010 | AT5G35980.1 | 43.878 | 98 | 49 | 2 | 299 | 396 | 267 | 358 | 2.54e-14 | 76.3 |
| Msa1294010 | AT3G53640.1 | 31.148 | 183 | 96 | 6 | 299 | 461 | 470 | 642 | 4.37e-14 | 75.1 |
| Msa1294010 | AT1G13350.3 | 30.435 | 184 | 96 | 7 | 299 | 461 | 662 | 834 | 6.06e-13 | 72.0 |
| Msa1294010 | AT1G13350.1 | 30.435 | 184 | 96 | 7 | 299 | 461 | 589 | 761 | 7.26e-13 | 71.6 |
| Msa1294010 | AT1G13350.2 | 30.435 | 184 | 96 | 7 | 299 | 461 | 616 | 788 | 7.33e-13 | 71.6 |
| Msa1294010 | AT3G25840.2 | 31.694 | 183 | 94 | 7 | 299 | 461 | 502 | 673 | 1.68e-12 | 70.5 |
| Msa1294010 | AT3G25840.1 | 31.720 | 186 | 90 | 9 | 299 | 461 | 764 | 935 | 2.46e-12 | 70.1 |
Find 147 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATATTTCTATCAGAATT+TGG | 0.182704 | 8_3:-51636747 | None:intergenic |
| AATGTAAATCTTATTGAATT+TGG | 0.189427 | 8_3:-51638455 | None:intergenic |
| ATGTCTTGTTCTTCTTCATC+TGG | 0.217080 | 8_3:+51635132 | Msa1294010:CDS |
| GGATTCGGAGGCTAAAATTT+TGG | 0.237408 | 8_3:+51638104 | Msa1294010:CDS |
| TTCTGGACAAAGAGCTTCTA+TGG | 0.246761 | 8_3:+51636707 | Msa1294010:CDS |
| AGGGCGGTAGCTAAAATTTC+TGG | 0.265940 | 8_3:+51636690 | Msa1294010:CDS |
| CCATGAGCCAAGGGTGTTGC+AGG | 0.266108 | 8_3:-51638249 | None:intergenic |
| ATGAAATTGTGAGATTATTA+AGG | 0.267451 | 8_3:-51635017 | None:intergenic |
| AGATGCAAAGTGGTTGATTT+TGG | 0.275568 | 8_3:+51636783 | Msa1294010:CDS |
| GTACATAGCTCAGAGGAAAT+TGG | 0.318879 | 8_3:+51635242 | Msa1294010:CDS |
| CAGCATGGTATCCACCTTTC+CGG | 0.321046 | 8_3:-51635188 | None:intergenic |
| AAAACTTGAAAATGTTCTTC+TGG | 0.321760 | 8_3:+51636539 | Msa1294010:CDS |
| CCCTCAGGCCTCTCTAAAAT+CGG | 0.323007 | 8_3:-51636609 | None:intergenic |
| TCGAAATGTGAATGTGGATT+TGG | 0.330779 | 8_3:+51635658 | Msa1294010:CDS |
| GGATTTGGATTTCCTGCATT+TGG | 0.350321 | 8_3:+51635673 | Msa1294010:CDS |
| GCTAAAACCTTGTCCGACTT+TGG | 0.352838 | 8_3:-51636967 | None:intergenic |
| GTCTGAATTTCTTCCGCAAA+TGG | 0.355796 | 8_3:-51636828 | None:intergenic |
| AAATTTCTGTCAAATATCTA+TGG | 0.364734 | 8_3:-51638532 | None:intergenic |
| GATGTTTGAAATGGTGAAAT+TGG | 0.364772 | 8_3:+51635624 | Msa1294010:CDS |
| CTAAAACCTTGTCCGACTTT+GGG | 0.366642 | 8_3:-51636966 | None:intergenic |
| TTCCAAGGAGTTCCATCATC+AGG | 0.368239 | 8_3:-51637812 | None:intergenic |
| GGGGAGACTCCCGATCTAAC+AGG | 0.374226 | 8_3:-51636588 | None:intergenic |
| AAGTGCAGCGCAGTTTGTTC+AGG | 0.376553 | 8_3:+51636239 | Msa1294010:CDS |
| TCAATCAATAGTTTGTTAAG+AGG | 0.383534 | 8_3:-51638127 | None:intergenic |
| AGCTCAGAGGAAATTGGGTT+GGG | 0.387320 | 8_3:+51635248 | Msa1294010:CDS |
| ATGTTGAAGAGGGGACTTAG+AGG | 0.388043 | 8_3:-51638394 | None:intergenic |
| CGGTGGGAACACTACCTTCC+GGG | 0.395671 | 8_3:-51637841 | None:intergenic |
| TGCATGGTACTCGAATTTCT+TGG | 0.404519 | 8_3:+51636381 | Msa1294010:CDS |
| GATTGTTGTTGTTCTATTTG+TGG | 0.405910 | 8_3:-51634986 | None:intergenic |
| TCTGCAGTTGGTCGCTTCTC+AGG | 0.407969 | 8_3:-51638220 | None:intergenic |
| ATTGCTTTCGAGCTTGCCAC+TGG | 0.409835 | 8_3:+51636927 | Msa1294010:CDS |
| TGTCTTGTTCTTCTTCATCT+GGG | 0.422803 | 8_3:+51635133 | Msa1294010:CDS |
| GCTTAAAGTGGTCGATCAAT+TGG | 0.423698 | 8_3:-51636332 | None:intergenic |
| ATGCATTGGTGCTGGCCGTT+AGG | 0.428045 | 8_3:-51636363 | None:intergenic |
| GATTCATTTCTCATTTCATC+AGG | 0.430586 | 8_3:-51638286 | None:intergenic |
| TACATAGCTCAGAGGAAATT+GGG | 0.433819 | 8_3:+51635243 | Msa1294010:CDS |
| CTCTTAGCTTTGAGACCTCA+TGG | 0.438650 | 8_3:-51638602 | None:intergenic |
| ACACCCTTGGCTCATGGAAA+AGG | 0.460564 | 8_3:+51638255 | Msa1294010:CDS |
| ATCAAGGTGGGGAAGTGAAG+GGG | 0.461312 | 8_3:+51638349 | Msa1294010:exon |
| CCTCAGGCCTCTCTAAAATC+GGG | 0.463410 | 8_3:-51636608 | None:intergenic |
| GATATATGTGATGTTTGAAA+TGG | 0.463870 | 8_3:+51635615 | Msa1294010:CDS |
| AAGGTGGATACCATGCTGTC+CGG | 0.465806 | 8_3:+51635193 | Msa1294010:CDS |
| TCTGGTTTCTACTATCGATC+CGG | 0.469152 | 8_3:+51636557 | Msa1294010:CDS |
| GTCTTCCGATGAATAAAGTC+AGG | 0.469765 | 8_3:+51636445 | Msa1294010:CDS |
| AATTCTGATAGAAATATTGA+TGG | 0.472298 | 8_3:+51636750 | Msa1294010:CDS |
| AAAAGTTGAAAAGGAGAGCA+AGG | 0.476403 | 8_3:+51636667 | Msa1294010:CDS |
| AGAGCTTCTATGGGAGGAAT+GGG | 0.477776 | 8_3:+51636717 | Msa1294010:CDS |
| GGCAAAAGACCCTGTTAGAT+CGG | 0.478482 | 8_3:+51636578 | Msa1294010:CDS |
| TTAAGATATTCTCCAAATGC+AGG | 0.479622 | 8_3:-51635685 | None:intergenic |
| CCTGCAACACCCTTGGCTCA+TGG | 0.486242 | 8_3:+51638249 | Msa1294010:CDS |
| AAGAGCTTCTATGGGAGGAA+TGG | 0.488237 | 8_3:+51636716 | Msa1294010:CDS |
| ACGGGGATCTCAAAAGGATT+CGG | 0.490967 | 8_3:+51638089 | Msa1294010:CDS |
| AACTCCTTGGAAAGATGCCC+CGG | 0.491317 | 8_3:+51637823 | Msa1294010:CDS |
| CCAGCCTGCAGTATAACTTC+AGG | 0.494640 | 8_3:-51636867 | None:intergenic |
| ATTCCTTCTCCGTCGATATG+TGG | 0.494693 | 8_3:+51636892 | Msa1294010:CDS |
| ATGTTACAGGTTGCTACTGC+AGG | 0.497187 | 8_3:+51638037 | Msa1294010:intron |
| ACAGACACGGGGATCTCAAA+AGG | 0.497743 | 8_3:+51638083 | Msa1294010:CDS |
| AACAGTGCCTGCAACACCCT+TGG | 0.502041 | 8_3:+51638242 | Msa1294010:CDS |
| AATAAGCAACCTTAAAATCA+AGG | 0.503806 | 8_3:+51638333 | Msa1294010:CDS |
| TGCAGGCACTGTTCTGCAGT+TGG | 0.504517 | 8_3:-51638232 | None:intergenic |
| AGGCCTGAGGGAAACATAAA+CGG | 0.506847 | 8_3:+51636621 | Msa1294010:CDS |
| GCGCCGTTTATGTTTCCCTC+AGG | 0.507071 | 8_3:-51636624 | None:intergenic |
| CGAGTACCATGCATTGGTGC+TGG | 0.511219 | 8_3:-51636371 | None:intergenic |
| GAAATGGTGAAATTGGTGAA+TGG | 0.513031 | 8_3:+51635631 | Msa1294010:CDS |
| GCAAAAGACCCTGTTAGATC+GGG | 0.516130 | 8_3:+51636579 | Msa1294010:CDS |
| GTGATCAGTTCGCCGGTGGA+AGG | 0.518910 | 8_3:+51635220 | Msa1294010:CDS |
| TCAAGGTGGGGAAGTGAAGG+GGG | 0.520424 | 8_3:+51638350 | Msa1294010:exon |
| AGCTCCTGAAGTTATACTGC+AGG | 0.520770 | 8_3:+51636863 | Msa1294010:CDS |
| GTTCTTTCATCCATTGCTGA+TGG | 0.521395 | 8_3:+51636282 | Msa1294010:CDS |
| AAATCAAGGTGGGGAAGTGA+AGG | 0.521806 | 8_3:+51638347 | Msa1294010:CDS |
| AAAGTCAATAATGTTGAAGA+GGG | 0.523570 | 8_3:-51638404 | None:intergenic |
| TTGGTTTGGATTACTTGCAC+AGG | 0.529828 | 8_3:+51636490 | Msa1294010:CDS |
| AGGTGGATACCATGCTGTCC+GGG | 0.530748 | 8_3:+51635194 | Msa1294010:CDS |
| TTGCTTTCGAGCTTGCCACT+GGG | 0.531169 | 8_3:+51636928 | Msa1294010:CDS |
| ATGAAGGCTTTGATTCCTAC+CGG | 0.531226 | 8_3:+51635169 | Msa1294010:CDS |
| GGATCACCTTGCCCTGATGA+TGG | 0.535748 | 8_3:+51637800 | Msa1294010:intron |
| AGCAACCTTAAAATCAAGGT+GGG | 0.536200 | 8_3:+51638337 | Msa1294010:CDS |
| AGGATTTCTTCGACAGACAC+GGG | 0.536846 | 8_3:+51638071 | Msa1294010:CDS |
| TTGGGCTGATAAGCCATTTG+CGG | 0.537617 | 8_3:+51636815 | Msa1294010:CDS |
| TAGCTCAGAGGAAATTGGGT+TGG | 0.539063 | 8_3:+51635247 | Msa1294010:CDS |
| TGTTGAAGAGGGGACTTAGA+GGG | 0.540241 | 8_3:-51638393 | None:intergenic |
| AATCAAGGTGGGGAAGTGAA+GGG | 0.549534 | 8_3:+51638348 | Msa1294010:exon |
| ATGTTATTTACTCCCAAAGT+CGG | 0.550928 | 8_3:+51636954 | Msa1294010:CDS |
| TGGAGCATTGTTGAAGAGAG+AGG | 0.551987 | 8_3:+51634942 | Msa1294010:five_prime_UTR |
| CCTTCCGGGGCATCTTTCCA+AGG | 0.553985 | 8_3:-51637827 | None:intergenic |
| GATTACTTGCACAGGGAACA+TGG | 0.558222 | 8_3:+51636498 | Msa1294010:CDS |
| GTCGGTGATCAGTTCGCCGG+TGG | 0.559099 | 8_3:+51635216 | Msa1294010:CDS |
| AAAAGTCAATAATGTTGAAG+AGG | 0.559375 | 8_3:-51638405 | None:intergenic |
| TGAAGGGGCGCCATCAGCAA+TGG | 0.565495 | 8_3:-51636292 | None:intergenic |
| GTTGAAAAGGAGAGCAAGGA+GGG | 0.566829 | 8_3:+51636671 | Msa1294010:CDS |
| TCTGGACAAAGAGCTTCTAT+GGG | 0.567262 | 8_3:+51636708 | Msa1294010:CDS |
| CGGCGAACTGATCACCGACC+CGG | 0.567799 | 8_3:-51635212 | None:intergenic |
| AAGGATTTCTTCGACAGACA+CGG | 0.569862 | 8_3:+51638070 | Msa1294010:CDS |
| GGCTTTGATTCCTACCGGAA+AGG | 0.573918 | 8_3:+51635174 | Msa1294010:CDS |
| ATCTCCCTGACTTTATTCAT+CGG | 0.573932 | 8_3:-51636450 | None:intergenic |
| GGATTGAGAACATACATCGT+TGG | 0.574635 | 8_3:-51635307 | None:intergenic |
| GCTTTGAGACCTCATGGAGG+AGG | 0.574786 | 8_3:-51638596 | None:intergenic |
| GTGTCTGTCGAAGAAATCCT+TGG | 0.579045 | 8_3:-51638068 | None:intergenic |
| GAAATTCGAGTACCATGCAT+TGG | 0.579276 | 8_3:-51636377 | None:intergenic |
| ATTCTGATAGAAATATTGAT+GGG | 0.582335 | 8_3:+51636751 | Msa1294010:CDS |
| TTTACTCCCAAAGTCGGACA+AGG | 0.591377 | 8_3:+51636960 | Msa1294010:CDS |
| TCCAAGGAGTTCCATCATCA+GGG | 0.591920 | 8_3:-51637811 | None:intergenic |
| TCATCGGAAGACCTTTGTAA+CGG | 0.595143 | 8_3:-51636434 | None:intergenic |
| CGGGTCGGTGATCAGTTCGC+CGG | 0.595542 | 8_3:+51635213 | Msa1294010:CDS |
| TAGGACCTGTGTGCTTAAAG+TGG | 0.596811 | 8_3:-51636344 | None:intergenic |
| GGGTCTGAAGATGATGATGA+AGG | 0.603847 | 8_3:+51635153 | Msa1294010:CDS |
| GGATACCATGCTGTCCGGGT+CGG | 0.605762 | 8_3:+51635198 | Msa1294010:CDS |
| TTTAAGCACACAGGTCCTAA+CGG | 0.605824 | 8_3:+51636348 | Msa1294010:CDS |
| CTGAGCTATGTACCTTCCAC+CGG | 0.605904 | 8_3:-51635232 | None:intergenic |
| AGACCACATATCGACGGAGA+AGG | 0.607795 | 8_3:-51636895 | None:intergenic |
| AGTATCAAAAGCAAGCCAAA+CGG | 0.608489 | 8_3:-51635283 | None:intergenic |
| ATGGTATCCACCTTTCCGGT+AGG | 0.608525 | 8_3:-51635184 | None:intergenic |
| AATGAGAAATGAATCTAGTG+TGG | 0.608814 | 8_3:+51638294 | Msa1294010:CDS |
| GCCCTGATGATGGAACTCCT+TGG | 0.613944 | 8_3:+51637810 | Msa1294010:CDS |
| GCTCAGAGGAAATTGGGTTG+GGG | 0.614301 | 8_3:+51635249 | Msa1294010:CDS |
| TTTGATTCCTACCGGAAAGG+TGG | 0.616024 | 8_3:+51635177 | Msa1294010:CDS |
| CCTGAAGTTATACTGCAGGC+TGG | 0.616462 | 8_3:+51636867 | Msa1294010:CDS |
| GTCAGATACAACCGTTACAA+AGG | 0.617545 | 8_3:+51636423 | Msa1294010:CDS |
| TCAGGTGCAAAATCAAGAAG+AGG | 0.619046 | 8_3:-51638202 | None:intergenic |
| TGCTTTCGAGCTTGCCACTG+GGG | 0.622478 | 8_3:+51636929 | Msa1294010:CDS |
| GATCACCGACCCGGACAGCA+TGG | 0.622696 | 8_3:-51635203 | None:intergenic |
| TGGTTTGGATTACTTGCACA+GGG | 0.627031 | 8_3:+51636491 | Msa1294010:CDS |
| GGGAGACTCCCGATCTAACA+GGG | 0.627241 | 8_3:-51636587 | None:intergenic |
| GGTCATTCGAAATGTGAATG+TGG | 0.631809 | 8_3:+51635652 | Msa1294010:CDS |
| TAACGGCCAGCACCAATGCA+TGG | 0.636403 | 8_3:+51636365 | Msa1294010:CDS |
| GGAGTTCCATCATCAGGGCA+AGG | 0.636676 | 8_3:-51637806 | None:intergenic |
| CTCAGGCCTCTCTAAAATCG+GGG | 0.638151 | 8_3:-51636607 | None:intergenic |
| GTGTATATGACATTCATCCA+AGG | 0.639970 | 8_3:+51638557 | Msa1294010:three_prime_UTR |
| ATCGACCACTTTAAGCACAC+AGG | 0.642901 | 8_3:+51636339 | Msa1294010:CDS |
| GCAACCTTAAAATCAAGGTG+GGG | 0.643577 | 8_3:+51638338 | Msa1294010:CDS |
| AGCAAAAGACCACATATCGA+CGG | 0.644032 | 8_3:-51636901 | None:intergenic |
| GGTGGGAACACTACCTTCCG+GGG | 0.647201 | 8_3:-51637840 | None:intergenic |
| CCTTGGAAAGATGCCCCGGA+AGG | 0.648843 | 8_3:+51637827 | Msa1294010:CDS |
| AAGCAACCTTAAAATCAAGG+TGG | 0.649106 | 8_3:+51638336 | Msa1294010:CDS |
| GGACAAAGAGCTTCTATGGG+AGG | 0.655170 | 8_3:+51636711 | Msa1294010:CDS |
| GGGATCTCAAAAGGATTCGG+AGG | 0.658136 | 8_3:+51638092 | Msa1294010:CDS |
| GGATTTCTTCGACAGACACG+GGG | 0.676658 | 8_3:+51638072 | Msa1294010:CDS |
| TCTTCCGATGAATAAAGTCA+GGG | 0.678520 | 8_3:+51636446 | Msa1294010:CDS |
| GAAAAGGAGAGCAAGGAGGG+CGG | 0.678748 | 8_3:+51636674 | Msa1294010:CDS |
| GATTGATGTTAGATGCAAAG+TGG | 0.684911 | 8_3:+51636773 | Msa1294010:CDS |
| AAGTCAATAATGTTGAAGAG+GGG | 0.686144 | 8_3:-51638403 | None:intergenic |
| AGTTGAAAAGGAGAGCAAGG+AGG | 0.686372 | 8_3:+51636670 | Msa1294010:CDS |
| TACTGCAGGAGTGAAATCCA+AGG | 0.690749 | 8_3:+51638051 | Msa1294010:CDS |
| AGTAAATAACATATCCCCAG+TGG | 0.717830 | 8_3:-51636943 | None:intergenic |
| GTGGAAGGTACATAGCTCAG+AGG | 0.720598 | 8_3:+51635235 | Msa1294010:CDS |
| TGAGGGAAACATAAACGGCG+CGG | 0.758453 | 8_3:+51636626 | Msa1294010:CDS |
| TTAGCTTTGAGACCTCATGG+AGG | 0.773888 | 8_3:-51638599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGATTTACATTTTTTTAT+TGG | + | chr8_3:51638465-51638484 | Msa1294010:three_prime_UTR | 10.0% |
| !!! | TTTTTGTTTATAATAGTGAT+TGG | + | chr8_3:51635530-51635549 | Msa1294010:intron | 15.0% |
| !! | AATGTAAATCTTATTGAATT+TGG | - | chr8_3:51638458-51638477 | None:intergenic | 15.0% |
| !! | ATGAAATTGTGAGATTATTA+AGG | - | chr8_3:51635020-51635039 | None:intergenic | 20.0% |
| !! | GAATAAAAACTGAAACTTTA+AGG | - | chr8_3:51635100-51635119 | None:intergenic | 20.0% |
| !! | CAAAACAAATCTTTATCTTT+AGG | - | chr8_3:51635331-51635350 | None:intergenic | 20.0% |
| !! | AGATTGCAATAATACAAAAA+GGG | - | chr8_3:51635358-51635377 | None:intergenic | 20.0% |
| !! | TATTCAATGAACCTAAAAAA+TGG | - | chr8_3:51635434-51635453 | None:intergenic | 20.0% |
| !!! | CATTTTCAAATCGATAAATA+CGG | - | chr8_3:51635770-51635789 | None:intergenic | 20.0% |
| !!! | TATTATAGGTTGATAATGAT+TGG | + | chr8_3:51635937-51635956 | Msa1294010:intron | 20.0% |
| !!! | ATTATAGGTTGATAATGATT+GGG | + | chr8_3:51635938-51635957 | Msa1294010:intron | 20.0% |
| !!! | TAAATAGGTGTTAATTTTGT+TGG | + | chr8_3:51636031-51636050 | Msa1294010:intron | 20.0% |
| !! | GATATTTGACAAGAAATAAA+AGG | - | chr8_3:51636165-51636184 | None:intergenic | 20.0% |
| !!! | AACAAATTTTGAATTTGAAG+GGG | - | chr8_3:51636310-51636329 | None:intergenic | 20.0% |
| !!! | CAACAAATTTTGAATTTGAA+GGG | - | chr8_3:51636311-51636330 | None:intergenic | 20.0% |
| !!! | ACAACAAATTTTGAATTTGA+AGG | - | chr8_3:51636312-51636331 | None:intergenic | 20.0% |
| !! | TTATTGAGAAAAAGTTGAAA+AGG | + | chr8_3:51636658-51636677 | Msa1294010:CDS | 20.0% |
| !!! | TCAATATTTCTATCAGAATT+TGG | - | chr8_3:51636750-51636769 | None:intergenic | 20.0% |
| !! | AATTCTGATAGAAATATTGA+TGG | + | chr8_3:51636750-51636769 | Msa1294010:CDS | 20.0% |
| !! | ATTCTGATAGAAATATTGAT+GGG | + | chr8_3:51636751-51636770 | Msa1294010:CDS | 20.0% |
| !!! | TATTGAATAAACAGTCATTT+TGG | + | chr8_3:51637038-51637057 | Msa1294010:intron | 20.0% |
| !! | CTATTATATCATGTATAGTT+AGG | - | chr8_3:51637340-51637359 | None:intergenic | 20.0% |
| !!! | TAATAGTTGTTACTTTATTG+AGG | + | chr8_3:51637475-51637494 | Msa1294010:intron | 20.0% |
| !!! | TATAGTTTTGAATCTTTGAT+TGG | + | chr8_3:51637652-51637671 | Msa1294010:intron | 20.0% |
| !!! | TGATTGTGGTTTTATTTTTT+TGG | + | chr8_3:51638427-51638446 | Msa1294010:three_prime_UTR | 20.0% |
| !! | AAATTTCTGTCAAATATCTA+TGG | - | chr8_3:51638535-51638554 | None:intergenic | 20.0% |
| ! | CAGATTGCAATAATACAAAA+AGG | - | chr8_3:51635359-51635378 | None:intergenic | 25.0% |
| ! | TTGTTTATAATAGTGATTGG+AGG | + | chr8_3:51635533-51635552 | Msa1294010:intron | 25.0% |
| ! | GATATATGTGATGTTTGAAA+TGG | + | chr8_3:51635615-51635634 | Msa1294010:CDS | 25.0% |
| !!! | TCTGAGTTTCGATTTTAATT+TGG | + | chr8_3:51636091-51636110 | Msa1294010:intron | 25.0% |
| ! | ATAGCTAAATGTTAAGACTT+TGG | + | chr8_3:51636115-51636134 | Msa1294010:intron | 25.0% |
| ! | TAGCTAAATGTTAAGACTTT+GGG | + | chr8_3:51636116-51636135 | Msa1294010:intron | 25.0% |
| !!! | ATTTGTCAATGCATTTTGAT+TGG | + | chr8_3:51636471-51636490 | Msa1294010:CDS | 25.0% |
| !!! | GAAGAACATTTTCAAGTTTT+AGG | - | chr8_3:51636539-51636558 | None:intergenic | 25.0% |
| ! | AAAACTTGAAAATGTTCTTC+TGG | + | chr8_3:51636539-51636558 | Msa1294010:CDS | 25.0% |
| !!! | GAGGATGTTTTTTGTAATTT+TGG | - | chr8_3:51637107-51637126 | None:intergenic | 25.0% |
| ! | ATCTTCTGTTAGTAATTTGA+TGG | - | chr8_3:51637150-51637169 | None:intergenic | 25.0% |
| ! | TAAGTTCATATTTGACAGTT+CGG | - | chr8_3:51637395-51637414 | None:intergenic | 25.0% |
| ! | GTTAATGAGAAATCAATTCA+AGG | + | chr8_3:51637512-51637531 | Msa1294010:intron | 25.0% |
| ! | CTTCAATGAATTCCATTATT+GGG | - | chr8_3:51637543-51637562 | None:intergenic | 25.0% |
| ! | TCTTCAATGAATTCCATTAT+TGG | - | chr8_3:51637544-51637563 | None:intergenic | 25.0% |
| ! | GCAAAAGAAGAAACATATAA+TGG | - | chr8_3:51637702-51637721 | None:intergenic | 25.0% |
| ! | ATTTAATACTTGCATGTTAC+AGG | + | chr8_3:51638024-51638043 | Msa1294010:intron | 25.0% |
| !!! | TCAATCAATAGTTTGTTAAG+AGG | - | chr8_3:51638130-51638149 | None:intergenic | 25.0% |
| ! | AATAAGCAACCTTAAAATCA+AGG | + | chr8_3:51638333-51638352 | Msa1294010:CDS | 25.0% |
| ! | AAAGTCAATAATGTTGAAGA+GGG | - | chr8_3:51638407-51638426 | None:intergenic | 25.0% |
| ! | AAAAGTCAATAATGTTGAAG+AGG | - | chr8_3:51638408-51638427 | None:intergenic | 25.0% |
| !!! | ACATTATTGACTTTTGATTG+TGG | + | chr8_3:51638413-51638432 | Msa1294010:three_prime_UTR | 25.0% |
| !!! | GTGGTTTTATTTTTTTGGTT+TGG | + | chr8_3:51638432-51638451 | Msa1294010:three_prime_UTR | 25.0% |
| !! | ACAGTTGAAAAAGCATTGAA+AGG | + | chr8_3:51634891-51634910 | Msa1294010:five_prime_UTR | 30.0% |
| AAGAGAAAGAGAGAAAAAAG+TGG | + | chr8_3:51634922-51634941 | Msa1294010:five_prime_UTR | 30.0% | |
| ! | GATTGTTGTTGTTCTATTTG+TGG | - | chr8_3:51634989-51635008 | None:intergenic | 30.0% |
| !! | TTGCAATCTGTTTTGAATCT+TGG | + | chr8_3:51635369-51635388 | Msa1294010:intron | 30.0% |
| ! | GTTTTGTATGCATTAATTGC+TGG | + | chr8_3:51635395-51635414 | Msa1294010:intron | 30.0% |
| !!! | GTCGCAAAAAACCATTTTTT+AGG | + | chr8_3:51635420-51635439 | Msa1294010:intron | 30.0% |
| !!! | AGGATGTATTTTTTGTGCAA+GGG | + | chr8_3:51635553-51635572 | Msa1294010:intron | 30.0% |
| ! | TAATTTTGAATGGATCGGAT+TGG | + | chr8_3:51635578-51635597 | Msa1294010:CDS | 30.0% |
| ! | GATGTTTGAAATGGTGAAAT+TGG | + | chr8_3:51635624-51635643 | Msa1294010:CDS | 30.0% |
| TTAAGATATTCTCCAAATGC+AGG | - | chr8_3:51635688-51635707 | None:intergenic | 30.0% | |
| AACACAAGATGCAAAACTAT+AGG | - | chr8_3:51635715-51635734 | None:intergenic | 30.0% | |
| ATCAACCTATAATAGCTAAG+AGG | - | chr8_3:51635931-51635950 | None:intergenic | 30.0% | |
| ! | TGCGTTATGATCCTTTTTAA+TGG | + | chr8_3:51635969-51635988 | Msa1294010:intron | 30.0% |
| ! | TCCTTTTTAATGGTAACACT+TGG | + | chr8_3:51635979-51635998 | Msa1294010:intron | 30.0% |
| ACCAAGTGTTACCATTAAAA+AGG | - | chr8_3:51635983-51636002 | None:intergenic | 30.0% | |
| GCAATTGTGCATCTATAAAT+AGG | + | chr8_3:51636016-51636035 | Msa1294010:intron | 30.0% | |
| AGCTAAATGTTAAGACTTTG+GGG | + | chr8_3:51636117-51636136 | Msa1294010:intron | 30.0% | |
| !!! | TCAATGCATTTTGATTGGTT+TGG | + | chr8_3:51636476-51636495 | Msa1294010:CDS | 30.0% |
| ! | ATGTTATTTACTCCCAAAGT+CGG | + | chr8_3:51636954-51636973 | Msa1294010:CDS | 30.0% |
| !!! | TTGTAATTTTGGCTAATTCG+AGG | - | chr8_3:51637096-51637115 | None:intergenic | 30.0% |
| ! | TTTTGGTCGTTAAATCTGTT+AGG | - | chr8_3:51637227-51637246 | None:intergenic | 30.0% |
| GAACTGTCAAATATGAACTT+AGG | + | chr8_3:51637394-51637413 | Msa1294010:intron | 30.0% | |
| AATGAGAAATCAATTCAAGG+AGG | + | chr8_3:51637515-51637534 | Msa1294010:intron | 30.0% | |
| TATGTCAGCTTGACATTAAA+TGG | - | chr8_3:51637582-51637601 | None:intergenic | 30.0% | |
| GAAGAAACATATAATGGTCT+TGG | - | chr8_3:51637696-51637715 | None:intergenic | 30.0% | |
| ! | AACCAATCTTTGCATTTTGT+CGG | + | chr8_3:51637772-51637791 | Msa1294010:intron | 30.0% |
| TCGTATTAAATAGTGTAACG+CGG | - | chr8_3:51637891-51637910 | None:intergenic | 30.0% | |
| AAATTTGCCACAGTTAGTTA+CGG | - | chr8_3:51638008-51638027 | None:intergenic | 30.0% | |
| GATTCATTTCTCATTTCATC+AGG | - | chr8_3:51638289-51638308 | None:intergenic | 30.0% | |
| AATGAGAAATGAATCTAGTG+TGG | + | chr8_3:51638294-51638313 | Msa1294010:CDS | 30.0% | |
| AAGTCAATAATGTTGAAGAG+GGG | - | chr8_3:51638406-51638425 | None:intergenic | 30.0% | |
| ! | ATGTCTTGTTCTTCTTCATC+TGG | + | chr8_3:51635132-51635151 | Msa1294010:CDS | 35.0% |
| ! | TGTCTTGTTCTTCTTCATCT+GGG | + | chr8_3:51635133-51635152 | Msa1294010:CDS | 35.0% |
| TACATAGCTCAGAGGAAATT+GGG | + | chr8_3:51635243-51635262 | Msa1294010:CDS | 35.0% | |
| AGTATCAAAAGCAAGCCAAA+CGG | - | chr8_3:51635286-51635305 | None:intergenic | 35.0% | |
| TTGTATGCATTAATTGCTGG+TGG | + | chr8_3:51635398-51635417 | Msa1294010:intron | 35.0% | |
| !!! | GAGGATGTATTTTTTGTGCA+AGG | + | chr8_3:51635552-51635571 | Msa1294010:intron | 35.0% |
| !! | TGCAAGGGTGTAATTTTGAA+TGG | + | chr8_3:51635568-51635587 | Msa1294010:intron | 35.0% |
| ! | GGGTGTAATTTTGAATGGAT+CGG | + | chr8_3:51635573-51635592 | Msa1294010:intron | 35.0% |
| GAAATGGTGAAATTGGTGAA+TGG | + | chr8_3:51635631-51635650 | Msa1294010:CDS | 35.0% | |
| TCGAAATGTGAATGTGGATT+TGG | + | chr8_3:51635658-51635677 | Msa1294010:CDS | 35.0% | |
| ! | AGTTTTGCATCTTGTGTTGT+TGG | + | chr8_3:51635717-51635736 | Msa1294010:intron | 35.0% |
| ! | GTGAGTTTTCTGATCTTGAT+TGG | + | chr8_3:51635789-51635808 | Msa1294010:intron | 35.0% |
| ! | GTTTTCTGATCTTGATTGGA+TGG | + | chr8_3:51635793-51635812 | Msa1294010:intron | 35.0% |
| GGATGGTCAGATATGTATAA+TGG | + | chr8_3:51635810-51635829 | Msa1294010:intron | 35.0% | |
| TGGTCAGATATGTATAATGG+TGG | + | chr8_3:51635813-51635832 | Msa1294010:intron | 35.0% | |
| TGGAAAATTTAGCATATGCG+TGG | + | chr8_3:51635833-51635852 | Msa1294010:intron | 35.0% | |
| TTTAGCATATGCGTGGAATT+TGG | + | chr8_3:51635840-51635859 | Msa1294010:intron | 35.0% | |
| ATAGATTTGTCTCTTTGCAG+AGG | + | chr8_3:51635876-51635895 | Msa1294010:intron | 35.0% | |
| ! | TTTAATGGTAACACTTGGTG+CGG | + | chr8_3:51635984-51636003 | Msa1294010:intron | 35.0% |
| AGTTTATAGTGAGCTGCATA+TGG | + | chr8_3:51636056-51636075 | Msa1294010:intron | 35.0% | |
| AAAATCGAAACTCAGAACCA+TGG | - | chr8_3:51636087-51636106 | None:intergenic | 35.0% | |
| TCTTCCGATGAATAAAGTCA+GGG | + | chr8_3:51636446-51636465 | Msa1294010:CDS | 35.0% | |
| ATCTCCCTGACTTTATTCAT+CGG | - | chr8_3:51636453-51636472 | None:intergenic | 35.0% | |
| AAAAGTTGAAAAGGAGAGCA+AGG | + | chr8_3:51636667-51636686 | Msa1294010:CDS | 35.0% | |
| GATTGATGTTAGATGCAAAG+TGG | + | chr8_3:51636773-51636792 | Msa1294010:CDS | 35.0% | |
| !! | AGATGCAAAGTGGTTGATTT+TGG | + | chr8_3:51636783-51636802 | Msa1294010:CDS | 35.0% |
| !! | TTGATTTTGGAAATGCGTGT+TGG | + | chr8_3:51636796-51636815 | Msa1294010:CDS | 35.0% |
| !! | TGATTTTGGAAATGCGTGTT+GGG | + | chr8_3:51636797-51636816 | Msa1294010:CDS | 35.0% |
| AGTAAATAACATATCCCCAG+TGG | - | chr8_3:51636946-51636965 | None:intergenic | 35.0% | |
| ! | TTTTGGTCCTTGAATGTGTT+AGG | + | chr8_3:51637055-51637074 | Msa1294010:intron | 35.0% |
| TAACGACCAAAATGAGTGTT+CGG | + | chr8_3:51637235-51637254 | Msa1294010:intron | 35.0% | |
| ! | CAATATCCGAACACTCATTT+TGG | - | chr8_3:51637244-51637263 | None:intergenic | 35.0% |
| ATTGAAGATACCTGTGTTAC+CGG | + | chr8_3:51637556-51637575 | Msa1294010:intron | 35.0% | |
| AACCGACAAAATGCAAAGAT+TGG | - | chr8_3:51637777-51637796 | None:intergenic | 35.0% | |
| ATAACAATGACATGCAGAGA+CGG | - | chr8_3:51637864-51637883 | None:intergenic | 35.0% | |
| ! | TACGAAGTGTTCTCAAATAG+TGG | + | chr8_3:51637906-51637925 | Msa1294010:intron | 35.0% |
| TGAATCTAGTGTGGAAAAAG+TGG | + | chr8_3:51638303-51638322 | Msa1294010:CDS | 35.0% | |
| AAGCAACCTTAAAATCAAGG+TGG | + | chr8_3:51638336-51638355 | Msa1294010:CDS | 35.0% | |
| AGCAACCTTAAAATCAAGGT+GGG | + | chr8_3:51638337-51638356 | Msa1294010:CDS | 35.0% | |
| GTGTATATGACATTCATCCA+AGG | + | chr8_3:51638557-51638576 | Msa1294010:three_prime_UTR | 35.0% | |
| GAAAACAAAAAGACTTGCCT+TGG | - | chr8_3:51638577-51638596 | None:intergenic | 35.0% | |
| ! | ATGAAGGCTTTGATTCCTAC+CGG | + | chr8_3:51635169-51635188 | Msa1294010:CDS | 40.0% |
| GTACATAGCTCAGAGGAAAT+TGG | + | chr8_3:51635242-51635261 | Msa1294010:CDS | 40.0% | |
| GGATTGAGAACATACATCGT+TGG | - | chr8_3:51635310-51635329 | None:intergenic | 40.0% | |
| GGTCATTCGAAATGTGAATG+TGG | + | chr8_3:51635652-51635671 | Msa1294010:CDS | 40.0% | |
| GGATTTGGATTTCCTGCATT+TGG | + | chr8_3:51635673-51635692 | Msa1294010:CDS | 40.0% | |
| TTGCGCCTCTTAGCTATTAT+AGG | + | chr8_3:51635923-51635942 | Msa1294010:intron | 40.0% | |
| AGCTGCATATGGAAATACCA+TGG | + | chr8_3:51636067-51636086 | Msa1294010:intron | 40.0% | |
| GGAAAACAAAAATTCCGCAC+AGG | - | chr8_3:51636144-51636163 | None:intergenic | 40.0% | |
| GTTCTTTCATCCATTGCTGA+TGG | + | chr8_3:51636282-51636301 | Msa1294010:CDS | 40.0% | |
| GCTTAAAGTGGTCGATCAAT+TGG | - | chr8_3:51636335-51636354 | None:intergenic | 40.0% | |
| TTTAAGCACACAGGTCCTAA+CGG | + | chr8_3:51636348-51636367 | Msa1294010:CDS | 40.0% | |
| GAAATTCGAGTACCATGCAT+TGG | - | chr8_3:51636380-51636399 | None:intergenic | 40.0% | |
| TGCATGGTACTCGAATTTCT+TGG | + | chr8_3:51636381-51636400 | Msa1294010:CDS | 40.0% | |
| GTCAGATACAACCGTTACAA+AGG | + | chr8_3:51636423-51636442 | Msa1294010:CDS | 40.0% | |
| TCATCGGAAGACCTTTGTAA+CGG | - | chr8_3:51636437-51636456 | None:intergenic | 40.0% | |
| GTCTTCCGATGAATAAAGTC+AGG | + | chr8_3:51636445-51636464 | Msa1294010:CDS | 40.0% | |
| !! | TTGGTTTGGATTACTTGCAC+AGG | + | chr8_3:51636490-51636509 | Msa1294010:CDS | 40.0% |
| ! | TGGTTTGGATTACTTGCACA+GGG | + | chr8_3:51636491-51636510 | Msa1294010:CDS | 40.0% |
| ! | TCTGGTTTCTACTATCGATC+CGG | + | chr8_3:51636557-51636576 | Msa1294010:CDS | 40.0% |
| TTCTGGACAAAGAGCTTCTA+TGG | + | chr8_3:51636707-51636726 | Msa1294010:CDS | 40.0% | |
| TCTGGACAAAGAGCTTCTAT+GGG | + | chr8_3:51636708-51636727 | Msa1294010:CDS | 40.0% | |
| GTCTGAATTTCTTCCGCAAA+TGG | - | chr8_3:51636831-51636850 | None:intergenic | 40.0% | |
| AGCAAAAGACCACATATCGA+CGG | - | chr8_3:51636904-51636923 | None:intergenic | 40.0% | |
| CTAAAACCTTGTCCGACTTT+GGG | - | chr8_3:51636969-51636988 | None:intergenic | 40.0% | |
| GTTAGCACCTAACACATTCA+AGG | - | chr8_3:51637065-51637084 | None:intergenic | 40.0% | |
| AATGAGTGTTCGGATATTGC+AGG | + | chr8_3:51637245-51637264 | Msa1294010:intron | 40.0% | |
| ATGAGTGTTCGGATATTGCA+GGG | + | chr8_3:51637246-51637265 | Msa1294010:intron | 40.0% | |
| GGGTCATATGTTCCAATGAA+AGG | + | chr8_3:51637266-51637285 | Msa1294010:intron | 40.0% | |
| TCCAATGAAAGGAAAGCTTC+TGG | + | chr8_3:51637277-51637296 | Msa1294010:intron | 40.0% | |
| TCCAGAAGCTTTCCTTTCAT+TGG | - | chr8_3:51637281-51637300 | None:intergenic | 40.0% | |
| TCAGCTTGACATTAAATGGC+CGG | - | chr8_3:51637578-51637597 | None:intergenic | 40.0% | |
| AGTTACGGTGTAGTCAATCA+TGG | - | chr8_3:51637993-51638012 | None:intergenic | 40.0% | |
| AAGGATTTCTTCGACAGACA+CGG | + | chr8_3:51638070-51638089 | Msa1294010:CDS | 40.0% | |
| ! | GGATTCGGAGGCTAAAATTT+TGG | + | chr8_3:51638104-51638123 | Msa1294010:CDS | 40.0% |
| TCAGGTGCAAAATCAAGAAG+AGG | - | chr8_3:51638205-51638224 | None:intergenic | 40.0% | |
| AGTGTGGAAAAAGTGGATGT+TGG | + | chr8_3:51638310-51638329 | Msa1294010:CDS | 40.0% | |
| GCAACCTTAAAATCAAGGTG+GGG | + | chr8_3:51638338-51638357 | Msa1294010:CDS | 40.0% | |
| ! | ACTTCCCCACCTTGATTTTA+AGG | - | chr8_3:51638345-51638364 | None:intergenic | 40.0% |
| !!! | TTTTGTTTTCCTCCTCCATG+AGG | + | chr8_3:51638587-51638606 | Msa1294010:three_prime_UTR | 40.0% |
| !! | TGGAGCATTGTTGAAGAGAG+AGG | + | chr8_3:51634942-51634961 | Msa1294010:five_prime_UTR | 45.0% |
| ! | GGGTCTGAAGATGATGATGA+AGG | + | chr8_3:51635153-51635172 | Msa1294010:CDS | 45.0% |
| TTTGATTCCTACCGGAAAGG+TGG | + | chr8_3:51635177-51635196 | Msa1294010:CDS | 45.0% | |
| TAGCTCAGAGGAAATTGGGT+TGG | + | chr8_3:51635247-51635266 | Msa1294010:CDS | 45.0% | |
| AGCTCAGAGGAAATTGGGTT+GGG | + | chr8_3:51635248-51635267 | Msa1294010:CDS | 45.0% | |
| GTCTCTTTGCAGAGGACTTA+AGG | + | chr8_3:51635884-51635903 | Msa1294010:intron | 45.0% | |
| ATCGACCACTTTAAGCACAC+AGG | + | chr8_3:51636339-51636358 | Msa1294010:CDS | 45.0% | |
| TAGGACCTGTGTGCTTAAAG+TGG | - | chr8_3:51636347-51636366 | None:intergenic | 45.0% | |
| GATTACTTGCACAGGGAACA+TGG | + | chr8_3:51636498-51636517 | Msa1294010:CDS | 45.0% | |
| ! | GATCTAACAGGGTCTTTTGC+CGG | - | chr8_3:51636579-51636598 | None:intergenic | 45.0% |
| GGCAAAAGACCCTGTTAGAT+CGG | + | chr8_3:51636578-51636597 | Msa1294010:CDS | 45.0% | |
| GCAAAAGACCCTGTTAGATC+GGG | + | chr8_3:51636579-51636598 | Msa1294010:CDS | 45.0% | |
| AGGCCTGAGGGAAACATAAA+CGG | + | chr8_3:51636621-51636640 | Msa1294010:CDS | 45.0% | |
| AGTTGAAAAGGAGAGCAAGG+AGG | + | chr8_3:51636670-51636689 | Msa1294010:CDS | 45.0% | |
| GTTGAAAAGGAGAGCAAGGA+GGG | + | chr8_3:51636671-51636690 | Msa1294010:CDS | 45.0% | |
| AGGGCGGTAGCTAAAATTTC+TGG | + | chr8_3:51636690-51636709 | Msa1294010:CDS | 45.0% | |
| AAGAGCTTCTATGGGAGGAA+TGG | + | chr8_3:51636716-51636735 | Msa1294010:CDS | 45.0% | |
| AGAGCTTCTATGGGAGGAAT+GGG | + | chr8_3:51636717-51636736 | Msa1294010:CDS | 45.0% | |
| TTGGGCTGATAAGCCATTTG+CGG | + | chr8_3:51636815-51636834 | Msa1294010:CDS | 45.0% | |
| AGCTCCTGAAGTTATACTGC+AGG | + | chr8_3:51636863-51636882 | Msa1294010:CDS | 45.0% | |
| ATTCCTTCTCCGTCGATATG+TGG | + | chr8_3:51636892-51636911 | Msa1294010:CDS | 45.0% | |
| TTTACTCCCAAAGTCGGACA+AGG | + | chr8_3:51636960-51636979 | Msa1294010:CDS | 45.0% | |
| GCTAAAACCTTGTCCGACTT+TGG | - | chr8_3:51636970-51636989 | None:intergenic | 45.0% | |
| CCAAACTAACGAGACATTGG+AGG | - | chr8_3:51637126-51637145 | None:intergenic | 45.0% | |
| CCTCCAATGTCTCGTTAGTT+TGG | + | chr8_3:51637123-51637142 | Msa1294010:intron | 45.0% | |
| GGACCAAACTAACGAGACAT+TGG | - | chr8_3:51637129-51637148 | None:intergenic | 45.0% | |
| !! | AGGAAAGCTTCTGGAACAGT+TGG | + | chr8_3:51637286-51637305 | Msa1294010:intron | 45.0% |
| !! | TTCAAGGAGGCACCCAATAA+TGG | + | chr8_3:51637528-51637547 | Msa1294010:intron | 45.0% |
| CATTAAATGGCCGGTAACAC+AGG | - | chr8_3:51637569-51637588 | None:intergenic | 45.0% | |
| CTTTGTGAGTCTCTACACCT+CGG | + | chr8_3:51637734-51637753 | Msa1294010:intron | 45.0% | |
| TTATCCTGACATGCTATCCG+AGG | - | chr8_3:51637754-51637773 | None:intergenic | 45.0% | |
| !! | CTTTGCATTTTGTCGGTTGC+AGG | + | chr8_3:51637779-51637798 | Msa1294010:intron | 45.0% |
| TCCAAGGAGTTCCATCATCA+GGG | - | chr8_3:51637814-51637833 | None:intergenic | 45.0% | |
| TTCCAAGGAGTTCCATCATC+AGG | - | chr8_3:51637815-51637834 | None:intergenic | 45.0% | |
| GACTACACCGTAACTAACTG+TGG | + | chr8_3:51637998-51638017 | Msa1294010:intron | 45.0% | |
| ATGTTACAGGTTGCTACTGC+AGG | + | chr8_3:51638037-51638056 | Msa1294010:intron | 45.0% | |
| TACTGCAGGAGTGAAATCCA+AGG | + | chr8_3:51638051-51638070 | Msa1294010:CDS | 45.0% | |
| GTGTCTGTCGAAGAAATCCT+TGG | - | chr8_3:51638071-51638090 | None:intergenic | 45.0% | |
| AGGATTTCTTCGACAGACAC+GGG | + | chr8_3:51638071-51638090 | Msa1294010:CDS | 45.0% | |
| ACGGGGATCTCAAAAGGATT+CGG | + | chr8_3:51638089-51638108 | Msa1294010:CDS | 45.0% | |
| ! | AGTCCTTTTCCATGAGCCAA+GGG | - | chr8_3:51638261-51638280 | None:intergenic | 45.0% |
| AAATCAAGGTGGGGAAGTGA+AGG | + | chr8_3:51638347-51638366 | Msa1294010:CDS | 45.0% | |
| AATCAAGGTGGGGAAGTGAA+GGG | + | chr8_3:51638348-51638367 | Msa1294010:exon | 45.0% | |
| TGTTGAAGAGGGGACTTAGA+GGG | - | chr8_3:51638396-51638415 | None:intergenic | 45.0% | |
| ATGTTGAAGAGGGGACTTAG+AGG | - | chr8_3:51638397-51638416 | None:intergenic | 45.0% | |
| !! | TTAGCTTTGAGACCTCATGG+AGG | - | chr8_3:51638602-51638621 | None:intergenic | 45.0% |
| !! | CTCTTAGCTTTGAGACCTCA+TGG | - | chr8_3:51638605-51638624 | None:intergenic | 45.0% |
| ! | GGCTTTGATTCCTACCGGAA+AGG | + | chr8_3:51635174-51635193 | Msa1294010:CDS | 50.0% |
| ATGGTATCCACCTTTCCGGT+AGG | - | chr8_3:51635187-51635206 | None:intergenic | 50.0% | |
| CAGCATGGTATCCACCTTTC+CGG | - | chr8_3:51635191-51635210 | None:intergenic | 50.0% | |
| AAGGTGGATACCATGCTGTC+CGG | + | chr8_3:51635193-51635212 | Msa1294010:CDS | 50.0% | |
| CTGAGCTATGTACCTTCCAC+CGG | - | chr8_3:51635235-51635254 | None:intergenic | 50.0% | |
| ! | GTGGAAGGTACATAGCTCAG+AGG | + | chr8_3:51635235-51635254 | Msa1294010:CDS | 50.0% |
| ! | GCTCAGAGGAAATTGGGTTG+GGG | + | chr8_3:51635249-51635268 | Msa1294010:CDS | 50.0% |
| ! | GGGGTCAGTTTTCAACCGTT+TGG | + | chr8_3:51635268-51635287 | Msa1294010:CDS | 50.0% |
| !! | TAAGACTTTGGGGTCCTGTG+CGG | + | chr8_3:51636127-51636146 | Msa1294010:intron | 50.0% |
| ! | CAAACTGCGCTGCACTTTTC+TGG | - | chr8_3:51636236-51636255 | None:intergenic | 50.0% |
| ! | AAGTGCAGCGCAGTTTGTTC+AGG | + | chr8_3:51636239-51636258 | Msa1294010:CDS | 50.0% |
| !! | GAGTCTCCCCGATTTTAGAG+AGG | + | chr8_3:51636601-51636620 | Msa1294010:CDS | 50.0% |
| !! | CTCAGGCCTCTCTAAAATCG+GGG | - | chr8_3:51636610-51636629 | None:intergenic | 50.0% |
| !! | CCTCAGGCCTCTCTAAAATC+GGG | - | chr8_3:51636611-51636630 | None:intergenic | 50.0% |
| !! | CCCTCAGGCCTCTCTAAAAT+CGG | - | chr8_3:51636612-51636631 | None:intergenic | 50.0% |
| !! | CCGATTTTAGAGAGGCCTGA+GGG | + | chr8_3:51636609-51636628 | Msa1294010:CDS | 50.0% |
| TGAGGGAAACATAAACGGCG+CGG | + | chr8_3:51636626-51636645 | Msa1294010:CDS | 50.0% | |
| GGACAAAGAGCTTCTATGGG+AGG | + | chr8_3:51636711-51636730 | Msa1294010:CDS | 50.0% | |
| CCAGCCTGCAGTATAACTTC+AGG | - | chr8_3:51636870-51636889 | None:intergenic | 50.0% | |
| CCTGAAGTTATACTGCAGGC+TGG | + | chr8_3:51636867-51636886 | Msa1294010:CDS | 50.0% | |
| AGACCACATATCGACGGAGA+AGG | - | chr8_3:51636898-51636917 | None:intergenic | 50.0% | |
| ATTGCTTTCGAGCTTGCCAC+TGG | + | chr8_3:51636927-51636946 | Msa1294010:CDS | 50.0% | |
| TTGCTTTCGAGCTTGCCACT+GGG | + | chr8_3:51636928-51636947 | Msa1294010:CDS | 50.0% | |
| !! | AGTCGGACAAGGTTTTAGCG+AGG | + | chr8_3:51636971-51636990 | Msa1294010:CDS | 50.0% |
| !! | ACAAGGTTTTAGCGAGGACG+AGG | + | chr8_3:51636977-51636996 | Msa1294010:CDS | 50.0% |
| TACACCTCGGATAGCATGTC+AGG | + | chr8_3:51637747-51637766 | Msa1294010:intron | 50.0% | |
| AACTCCTTGGAAAGATGCCC+CGG | + | chr8_3:51637823-51637842 | Msa1294010:CDS | 50.0% | |
| CAATGACATGCAGAGACGGT+GGG | - | chr8_3:51637860-51637879 | None:intergenic | 50.0% | |
| ACAATGACATGCAGAGACGG+TGG | - | chr8_3:51637861-51637880 | None:intergenic | 50.0% | |
| TTTGCCACGCTGCAAAGCTA+TGG | - | chr8_3:51637943-51637962 | None:intergenic | 50.0% | |
| GGATTTCTTCGACAGACACG+GGG | + | chr8_3:51638072-51638091 | Msa1294010:CDS | 50.0% | |
| ACAGACACGGGGATCTCAAA+AGG | + | chr8_3:51638083-51638102 | Msa1294010:CDS | 50.0% | |
| GGGATCTCAAAAGGATTCGG+AGG | + | chr8_3:51638092-51638111 | Msa1294010:CDS | 50.0% | |
| ACACCCTTGGCTCATGGAAA+AGG | + | chr8_3:51638255-51638274 | Msa1294010:CDS | 50.0% | |
| ! | GAGTCCTTTTCCATGAGCCA+AGG | - | chr8_3:51638262-51638281 | None:intergenic | 50.0% |
| ATCAAGGTGGGGAAGTGAAG+GGG | + | chr8_3:51638349-51638368 | Msa1294010:exon | 50.0% | |
| AGGTGGATACCATGCTGTCC+GGG | + | chr8_3:51635194-51635213 | Msa1294010:CDS | 55.0% | |
| !! | ATGCATTGGTGCTGGCCGTT+AGG | - | chr8_3:51636366-51636385 | None:intergenic | 55.0% |
| TAACGGCCAGCACCAATGCA+TGG | + | chr8_3:51636365-51636384 | Msa1294010:CDS | 55.0% | |
| ! | CGAGTACCATGCATTGGTGC+TGG | - | chr8_3:51636374-51636393 | None:intergenic | 55.0% |
| GGGAGACTCCCGATCTAACA+GGG | - | chr8_3:51636590-51636609 | None:intergenic | 55.0% | |
| !! | CCCGATTTTAGAGAGGCCTG+AGG | + | chr8_3:51636608-51636627 | Msa1294010:CDS | 55.0% |
| GCGCCGTTTATGTTTCCCTC+AGG | - | chr8_3:51636627-51636646 | None:intergenic | 55.0% | |
| GAAAAGGAGAGCAAGGAGGG+CGG | + | chr8_3:51636674-51636693 | Msa1294010:CDS | 55.0% | |
| TGCTTTCGAGCTTGCCACTG+GGG | + | chr8_3:51636929-51636948 | Msa1294010:CDS | 55.0% | |
| GGATCACCTTGCCCTGATGA+TGG | + | chr8_3:51637800-51637819 | Msa1294010:intron | 55.0% | |
| GGAGTTCCATCATCAGGGCA+AGG | - | chr8_3:51637809-51637828 | None:intergenic | 55.0% | |
| !! | GCCCTGATGATGGAACTCCT+TGG | + | chr8_3:51637810-51637829 | Msa1294010:CDS | 55.0% |
| ACGGTGGGAACACTACCTTC+CGG | - | chr8_3:51637845-51637864 | None:intergenic | 55.0% | |
| ! | AGCACCATAGCTTTGCAGCG+TGG | + | chr8_3:51637936-51637955 | Msa1294010:intron | 55.0% |
| TCTGCAGTTGGTCGCTTCTC+AGG | - | chr8_3:51638223-51638242 | None:intergenic | 55.0% | |
| ! | TGCAGGCACTGTTCTGCAGT+TGG | - | chr8_3:51638235-51638254 | None:intergenic | 55.0% |
| AACAGTGCCTGCAACACCCT+TGG | + | chr8_3:51638242-51638261 | Msa1294010:CDS | 55.0% | |
| TCAAGGTGGGGAAGTGAAGG+GGG | + | chr8_3:51638350-51638369 | Msa1294010:exon | 55.0% | |
| !! | GCTTTGAGACCTCATGGAGG+AGG | - | chr8_3:51638599-51638618 | None:intergenic | 55.0% |
| GGATACCATGCTGTCCGGGT+CGG | + | chr8_3:51635198-51635217 | Msa1294010:CDS | 60.0% | |
| GTGATCAGTTCGCCGGTGGA+AGG | + | chr8_3:51635220-51635239 | Msa1294010:CDS | 60.0% | |
| !! | TGAAGGGGCGCCATCAGCAA+TGG | - | chr8_3:51636295-51636314 | None:intergenic | 60.0% |
| GGGGAGACTCCCGATCTAAC+AGG | - | chr8_3:51636591-51636610 | None:intergenic | 60.0% | |
| ! | CCTTCCGGGGCATCTTTCCA+AGG | - | chr8_3:51637830-51637849 | None:intergenic | 60.0% |
| CCTTGGAAAGATGCCCCGGA+AGG | + | chr8_3:51637827-51637846 | Msa1294010:CDS | 60.0% | |
| GGTGGGAACACTACCTTCCG+GGG | - | chr8_3:51637843-51637862 | None:intergenic | 60.0% | |
| CGGTGGGAACACTACCTTCC+GGG | - | chr8_3:51637844-51637863 | None:intergenic | 60.0% | |
| !! | CCATGAGCCAAGGGTGTTGC+AGG | - | chr8_3:51638252-51638271 | None:intergenic | 60.0% |
| CCTGCAACACCCTTGGCTCA+TGG | + | chr8_3:51638249-51638268 | Msa1294010:CDS | 60.0% | |
| GATCACCGACCCGGACAGCA+TGG | - | chr8_3:51635206-51635225 | None:intergenic | 65.0% | |
| CGGCGAACTGATCACCGACC+CGG | - | chr8_3:51635215-51635234 | None:intergenic | 65.0% | |
| CGGGTCGGTGATCAGTTCGC+CGG | + | chr8_3:51635213-51635232 | Msa1294010:CDS | 65.0% | |
| GTCGGTGATCAGTTCGCCGG+TGG | + | chr8_3:51635216-51635235 | Msa1294010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 51634879 | 51638639 | 51634879 | ID=Msa1294010;Name=Msa1294010 |
| chr8_3 | mRNA | 51634879 | 51638639 | 51634879 | ID=Msa1294010-mRNA-1;Parent=Msa1294010;Name=Msa1294010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=253|0.5|0.8|0.8|1|1|5|273|490 |
| chr8_3 | exon | 51634879 | 51635314 | 51634879 | ID=Msa1294010-mRNA-1:exon:14479;Parent=Msa1294010-mRNA-1 |
| chr8_3 | exon | 51635574 | 51635708 | 51635574 | ID=Msa1294010-mRNA-1:exon:14480;Parent=Msa1294010-mRNA-1 |
| chr8_3 | exon | 51636213 | 51636998 | 51636213 | ID=Msa1294010-mRNA-1:exon:14481;Parent=Msa1294010-mRNA-1 |
| chr8_3 | exon | 51637801 | 51637848 | 51637801 | ID=Msa1294010-mRNA-1:exon:14482;Parent=Msa1294010-mRNA-1 |
| chr8_3 | exon | 51638046 | 51638639 | 51638046 | ID=Msa1294010-mRNA-1:exon:14483;Parent=Msa1294010-mRNA-1 |
| chr8_3 | five_prime_UTR | 51634879 | 51635131 | 51634879 | ID=Msa1294010-mRNA-1:five_prime_utr;Parent=Msa1294010-mRNA-1 |
| chr8_3 | CDS | 51635132 | 51635314 | 51635132 | ID=Msa1294010-mRNA-1:cds;Parent=Msa1294010-mRNA-1 |
| chr8_3 | CDS | 51635574 | 51635708 | 51635574 | ID=Msa1294010-mRNA-1:cds;Parent=Msa1294010-mRNA-1 |
| chr8_3 | CDS | 51636213 | 51636998 | 51636213 | ID=Msa1294010-mRNA-1:cds;Parent=Msa1294010-mRNA-1 |
| chr8_3 | CDS | 51637801 | 51637848 | 51637801 | ID=Msa1294010-mRNA-1:cds;Parent=Msa1294010-mRNA-1 |
| chr8_3 | CDS | 51638046 | 51638366 | 51638046 | ID=Msa1294010-mRNA-1:cds;Parent=Msa1294010-mRNA-1 |
| chr8_3 | three_prime_UTR | 51638367 | 51638639 | 51638367 | ID=Msa1294010-mRNA-1:three_prime_utr;Parent=Msa1294010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
