AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1294880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1294880 MtrunA17_Chr8g0372121 84.545 330 6 3 1 304 1 311 0.0 555
Msa1294880 MtrunA17_Chr5g0405211 58.873 355 86 11 2 303 4 351 4.37e-122 353
Msa1294880 MtrunA17_Chr4g0018391 47.678 323 102 9 4 269 5 317 4.59e-87 264
Msa1294880 MtrunA17_Chr4g0056541 50.662 302 99 7 4 259 5 302 2.35e-85 260
Msa1294880 MtrunA17_Chr5g0398971 47.115 312 108 11 4 267 5 307 8.47e-78 241
Msa1294880 MtrunA17_Chr1g0200561 42.609 345 129 11 2 288 15 348 1.33e-76 238
Msa1294880 MtrunA17_Chr8g0346001 38.418 354 119 9 3 272 12 350 8.65e-66 212
Msa1294880 MtrunA17_Chr2g0309331 61.585 164 36 3 3 139 7 170 5.06e-63 202
Msa1294880 MtrunA17_Chr4g0017921 57.955 176 47 3 6 156 8 181 6.66e-63 202
Msa1294880 MtrunA17_Chr2g0309891 49.102 167 57 3 1 139 1 167 2.41e-52 175
Msa1294880 MtrunA17_Chr3g0109821 44.149 188 71 3 1 154 1 188 6.40e-52 181
Msa1294880 MtrunA17_Chr6g0481091 44.944 178 71 2 6 156 6 183 3.72e-50 166
Msa1294880 MtrunA17_Chr5g0433781 45.238 168 65 2 1 141 1 168 1.63e-49 174
Msa1294880 MtrunA17_Chr3g0091921 52.318 151 45 2 6 129 16 166 3.41e-49 166
Msa1294880 MtrunA17_Chr4g0060931 48.701 154 52 2 6 132 17 170 3.29e-48 164
Msa1294880 MtrunA17_Chr6g0484441 48.344 151 55 2 2 129 1 151 2.78e-47 161
Msa1294880 MtrunA17_Chr1g0183741 44.199 181 75 4 4 161 8 185 3.29e-47 159
Msa1294880 MtrunA17_Chr6g0453451 49.673 153 50 2 6 131 20 172 4.98e-47 160
Msa1294880 MtrunA17_Chr7g0253011 48.750 160 51 3 6 134 17 176 2.91e-46 160
Msa1294880 MtrunA17_Chr3g0130101 35.926 270 135 6 8 242 9 275 4.35e-46 159
Msa1294880 MtrunA17_Chr5g0417791 44.068 177 69 3 6 152 3 179 5.15e-46 156
Msa1294880 MtrunA17_Chr8g0361731 41.026 195 77 5 2 159 10 203 4.38e-45 157
Msa1294880 MtrunA17_Chr6g0461661 47.826 161 55 3 6 137 18 178 1.05e-44 156
Msa1294880 MtrunA17_Chr2g0316971 47.436 156 53 3 6 132 23 178 1.13e-44 155
Msa1294880 MtrunA17_Chr5g0417001 41.146 192 76 5 2 157 10 200 1.49e-44 155
Msa1294880 MtrunA17_Chr2g0312321 44.199 181 70 5 1 155 6 181 2.07e-44 153
Msa1294880 MtrunA17_Chr5g0400461 48.125 160 52 4 1 129 1 160 5.66e-44 153
Msa1294880 MtrunA17_Chr4g0042561 46.104 154 54 2 6 130 9 162 1.06e-43 150
Msa1294880 MtrunA17_Chr7g0252971 41.040 173 64 3 3 137 5 177 2.46e-43 151
Msa1294880 MtrunA17_Chr7g0214071 45.860 157 63 3 6 140 15 171 3.40e-43 149
Msa1294880 MtrunA17_Chr1g0147421 45.570 158 60 4 3 134 24 181 4.71e-43 151
Msa1294880 MtrunA17_Chr3g0139331 46.053 152 57 3 3 129 8 159 4.84e-43 150
Msa1294880 MtrunA17_Chr4g0054791 47.170 159 54 3 1 129 1 159 5.47e-43 150
Msa1294880 MtrunA17_Chr7g0261411 48.980 147 52 3 4 127 8 154 9.79e-43 148
Msa1294880 MtrunA17_Chr3g0124761 45.860 157 56 3 6 134 7 162 2.63e-42 147
Msa1294880 MtrunA17_Chr8g0384721 45.570 158 56 3 6 134 7 163 2.77e-42 147
Msa1294880 MtrunA17_Chr2g0318081 44.025 159 64 2 1 134 11 169 3.66e-42 149
Msa1294880 MtrunA17_Chr3g0130731 44.586 157 58 3 6 134 7 162 6.37e-42 146
Msa1294880 MtrunA17_Chr7g0217721 55.645 124 39 1 9 116 22 145 1.25e-41 147
Msa1294880 MtrunA17_Chr3g0144271 53.676 136 44 3 3 119 20 155 2.19e-41 148
Msa1294880 MtrunA17_Chr6g0453131 41.279 172 63 4 8 141 17 188 3.61e-41 147
Msa1294880 MtrunA17_Chr2g0318101 43.030 165 56 3 6 132 15 179 5.77e-41 145
Msa1294880 MtrunA17_Chr5g0428991 45.625 160 60 2 6 138 25 184 8.70e-41 149
Msa1294880 MtrunA17_Chr8g0359921 44.231 156 60 2 6 134 14 169 2.68e-40 143
Msa1294880 MtrunA17_Chr8g0364791 45.333 150 55 2 8 130 8 157 3.25e-40 145
Msa1294880 MtrunA17_Chr7g0217711 54.032 124 41 1 9 116 22 145 6.34e-40 137
Msa1294880 MtrunA17_Chr3g0128111 45.946 148 53 2 9 129 45 192 6.65e-40 140
Msa1294880 MtrunA17_Chr1g0197351 38.542 192 83 4 4 161 40 230 9.99e-40 145
Msa1294880 MtrunA17_Chr3g0128151 47.020 151 53 2 6 129 22 172 2.17e-39 145
Msa1294880 MtrunA17_Chr4g0047841 48.485 132 50 2 6 119 15 146 6.43e-39 140
Msa1294880 MtrunA17_Chr1g0201021 48.462 130 49 1 8 119 21 150 1.47e-38 143
Msa1294880 MtrunA17_Chr5g0442771 34.091 264 119 7 6 216 18 279 1.53e-38 138
Msa1294880 MtrunA17_Chr7g0263931 44.516 155 55 3 6 129 11 165 2.16e-38 138
Msa1294880 MtrunA17_Chr2g0326361 40.237 169 70 3 7 144 15 183 1.41e-37 135
Msa1294880 MtrunA17_Chr8g0384201 43.333 150 58 2 8 130 8 157 1.52e-37 139
Msa1294880 MtrunA17_Chr2g0311651 40.828 169 58 4 6 132 21 189 3.99e-37 134
Msa1294880 MtrunA17_Chr2g0311661 40.237 169 59 4 6 132 20 188 3.48e-36 131
Msa1294880 MtrunA17_Chr1g0197361 36.126 191 93 5 8 171 10 198 1.33e-35 135
Msa1294880 MtrunA17_Chr3g0092671 35.514 214 107 6 8 191 7 219 2.43e-35 134
Msa1294880 MtrunA17_Chr4g0038751 42.308 156 67 3 3 135 12 167 1.32e-34 127
Msa1294880 MtrunA17_Chr4g0076731 44.966 149 58 5 5 129 53 201 2.00e-34 129
Msa1294880 MtrunA17_Chr8g0385991 45.238 126 53 2 6 115 14 139 5.56e-33 121
Msa1294880 MtrunA17_Chr3g0131911 41.772 158 59 5 6 130 14 171 4.33e-32 119
Msa1294880 MtrunA17_Chr3g0113001 52.041 98 35 2 51 136 26 123 1.73e-29 114
Msa1294880 MtrunA17_Chr3g0113031 51.515 99 35 2 51 136 1 99 2.06e-29 113
Msa1294880 MtrunA17_Chr4g0026141 44.444 135 53 4 2 114 1 135 5.65e-28 108
Msa1294880 MtrunA17_Chr4g0050701 36.242 149 70 3 6 129 11 159 2.95e-27 105
Msa1294880 MtrunA17_Chr8g0345671 41.379 145 59 5 6 125 11 154 3.07e-27 109
Msa1294880 MtrunA17_Chr8g0345691 42.069 145 58 5 6 125 12 155 1.41e-26 108
Msa1294880 MtrunA17_Chr2g0321631 43.939 132 49 5 7 114 5 135 3.77e-26 103
Msa1294880 MtrunA17_Chr8g0345711 35.714 168 66 5 1 127 7 173 3.92e-26 101
Msa1294880 MtrunA17_Chr2g0321741 32.298 161 82 4 26 162 12 169 1.51e-25 104
Msa1294880 MtrunA17_Chr7g0266701 32.335 167 76 5 6 135 4 170 8.48e-22 92.4
Msa1294880 MtrunA17_Chr8g0345731 37.879 132 59 4 6 114 24 155 4.16e-20 85.5
Msa1294880 MtrunA17_Chr7g0243371 48.529 68 33 1 52 117 26 93 4.64e-18 78.6
Msa1294880 MtrunA17_Chr8g0384351 35.507 138 68 5 6 130 10 139 1.13e-17 79.3
Msa1294880 MtrunA17_Chr8g0345721 32.934 167 56 5 2 113 26 191 1.52e-17 79.7
Msa1294880 MtrunA17_Chr8g0345741 36.923 130 60 4 19 127 4 132 5.09e-17 76.6
Msa1294880 MtrunA17_Chr8g0345701 33.562 146 59 6 4 114 5 147 1.64e-15 73.2
Msa1294880 MtrunA17_Chr3g0130321 28.387 155 81 6 6 141 7 150 1.71e-12 65.5
Msa1294880 MtrunA17_Chr7g0251651 30.597 134 65 4 6 117 18 145 2.87e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1294880 AT2G18060.3 53.151 365 106 11 2 304 4 365 3.29e-118 344
Msa1294880 AT2G18060.1 53.151 365 106 11 2 304 4 365 3.29e-118 344
Msa1294880 AT4G36160.1 59.283 307 75 10 3 260 6 311 5.40e-112 329
Msa1294880 AT4G36160.3 59.283 307 75 10 3 260 6 311 5.40e-112 329
Msa1294880 AT4G36160.2 59.283 307 75 10 3 260 10 315 6.15e-112 329
Msa1294880 AT5G66300.1 52.189 297 89 10 4 260 9 292 1.04e-89 269
Msa1294880 AT1G12260.1 46.398 347 102 10 4 267 5 350 4.27e-83 256
Msa1294880 AT1G12260.2 47.319 317 90 8 4 267 5 297 2.92e-80 247
Msa1294880 AT1G62700.1 45.401 337 93 11 4 260 5 330 1.68e-77 241
Msa1294880 AT1G62700.2 45.401 337 93 11 4 260 5 330 1.68e-77 241
Msa1294880 AT2G18060.2 48.571 280 99 10 67 304 1 277 1.07e-74 231
Msa1294880 AT5G62380.2 43.648 307 134 6 2 270 1 306 1.14e-74 233
Msa1294880 AT5G62380.1 43.648 307 134 6 2 270 1 306 1.14e-74 233
Msa1294880 AT1G71930.2 44.561 285 119 6 1 256 4 278 1.85e-70 221
Msa1294880 AT1G71930.1 44.561 285 119 6 1 256 4 278 1.85e-70 221
Msa1294880 AT2G46770.1 44.186 301 99 10 3 257 13 290 1.73e-63 204
Msa1294880 AT1G32770.1 41.447 304 122 6 3 261 13 305 3.76e-62 201
Msa1294880 AT1G33280.1 51.691 207 66 5 6 179 8 213 8.01e-61 196
Msa1294880 AT3G61910.1 40.541 296 107 6 3 257 8 275 9.24e-60 194
Msa1294880 AT4G10350.1 59.740 154 34 2 6 131 9 162 1.72e-59 194
Msa1294880 AT1G79580.3 59.615 156 37 3 6 135 17 172 1.30e-57 189
Msa1294880 AT1G79580.5 59.615 156 37 3 6 135 17 172 1.30e-57 189
Msa1294880 AT1G79580.4 59.615 156 37 3 6 135 17 172 1.30e-57 189
Msa1294880 AT1G79580.2 59.615 156 37 3 6 135 17 172 1.30e-57 189
Msa1294880 AT1G79580.1 59.615 156 37 3 6 135 17 172 1.30e-57 189
Msa1294880 AT3G17730.1 46.707 167 62 2 1 140 1 167 1.49e-50 167
Msa1294880 AT3G18400.1 49.682 157 55 2 2 134 1 157 2.29e-50 169
Msa1294880 AT1G65910.1 49.359 156 52 2 1 129 1 156 4.36e-49 172
Msa1294880 AT5G61430.1 50.993 151 47 2 6 129 16 166 1.88e-48 165
Msa1294880 AT5G39610.1 50.327 153 49 2 6 131 20 172 4.47e-48 162
Msa1294880 AT5G17260.1 44.509 173 67 3 1 145 1 172 1.31e-47 166
Msa1294880 AT5G07680.2 49.669 151 49 2 6 129 3 153 2.22e-47 161
Msa1294880 AT3G03200.1 48.171 164 56 4 1 136 1 163 3.45e-47 165
Msa1294880 AT5G07680.1 49.669 151 49 2 6 129 17 167 3.65e-47 161
Msa1294880 AT2G24430.2 49.020 153 52 3 3 129 13 165 6.89e-47 160
Msa1294880 AT2G24430.1 49.020 153 52 3 3 129 13 165 6.89e-47 160
Msa1294880 AT1G54330.1 49.045 157 56 2 1 133 1 157 7.60e-47 160
Msa1294880 AT5G46590.1 47.977 173 60 5 1 144 1 172 2.49e-46 158
Msa1294880 AT3G29035.1 56.693 127 39 1 6 116 24 150 4.10e-46 158
Msa1294880 AT5G46590.2 55.224 134 41 2 1 115 1 134 6.10e-46 157
Msa1294880 AT1G76420.1 50.980 153 49 3 3 129 19 171 7.74e-46 158
Msa1294880 AT5G18270.2 47.239 163 55 4 6 137 21 183 6.02e-45 155
Msa1294880 AT5G18270.1 47.239 163 55 4 6 137 21 183 6.28e-45 155
Msa1294880 AT3G10490.2 38.636 220 104 6 2 192 23 240 7.50e-45 158
Msa1294880 AT3G04060.1 37.778 270 116 11 6 238 20 274 1.43e-44 155
Msa1294880 AT3G15170.1 48.485 165 56 4 3 138 17 181 1.47e-44 154
Msa1294880 AT4G17980.1 52.593 135 44 2 1 115 1 135 1.81e-44 152
Msa1294880 AT1G56010.2 41.294 201 72 5 1 156 14 213 2.27e-44 154
Msa1294880 AT4G17980.2 52.593 135 44 2 1 115 1 135 3.24e-44 152
Msa1294880 AT3G12977.1 45.223 157 60 2 1 131 13 169 5.93e-44 151
Msa1294880 AT3G10490.1 38.991 218 102 6 2 190 23 238 6.80e-44 150
Msa1294880 AT1G69490.1 43.949 157 59 2 3 130 6 162 2.04e-43 150
Msa1294880 AT3G10480.2 44.311 167 65 4 4 143 25 190 2.25e-43 154
Msa1294880 AT3G10480.1 44.048 168 65 4 4 143 25 191 3.13e-43 154
Msa1294880 AT1G77450.1 45.342 161 59 3 7 139 11 170 5.66e-43 148
Msa1294880 AT5G24590.2 49.367 158 52 4 6 135 13 170 1.38e-42 152
Msa1294880 AT5G53950.1 47.097 155 53 3 6 131 17 171 1.45e-42 150
Msa1294880 AT2G33480.2 46.897 145 57 2 6 130 15 159 3.71e-42 146
Msa1294880 AT5G13180.1 47.973 148 54 3 6 130 14 161 4.81e-42 145
Msa1294880 AT2G33480.1 46.259 147 57 2 6 130 15 161 7.24e-42 145
Msa1294880 AT5G04410.1 42.197 173 72 3 4 149 7 178 8.24e-42 152
Msa1294880 AT5G08790.1 45.283 159 56 3 6 134 7 164 2.51e-41 145
Msa1294880 AT4G27410.2 43.396 159 65 2 1 134 9 167 3.74e-41 145
Msa1294880 AT3G15500.1 42.593 162 68 2 1 137 9 170 3.74e-41 145
Msa1294880 AT5G63790.1 44.654 159 57 3 6 134 50 207 4.34e-41 145
Msa1294880 AT5G63790.2 44.654 159 57 3 6 134 60 217 4.82e-41 145
Msa1294880 AT1G26870.1 41.667 168 62 3 2 133 12 179 5.41e-41 147
Msa1294880 AT3G04070.2 42.945 163 56 3 4 129 8 170 8.16e-41 145
Msa1294880 AT1G01720.1 34.483 261 124 8 6 231 7 255 1.04e-40 143
Msa1294880 AT2G43000.1 44.872 156 60 2 8 137 20 175 1.39e-40 142
Msa1294880 AT3G49530.2 42.424 165 67 3 6 142 13 177 2.78e-40 145
Msa1294880 AT4G35580.1 38.776 245 109 10 2 206 6 249 3.11e-40 147
Msa1294880 AT5G39820.1 38.462 182 64 3 3 136 17 198 3.40e-40 143
Msa1294880 AT4G35580.2 38.776 245 109 10 2 206 6 249 3.79e-40 147
Msa1294880 AT4G35580.3 38.776 245 109 10 2 206 6 249 3.94e-40 147
Msa1294880 AT3G49530.1 42.424 165 67 3 6 142 13 177 7.94e-40 145
Msa1294880 AT1G33060.2 39.683 189 76 4 5 162 23 204 9.66e-40 147
Msa1294880 AT1G33060.1 39.683 189 76 4 5 162 23 204 1.03e-39 147
Msa1294880 AT1G52890.1 41.358 162 70 2 1 137 9 170 1.36e-39 141
Msa1294880 AT3G10500.1 42.308 156 63 2 4 132 7 162 2.01e-39 145
Msa1294880 AT4G28530.1 46.951 164 46 6 6 129 10 172 2.42e-39 141
Msa1294880 AT1G61110.1 42.197 173 61 4 6 140 16 187 2.50e-39 140
Msa1294880 AT3G04070.1 48.872 133 47 2 4 115 8 140 5.19e-39 140
Msa1294880 AT4G27410.3 39.205 176 65 2 1 134 9 184 2.16e-38 138
Msa1294880 AT1G32510.1 33.992 253 113 8 1 207 1 245 3.08e-38 137
Msa1294880 AT3G10480.3 37.186 199 63 4 6 143 27 224 1.02e-37 140
Msa1294880 AT5G09330.5 42.308 156 63 2 1 129 1 156 2.88e-37 139
Msa1294880 AT5G09330.2 42.308 156 63 2 1 129 1 156 2.88e-37 139
Msa1294880 AT5G09330.4 42.308 156 63 2 1 129 1 156 2.88e-37 139
Msa1294880 AT5G09330.3 42.308 156 63 2 1 129 1 156 2.88e-37 139
Msa1294880 AT5G09330.1 42.308 156 63 2 1 129 1 156 2.88e-37 139
Msa1294880 AT1G34180.3 43.846 130 55 1 8 119 18 147 3.38e-37 137
Msa1294880 AT4G10350.2 70.455 88 17 1 52 130 27 114 4.34e-37 134
Msa1294880 AT1G34180.1 43.846 130 55 1 8 119 18 147 9.60e-37 138
Msa1294880 AT2G27300.1 38.182 165 82 3 4 149 12 175 1.66e-36 134
Msa1294880 AT5G64060.1 41.667 156 64 2 1 129 1 156 2.50e-36 134
Msa1294880 AT5G22290.1 42.000 150 67 2 1 130 16 165 5.28e-36 132
Msa1294880 AT2G17040.1 36.041 197 94 4 8 172 8 204 1.02e-35 130
Msa1294880 AT3G15510.1 39.053 169 65 3 10 140 21 189 1.07e-35 132
Msa1294880 AT1G34190.1 43.077 130 56 1 8 119 18 147 1.88e-35 134
Msa1294880 AT1G34180.4 40.141 142 55 1 8 119 18 159 1.90e-35 133
Msa1294880 AT3G12910.1 41.860 172 57 5 8 137 23 193 2.44e-35 130
Msa1294880 AT1G34180.2 40.141 142 55 1 8 119 18 159 5.22e-35 133
Msa1294880 AT2G02450.2 43.624 149 60 4 5 129 50 198 6.91e-35 131
Msa1294880 AT2G02450.1 43.624 149 60 4 5 129 50 198 7.79e-35 130
Msa1294880 AT3G44290.2 38.816 152 73 3 8 140 16 166 1.40e-34 125
Msa1294880 AT3G44290.1 38.816 152 73 3 8 140 16 166 5.32e-34 127
Msa1294880 AT5G61430.2 57.778 90 27 1 51 129 14 103 2.53e-32 121
Msa1294880 AT5G04395.1 41.722 151 55 3 3 120 25 175 2.73e-31 115
Msa1294880 AT1G52880.1 39.024 164 63 3 10 136 21 184 4.83e-31 119
Msa1294880 AT1G56010.1 43.939 132 47 2 52 156 15 146 8.57e-31 116
Msa1294880 AT3G12977.2 53.333 90 32 1 52 131 27 116 6.64e-30 113
Msa1294880 AT1G32870.1 40.909 154 64 3 6 132 10 163 3.70e-29 117
Msa1294880 AT1G32870.2 40.909 154 64 3 6 132 10 163 3.73e-29 116
Msa1294880 AT1G32870.3 45.385 130 55 2 6 119 46 175 4.71e-29 116
Msa1294880 AT2G33480.3 47.727 88 37 1 52 130 17 104 5.13e-25 100
Msa1294880 AT3G10490.4 36.879 141 76 5 63 192 2 140 7.14e-22 94.4
Msa1294880 AT3G10490.3 36.879 141 76 5 63 192 2 140 7.14e-22 94.4
Msa1294880 AT5G64530.1 39.167 120 59 3 6 115 3 118 1.36e-20 87.8
Msa1294880 AT5G64530.2 39.167 120 59 3 6 115 3 118 1.99e-20 86.3
Msa1294880 AT2G43000.2 42.268 97 46 1 51 137 1 97 2.08e-20 87.4
Msa1294880 AT5G22380.1 37.037 135 62 3 2 113 1 135 4.17e-20 87.4
Msa1294880 AT3G44350.1 33.987 153 74 5 9 134 8 160 8.04e-20 84.7
Msa1294880 AT3G44350.2 35.156 128 61 3 9 114 8 135 1.05e-19 86.7
Msa1294880 AT4G01550.1 26.848 257 145 10 9 231 7 254 4.05e-18 84.7
Msa1294880 AT4G01520.1 29.319 191 106 6 7 170 5 193 6.83e-18 82.8
Msa1294880 AT4G28530.2 40.310 129 41 5 6 99 10 137 7.49e-18 82.8
Msa1294880 AT4G01540.1 27.692 195 103 6 1 169 1 183 8.79e-18 84.0
Msa1294880 AT4G01540.3 27.692 195 103 6 1 169 1 183 9.22e-18 83.6
Msa1294880 AT4G01540.2 27.692 195 103 6 1 169 1 183 9.66e-18 83.6
Msa1294880 AT4G01540.4 27.692 195 103 6 1 169 1 183 1.03e-17 83.2
Msa1294880 AT1G02250.1 38.462 130 54 5 7 113 4 130 3.32e-17 81.3
Msa1294880 AT1G02230.1 40.000 130 52 6 7 113 4 130 6.55e-17 80.5
Msa1294880 AT3G04420.2 34.375 128 62 3 7 113 4 130 9.47e-17 79.3
Msa1294880 AT3G04420.1 34.375 128 62 3 7 113 4 130 2.02e-16 79.0
Msa1294880 AT5G50820.1 37.500 128 56 4 6 115 17 138 2.90e-16 75.9
Msa1294880 AT1G01010.1 32.653 147 69 6 9 125 6 152 3.22e-16 79.0
Msa1294880 AT5G22290.2 46.154 65 32 1 69 130 2 66 6.72e-15 73.2
Msa1294880 AT1G02220.1 33.333 129 61 4 6 113 3 127 8.64e-14 71.6
Msa1294880 AT3G56530.1 28.358 134 77 3 5 119 51 184 4.06e-11 63.2

Find 67 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATAATGAATTTCAAAA+TGG 0.248762 8_3:-52808708 Msa1294880:CDS
AAGCACTCTTATAGTGAAAA+AGG 0.269311 8_3:+52812154 None:intergenic
TTGTTATGTTCTGATATTAT+TGG 0.276778 8_3:+52808726 None:intergenic
GAGCTACAATGGCAGGGTTC+TGG 0.317074 8_3:-52811159 Msa1294880:CDS
TGATGAAGAAAGTGTATTAA+TGG 0.361903 8_3:-52811971 Msa1294880:five_prime_UTR
GACTCCATCATAGAAATATA+TGG 0.383595 8_3:+52811918 None:intergenic
ATTGGATCATGCATGAATAT+AGG 0.391373 8_3:-52811030 Msa1294880:CDS
TCCCTTGCAGGAAGAAGGTT+GGG 0.394830 8_3:-52809033 Msa1294880:intron
TTGTTTGTTCATCATATAAG+TGG 0.428608 8_3:+52808943 None:intergenic
AAAGAGAGAAAGTGACTGAT+TGG 0.431747 8_3:-52808662 Msa1294880:CDS
CATGTGTCCCACCTGGATTT+CGG 0.432093 8_3:-52811896 Msa1294880:CDS
GTTCCTACTTCAAAGTAGTA+AGG 0.437560 8_3:-52808562 Msa1294880:CDS
CCAACGGATGGAGAGCTTGT+TGG 0.439284 8_3:-52811867 Msa1294880:CDS
AAAGATAAGAAATATCCAAC+AGG 0.439866 8_3:-52811196 Msa1294880:intron
AGTTGAGTCAAGAAGATCAT+AGG 0.449602 8_3:-52808611 Msa1294880:CDS
TGTTCATCATATAAGTGGCT+TGG 0.450848 8_3:+52808948 None:intergenic
GAGGGATCTTGACAAGTTTG+TGG 0.454746 8_3:-52808640 Msa1294880:CDS
TATGAACGAACAAAACTGAT+TGG 0.456318 8_3:-52811109 Msa1294880:CDS
CATCCTTACTACTTTGAAGT+AGG 0.458330 8_3:+52808559 None:intergenic
ACGAATAGAGCTACAATGGC+AGG 0.459411 8_3:-52811166 Msa1294880:CDS
CTTCATGCATTCAGAACAAA+TGG 0.460408 8_3:-52808802 Msa1294880:CDS
AGTGTTCCCTTGCAGGAAGA+AGG 0.464909 8_3:-52809038 Msa1294880:intron
TGTCTTAAGATGAGGTCAAT+GGG 0.475675 8_3:+52808897 None:intergenic
ATACACCGACTTATCTCTTC+CGG 0.477433 8_3:+52811129 None:intergenic
AATACCATATATTTCTATGA+TGG 0.480060 8_3:-52811922 Msa1294880:exon
CTATTCGTTCTCGTCCCTGT+TGG 0.488529 8_3:+52811181 None:intergenic
TACAAAGGAAGAGCACCTAA+TGG 0.488869 8_3:-52811064 Msa1294880:CDS
CTAATGGACAGAAAACTGAT+TGG 0.497399 8_3:-52811048 Msa1294880:CDS
GCAGGGTTCTGGAAAGCAAC+CGG 0.508647 8_3:-52811148 Msa1294880:CDS
GTTGGGTGGAACCGAAATCC+AGG 0.510577 8_3:+52811885 None:intergenic
TTCCCTTGCAGGAAGAAGGT+TGG 0.510912 8_3:-52809034 Msa1294880:intron
TTGTCTTAAGATGAGGTCAA+TGG 0.515328 8_3:+52808896 None:intergenic
GGTGAGAGATAAAGAGTGTG+AGG 0.518897 8_3:+52812054 None:intergenic
CAACAAGCTCTCCATCCGTT+GGG 0.524228 8_3:+52811868 None:intergenic
GAGAGAAAGTGACTGATTGG+AGG 0.524381 8_3:-52808659 Msa1294880:CDS
TAATATACCTTGGAGATCCC+AGG 0.527193 8_3:+52811764 None:intergenic
ATCTATACCGTATTGAACCC+TGG 0.527609 8_3:-52811782 Msa1294880:CDS
TCTATACCGTATTGAACCCT+GGG 0.534125 8_3:-52811781 Msa1294880:CDS
TTTCGGTTCCACCCAACGGA+TGG 0.543349 8_3:-52811879 Msa1294880:CDS
CCAACAAGCTCTCCATCCGT+TGG 0.549429 8_3:+52811867 None:intergenic
GGACTTTCTAGCTGAGGAAG+AGG 0.549801 8_3:+52808777 None:intergenic
AAACAAGTAGCATCATCTCA+AGG 0.554359 8_3:-52808926 Msa1294880:CDS
ACAAGGTCAGATTGTGACAT+TGG 0.564455 8_3:-52808504 Msa1294880:CDS
AAAGTCCCTCTTTAACAAAG+AGG 0.569473 8_3:-52808761 Msa1294880:CDS
GTGTGAATATGTATGTAGAT+AGG 0.571059 8_3:+52812033 None:intergenic
ATGGAGTCATGTGTCCCACC+TGG 0.583453 8_3:-52811903 Msa1294880:CDS
AGAGAAAGTGACTGATTGGA+GGG 0.585369 8_3:-52808658 Msa1294880:CDS
GAACAAAACTGATTGGAATG+AGG 0.589039 8_3:-52811102 Msa1294880:CDS
TGGATTTCGGTTCCACCCAA+CGG 0.599891 8_3:-52811883 Msa1294880:CDS
GGAGATCCCAGGGTTCAATA+CGG 0.603085 8_3:+52811775 None:intergenic
AACAAGTAGCATCATCTCAA+GGG 0.604193 8_3:-52808925 Msa1294880:CDS
AAAGAGGGACTTTCTAGCTG+AGG 0.604723 8_3:+52808771 None:intergenic
CAAGCTCTCCATCCGTTGGG+TGG 0.610660 8_3:+52811871 None:intergenic
AATATACCTTGGAGATCCCA+GGG 0.622309 8_3:+52811765 None:intergenic
AGCAACCGGAAGAGATAAGT+CGG 0.630743 8_3:-52811134 Msa1294880:CDS
TCTGTGGTTGTCTTAAGATG+AGG 0.635609 8_3:+52808889 None:intergenic
ATTGAACCCTGGGATCTCCA+AGG 0.636482 8_3:-52811771 Msa1294880:intron
AAGAAAGTGTATTAATGGTG+TGG 0.642690 8_3:-52811966 Msa1294880:five_prime_UTR
CGAATAGAGCTACAATGGCA+GGG 0.643373 8_3:-52811165 Msa1294880:CDS
GAGAACGAATAGAGCTACAA+TGG 0.650530 8_3:-52811170 Msa1294880:CDS
AAGTAGCATCATCTCAAGGG+TGG 0.653779 8_3:-52808922 Msa1294880:CDS
AAAGTGTATTAATGGTGTGG+TGG 0.662263 8_3:-52811963 Msa1294880:five_prime_UTR
GGGTGGAACCGAAATCCAGG+TGG 0.677530 8_3:+52811888 None:intergenic
GTCTTAAGATGAGGTCAATG+GGG 0.688746 8_3:+52808898 None:intergenic
GGTGGAACCGAAATCCAGGT+GGG 0.699498 8_3:+52811889 None:intergenic
AAGATAAGAAATATCCAACA+GGG 0.735024 8_3:-52811195 Msa1294880:CDS
TCATCTTAAGACAACCACAG+AGG 0.769996 8_3:-52808887 Msa1294880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTATTTTATTTTATAT+AGG + chr8_3:52810439-52810458 None:intergenic 0.0%
!!! TTATTATTATTTCTTTTTGT+TGG - chr8_3:52808511-52808530 Msa1294880:CDS 10.0%
!! TATTTAATTAATTAATCAAG+GGG + chr8_3:52809753-52809772 None:intergenic 10.0%
!!! TAGTTTTTTACTTTTTTTTA+CGG - chr8_3:52810540-52810559 Msa1294880:intron 10.0%
!!! CATTAAAAAAAATCTAATTT+TGG - chr8_3:52810682-52810701 Msa1294880:intron 10.0%
!! AAATGAATAAAAATAAAAGA+AGG + chr8_3:52810736-52810755 None:intergenic 10.0%
!!! TTGTTTAAAACTTTTTAAAT+TGG + chr8_3:52811009-52811028 None:intergenic 10.0%
!!! AATTATCATAAGTTTTTTTT+TGG - chr8_3:52811439-52811458 Msa1294880:intron 10.0%
!! AGAAAAAAATTTAATTCAAA+AGG - chr8_3:52811510-52811529 Msa1294880:intron 10.0%
!! AAAAAAAGTTGAAATATTGA+CGG - chr8_3:52809088-52809107 Msa1294880:intron 15.0%
!!! AAAAGTATATATATGTTGAA+AGG - chr8_3:52809349-52809368 Msa1294880:intron 15.0%
!!! CATCATTAGTTTTATTTTTT+AGG - chr8_3:52810204-52810223 Msa1294880:intron 15.0%
!!! TCAACTAAAATGTTTTATTA+TGG - chr8_3:52810288-52810307 Msa1294880:intron 15.0%
!! TCTCTTAAATGTTAATTATT+TGG - chr8_3:52810469-52810488 Msa1294880:intron 15.0%
!!! AAAAAAATGGTTTTTTTTCT+AGG + chr8_3:52810499-52810518 None:intergenic 15.0%
!! ACACAATATATGTAAAAAAA+TGG + chr8_3:52810512-52810531 None:intergenic 15.0%
!!! ATTTTTATTCATTTTAAGGA+TGG - chr8_3:52810742-52810761 Msa1294880:intron 15.0%
!! TAAGTCAAATAAAATACAAT+CGG + chr8_3:52810799-52810818 None:intergenic 15.0%
!! ATTGTGTTAAATTTATCAAT+AGG - chr8_3:52811051-52811070 Msa1294880:CDS 15.0%
!! AACAAATACATTAATTAGTT+TGG + chr8_3:52811144-52811163 None:intergenic 15.0%
!!! GTGTTAATAACTTTATTTAA+CGG - chr8_3:52811185-52811204 Msa1294880:CDS 15.0%
!! TTATTTAAAGGTGAATATTT+CGG - chr8_3:52811342-52811361 Msa1294880:intron 15.0%
!!! TTTATGTTCTAGTAATTTTT+TGG + chr8_3:52811481-52811500 None:intergenic 15.0%
!! AACAATAATGAATTTCAAAA+TGG - chr8_3:52811933-52811952 Msa1294880:five_prime_UTR 15.0%
!!! AATACCATATATTTCTATGA+TGG - chr8_3:52808719-52808738 Msa1294880:CDS 20.0%
!! GTAATATAAGTAATATACCT+TGG + chr8_3:52808890-52808909 None:intergenic 20.0%
!! TTTAAACAAGAACACAAAAT+AGG + chr8_3:52809332-52809351 None:intergenic 20.0%
!! TTATAGAAGTCTTGATTTAA+AGG - chr8_3:52809870-52809889 Msa1294880:intron 20.0%
!! TATAGAAGTCTTGATTTAAA+GGG - chr8_3:52809871-52809890 Msa1294880:intron 20.0%
!! AATACTATAAAGTACAACTT+TGG - chr8_3:52809998-52810017 Msa1294880:intron 20.0%
!! TTACGAATATTGTTAATTAG+TGG + chr8_3:52810028-52810047 None:intergenic 20.0%
!!! ATCATCTTTCTTTTACTTTT+TGG - chr8_3:52810154-52810173 Msa1294880:intron 20.0%
!!! CTAAAATGTTTTATTATGGA+TGG - chr8_3:52810292-52810311 Msa1294880:intron 20.0%
!!! GGATTGTATTGTATTTTTAT+TGG - chr8_3:52810561-52810580 Msa1294880:intron 20.0%
!! AAACTTTGCAAAAGTTAAAA+GGG - chr8_3:52810862-52810881 Msa1294880:intron 20.0%
!! TATTTAAAGGTGAATATTTC+GGG - chr8_3:52811343-52811362 Msa1294880:intron 20.0%
!! AACCCGAATTTAAATTAATT+CGG - chr8_3:52811368-52811387 Msa1294880:intron 20.0%
!! AACCCGAATTAATTTAAATT+CGG + chr8_3:52811374-52811393 None:intergenic 20.0%
!! TTGTTATGTTCTGATATTAT+TGG + chr8_3:52811918-52811937 None:intergenic 20.0%
!! TGATGAAGAAAGTGTATTAA+TGG - chr8_3:52808670-52808689 Msa1294880:CDS 25.0%
!! TATTTTATGCGTTACTCTAT+AGG + chr8_3:52809256-52809275 None:intergenic 25.0%
! TGTTAAAACCCTAATCAATA+GGG + chr8_3:52809293-52809312 None:intergenic 25.0%
! AAAGATAAGAAATATCCAAC+AGG - chr8_3:52809445-52809464 Msa1294880:intron 25.0%
! AAGATAAGAAATATCCAACA+GGG - chr8_3:52809446-52809465 Msa1294880:intron 25.0%
! TCAACTCAACACATAATATA+TGG + chr8_3:52809692-52809711 None:intergenic 25.0%
! TCAAACTTGATTAGTAACTT+TGG - chr8_3:52809718-52809737 Msa1294880:intron 25.0%
! TTCGTAAATAATATTCACCA+AGG - chr8_3:52810041-52810060 Msa1294880:intron 25.0%
! AATCAGTTGATCTTGATTAA+TGG + chr8_3:52810340-52810359 None:intergenic 25.0%
! AATTCATTCGTTAGAGAATT+AGG + chr8_3:52810403-52810422 None:intergenic 25.0%
!! TTTTATTGGAGTGACAAAAA+AGG - chr8_3:52810575-52810594 Msa1294880:intron 25.0%
! AAAAAACCTTTACCCTTAAA+AGG + chr8_3:52810643-52810662 None:intergenic 25.0%
!! TCATTAGATGATCCTTTTAT+TGG - chr8_3:52810773-52810792 Msa1294880:intron 25.0%
! GAAACTTTGCAAAAGTTAAA+AGG - chr8_3:52810861-52810880 Msa1294880:intron 25.0%
! AACTTTGCAAAAGTTAAAAG+GGG - chr8_3:52810863-52810882 Msa1294880:intron 25.0%
!!! ATGATGTTTTGAATGTGAAA+AGG + chr8_3:52810913-52810932 None:intergenic 25.0%
!! ATTTTAAATATGGAGAAGTG+GGG + chr8_3:52811280-52811299 None:intergenic 25.0%
!! CATTTTAAATATGGAGAAGT+GGG + chr8_3:52811281-52811300 None:intergenic 25.0%
!! ACATTTTAAATATGGAGAAG+TGG + chr8_3:52811282-52811301 None:intergenic 25.0%
!! AAGCTCACACATTTTAAATA+TGG + chr8_3:52811290-52811309 None:intergenic 25.0%
! ACCCGAATTTAAATTAATTC+GGG - chr8_3:52811369-52811388 Msa1294880:intron 25.0%
! ACCCGAATTAATTTAAATTC+GGG + chr8_3:52811373-52811392 None:intergenic 25.0%
! AAGCAAAAACAAATGAAAGA+TGG - chr8_3:52811667-52811686 Msa1294880:intron 25.0%
! AGCAAAAACAAATGAAAGAT+GGG - chr8_3:52811668-52811687 Msa1294880:intron 25.0%
! TTGTTTGTTCATCATATAAG+TGG + chr8_3:52811701-52811720 None:intergenic 25.0%
!! TGTTTGTACATGAAATTTTG+AGG + chr8_3:52811786-52811805 None:intergenic 25.0%
!!! TAAGCTCATTTTTAACTACA+AGG - chr8_3:52812120-52812139 Msa1294880:five_prime_UTR 25.0%
AAGCACTCTTATAGTGAAAA+AGG + chr8_3:52808490-52808509 None:intergenic 30.0%
AGTGAAGCAAAAAGCTAAAA+AGG + chr8_3:52808545-52808564 None:intergenic 30.0%
GTGTGAATATGTATGTAGAT+AGG + chr8_3:52808611-52808630 None:intergenic 30.0%
! AAGAAAGTGTATTAATGGTG+TGG - chr8_3:52808675-52808694 Msa1294880:CDS 30.0%
GACTCCATCATAGAAATATA+TGG + chr8_3:52808726-52808745 None:intergenic 30.0%
! TTTGATCAACCCTATTGATT+AGG - chr8_3:52809281-52809300 Msa1294880:intron 30.0%
! TTGATCAACCCTATTGATTA+GGG - chr8_3:52809282-52809301 Msa1294880:intron 30.0%
CTGTTAAAACCCTAATCAAT+AGG + chr8_3:52809294-52809313 None:intergenic 30.0%
TATACAGAGAGATGTAGAAT+TGG - chr8_3:52809385-52809404 Msa1294880:intron 30.0%
ATACAGAGAGATGTAGAATT+GGG - chr8_3:52809386-52809405 Msa1294880:intron 30.0%
TATGAACGAACAAAACTGAT+TGG - chr8_3:52809532-52809551 Msa1294880:intron 30.0%
ATTGGATCATGCATGAATAT+AGG - chr8_3:52809611-52809630 Msa1294880:intron 30.0%
TATATGTATATACTTGCCTG+TGG + chr8_3:52809661-52809680 None:intergenic 30.0%
!! CTTGTTTTCTTGTCTGAAAA+AGG + chr8_3:52809804-52809823 None:intergenic 30.0%
!!! CTTTTTCAGACAAGAAAACA+AGG - chr8_3:52809802-52809821 Msa1294880:intron 30.0%
! ACAAGGATGTTTCTATAAGT+TGG - chr8_3:52809819-52809838 Msa1294880:intron 30.0%
GTTTAGTCTAAGCATTTGAT+TGG - chr8_3:52809947-52809966 Msa1294880:intron 30.0%
ACGTTATATAACGAGTTTAG+AGG + chr8_3:52809975-52809994 None:intergenic 30.0%
AAAAAAGTTTGTACGTACCT+TGG + chr8_3:52810061-52810080 None:intergenic 30.0%
!!! TACGTACAAACTTTTTTGCT+AGG - chr8_3:52810064-52810083 Msa1294880:intron 30.0%
!!! ACGTACAAACTTTTTTGCTA+GGG - chr8_3:52810065-52810084 Msa1294880:intron 30.0%
TATGTGTGTGTATATATGTG+TGG + chr8_3:52810617-52810636 None:intergenic 30.0%
! ACACACATATTGCCTTTTAA+GGG - chr8_3:52810628-52810647 Msa1294880:intron 30.0%
!! ATATTGCCTTTTAAGGGTAA+AGG - chr8_3:52810634-52810653 Msa1294880:intron 30.0%
AAATACAATCGGCCAATAAA+AGG + chr8_3:52810788-52810807 None:intergenic 30.0%
! TTGCAAAGTTTCAGTCTTTT+TGG + chr8_3:52810853-52810872 None:intergenic 30.0%
ACTTTGCAAAAGTTAAAAGG+GGG - chr8_3:52810864-52810883 Msa1294880:intron 30.0%
AGACTTAAATTTAGAGACGA+AGG + chr8_3:52810979-52810998 None:intergenic 30.0%
TGCATAATATATGCAGAAGT+CGG - chr8_3:52811241-52811260 Msa1294880:intron 30.0%
CAAAAGGAGTTTAGAGAAAA+TGG - chr8_3:52811526-52811545 Msa1294880:intron 30.0%
! TTTTGCCTCTTTGTTAAAGA+GGG + chr8_3:52811888-52811907 None:intergenic 30.0%
CACTCTTATAGTGAAAAAGG+TGG + chr8_3:52808487-52808506 None:intergenic 35.0%
AAAGTGTATTAATGGTGTGG+TGG - chr8_3:52808678-52808697 Msa1294880:CDS 35.0%
AACCATGTTCAACATAGTGA+TGG - chr8_3:52808953-52808972 Msa1294880:CDS 35.0%
TACCATCACTATGTTGAACA+TGG + chr8_3:52808958-52808977 None:intergenic 35.0%
GAACAAAACTGATTGGAATG+AGG - chr8_3:52809539-52809558 Msa1294880:intron 35.0%
! AAGACACTCGTTTTCTACAA+AGG - chr8_3:52809562-52809581 Msa1294880:intron 35.0%
! CAATCAGTTTTCTGTCCATT+AGG + chr8_3:52809595-52809614 None:intergenic 35.0%
! CTAATGGACAGAAAACTGAT+TGG - chr8_3:52809593-52809612 Msa1294880:intron 35.0%
! TATAAGTTGGAGAATGAGCA+TGG - chr8_3:52809832-52809851 Msa1294880:intron 35.0%
GAAAAAGACACATCAAGAGA+AGG + chr8_3:52809917-52809936 None:intergenic 35.0%
!!! AGTGACTTTTGACTTCTTTC+TGG + chr8_3:52810109-52810128 None:intergenic 35.0%
! CACACACATATTGCCTTTTA+AGG - chr8_3:52810627-52810646 Msa1294880:intron 35.0%
!!! AAGGGTAAAGGTTTTTTCTC+AGG - chr8_3:52810646-52810665 Msa1294880:intron 35.0%
GCATAATATATGCAGAAGTC+GGG - chr8_3:52811242-52811261 Msa1294880:intron 35.0%
CATAATATATGCAGAAGTCG+GGG - chr8_3:52811243-52811262 Msa1294880:intron 35.0%
TGTTCATCATATAAGTGGCT+TGG + chr8_3:52811696-52811715 None:intergenic 35.0%
AAACAAGTAGCATCATCTCA+AGG - chr8_3:52811715-52811734 Msa1294880:intron 35.0%
AACAAGTAGCATCATCTCAA+GGG - chr8_3:52811716-52811735 Msa1294880:intron 35.0%
TGTCTTAAGATGAGGTCAAT+GGG + chr8_3:52811747-52811766 None:intergenic 35.0%
TTGTCTTAAGATGAGGTCAA+TGG + chr8_3:52811748-52811767 None:intergenic 35.0%
CTTCATGCATTCAGAACAAA+TGG - chr8_3:52811839-52811858 Msa1294880:CDS 35.0%
AAAGTCCCTCTTTAACAAAG+AGG - chr8_3:52811880-52811899 Msa1294880:CDS 35.0%
! GTTTTGCCTCTTTGTTAAAG+AGG + chr8_3:52811889-52811908 None:intergenic 35.0%
!!! CTCTCTTTTGTTGTTGATGT+TGG + chr8_3:52811967-52811986 None:intergenic 35.0%
AAAGAGAGAAAGTGACTGAT+TGG - chr8_3:52811979-52811998 Msa1294880:five_prime_UTR 35.0%
AGTTGAGTCAAGAAGATCAT+AGG - chr8_3:52812030-52812049 Msa1294880:five_prime_UTR 35.0%
GTTCCTACTTCAAAGTAGTA+AGG - chr8_3:52812079-52812098 Msa1294880:five_prime_UTR 35.0%
!! CATCCTTACTACTTTGAAGT+AGG + chr8_3:52812085-52812104 None:intergenic 35.0%
ATCTATACCGTATTGAACCC+TGG - chr8_3:52808859-52808878 Msa1294880:CDS 40.0%
TCTATACCGTATTGAACCCT+GGG - chr8_3:52808860-52808879 Msa1294880:CDS 40.0%
AATATACCTTGGAGATCCCA+GGG + chr8_3:52808879-52808898 None:intergenic 40.0%
TAATATACCTTGGAGATCCC+AGG + chr8_3:52808880-52808899 None:intergenic 40.0%
GAGATGTAGAATTGGGAATG+AGG - chr8_3:52809393-52809412 Msa1294880:intron 40.0%
GAGAACGAATAGAGCTACAA+TGG - chr8_3:52809471-52809490 Msa1294880:intron 40.0%
!! ATACACCGACTTATCTCTTC+CGG + chr8_3:52809515-52809534 None:intergenic 40.0%
!! TACAAAGGAAGAGCACCTAA+TGG - chr8_3:52809577-52809596 Msa1294880:intron 40.0%
ATGTATATACTTGCCTGTGG+AGG + chr8_3:52809658-52809677 None:intergenic 40.0%
!!! GGTTAGAGAGTTTTGAAGAG+AGG - chr8_3:52810225-52810244 Msa1294880:intron 40.0%
TATCAACTGAGCTAAGGTCA+CGG + chr8_3:52811214-52811233 None:intergenic 40.0%
! TGACCTTAGCTCAGTTGATA+GGG - chr8_3:52811214-52811233 Msa1294880:intron 40.0%
TAAATTGAGTGTTCCCTTGC+AGG - chr8_3:52811596-52811615 Msa1294880:intron 40.0%
GTCTTAAGATGAGGTCAATG+GGG + chr8_3:52811746-52811765 None:intergenic 40.0%
TCTGTGGTTGTCTTAAGATG+AGG + chr8_3:52811755-52811774 None:intergenic 40.0%
TCATCTTAAGACAACCACAG+AGG - chr8_3:52811754-52811773 Msa1294880:intron 40.0%
!!! TTTTGAGGTGAAATCCTCTG+TGG + chr8_3:52811771-52811790 None:intergenic 40.0%
AGAGAAAGTGACTGATTGGA+GGG - chr8_3:52811983-52812002 Msa1294880:five_prime_UTR 40.0%
ACAAGGTCAGATTGTGACAT+TGG - chr8_3:52812137-52812156 Msa1294880:five_prime_UTR 40.0%
! GGTGAGAGATAAAGAGTGTG+AGG + chr8_3:52808590-52808609 None:intergenic 45.0%
ACGAATAGAGCTACAATGGC+AGG - chr8_3:52809475-52809494 Msa1294880:intron 45.0%
CGAATAGAGCTACAATGGCA+GGG - chr8_3:52809476-52809495 Msa1294880:intron 45.0%
AGCAACCGGAAGAGATAAGT+CGG - chr8_3:52809507-52809526 Msa1294880:intron 45.0%
AGTTGAAAATGCACCTCCAC+AGG - chr8_3:52809642-52809661 Msa1294880:intron 45.0%
GCTGAGATCACTAACTAGAG+AGG + chr8_3:52810318-52810337 None:intergenic 45.0%
ATCAACTGAGCTAAGGTCAC+GGG + chr8_3:52811213-52811232 None:intergenic 45.0%
GTGACCTTAGCTCAGTTGAT+AGG - chr8_3:52811213-52811232 Msa1294880:intron 45.0%
TGTCCCTATCAACTGAGCTA+AGG + chr8_3:52811220-52811239 None:intergenic 45.0%
! ATATGGAGAAGTGGGGTATC+CGG + chr8_3:52811273-52811292 None:intergenic 45.0%
ATGTGTGAGCTTCAGTCACT+AGG - chr8_3:52811298-52811317 Msa1294880:intron 45.0%
AAGTAGCATCATCTCAAGGG+TGG - chr8_3:52811719-52811738 Msa1294880:intron 45.0%
!! AAAGAGGGACTTTCTAGCTG+AGG + chr8_3:52811873-52811892 None:intergenic 45.0%
GAGAGAAAGTGACTGATTGG+AGG - chr8_3:52811982-52812001 Msa1294880:five_prime_UTR 45.0%
GAGGGATCTTGACAAGTTTG+TGG - chr8_3:52812001-52812020 Msa1294880:five_prime_UTR 45.0%
!! ATATTTAATTAATTAATCAA+GGG + chr8_3:52809754-52809773 None:intergenic 5.0%
!! AATATTTAATTAATTAATCA+AGG + chr8_3:52809755-52809774 None:intergenic 5.0%
!!! TTTTATTTTTATTCATTTTA+AGG - chr8_3:52810738-52810757 Msa1294880:intron 5.0%
!!! AAAAAAAAAACTTTATTTAA+AGG - chr8_3:52811330-52811349 Msa1294880:intron 5.0%
CATGTGTCCCACCTGGATTT+CGG - chr8_3:52808745-52808764 Msa1294880:CDS 50.0%
TGGATTTCGGTTCCACCCAA+CGG - chr8_3:52808758-52808777 Msa1294880:CDS 50.0%
CAACAAGCTCTCCATCCGTT+GGG + chr8_3:52808776-52808795 None:intergenic 50.0%
GGAGATCCCAGGGTTCAATA+CGG + chr8_3:52808869-52808888 None:intergenic 50.0%
ATTGAACCCTGGGATCTCCA+AGG - chr8_3:52808870-52808889 Msa1294880:CDS 50.0%
GGAATGAGGAGCAACATGAG+TGG - chr8_3:52809407-52809426 Msa1294880:intron 50.0%
CTATTCGTTCTCGTCCCTGT+TGG + chr8_3:52809463-52809482 None:intergenic 50.0%
TCAACTGAGCTAAGGTCACG+GGG + chr8_3:52811212-52811231 None:intergenic 50.0%
! TATGGAGAAGTGGGGTATCC+GGG + chr8_3:52811272-52811291 None:intergenic 50.0%
AGTGTTCCCTTGCAGGAAGA+AGG - chr8_3:52811603-52811622 Msa1294880:intron 50.0%
TTCCCTTGCAGGAAGAAGGT+TGG - chr8_3:52811607-52811626 Msa1294880:intron 50.0%
TCCCTTGCAGGAAGAAGGTT+GGG - chr8_3:52811608-52811627 Msa1294880:intron 50.0%
ACCCAACCTTCTTCCTGCAA+GGG + chr8_3:52811612-52811631 None:intergenic 50.0%
AACCCAACCTTCTTCCTGCA+AGG + chr8_3:52811613-52811632 None:intergenic 50.0%
!! GGACTTTCTAGCTGAGGAAG+AGG + chr8_3:52811867-52811886 None:intergenic 50.0%
ATGGAGTCATGTGTCCCACC+TGG - chr8_3:52808738-52808757 Msa1294880:CDS 55.0%
GGTGGAACCGAAATCCAGGT+GGG + chr8_3:52808755-52808774 None:intergenic 55.0%
GTTGGGTGGAACCGAAATCC+AGG + chr8_3:52808759-52808778 None:intergenic 55.0%
TTTCGGTTCCACCCAACGGA+TGG - chr8_3:52808762-52808781 Msa1294880:CDS 55.0%
CCAACAAGCTCTCCATCCGT+TGG + chr8_3:52808777-52808796 None:intergenic 55.0%
CCAACGGATGGAGAGCTTGT+TGG - chr8_3:52808774-52808793 Msa1294880:CDS 55.0%
GAGCTACAATGGCAGGGTTC+TGG - chr8_3:52809482-52809501 Msa1294880:intron 55.0%
!! GCAGGGTTCTGGAAAGCAAC+CGG - chr8_3:52809493-52809512 Msa1294880:intron 55.0%
ATGCAGAAGTCGGGGAATCC+CGG - chr8_3:52811251-52811270 Msa1294880:intron 55.0%
GGGTGGAACCGAAATCCAGG+TGG + chr8_3:52808756-52808775 None:intergenic 60.0%
CAAGCTCTCCATCCGTTGGG+TGG + chr8_3:52808773-52808792 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 52808482 52812181 52808482 ID=Msa1294880;Name=Msa1294880
chr8_3 mRNA 52808482 52812181 52808482 ID=Msa1294880-mRNA-1;Parent=Msa1294880;Name=Msa1294880-mRNA-1;_AED=0.13;_eAED=0.13;_QI=253|0|0.33|1|0|0.66|3|0|304
chr8_3 exon 52808482 52809045 52808482 ID=Msa1294880-mRNA-1:exon:15063;Parent=Msa1294880-mRNA-1
chr8_3 exon 52811021 52811214 52811021 ID=Msa1294880-mRNA-1:exon:15062;Parent=Msa1294880-mRNA-1
chr8_3 exon 52811772 52812181 52811772 ID=Msa1294880-mRNA-1:exon:15061;Parent=Msa1294880-mRNA-1
chr8_3 five_prime_UTR 52811929 52812181 52811929 ID=Msa1294880-mRNA-1:five_prime_utr;Parent=Msa1294880-mRNA-1
chr8_3 CDS 52811772 52811928 52811772 ID=Msa1294880-mRNA-1:cds;Parent=Msa1294880-mRNA-1
chr8_3 CDS 52811021 52811214 52811021 ID=Msa1294880-mRNA-1:cds;Parent=Msa1294880-mRNA-1
chr8_3 CDS 52808482 52809045 52808482 ID=Msa1294880-mRNA-1:cds;Parent=Msa1294880-mRNA-1
Gene Sequence

>Msa1294880

ATGATGGAGTCATGTGTCCCACCTGGATTTCGGTTCCACCCAACGGATGGAGAGCTTGTTGGTTATTATCTTAGAAAGAAAGTAGCTTCTCACAAGATTGATCTTGATGTTATCAAAGAGATTGATCTATACCGTATTGAACCCTGGGATCTCCAAGATAAGAAATATCCAACAGGGACGAGAACGAATAGAGCTACAATGGCAGGGTTCTGGAAAGCAACCGGAAGAGATAAGTCGGTGTATGAACGAACAAAACTGATTGGAATGAGGAAGACACTCGTTTTCTACAAAGGAAGAGCACCTAATGGACAGAAAACTGATTGGATCATGCATGAATATAGGCTTGAAACAGAAGAAGGTTGGGTTGTGTGCAAAGCATTCAAGAAAAAAACTACTGTGCAAGCAAAAACAAATGAAAGATGGGATCCAAGCCACTTATATGATGAACAAACAAGTAGCATCATCTCAAGGGTGGACCCCATTGACCTCATCTTAAGACAACCACAGAGGATTTCACCTCAAAATTTCATGTACAAACAAGAGATAGAAGCAGAAGCAGATACATTATTAAGCTTCATGCATTCAGAACAAATGGTACCTCTTCCTCAGCTAGAAAGTCCCTCTTTAACAAAGAGGCAAAACTCAATGCCAATAATATCAGAACATAACAATAATGAATTTCAAAATGGATTATTATCCAACATCAACAACAAAAGAGAGAAAGTGACTGATTGGAGGGATCTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGATCATAGGCATGAAACAAGCTCAGACATGTCATTGTTCCTACTTCAAAGTAGTAAGGATGATGAAGAGAACAAGTTAAGCTCATTTTTAACTACAAGGTCAGATTGTGACATTGGTATATGTGTATTTGAAAATTAA
Protein sequence

>Msa1294880

MMESCVPPGFRFHPTDGELVGYYLRKKVASHKIDLDVIKEIDLYRIEPWDLQDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETEEGWVVCKAFKKKTTVQAKTNERWDPSHLYDEQTSSIISRVDPIDLILRQPQRISPQNFMYKQEIEAEADTLLSFMHSEQMVPLPQLESPSLTKRQNSMPIISEHNNNEFQNGLLSNINNKREKVTDWRDLDKFVASQLSQEDHRHETSSDMSLFLLQSSKDDEENKLSSFLTTRSDCDIGICVFEN*