Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294990 | XP_003629365.1 | 95.222 | 293 | 12 | 1 | 50 | 342 | 1 | 291 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294990 | sp|Q9FH57|GATA5_ARATH | 45.141 | 319 | 134 | 8 | 56 | 337 | 3 | 317 | 9.94e-67 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294990 | G7LD10 | 95.222 | 293 | 12 | 1 | 50 | 342 | 1 | 291 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1294990 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294990 | MtrunA17_Chr8g0372291 | 95.222 | 293 | 12 | 1 | 50 | 342 | 1 | 291 | 0.0 | 523 |
| Msa1294990 | MtrunA17_Chr5g0404981 | 46.067 | 356 | 133 | 12 | 29 | 341 | 33 | 372 | 5.50e-71 | 226 |
| Msa1294990 | MtrunA17_Chr4g0035891 | 40.656 | 305 | 140 | 9 | 50 | 338 | 1 | 280 | 2.70e-56 | 185 |
| Msa1294990 | MtrunA17_Chr3g0145121 | 41.304 | 276 | 141 | 7 | 74 | 339 | 21 | 285 | 3.02e-53 | 177 |
| Msa1294990 | MtrunA17_Chr8g0340401 | 39.716 | 282 | 120 | 8 | 90 | 338 | 31 | 295 | 1.69e-49 | 169 |
| Msa1294990 | MtrunA17_Chr3g0140331 | 41.538 | 260 | 140 | 4 | 89 | 339 | 67 | 323 | 5.81e-48 | 165 |
| Msa1294990 | MtrunA17_Chr1g0146231 | 40.569 | 281 | 134 | 9 | 92 | 339 | 24 | 304 | 1.18e-46 | 161 |
| Msa1294990 | MtrunA17_Chr6g0461591 | 40.541 | 222 | 80 | 7 | 164 | 333 | 35 | 256 | 9.13e-40 | 141 |
| Msa1294990 | MtrunA17_Chr7g0253101 | 42.661 | 218 | 79 | 7 | 158 | 333 | 39 | 252 | 4.59e-37 | 134 |
| Msa1294990 | MtrunA17_Chr1g0169431 | 73.333 | 75 | 20 | 0 | 267 | 341 | 170 | 244 | 7.96e-36 | 130 |
| Msa1294990 | MtrunA17_Chr1g0213161 | 39.070 | 215 | 84 | 8 | 164 | 337 | 14 | 222 | 4.36e-35 | 128 |
| Msa1294990 | MtrunA17_Chr2g0326771 | 52.083 | 144 | 52 | 6 | 202 | 333 | 142 | 280 | 1.03e-33 | 126 |
| Msa1294990 | MtrunA17_Chr5g0395391 | 68.000 | 75 | 24 | 0 | 267 | 341 | 268 | 342 | 1.62e-32 | 124 |
| Msa1294990 | MtrunA17_Chr5g0395391 | 71.212 | 66 | 19 | 0 | 267 | 332 | 166 | 231 | 3.08e-29 | 115 |
| Msa1294990 | MtrunA17_Chr1g0199671 | 36.226 | 265 | 95 | 9 | 138 | 335 | 51 | 308 | 2.87e-32 | 123 |
| Msa1294990 | MtrunA17_Chr4g0028961 | 67.532 | 77 | 23 | 1 | 267 | 341 | 230 | 306 | 5.28e-32 | 122 |
| Msa1294990 | MtrunA17_Chr7g0232671 | 56.452 | 62 | 27 | 0 | 269 | 330 | 187 | 248 | 2.42e-19 | 86.3 |
| Msa1294990 | MtrunA17_Chr7g0232701 | 54.839 | 62 | 28 | 0 | 269 | 330 | 73 | 134 | 1.16e-17 | 78.6 |
| Msa1294990 | MtrunA17_Chr7g0232681 | 30.508 | 177 | 108 | 4 | 156 | 330 | 30 | 193 | 2.14e-17 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294990 | AT5G66320.2 | 45.141 | 319 | 134 | 8 | 56 | 337 | 3 | 317 | 1.01e-67 | 216 |
| Msa1294990 | AT5G66320.1 | 45.141 | 319 | 134 | 8 | 56 | 337 | 3 | 317 | 1.01e-67 | 216 |
| Msa1294990 | AT3G51080.1 | 45.455 | 275 | 118 | 6 | 92 | 341 | 26 | 293 | 5.07e-60 | 195 |
| Msa1294990 | AT4G36240.1 | 42.292 | 253 | 124 | 5 | 89 | 341 | 6 | 236 | 1.37e-52 | 174 |
| Msa1294990 | AT4G32890.1 | 40.072 | 277 | 110 | 8 | 92 | 338 | 16 | 266 | 1.23e-50 | 171 |
| Msa1294990 | AT4G34680.1 | 39.116 | 294 | 129 | 10 | 50 | 338 | 1 | 249 | 4.11e-46 | 158 |
| Msa1294990 | AT4G34680.2 | 39.116 | 294 | 129 | 10 | 50 | 338 | 1 | 249 | 4.11e-46 | 158 |
| Msa1294990 | AT3G60530.1 | 45.989 | 187 | 77 | 4 | 151 | 337 | 64 | 226 | 6.07e-44 | 151 |
| Msa1294990 | AT2G45050.1 | 45.078 | 193 | 89 | 5 | 153 | 339 | 68 | 249 | 1.57e-42 | 149 |
| Msa1294990 | AT5G25830.1 | 38.571 | 280 | 134 | 10 | 93 | 338 | 13 | 288 | 3.59e-42 | 149 |
| Msa1294990 | AT3G24050.1 | 67.901 | 81 | 26 | 0 | 255 | 335 | 180 | 260 | 1.42e-35 | 130 |
| Msa1294990 | AT1G08010.2 | 70.833 | 72 | 21 | 0 | 266 | 337 | 217 | 288 | 6.78e-33 | 124 |
| Msa1294990 | AT1G08010.1 | 70.833 | 72 | 21 | 0 | 266 | 337 | 217 | 288 | 6.78e-33 | 124 |
| Msa1294990 | AT1G08010.3 | 70.833 | 72 | 21 | 0 | 266 | 337 | 217 | 288 | 6.78e-33 | 124 |
| Msa1294990 | AT3G54810.1 | 76.471 | 68 | 16 | 0 | 269 | 336 | 229 | 296 | 1.50e-31 | 121 |
| Msa1294990 | AT3G54810.2 | 76.471 | 68 | 16 | 0 | 269 | 336 | 229 | 296 | 1.50e-31 | 121 |
| Msa1294990 | AT1G08000.2 | 69.444 | 72 | 22 | 0 | 266 | 337 | 215 | 286 | 8.54e-31 | 119 |
| Msa1294990 | AT1G08000.1 | 69.444 | 72 | 22 | 0 | 266 | 337 | 215 | 286 | 8.54e-31 | 119 |
| Msa1294990 | AT3G45170.1 | 65.714 | 70 | 24 | 0 | 271 | 340 | 117 | 186 | 3.77e-29 | 111 |
| Msa1294990 | AT2G28340.1 | 64.615 | 65 | 23 | 0 | 271 | 335 | 193 | 257 | 9.78e-25 | 102 |
| Msa1294990 | AT2G18380.1 | 33.088 | 136 | 77 | 4 | 167 | 301 | 2 | 124 | 8.55e-12 | 64.3 |
| Msa1294990 | AT5G26930.1 | 57.143 | 42 | 18 | 0 | 263 | 304 | 20 | 61 | 5.54e-11 | 59.7 |
Find 78 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCGCATCTCAATAACTTTC+CGG | 0.265019 | 8_3:+52942847 | None:intergenic |
| CGGAAGAAGGAGGTTGTTCC+CGG | 0.283078 | 8_3:-52942825 | Msa1294990:CDS |
| TGGAGTGTGAAATTTGATTT+TGG | 0.303695 | 8_3:+52943574 | None:intergenic |
| GATGAATTGGCTAATGAAAT+TGG | 0.328161 | 8_3:+52943158 | None:intergenic |
| TTGTGGGGTTCGTTATAAAT+CGG | 0.359488 | 8_3:-52942940 | Msa1294990:CDS |
| GTTCTTCGTTGGAAAAGTTA+AGG | 0.359947 | 8_3:+52943676 | None:intergenic |
| AGCAAACTGGTTGTTGAGTA+TGG | 0.361535 | 8_3:+52943554 | None:intergenic |
| AGAGAAGTGGATGGTAAGTT+TGG | 0.368433 | 8_3:+52944066 | None:intergenic |
| GGGTGGTGTATTGAGGGGTA+TGG | 0.428208 | 8_3:+52943601 | None:intergenic |
| TTCATGTTCTTGTTCTTCGT+TGG | 0.429278 | 8_3:+52943665 | None:intergenic |
| ACATTATTATGTAACTTACT+AGG | 0.441325 | 8_3:-52942625 | Msa1294990:three_prime_UTR |
| TCGACAAAGAAATCATCAAT+AGG | 0.445020 | 8_3:+52943705 | None:intergenic |
| GCTTGAGGTTGAAGATGAAT+TGG | 0.445209 | 8_3:+52943145 | None:intergenic |
| ACGCCTCTTGCTTCTCCGTC+CGG | 0.456416 | 8_3:+52943047 | None:intergenic |
| AAATCTTCTAACAACGTTTG+TGG | 0.458911 | 8_3:+52943756 | None:intergenic |
| CCTGGTCCGGCTCGCCATTG+AGG | 0.462863 | 8_3:+52942987 | None:intergenic |
| TAAATCGGGTCGGTTGTTAC+CGG | 0.468838 | 8_3:-52942925 | Msa1294990:CDS |
| AGAAGCAAGAGAACTAGAAC+GGG | 0.473153 | 8_3:-52943194 | Msa1294990:CDS |
| TGTGGGGTTCGTTATAAATC+GGG | 0.473414 | 8_3:-52942939 | Msa1294990:CDS |
| TGAACATTCCTCGAGGTTTG+AGG | 0.473610 | 8_3:+52943106 | None:intergenic |
| AAACACTTTGTAATGCTTGT+GGG | 0.474975 | 8_3:-52942956 | Msa1294990:CDS |
| GGTGTTGAAAACGTGGGTTT+TGG | 0.479696 | 8_3:+52943248 | None:intergenic |
| CATCAATAGGAGCTATGTCT+TGG | 0.479888 | 8_3:+52943718 | None:intergenic |
| CTACAAGCCGGTCTATATTC+CGG | 0.483189 | 8_3:+52942906 | None:intergenic |
| CACTACTGAACTCACAGTTC+CGG | 0.486963 | 8_3:-52943523 | Msa1294990:intron |
| AAGAAGCTGCTGATTTAGAA+TGG | 0.493576 | 8_3:-52943349 | Msa1294990:CDS |
| CGGAACTGTGAGTTCAGTAG+TGG | 0.495013 | 8_3:+52943524 | None:intergenic |
| CCTCAATGGCGAGCCGGACC+AGG | 0.495319 | 8_3:-52942987 | Msa1294990:CDS |
| AGAAAGTGTAGTTGAGCTTG+AGG | 0.499899 | 8_3:+52943130 | None:intergenic |
| TATTGAGATGCGGCGGAAGA+AGG | 0.503721 | 8_3:-52942838 | Msa1294990:CDS |
| CTAGAACGGGTATTCGTGTA+TGG | 0.507115 | 8_3:-52943181 | Msa1294990:CDS |
| TGAACAGAAAGTTGAGAGGA+GGG | 0.507927 | 8_3:+52943993 | None:intergenic |
| AGGAGTAGTGAAAGAAGTGA+AGG | 0.509345 | 8_3:+52944031 | None:intergenic |
| CGAGGAATGTTCAAAGCCAC+TGG | 0.512741 | 8_3:-52943096 | Msa1294990:CDS |
| TAGTGGGTAATGAAGCAAAC+TGG | 0.514301 | 8_3:+52943541 | None:intergenic |
| AAAACACTTTGTAATGCTTG+TGG | 0.520445 | 8_3:-52942957 | Msa1294990:CDS |
| ATTATGTAACTTACTAGGAT+AGG | 0.521969 | 8_3:-52942620 | Msa1294990:three_prime_UTR |
| AAGCAAGAGGCGTGCCGCGG+CGG | 0.524432 | 8_3:-52943037 | Msa1294990:CDS |
| AAGACTCCTCAATGGCGAGC+CGG | 0.535933 | 8_3:-52942993 | Msa1294990:CDS |
| TAACAACAAAATAAAACTAA+AGG | 0.537097 | 8_3:+52942564 | None:intergenic |
| TTTACAGGCTGAATTAGCAA+TGG | 0.546101 | 8_3:-52943844 | Msa1294990:intron |
| CAATGGCGAGCCGGACCAGG+TGG | 0.553655 | 8_3:-52942984 | Msa1294990:CDS |
| AGCGAAGAGGATGATTTCAC+CGG | 0.558122 | 8_3:-52943066 | Msa1294990:CDS |
| ATGTTTCAAAACTCCTGTAC+CGG | 0.560011 | 8_3:-52943225 | Msa1294990:CDS |
| GTTTGTTGAGTGAGTGAGGT+AGG | 0.562411 | 8_3:-52942687 | Msa1294990:three_prime_UTR |
| TGGGTGAACAGAAAGTTGAG+AGG | 0.567254 | 8_3:+52943989 | None:intergenic |
| AAGAAGCAAGAGAACTAGAA+CGG | 0.568306 | 8_3:-52943195 | Msa1294990:CDS |
| AACACTTTGTAATGCTTGTG+GGG | 0.570684 | 8_3:-52942955 | Msa1294990:CDS |
| AATTGCATTCAAATCATCAC+CGG | 0.574316 | 8_3:-52942866 | Msa1294990:CDS |
| GGGTGAAATTGAAAGAGAAG+TGG | 0.576394 | 8_3:+52944053 | None:intergenic |
| GGAGTAGTGAAAGAAGTGAA+GGG | 0.576471 | 8_3:+52944032 | None:intergenic |
| TAACGTTTGTTGAGTGAGTG+AGG | 0.579087 | 8_3:-52942691 | Msa1294990:three_prime_UTR |
| GAGAAGCAAGAGGCGTGCCG+CGG | 0.580601 | 8_3:-52943040 | Msa1294990:CDS |
| GAGTAGTGAAAGAAGTGAAG+GGG | 0.583868 | 8_3:+52944033 | None:intergenic |
| GTTGTTACCGGAATATAGAC+CGG | 0.588332 | 8_3:-52942913 | Msa1294990:CDS |
| GTGAACAGAAAGTTGAGAGG+AGG | 0.588585 | 8_3:+52943992 | None:intergenic |
| GAGGGTGTAGTTGAGAAGTG+AGG | 0.594684 | 8_3:+52944011 | None:intergenic |
| GCAATTCACTCGAAAACGTA+GGG | 0.597483 | 8_3:+52942883 | None:intergenic |
| GGGTTCGTTATAAATCGGGT+CGG | 0.607157 | 8_3:-52942935 | Msa1294990:CDS |
| GAGTGAGGTAGGCCTCACTT+AGG | 0.617578 | 8_3:-52942676 | Msa1294990:three_prime_UTR |
| TGAGATGCGGCGGAAGAAGG+AGG | 0.620640 | 8_3:-52942835 | Msa1294990:CDS |
| AACTTACTAGGATAGGATGT+AGG | 0.622493 | 8_3:-52942613 | Msa1294990:three_prime_UTR |
| AAGAGGATGATTTCACCGGA+CGG | 0.639911 | 8_3:-52943062 | Msa1294990:CDS |
| ACCGGAAAGTTATTGAGATG+CGG | 0.641146 | 8_3:-52942848 | Msa1294990:CDS |
| GAAATTGAAAGAGAAGTGGA+TGG | 0.642066 | 8_3:+52944057 | None:intergenic |
| GAAACATGGTGTTGAAAACG+TGG | 0.645272 | 8_3:+52943241 | None:intergenic |
| TCACCGGACGGAGAAGCAAG+AGG | 0.653220 | 8_3:-52943050 | Msa1294990:CDS |
| TGCAATTCACTCGAAAACGT+AGG | 0.661564 | 8_3:+52942882 | None:intergenic |
| GTGTGCAGAAGACTCCTCAA+TGG | 0.671474 | 8_3:-52943001 | Msa1294990:CDS |
| GAAAACGTAGGGCTACAAGC+CGG | 0.674003 | 8_3:+52942894 | None:intergenic |
| CCGCGGCGGTGTAGTCATTG+TGG | 0.682078 | 8_3:-52943023 | Msa1294990:CDS |
| GGAACTGTGAGTTCAGTAGT+GGG | 0.687929 | 8_3:+52943525 | None:intergenic |
| GGAAAGTTATTGAGATGCGG+CGG | 0.689583 | 8_3:-52942845 | Msa1294990:CDS |
| GAAACACTATCACCTAAGTG+AGG | 0.691582 | 8_3:+52942664 | None:intergenic |
| GTGGCTTTGAACATTCCTCG+AGG | 0.693596 | 8_3:+52943099 | None:intergenic |
| ACTTTCTTCCTCAAACCTCG+AGG | 0.695600 | 8_3:-52943114 | Msa1294990:CDS |
| AAACATGGTGTTGAAAACGT+GGG | 0.703723 | 8_3:+52943242 | None:intergenic |
| CCACAATGACTACACCGCCG+CGG | 0.734673 | 8_3:+52943023 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAATTTATTTATTTTTGA+TGG | + | chr8_3:52942753-52942772 | None:intergenic | 10.0% |
| !!! | TCTAATTTATTTATTTTTGA+TGG | + | chr8_3:52942753-52942772 | None:intergenic | 10.0% |
| !!! | TTATCTTCTTTTAATTTTAC+AGG | - | chr8_3:52942777-52942796 | Msa1294990:three_prime_UTR | 15.0% |
| !! | AAATAATAACAATCAAAAAC+CGG | + | chr8_3:52943833-52943852 | None:intergenic | 15.0% |
| !!! | TTAGTTTGAAAAAAAAGATT+AGG | - | chr8_3:52943862-52943881 | Msa1294990:intron | 15.0% |
| !! | TAACAACAAAATAAAACTAA+AGG | + | chr8_3:52944075-52944094 | None:intergenic | 15.0% |
| !!! | TTATCTTCTTTTAATTTTAC+AGG | - | chr8_3:52942777-52942796 | Msa1294990:three_prime_UTR | 15.0% |
| !! | AAATAATAACAATCAAAAAC+CGG | + | chr8_3:52943833-52943852 | None:intergenic | 15.0% |
| !!! | TTAGTTTGAAAAAAAAGATT+AGG | - | chr8_3:52943862-52943881 | Msa1294990:intron | 15.0% |
| !! | TAACAACAAAATAAAACTAA+AGG | + | chr8_3:52944075-52944094 | None:intergenic | 15.0% |
| !!! | TGAAATTTGATTTTGGTTTT+GGG | + | chr8_3:52943058-52943077 | None:intergenic | 20.0% |
| !!! | CTTTCTTTTTTTAATGTAAG+AGG | + | chr8_3:52943152-52943171 | None:intergenic | 20.0% |
| !! | AATAATAACAATCAAAAACC+GGG | + | chr8_3:52943832-52943851 | None:intergenic | 20.0% |
| !!! | AATGAGATTTTTCTTTTTAG+TGG | - | chr8_3:52943904-52943923 | Msa1294990:intron | 20.0% |
| !!! | ATGAGATTTTTCTTTTTAGT+GGG | - | chr8_3:52943905-52943924 | Msa1294990:intron | 20.0% |
| !! | ACATTATTATGTAACTTACT+AGG | - | chr8_3:52944011-52944030 | Msa1294990:CDS | 20.0% |
| !!! | TGAAATTTGATTTTGGTTTT+GGG | + | chr8_3:52943058-52943077 | None:intergenic | 20.0% |
| !!! | CTTTCTTTTTTTAATGTAAG+AGG | + | chr8_3:52943152-52943171 | None:intergenic | 20.0% |
| !! | AATAATAACAATCAAAAACC+GGG | + | chr8_3:52943832-52943851 | None:intergenic | 20.0% |
| !!! | AATGAGATTTTTCTTTTTAG+TGG | - | chr8_3:52943904-52943923 | Msa1294990:intron | 20.0% |
| !!! | ATGAGATTTTTCTTTTTAGT+GGG | - | chr8_3:52943905-52943924 | Msa1294990:intron | 20.0% |
| !! | ACATTATTATGTAACTTACT+AGG | - | chr8_3:52944011-52944030 | Msa1294990:CDS | 20.0% |
| ! | TAAAAGAGAAATTGAAGTTG+AGG | + | chr8_3:52942726-52942745 | None:intergenic | 25.0% |
| !!! | GTGAAATTTGATTTTGGTTT+TGG | + | chr8_3:52943059-52943078 | None:intergenic | 25.0% |
| !! | AACATTCACAATTTTCATGT+GGG | - | chr8_3:52943239-52943258 | Msa1294990:CDS | 25.0% |
| !!! | GTCATTTTAATCCTTTTTGT+AGG | - | chr8_3:52943261-52943280 | Msa1294990:CDS | 25.0% |
| ! | ATTATGTAACTTACTAGGAT+AGG | - | chr8_3:52944016-52944035 | Msa1294990:CDS | 25.0% |
| ! | TAAAAGAGAAATTGAAGTTG+AGG | + | chr8_3:52942726-52942745 | None:intergenic | 25.0% |
| !!! | GTGAAATTTGATTTTGGTTT+TGG | + | chr8_3:52943059-52943078 | None:intergenic | 25.0% |
| !! | AACATTCACAATTTTCATGT+GGG | - | chr8_3:52943239-52943258 | Msa1294990:CDS | 25.0% |
| !!! | GTCATTTTAATCCTTTTTGT+AGG | - | chr8_3:52943261-52943280 | Msa1294990:CDS | 25.0% |
| ! | ATTATGTAACTTACTAGGAT+AGG | - | chr8_3:52944016-52944035 | Msa1294990:CDS | 25.0% |
| AAATCTTCTAACAACGTTTG+TGG | + | chr8_3:52942883-52942902 | None:intergenic | 30.0% | |
| TCGACAAAGAAATCATCAAT+AGG | + | chr8_3:52942934-52942953 | None:intergenic | 30.0% | |
| !!! | AATTTGATTTTGGTTTTGGG+TGG | + | chr8_3:52943055-52943074 | None:intergenic | 30.0% |
| !! | TGGAGTGTGAAATTTGATTT+TGG | + | chr8_3:52943065-52943084 | None:intergenic | 30.0% |
| ! | GAACATTCACAATTTTCATG+TGG | - | chr8_3:52943238-52943257 | Msa1294990:CDS | 30.0% |
| ! | AGTTGGAGATTTTCTGTTTT+GGG | + | chr8_3:52943349-52943368 | None:intergenic | 30.0% |
| ! | AAGTTGGAGATTTTCTGTTT+TGG | + | chr8_3:52943350-52943369 | None:intergenic | 30.0% |
| GATGAATTGGCTAATGAAAT+TGG | + | chr8_3:52943481-52943500 | None:intergenic | 30.0% | |
| !! | CAAGCATTACAAAGTGTTTT+CGG | + | chr8_3:52943679-52943698 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCTTG+TGG | - | chr8_3:52943679-52943698 | Msa1294990:CDS | 30.0% | |
| AAACACTTTGTAATGCTTGT+GGG | - | chr8_3:52943680-52943699 | Msa1294990:CDS | 30.0% | |
| AATTGCATTCAAATCATCAC+CGG | - | chr8_3:52943770-52943789 | Msa1294990:CDS | 30.0% | |
| AAATCTTCTAACAACGTTTG+TGG | + | chr8_3:52942883-52942902 | None:intergenic | 30.0% | |
| TCGACAAAGAAATCATCAAT+AGG | + | chr8_3:52942934-52942953 | None:intergenic | 30.0% | |
| !!! | AATTTGATTTTGGTTTTGGG+TGG | + | chr8_3:52943055-52943074 | None:intergenic | 30.0% |
| !! | TGGAGTGTGAAATTTGATTT+TGG | + | chr8_3:52943065-52943084 | None:intergenic | 30.0% |
| ! | GAACATTCACAATTTTCATG+TGG | - | chr8_3:52943238-52943257 | Msa1294990:CDS | 30.0% |
| ! | AGTTGGAGATTTTCTGTTTT+GGG | + | chr8_3:52943349-52943368 | None:intergenic | 30.0% |
| ! | AAGTTGGAGATTTTCTGTTT+TGG | + | chr8_3:52943350-52943369 | None:intergenic | 30.0% |
| GATGAATTGGCTAATGAAAT+TGG | + | chr8_3:52943481-52943500 | None:intergenic | 30.0% | |
| !! | CAAGCATTACAAAGTGTTTT+CGG | + | chr8_3:52943679-52943698 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCTTG+TGG | - | chr8_3:52943679-52943698 | Msa1294990:CDS | 30.0% | |
| AAACACTTTGTAATGCTTGT+GGG | - | chr8_3:52943680-52943699 | Msa1294990:CDS | 30.0% | |
| AATTGCATTCAAATCATCAC+CGG | - | chr8_3:52943770-52943789 | Msa1294990:CDS | 30.0% | |
| GAAATTGAAAGAGAAGTGGA+TGG | + | chr8_3:52942582-52942601 | None:intergenic | 35.0% | |
| AGAAATTGAAGTTGAGGTGA+AGG | + | chr8_3:52942720-52942739 | None:intergenic | 35.0% | |
| TTTACAGGCTGAATTAGCAA+TGG | - | chr8_3:52942792-52942811 | Msa1294990:three_prime_UTR | 35.0% | |
| GTTCTTCGTTGGAAAAGTTA+AGG | + | chr8_3:52942963-52942982 | None:intergenic | 35.0% | |
| TTCATGTTCTTGTTCTTCGT+TGG | + | chr8_3:52942974-52942993 | None:intergenic | 35.0% | |
| AGCTTCTTCTACCTACAAAA+AGG | + | chr8_3:52943275-52943294 | None:intergenic | 35.0% | |
| !! | AAGAAGCTGCTGATTTAGAA+TGG | - | chr8_3:52943287-52943306 | Msa1294990:CDS | 35.0% |
| !!! | TGTTTTGGGAAATTCTGAGA+AGG | + | chr8_3:52943335-52943354 | None:intergenic | 35.0% |
| ! | CATGAGCTTTTTGTTGAAGT+TGG | + | chr8_3:52943366-52943385 | None:intergenic | 35.0% |
| ! | AAACATGGTGTTGAAAACGT+GGG | + | chr8_3:52943397-52943416 | None:intergenic | 35.0% |
| ATGTTTCAAAACTCCTGTAC+CGG | - | chr8_3:52943411-52943430 | Msa1294990:intron | 35.0% | |
| AAGAAGCAAGAGAACTAGAA+CGG | - | chr8_3:52943441-52943460 | Msa1294990:intron | 35.0% | |
| AACACTTTGTAATGCTTGTG+GGG | - | chr8_3:52943681-52943700 | Msa1294990:CDS | 35.0% | |
| TTGTGGGGTTCGTTATAAAT+CGG | - | chr8_3:52943696-52943715 | Msa1294990:CDS | 35.0% | |
| AACTTACTAGGATAGGATGT+AGG | - | chr8_3:52944023-52944042 | Msa1294990:CDS | 35.0% | |
| GAAATTGAAAGAGAAGTGGA+TGG | + | chr8_3:52942582-52942601 | None:intergenic | 35.0% | |
| AGAAATTGAAGTTGAGGTGA+AGG | + | chr8_3:52942720-52942739 | None:intergenic | 35.0% | |
| TTTACAGGCTGAATTAGCAA+TGG | - | chr8_3:52942792-52942811 | Msa1294990:three_prime_UTR | 35.0% | |
| GTTCTTCGTTGGAAAAGTTA+AGG | + | chr8_3:52942963-52942982 | None:intergenic | 35.0% | |
| TTCATGTTCTTGTTCTTCGT+TGG | + | chr8_3:52942974-52942993 | None:intergenic | 35.0% | |
| AGCTTCTTCTACCTACAAAA+AGG | + | chr8_3:52943275-52943294 | None:intergenic | 35.0% | |
| !! | AAGAAGCTGCTGATTTAGAA+TGG | - | chr8_3:52943287-52943306 | Msa1294990:CDS | 35.0% |
| !!! | TGTTTTGGGAAATTCTGAGA+AGG | + | chr8_3:52943335-52943354 | None:intergenic | 35.0% |
| ! | CATGAGCTTTTTGTTGAAGT+TGG | + | chr8_3:52943366-52943385 | None:intergenic | 35.0% |
| ! | AAACATGGTGTTGAAAACGT+GGG | + | chr8_3:52943397-52943416 | None:intergenic | 35.0% |
| ATGTTTCAAAACTCCTGTAC+CGG | - | chr8_3:52943411-52943430 | Msa1294990:intron | 35.0% | |
| AAGAAGCAAGAGAACTAGAA+CGG | - | chr8_3:52943441-52943460 | Msa1294990:intron | 35.0% | |
| AACACTTTGTAATGCTTGTG+GGG | - | chr8_3:52943681-52943700 | Msa1294990:CDS | 35.0% | |
| TTGTGGGGTTCGTTATAAAT+CGG | - | chr8_3:52943696-52943715 | Msa1294990:CDS | 35.0% | |
| AACTTACTAGGATAGGATGT+AGG | - | chr8_3:52944023-52944042 | Msa1294990:CDS | 35.0% | |
| AGAGAAGTGGATGGTAAGTT+TGG | + | chr8_3:52942573-52942592 | None:intergenic | 40.0% | |
| GGGTGAAATTGAAAGAGAAG+TGG | + | chr8_3:52942586-52942605 | None:intergenic | 40.0% | |
| GAGTAGTGAAAGAAGTGAAG+GGG | + | chr8_3:52942606-52942625 | None:intergenic | 40.0% | |
| GGAGTAGTGAAAGAAGTGAA+GGG | + | chr8_3:52942607-52942626 | None:intergenic | 40.0% | |
| AGGAGTAGTGAAAGAAGTGA+AGG | + | chr8_3:52942608-52942627 | None:intergenic | 40.0% | |
| TGAACAGAAAGTTGAGAGGA+GGG | + | chr8_3:52942646-52942665 | None:intergenic | 40.0% | |
| ATTGAAGTTGAGGTGAAGGT+AGG | + | chr8_3:52942716-52942735 | None:intergenic | 40.0% | |
| CATCAATAGGAGCTATGTCT+TGG | + | chr8_3:52942921-52942940 | None:intergenic | 40.0% | |
| AGCAAACTGGTTGTTGAGTA+TGG | + | chr8_3:52943085-52943104 | None:intergenic | 40.0% | |
| ! | TAGTGGGTAATGAAGCAAAC+TGG | + | chr8_3:52943098-52943117 | None:intergenic | 40.0% |
| ! | GAAACATGGTGTTGAAAACG+TGG | + | chr8_3:52943398-52943417 | None:intergenic | 40.0% |
| !!! | GGTACAGGAGTTTTGAAACA+TGG | + | chr8_3:52943412-52943431 | None:intergenic | 40.0% |
| AGAAGCAAGAGAACTAGAAC+GGG | - | chr8_3:52943442-52943461 | Msa1294990:intron | 40.0% | |
| GCTTGAGGTTGAAGATGAAT+TGG | + | chr8_3:52943494-52943513 | None:intergenic | 40.0% | |
| ! | AGAAAGTGTAGTTGAGCTTG+AGG | + | chr8_3:52943509-52943528 | None:intergenic | 40.0% |
| TGTGGGGTTCGTTATAAATC+GGG | - | chr8_3:52943697-52943716 | Msa1294990:CDS | 40.0% | |
| GTTGTTACCGGAATATAGAC+CGG | - | chr8_3:52943723-52943742 | Msa1294990:CDS | 40.0% | |
| GCAATTCACTCGAAAACGTA+GGG | + | chr8_3:52943756-52943775 | None:intergenic | 40.0% | |
| TGCAATTCACTCGAAAACGT+AGG | + | chr8_3:52943757-52943776 | None:intergenic | 40.0% | |
| ACCGGAAAGTTATTGAGATG+CGG | - | chr8_3:52943788-52943807 | Msa1294990:CDS | 40.0% | |
| ! | TAACGTTTGTTGAGTGAGTG+AGG | - | chr8_3:52943945-52943964 | Msa1294990:intron | 40.0% |
| GAAACACTATCACCTAAGTG+AGG | + | chr8_3:52943975-52943994 | None:intergenic | 40.0% | |
| AGAGAAGTGGATGGTAAGTT+TGG | + | chr8_3:52942573-52942592 | None:intergenic | 40.0% | |
| GGGTGAAATTGAAAGAGAAG+TGG | + | chr8_3:52942586-52942605 | None:intergenic | 40.0% | |
| GAGTAGTGAAAGAAGTGAAG+GGG | + | chr8_3:52942606-52942625 | None:intergenic | 40.0% | |
| GGAGTAGTGAAAGAAGTGAA+GGG | + | chr8_3:52942607-52942626 | None:intergenic | 40.0% | |
| AGGAGTAGTGAAAGAAGTGA+AGG | + | chr8_3:52942608-52942627 | None:intergenic | 40.0% | |
| TGAACAGAAAGTTGAGAGGA+GGG | + | chr8_3:52942646-52942665 | None:intergenic | 40.0% | |
| ATTGAAGTTGAGGTGAAGGT+AGG | + | chr8_3:52942716-52942735 | None:intergenic | 40.0% | |
| CATCAATAGGAGCTATGTCT+TGG | + | chr8_3:52942921-52942940 | None:intergenic | 40.0% | |
| AGCAAACTGGTTGTTGAGTA+TGG | + | chr8_3:52943085-52943104 | None:intergenic | 40.0% | |
| ! | TAGTGGGTAATGAAGCAAAC+TGG | + | chr8_3:52943098-52943117 | None:intergenic | 40.0% |
| ! | GAAACATGGTGTTGAAAACG+TGG | + | chr8_3:52943398-52943417 | None:intergenic | 40.0% |
| !!! | GGTACAGGAGTTTTGAAACA+TGG | + | chr8_3:52943412-52943431 | None:intergenic | 40.0% |
| AGAAGCAAGAGAACTAGAAC+GGG | - | chr8_3:52943442-52943461 | Msa1294990:intron | 40.0% | |
| GCTTGAGGTTGAAGATGAAT+TGG | + | chr8_3:52943494-52943513 | None:intergenic | 40.0% | |
| ! | AGAAAGTGTAGTTGAGCTTG+AGG | + | chr8_3:52943509-52943528 | None:intergenic | 40.0% |
| TGTGGGGTTCGTTATAAATC+GGG | - | chr8_3:52943697-52943716 | Msa1294990:CDS | 40.0% | |
| GTTGTTACCGGAATATAGAC+CGG | - | chr8_3:52943723-52943742 | Msa1294990:CDS | 40.0% | |
| GCAATTCACTCGAAAACGTA+GGG | + | chr8_3:52943756-52943775 | None:intergenic | 40.0% | |
| TGCAATTCACTCGAAAACGT+AGG | + | chr8_3:52943757-52943776 | None:intergenic | 40.0% | |
| ACCGGAAAGTTATTGAGATG+CGG | - | chr8_3:52943788-52943807 | Msa1294990:CDS | 40.0% | |
| ! | TAACGTTTGTTGAGTGAGTG+AGG | - | chr8_3:52943945-52943964 | Msa1294990:intron | 40.0% |
| GAAACACTATCACCTAAGTG+AGG | + | chr8_3:52943975-52943994 | None:intergenic | 40.0% | |
| GTGAACAGAAAGTTGAGAGG+AGG | + | chr8_3:52942647-52942666 | None:intergenic | 45.0% | |
| TGGGTGAACAGAAAGTTGAG+AGG | + | chr8_3:52942650-52942669 | None:intergenic | 45.0% | |
| !! | GTTTTGGGTGGTGTATTGAG+GGG | + | chr8_3:52943043-52943062 | None:intergenic | 45.0% |
| !!! | GGTTTTGGGTGGTGTATTGA+GGG | + | chr8_3:52943044-52943063 | None:intergenic | 45.0% |
| !!! | TGGTTTTGGGTGGTGTATTG+AGG | + | chr8_3:52943045-52943064 | None:intergenic | 45.0% |
| GGAACTGTGAGTTCAGTAGT+GGG | + | chr8_3:52943114-52943133 | None:intergenic | 45.0% | |
| CACTACTGAACTCACAGTTC+CGG | - | chr8_3:52943113-52943132 | Msa1294990:CDS | 45.0% | |
| ! | AAGAGGAAGAGAGAGAGTAC+CGG | + | chr8_3:52943135-52943154 | None:intergenic | 45.0% |
| !! | GGTGTTGAAAACGTGGGTTT+TGG | + | chr8_3:52943391-52943410 | None:intergenic | 45.0% |
| !! | CTCTTGCTTCTTGCTTTTGC+CGG | + | chr8_3:52943433-52943452 | None:intergenic | 45.0% |
| CTAGAACGGGTATTCGTGTA+TGG | - | chr8_3:52943455-52943474 | Msa1294990:intron | 45.0% | |
| ACTTTCTTCCTCAAACCTCG+AGG | - | chr8_3:52943522-52943541 | Msa1294990:intron | 45.0% | |
| TGAACATTCCTCGAGGTTTG+AGG | + | chr8_3:52943533-52943552 | None:intergenic | 45.0% | |
| !!! | CTCTTCGCTTTTTTCTCCAG+TGG | + | chr8_3:52943559-52943578 | None:intergenic | 45.0% |
| CACTGGAGAAAAAAGCGAAG+AGG | - | chr8_3:52943557-52943576 | Msa1294990:CDS | 45.0% | |
| AGCGAAGAGGATGATTTCAC+CGG | - | chr8_3:52943570-52943589 | Msa1294990:CDS | 45.0% | |
| AAGAGGATGATTTCACCGGA+CGG | - | chr8_3:52943574-52943593 | Msa1294990:CDS | 45.0% | |
| GGGTTCGTTATAAATCGGGT+CGG | - | chr8_3:52943701-52943720 | Msa1294990:CDS | 45.0% | |
| TAAATCGGGTCGGTTGTTAC+CGG | - | chr8_3:52943711-52943730 | Msa1294990:CDS | 45.0% | |
| CTACAAGCCGGTCTATATTC+CGG | + | chr8_3:52943733-52943752 | None:intergenic | 45.0% | |
| GCCGCATCTCAATAACTTTC+CGG | + | chr8_3:52943792-52943811 | None:intergenic | 45.0% | |
| GGAAAGTTATTGAGATGCGG+CGG | - | chr8_3:52943791-52943810 | Msa1294990:CDS | 45.0% | |
| ! | GTTTGTTGAGTGAGTGAGGT+AGG | - | chr8_3:52943949-52943968 | Msa1294990:intron | 45.0% |
| GTGAACAGAAAGTTGAGAGG+AGG | + | chr8_3:52942647-52942666 | None:intergenic | 45.0% | |
| TGGGTGAACAGAAAGTTGAG+AGG | + | chr8_3:52942650-52942669 | None:intergenic | 45.0% | |
| !! | GTTTTGGGTGGTGTATTGAG+GGG | + | chr8_3:52943043-52943062 | None:intergenic | 45.0% |
| !!! | GGTTTTGGGTGGTGTATTGA+GGG | + | chr8_3:52943044-52943063 | None:intergenic | 45.0% |
| !!! | TGGTTTTGGGTGGTGTATTG+AGG | + | chr8_3:52943045-52943064 | None:intergenic | 45.0% |
| GGAACTGTGAGTTCAGTAGT+GGG | + | chr8_3:52943114-52943133 | None:intergenic | 45.0% | |
| CACTACTGAACTCACAGTTC+CGG | - | chr8_3:52943113-52943132 | Msa1294990:CDS | 45.0% | |
| ! | AAGAGGAAGAGAGAGAGTAC+CGG | + | chr8_3:52943135-52943154 | None:intergenic | 45.0% |
| !! | GGTGTTGAAAACGTGGGTTT+TGG | + | chr8_3:52943391-52943410 | None:intergenic | 45.0% |
| !! | CTCTTGCTTCTTGCTTTTGC+CGG | + | chr8_3:52943433-52943452 | None:intergenic | 45.0% |
| CTAGAACGGGTATTCGTGTA+TGG | - | chr8_3:52943455-52943474 | Msa1294990:intron | 45.0% | |
| ACTTTCTTCCTCAAACCTCG+AGG | - | chr8_3:52943522-52943541 | Msa1294990:intron | 45.0% | |
| TGAACATTCCTCGAGGTTTG+AGG | + | chr8_3:52943533-52943552 | None:intergenic | 45.0% | |
| !!! | CTCTTCGCTTTTTTCTCCAG+TGG | + | chr8_3:52943559-52943578 | None:intergenic | 45.0% |
| CACTGGAGAAAAAAGCGAAG+AGG | - | chr8_3:52943557-52943576 | Msa1294990:CDS | 45.0% | |
| AGCGAAGAGGATGATTTCAC+CGG | - | chr8_3:52943570-52943589 | Msa1294990:CDS | 45.0% | |
| AAGAGGATGATTTCACCGGA+CGG | - | chr8_3:52943574-52943593 | Msa1294990:CDS | 45.0% | |
| GGGTTCGTTATAAATCGGGT+CGG | - | chr8_3:52943701-52943720 | Msa1294990:CDS | 45.0% | |
| TAAATCGGGTCGGTTGTTAC+CGG | - | chr8_3:52943711-52943730 | Msa1294990:CDS | 45.0% | |
| CTACAAGCCGGTCTATATTC+CGG | + | chr8_3:52943733-52943752 | None:intergenic | 45.0% | |
| GCCGCATCTCAATAACTTTC+CGG | + | chr8_3:52943792-52943811 | None:intergenic | 45.0% | |
| GGAAAGTTATTGAGATGCGG+CGG | - | chr8_3:52943791-52943810 | Msa1294990:CDS | 45.0% | |
| ! | GTTTGTTGAGTGAGTGAGGT+AGG | - | chr8_3:52943949-52943968 | Msa1294990:intron | 45.0% |
| !!! | TTTTTTTTTGTTTTTTTTTA+AGG | - | chr8_3:52943199-52943218 | Msa1294990:CDS | 5.0% |
| !!! | TTTTTTTTTGTTTTTTTTTA+AGG | - | chr8_3:52943199-52943218 | Msa1294990:CDS | 5.0% |
| ! | GAGGGTGTAGTTGAGAAGTG+AGG | + | chr8_3:52942628-52942647 | None:intergenic | 50.0% |
| GAGAGAGAGAGAGGATGAGT+GGG | + | chr8_3:52942669-52942688 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGGATGAG+TGG | + | chr8_3:52942670-52942689 | None:intergenic | 50.0% | |
| TGAGAGAGAGAGAGAGAGAG+AGG | + | chr8_3:52942678-52942697 | None:intergenic | 50.0% | |
| TCTCTCTCTCTCTCTCTCTC+AGG | - | chr8_3:52942677-52942696 | Msa1294990:three_prime_UTR | 50.0% | |
| CGGAACTGTGAGTTCAGTAG+TGG | + | chr8_3:52943115-52943134 | None:intergenic | 50.0% | |
| !! | CTTCTTGCTTTTGCCGGTAC+AGG | + | chr8_3:52943427-52943446 | None:intergenic | 50.0% |
| !! | GTGGCTTTGAACATTCCTCG+AGG | + | chr8_3:52943540-52943559 | None:intergenic | 50.0% |
| CGAGGAATGTTCAAAGCCAC+TGG | - | chr8_3:52943540-52943559 | Msa1294990:CDS | 50.0% | |
| GTGTGCAGAAGACTCCTCAA+TGG | - | chr8_3:52943635-52943654 | Msa1294990:CDS | 50.0% | |
| GAAAACGTAGGGCTACAAGC+CGG | + | chr8_3:52943745-52943764 | None:intergenic | 50.0% | |
| TATTGAGATGCGGCGGAAGA+AGG | - | chr8_3:52943798-52943817 | Msa1294990:CDS | 50.0% | |
| ! | GAGGGTGTAGTTGAGAAGTG+AGG | + | chr8_3:52942628-52942647 | None:intergenic | 50.0% |
| GAGAGAGAGAGAGGATGAGT+GGG | + | chr8_3:52942669-52942688 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGGATGAG+TGG | + | chr8_3:52942670-52942689 | None:intergenic | 50.0% | |
| TGAGAGAGAGAGAGAGAGAG+AGG | + | chr8_3:52942678-52942697 | None:intergenic | 50.0% | |
| TCTCTCTCTCTCTCTCTCTC+AGG | - | chr8_3:52942677-52942696 | Msa1294990:three_prime_UTR | 50.0% | |
| CGGAACTGTGAGTTCAGTAG+TGG | + | chr8_3:52943115-52943134 | None:intergenic | 50.0% | |
| !! | CTTCTTGCTTTTGCCGGTAC+AGG | + | chr8_3:52943427-52943446 | None:intergenic | 50.0% |
| !! | GTGGCTTTGAACATTCCTCG+AGG | + | chr8_3:52943540-52943559 | None:intergenic | 50.0% |
| CGAGGAATGTTCAAAGCCAC+TGG | - | chr8_3:52943540-52943559 | Msa1294990:CDS | 50.0% | |
| GTGTGCAGAAGACTCCTCAA+TGG | - | chr8_3:52943635-52943654 | Msa1294990:CDS | 50.0% | |
| GAAAACGTAGGGCTACAAGC+CGG | + | chr8_3:52943745-52943764 | None:intergenic | 50.0% | |
| TATTGAGATGCGGCGGAAGA+AGG | - | chr8_3:52943798-52943817 | Msa1294990:CDS | 50.0% | |
| GGGTGGTGTATTGAGGGGTA+TGG | + | chr8_3:52943038-52943057 | None:intergenic | 55.0% | |
| AAGACTCCTCAATGGCGAGC+CGG | - | chr8_3:52943643-52943662 | Msa1294990:CDS | 55.0% | |
| !! | CAAAGTGTTTTCGGCCCACC+TGG | + | chr8_3:52943670-52943689 | None:intergenic | 55.0% |
| CGGAAGAAGGAGGTTGTTCC+CGG | - | chr8_3:52943811-52943830 | Msa1294990:CDS | 55.0% | |
| GAGTGAGGTAGGCCTCACTT+AGG | - | chr8_3:52943960-52943979 | Msa1294990:CDS | 55.0% | |
| GGGTGGTGTATTGAGGGGTA+TGG | + | chr8_3:52943038-52943057 | None:intergenic | 55.0% | |
| AAGACTCCTCAATGGCGAGC+CGG | - | chr8_3:52943643-52943662 | Msa1294990:CDS | 55.0% | |
| !! | CAAAGTGTTTTCGGCCCACC+TGG | + | chr8_3:52943670-52943689 | None:intergenic | 55.0% |
| CGGAAGAAGGAGGTTGTTCC+CGG | - | chr8_3:52943811-52943830 | Msa1294990:CDS | 55.0% | |
| GAGTGAGGTAGGCCTCACTT+AGG | - | chr8_3:52943960-52943979 | Msa1294990:CDS | 55.0% | |
| TCACCGGACGGAGAAGCAAG+AGG | - | chr8_3:52943586-52943605 | Msa1294990:CDS | 60.0% | |
| ACGCCTCTTGCTTCTCCGTC+CGG | + | chr8_3:52943592-52943611 | None:intergenic | 60.0% | |
| CCACAATGACTACACCGCCG+CGG | + | chr8_3:52943616-52943635 | None:intergenic | 60.0% | |
| ! | TGTTTTCGGCCCACCTGGTC+CGG | + | chr8_3:52943665-52943684 | None:intergenic | 60.0% |
| TGAGATGCGGCGGAAGAAGG+AGG | - | chr8_3:52943801-52943820 | Msa1294990:CDS | 60.0% | |
| TCACCGGACGGAGAAGCAAG+AGG | - | chr8_3:52943586-52943605 | Msa1294990:CDS | 60.0% | |
| ACGCCTCTTGCTTCTCCGTC+CGG | + | chr8_3:52943592-52943611 | None:intergenic | 60.0% | |
| CCACAATGACTACACCGCCG+CGG | + | chr8_3:52943616-52943635 | None:intergenic | 60.0% | |
| ! | TGTTTTCGGCCCACCTGGTC+CGG | + | chr8_3:52943665-52943684 | None:intergenic | 60.0% |
| TGAGATGCGGCGGAAGAAGG+AGG | - | chr8_3:52943801-52943820 | Msa1294990:CDS | 60.0% | |
| ! | GAGAAGCAAGAGGCGTGCCG+CGG | - | chr8_3:52943596-52943615 | Msa1294990:CDS | 65.0% |
| CCGCGGCGGTGTAGTCATTG+TGG | - | chr8_3:52943613-52943632 | Msa1294990:CDS | 65.0% | |
| AATGGCGAGCCGGACCAGGT+GGG | - | chr8_3:52943653-52943672 | Msa1294990:CDS | 65.0% | |
| ! | GAGAAGCAAGAGGCGTGCCG+CGG | - | chr8_3:52943596-52943615 | Msa1294990:CDS | 65.0% |
| CCGCGGCGGTGTAGTCATTG+TGG | - | chr8_3:52943613-52943632 | Msa1294990:CDS | 65.0% | |
| AATGGCGAGCCGGACCAGGT+GGG | - | chr8_3:52943653-52943672 | Msa1294990:CDS | 65.0% | |
| ! | AAGCAAGAGGCGTGCCGCGG+CGG | - | chr8_3:52943599-52943618 | Msa1294990:CDS | 70.0% |
| ! | CCTGGTCCGGCTCGCCATTG+AGG | + | chr8_3:52943652-52943671 | None:intergenic | 70.0% |
| CCTCAATGGCGAGCCGGACC+AGG | - | chr8_3:52943649-52943668 | Msa1294990:CDS | 70.0% | |
| CAATGGCGAGCCGGACCAGG+TGG | - | chr8_3:52943652-52943671 | Msa1294990:CDS | 70.0% | |
| ! | AAGCAAGAGGCGTGCCGCGG+CGG | - | chr8_3:52943599-52943618 | Msa1294990:CDS | 70.0% |
| ! | CCTGGTCCGGCTCGCCATTG+AGG | + | chr8_3:52943652-52943671 | None:intergenic | 70.0% |
| CCTCAATGGCGAGCCGGACC+AGG | - | chr8_3:52943649-52943668 | Msa1294990:CDS | 70.0% | |
| CAATGGCGAGCCGGACCAGG+TGG | - | chr8_3:52943652-52943671 | Msa1294990:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 52942564 | 52944094 | 52942564 | ID=Msa1294990;Name=Msa1294990 |
| chr8_3 | mRNA | 52942564 | 52944094 | 52942564 | ID=Msa1294990-mRNA-1;Parent=Msa1294990;Name=Msa1294990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|0.5|0.66|3|254|342 |
| chr8_3 | exon | 52942564 | 52943375 | 52942564 | ID=Msa1294990-mRNA-1:exon:15082;Parent=Msa1294990-mRNA-1 |
| chr8_3 | exon | 52943524 | 52943859 | 52943524 | ID=Msa1294990-mRNA-1:exon:15081;Parent=Msa1294990-mRNA-1 |
| chr8_3 | exon | 52943960 | 52944094 | 52943960 | ID=Msa1294990-mRNA-1:exon:15080;Parent=Msa1294990-mRNA-1 |
| chr8_3 | CDS | 52943960 | 52944094 | 52943960 | ID=Msa1294990-mRNA-1:cds;Parent=Msa1294990-mRNA-1 |
| chr8_3 | CDS | 52943524 | 52943859 | 52943524 | ID=Msa1294990-mRNA-1:cds;Parent=Msa1294990-mRNA-1 |
| chr8_3 | CDS | 52942818 | 52943375 | 52942818 | ID=Msa1294990-mRNA-1:cds;Parent=Msa1294990-mRNA-1 |
| chr8_3 | three_prime_UTR | 52942564 | 52942817 | 52942564 | ID=Msa1294990-mRNA-1:three_prime_utr;Parent=Msa1294990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
