Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295720 | sp|Q6Z2G9|TLP5_ORYSJ | 54.688 | 64 | 25 | 1 | 44 | 103 | 169 | 232 | 3.56e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295720 | Q9M3H9 | 51.852 | 162 | 43 | 5 | 44 | 170 | 153 | 314 | 1.35e-32 | 130 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1295720 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295720 | MtrunA17_Chr8g0373001 | 46.429 | 168 | 54 | 4 | 44 | 175 | 153 | 320 | 3.80e-32 | 119 |
| Msa1295720 | MtrunA17_Chr8g0373361 | 47.799 | 159 | 50 | 3 | 44 | 169 | 158 | 316 | 2.16e-30 | 114 |
| Msa1295720 | MtrunA17_Chr5g0404321 | 33.068 | 251 | 71 | 8 | 17 | 170 | 69 | 319 | 6.69e-22 | 91.3 |
| Msa1295720 | MtrunA17_Chr1g0156151 | 45.714 | 70 | 34 | 1 | 37 | 102 | 148 | 217 | 3.36e-14 | 67.8 |
| Msa1295720 | MtrunA17_Chr1g0155301 | 49.206 | 63 | 28 | 1 | 44 | 102 | 171 | 233 | 8.46e-13 | 65.5 |
| Msa1295720 | MtrunA17_Chr2g0315641 | 46.250 | 80 | 28 | 3 | 36 | 101 | 124 | 202 | 6.16e-12 | 62.8 |
| Msa1295720 | MtrunA17_Chr2g0286441 | 50.877 | 57 | 24 | 1 | 44 | 96 | 139 | 195 | 7.51e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295720 | AT2G18280.2 | 34.211 | 152 | 36 | 4 | 15 | 102 | 60 | 211 | 1.25e-13 | 68.2 |
| Msa1295720 | AT2G18280.1 | 34.211 | 152 | 36 | 4 | 15 | 102 | 60 | 211 | 1.25e-13 | 68.2 |
| Msa1295720 | AT1G53320.1 | 54.098 | 61 | 24 | 1 | 44 | 100 | 144 | 204 | 5.64e-13 | 66.2 |
| Msa1295720 | AT1G47270.1 | 52.830 | 53 | 21 | 1 | 44 | 92 | 170 | 222 | 3.62e-12 | 63.9 |
| Msa1295720 | AT1G47270.2 | 52.830 | 53 | 21 | 1 | 44 | 92 | 169 | 221 | 3.72e-12 | 63.9 |
| Msa1295720 | AT1G47270.3 | 52.830 | 53 | 21 | 1 | 44 | 92 | 145 | 197 | 3.80e-12 | 63.9 |
Find 41 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACTTTACCAACATATT+TGG | 0.185070 | 8_3:+53932246 | None:intergenic |
| TCTACCACCTGAATTACTTT+TGG | 0.258106 | 8_3:-53932577 | Msa1295720:CDS |
| CATATGGCAGGTCTAAATTT+CGG | 0.277642 | 8_3:-53932132 | Msa1295720:intron |
| AAATTCGGACCTTATCCTTT+TGG | 0.319813 | 8_3:+53932309 | None:intergenic |
| ATATGGCAGGTCTAAATTTC+GGG | 0.330104 | 8_3:-53932131 | Msa1295720:intron |
| CTACATGCTCGAACTCTTCT+TGG | 0.336761 | 8_3:+53932011 | None:intergenic |
| AAAGGTTCATCAGATATATT+AGG | 0.341471 | 8_3:+53931863 | None:intergenic |
| TATCCTCTTGGTCGACAGTT+TGG | 0.344587 | 8_3:+53932055 | None:intergenic |
| CTTAGTCCTGGTAGCTCTGA+TGG | 0.381410 | 8_3:+53931782 | None:intergenic |
| TCCTCCTTCACCGGCACTAA+AGG | 0.381547 | 8_3:-53931840 | Msa1295720:CDS |
| CCTCCTTCACCGGCACTAAA+GGG | 0.402947 | 8_3:-53931839 | Msa1295720:CDS |
| GCAGAGTATGAATTTGTCAT+TGG | 0.410911 | 8_3:+53931809 | None:intergenic |
| TATTAACCGCCAAAAGGATA+AGG | 0.411126 | 8_3:-53932318 | Msa1295720:CDS |
| AAACTGTCCAAAAGTAATTC+AGG | 0.425613 | 8_3:+53932570 | None:intergenic |
| ACCTATTCAACATGGACGTT+GGG | 0.442535 | 8_3:-53932604 | None:intergenic |
| TTTACCAACATATTTGGTGC+TGG | 0.468027 | 8_3:+53932252 | None:intergenic |
| CTTTATTATTAACCGCCAAA+AGG | 0.477816 | 8_3:-53932324 | Msa1295720:CDS |
| TTGAAGAGACTGAGACATCT+TGG | 0.481046 | 8_3:-53932541 | Msa1295720:CDS |
| CAAGGCTTGGCCACGAGTGT+TGG | 0.490897 | 8_3:-53931758 | Msa1295720:CDS |
| CTTAGAATTAAATATCCTCT+TGG | 0.493977 | 8_3:+53932043 | None:intergenic |
| GAGGATATTTAATTCTAAGC+AGG | 0.500434 | 8_3:-53932039 | Msa1295720:CDS |
| ATTAGGTAACAATGTTAGAC+CGG | 0.501412 | 8_3:+53931880 | None:intergenic |
| CCCTTTAGTGCCGGTGAAGG+AGG | 0.507214 | 8_3:+53931839 | None:intergenic |
| AACCTATTCAACATGGACGT+TGG | 0.515792 | 8_3:-53932605 | None:intergenic |
| TTAGTCCTGGTAGCTCTGAT+GGG | 0.523245 | 8_3:+53931783 | None:intergenic |
| GCCAAGCCTTGACTTAGTCC+TGG | 0.534521 | 8_3:+53931770 | None:intergenic |
| GCAATCCCATCAGAGCTACC+AGG | 0.536157 | 8_3:-53931788 | Msa1295720:CDS |
| AGTGCCGGTGAAGGAGGAAA+AGG | 0.536517 | 8_3:+53931845 | None:intergenic |
| TTTCCCTTTAGTGCCGGTGA+AGG | 0.548150 | 8_3:+53931836 | None:intergenic |
| ACCAGGACTAAGTCAAGGCT+TGG | 0.553956 | 8_3:-53931771 | Msa1295720:CDS |
| CAAGCCAGCACCAAATATGT+TGG | 0.578116 | 8_3:-53932256 | Msa1295720:CDS |
| CCAAATATGTTGGTAAAGTG+AGG | 0.591891 | 8_3:-53932246 | Msa1295720:intron |
| GGTTGAACTGCAGCATCACG+TGG | 0.623599 | 8_3:+53932076 | None:intergenic |
| TTAGGTAACAATGTTAGACC+GGG | 0.633952 | 8_3:+53931881 | None:intergenic |
| GAGCTACCAGGACTAAGTCA+AGG | 0.635110 | 8_3:-53931776 | Msa1295720:CDS |
| CAACCAAACTGTCGACCAAG+AGG | 0.636940 | 8_3:-53932058 | Msa1295720:CDS |
| CTGTCCAAAAGTAATTCAGG+TGG | 0.655899 | 8_3:+53932573 | None:intergenic |
| TATGGCAGGTCTAAATTTCG+GGG | 0.664862 | 8_3:-53932130 | Msa1295720:intron |
| AGTTTAGCTTCCAACACTCG+TGG | 0.666800 | 8_3:+53931748 | None:intergenic |
| GTTACCACTATTCAGGAAGG+GGG | 0.693500 | 8_3:-53931909 | Msa1295720:intron |
| TGAACTGCAGCATCACGTGG+AGG | 0.751235 | 8_3:+53932079 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAACTTGATTTTTATACATA+TGG | - | chr8_3:53932196-53932215 | Msa1295720:intron | 20.0% |
| !!! | CAACTTGATTTTTATACATA+TGG | - | chr8_3:53932196-53932215 | Msa1295720:intron | 20.0% |
| !! | TCAAGTTGTGAAGATTATAA+GGG | + | chr8_3:53932184-53932203 | None:intergenic | 25.0% |
| !! | ATCAAGTTGTGAAGATTATA+AGG | + | chr8_3:53932185-53932204 | None:intergenic | 25.0% |
| !! | TTGATTTTTATACATATGGC+AGG | - | chr8_3:53932200-53932219 | Msa1295720:intron | 25.0% |
| ! | CTTAGAATTAAATATCCTCT+TGG | + | chr8_3:53932304-53932323 | None:intergenic | 25.0% |
| ! | AAAGGTTCATCAGATATATT+AGG | + | chr8_3:53932484-53932503 | None:intergenic | 25.0% |
| !! | TCAAGTTGTGAAGATTATAA+GGG | + | chr8_3:53932184-53932203 | None:intergenic | 25.0% |
| !! | ATCAAGTTGTGAAGATTATA+AGG | + | chr8_3:53932185-53932204 | None:intergenic | 25.0% |
| !! | TTGATTTTTATACATATGGC+AGG | - | chr8_3:53932200-53932219 | Msa1295720:intron | 25.0% |
| ! | CTTAGAATTAAATATCCTCT+TGG | + | chr8_3:53932304-53932323 | None:intergenic | 25.0% |
| ! | AAAGGTTCATCAGATATATT+AGG | + | chr8_3:53932484-53932503 | None:intergenic | 25.0% |
| AAACTGTCCAAAAGTAATTC+AGG | + | chr8_3:53931777-53931796 | None:intergenic | 30.0% | |
| !! | ATTACTTTTGGACAGTTTGT+AGG | - | chr8_3:53931779-53931798 | Msa1295720:CDS | 30.0% |
| !! | TTACTTTTGGACAGTTTGTA+GGG | - | chr8_3:53931780-53931799 | Msa1295720:CDS | 30.0% |
| TTCAGTATGTAAATCATGGA+GGG | - | chr8_3:53931855-53931874 | Msa1295720:CDS | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | - | chr8_3:53931923-53931942 | Msa1295720:intron | 30.0% | |
| AGAGAACATAAAAAACCTGA+GGG | + | chr8_3:53931997-53932016 | None:intergenic | 30.0% | |
| AAGAGAACATAAAAAACCTG+AGG | + | chr8_3:53931998-53932017 | None:intergenic | 30.0% | |
| ! | CTTTTGGCGGTTAATAATAA+AGG | + | chr8_3:53932022-53932041 | None:intergenic | 30.0% |
| CTTTATTATTAACCGCCAAA+AGG | - | chr8_3:53932020-53932039 | Msa1295720:CDS | 30.0% | |
| CAAGTTGTGAAGATTATAAG+GGG | + | chr8_3:53932183-53932202 | None:intergenic | 30.0% | |
| GAGGATATTTAATTCTAAGC+AGG | - | chr8_3:53932305-53932324 | Msa1295720:CDS | 30.0% | |
| AAGAAATGGTACAAACAAGA+TGG | + | chr8_3:53932359-53932378 | None:intergenic | 30.0% | |
| TGTTTGTACCATTTCTTATG+AGG | - | chr8_3:53932362-53932381 | Msa1295720:intron | 30.0% | |
| ATTAGGTAACAATGTTAGAC+CGG | + | chr8_3:53932467-53932486 | None:intergenic | 30.0% | |
| AAACTGTCCAAAAGTAATTC+AGG | + | chr8_3:53931777-53931796 | None:intergenic | 30.0% | |
| !! | ATTACTTTTGGACAGTTTGT+AGG | - | chr8_3:53931779-53931798 | Msa1295720:CDS | 30.0% |
| !! | TTACTTTTGGACAGTTTGTA+GGG | - | chr8_3:53931780-53931799 | Msa1295720:CDS | 30.0% |
| TTCAGTATGTAAATCATGGA+GGG | - | chr8_3:53931855-53931874 | Msa1295720:CDS | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | - | chr8_3:53931923-53931942 | Msa1295720:intron | 30.0% | |
| AGAGAACATAAAAAACCTGA+GGG | + | chr8_3:53931997-53932016 | None:intergenic | 30.0% | |
| AAGAGAACATAAAAAACCTG+AGG | + | chr8_3:53931998-53932017 | None:intergenic | 30.0% | |
| ! | CTTTTGGCGGTTAATAATAA+AGG | + | chr8_3:53932022-53932041 | None:intergenic | 30.0% |
| CTTTATTATTAACCGCCAAA+AGG | - | chr8_3:53932020-53932039 | Msa1295720:CDS | 30.0% | |
| CAAGTTGTGAAGATTATAAG+GGG | + | chr8_3:53932183-53932202 | None:intergenic | 30.0% | |
| GAGGATATTTAATTCTAAGC+AGG | - | chr8_3:53932305-53932324 | Msa1295720:CDS | 30.0% | |
| AAGAAATGGTACAAACAAGA+TGG | + | chr8_3:53932359-53932378 | None:intergenic | 30.0% | |
| TGTTTGTACCATTTCTTATG+AGG | - | chr8_3:53932362-53932381 | Msa1295720:intron | 30.0% | |
| ATTAGGTAACAATGTTAGAC+CGG | + | chr8_3:53932467-53932486 | None:intergenic | 30.0% | |
| ! | TCTACCACCTGAATTACTTT+TGG | - | chr8_3:53931767-53931786 | Msa1295720:CDS | 35.0% |
| GTGCTTCAGTATGTAAATCA+TGG | - | chr8_3:53931851-53931870 | Msa1295720:CDS | 35.0% | |
| CTTCAGTATGTAAATCATGG+AGG | - | chr8_3:53931854-53931873 | Msa1295720:CDS | 35.0% | |
| ACTACCTGCTTCAATGAAAT+AGG | + | chr8_3:53931930-53931949 | None:intergenic | 35.0% | |
| CAATTATTTCACCCACTTTC+TGG | - | chr8_3:53931950-53931969 | Msa1295720:intron | 35.0% | |
| ! | TTTGGATTAGACCAGAAAGT+GGG | + | chr8_3:53931964-53931983 | None:intergenic | 35.0% |
| ! | ATTTGGATTAGACCAGAAAG+TGG | + | chr8_3:53931965-53931984 | None:intergenic | 35.0% |
| CCTGAGGGAAAAGAATAATT+TGG | + | chr8_3:53931982-53932001 | None:intergenic | 35.0% | |
| ! | CCAAATTATTCTTTTCCCTC+AGG | - | chr8_3:53931979-53931998 | Msa1295720:intron | 35.0% |
| TATTAACCGCCAAAAGGATA+AGG | - | chr8_3:53932026-53932045 | Msa1295720:CDS | 35.0% | |
| ! | AAATTCGGACCTTATCCTTT+TGG | + | chr8_3:53932038-53932057 | None:intergenic | 35.0% |
| ! | TGCCAAGGGTATGAAAAATT+CGG | + | chr8_3:53932053-53932072 | None:intergenic | 35.0% |
| !! | TTTACCAACATATTTGGTGC+TGG | + | chr8_3:53932095-53932114 | None:intergenic | 35.0% |
| CCTCACTTTACCAACATATT+TGG | + | chr8_3:53932101-53932120 | None:intergenic | 35.0% | |
| ! | CCAAATATGTTGGTAAAGTG+AGG | - | chr8_3:53932098-53932117 | Msa1295720:CDS | 35.0% |
| GACTTACGCTTCTATTCTAT+CGG | - | chr8_3:53932145-53932164 | Msa1295720:intron | 35.0% | |
| TTGTGAAGATTATAAGGGGA+TGG | + | chr8_3:53932179-53932198 | None:intergenic | 35.0% | |
| CATATGGCAGGTCTAAATTT+CGG | - | chr8_3:53932212-53932231 | Msa1295720:intron | 35.0% | |
| ATATGGCAGGTCTAAATTTC+GGG | - | chr8_3:53932213-53932232 | Msa1295720:intron | 35.0% | |
| ! | ACCATTTCTTATGAGGTGTT+CGG | - | chr8_3:53932369-53932388 | Msa1295720:intron | 35.0% |
| ATGATGCAGTACATTCTTCT+TGG | + | chr8_3:53932402-53932421 | None:intergenic | 35.0% | |
| TAACATCGTTACCACTATTC+AGG | - | chr8_3:53932428-53932447 | Msa1295720:intron | 35.0% | |
| TTAGGTAACAATGTTAGACC+GGG | + | chr8_3:53932466-53932485 | None:intergenic | 35.0% | |
| GCAGAGTATGAATTTGTCAT+TGG | + | chr8_3:53932538-53932557 | None:intergenic | 35.0% | |
| ! | TCTACCACCTGAATTACTTT+TGG | - | chr8_3:53931767-53931786 | Msa1295720:CDS | 35.0% |
| GTGCTTCAGTATGTAAATCA+TGG | - | chr8_3:53931851-53931870 | Msa1295720:CDS | 35.0% | |
| CTTCAGTATGTAAATCATGG+AGG | - | chr8_3:53931854-53931873 | Msa1295720:CDS | 35.0% | |
| ACTACCTGCTTCAATGAAAT+AGG | + | chr8_3:53931930-53931949 | None:intergenic | 35.0% | |
| CAATTATTTCACCCACTTTC+TGG | - | chr8_3:53931950-53931969 | Msa1295720:intron | 35.0% | |
| ! | TTTGGATTAGACCAGAAAGT+GGG | + | chr8_3:53931964-53931983 | None:intergenic | 35.0% |
| ! | ATTTGGATTAGACCAGAAAG+TGG | + | chr8_3:53931965-53931984 | None:intergenic | 35.0% |
| CCTGAGGGAAAAGAATAATT+TGG | + | chr8_3:53931982-53932001 | None:intergenic | 35.0% | |
| ! | CCAAATTATTCTTTTCCCTC+AGG | - | chr8_3:53931979-53931998 | Msa1295720:intron | 35.0% |
| TATTAACCGCCAAAAGGATA+AGG | - | chr8_3:53932026-53932045 | Msa1295720:CDS | 35.0% | |
| ! | AAATTCGGACCTTATCCTTT+TGG | + | chr8_3:53932038-53932057 | None:intergenic | 35.0% |
| ! | TGCCAAGGGTATGAAAAATT+CGG | + | chr8_3:53932053-53932072 | None:intergenic | 35.0% |
| !! | TTTACCAACATATTTGGTGC+TGG | + | chr8_3:53932095-53932114 | None:intergenic | 35.0% |
| CCTCACTTTACCAACATATT+TGG | + | chr8_3:53932101-53932120 | None:intergenic | 35.0% | |
| ! | CCAAATATGTTGGTAAAGTG+AGG | - | chr8_3:53932098-53932117 | Msa1295720:CDS | 35.0% |
| GACTTACGCTTCTATTCTAT+CGG | - | chr8_3:53932145-53932164 | Msa1295720:intron | 35.0% | |
| TTGTGAAGATTATAAGGGGA+TGG | + | chr8_3:53932179-53932198 | None:intergenic | 35.0% | |
| CATATGGCAGGTCTAAATTT+CGG | - | chr8_3:53932212-53932231 | Msa1295720:intron | 35.0% | |
| ATATGGCAGGTCTAAATTTC+GGG | - | chr8_3:53932213-53932232 | Msa1295720:intron | 35.0% | |
| ! | ACCATTTCTTATGAGGTGTT+CGG | - | chr8_3:53932369-53932388 | Msa1295720:intron | 35.0% |
| ATGATGCAGTACATTCTTCT+TGG | + | chr8_3:53932402-53932421 | None:intergenic | 35.0% | |
| TAACATCGTTACCACTATTC+AGG | - | chr8_3:53932428-53932447 | Msa1295720:intron | 35.0% | |
| TTAGGTAACAATGTTAGACC+GGG | + | chr8_3:53932466-53932485 | None:intergenic | 35.0% | |
| GCAGAGTATGAATTTGTCAT+TGG | + | chr8_3:53932538-53932557 | None:intergenic | 35.0% | |
| CTGTCCAAAAGTAATTCAGG+TGG | + | chr8_3:53931774-53931793 | None:intergenic | 40.0% | |
| TTGAAGAGACTGAGACATCT+TGG | - | chr8_3:53931803-53931822 | Msa1295720:CDS | 40.0% | |
| ! | GTCCGAATTTTTCATACCCT+TGG | - | chr8_3:53932048-53932067 | Msa1295720:CDS | 40.0% |
| GAAAAATCATCTGCTGCCAA+GGG | + | chr8_3:53932067-53932086 | None:intergenic | 40.0% | |
| AGAAAAATCATCTGCTGCCA+AGG | + | chr8_3:53932068-53932087 | None:intergenic | 40.0% | |
| TATGGCAGGTCTAAATTTCG+GGG | - | chr8_3:53932214-53932233 | Msa1295720:intron | 40.0% | |
| ACCGAACACCTCATAAGAAA+TGG | + | chr8_3:53932373-53932392 | None:intergenic | 40.0% | |
| ! | CTTATGAGGTGTTCGGTAAA+AGG | - | chr8_3:53932376-53932395 | Msa1295720:intron | 40.0% |
| ATCGTTACCACTATTCAGGA+AGG | - | chr8_3:53932432-53932451 | Msa1295720:intron | 40.0% | |
| TCGTTACCACTATTCAGGAA+GGG | - | chr8_3:53932433-53932452 | Msa1295720:intron | 40.0% | |
| CTGTCCAAAAGTAATTCAGG+TGG | + | chr8_3:53931774-53931793 | None:intergenic | 40.0% | |
| TTGAAGAGACTGAGACATCT+TGG | - | chr8_3:53931803-53931822 | Msa1295720:CDS | 40.0% | |
| ! | GTCCGAATTTTTCATACCCT+TGG | - | chr8_3:53932048-53932067 | Msa1295720:CDS | 40.0% |
| GAAAAATCATCTGCTGCCAA+GGG | + | chr8_3:53932067-53932086 | None:intergenic | 40.0% | |
| AGAAAAATCATCTGCTGCCA+AGG | + | chr8_3:53932068-53932087 | None:intergenic | 40.0% | |
| TATGGCAGGTCTAAATTTCG+GGG | - | chr8_3:53932214-53932233 | Msa1295720:intron | 40.0% | |
| ACCGAACACCTCATAAGAAA+TGG | + | chr8_3:53932373-53932392 | None:intergenic | 40.0% | |
| ! | CTTATGAGGTGTTCGGTAAA+AGG | - | chr8_3:53932376-53932395 | Msa1295720:intron | 40.0% |
| ATCGTTACCACTATTCAGGA+AGG | - | chr8_3:53932432-53932451 | Msa1295720:intron | 40.0% | |
| TCGTTACCACTATTCAGGAA+GGG | - | chr8_3:53932433-53932452 | Msa1295720:intron | 40.0% | |
| CTTGACGATCTCTAACGTGA+CGG | + | chr8_3:53931881-53931900 | None:intergenic | 45.0% | |
| ! | TTCGGACCTTATCCTTTTGG+CGG | + | chr8_3:53932035-53932054 | None:intergenic | 45.0% |
| CAAGCCAGCACCAAATATGT+TGG | - | chr8_3:53932088-53932107 | Msa1295720:CDS | 45.0% | |
| TATCCTCTTGGTCGACAGTT+TGG | + | chr8_3:53932292-53932311 | None:intergenic | 45.0% | |
| CTACATGCTCGAACTCTTCT+TGG | + | chr8_3:53932336-53932355 | None:intergenic | 45.0% | |
| CGTTACCACTATTCAGGAAG+GGG | - | chr8_3:53932434-53932453 | Msa1295720:intron | 45.0% | |
| GTTACCACTATTCAGGAAGG+GGG | - | chr8_3:53932435-53932454 | Msa1295720:intron | 45.0% | |
| ! | TTTTCCCCCTTCCTGAATAG+TGG | + | chr8_3:53932442-53932461 | None:intergenic | 45.0% |
| ! | TGAACCTTTTCCTCCTTCAC+CGG | - | chr8_3:53932495-53932514 | Msa1295720:intron | 45.0% |
| !! | GGACTTTTTCCCTTTAGTGC+CGG | + | chr8_3:53932517-53932536 | None:intergenic | 45.0% |
| !! | TTAGTCCTGGTAGCTCTGAT+GGG | + | chr8_3:53932564-53932583 | None:intergenic | 45.0% |
| CTTGACGATCTCTAACGTGA+CGG | + | chr8_3:53931881-53931900 | None:intergenic | 45.0% | |
| ! | TTCGGACCTTATCCTTTTGG+CGG | + | chr8_3:53932035-53932054 | None:intergenic | 45.0% |
| CAAGCCAGCACCAAATATGT+TGG | - | chr8_3:53932088-53932107 | Msa1295720:CDS | 45.0% | |
| TATCCTCTTGGTCGACAGTT+TGG | + | chr8_3:53932292-53932311 | None:intergenic | 45.0% | |
| CTACATGCTCGAACTCTTCT+TGG | + | chr8_3:53932336-53932355 | None:intergenic | 45.0% | |
| CGTTACCACTATTCAGGAAG+GGG | - | chr8_3:53932434-53932453 | Msa1295720:intron | 45.0% | |
| GTTACCACTATTCAGGAAGG+GGG | - | chr8_3:53932435-53932454 | Msa1295720:intron | 45.0% | |
| ! | TTTTCCCCCTTCCTGAATAG+TGG | + | chr8_3:53932442-53932461 | None:intergenic | 45.0% |
| ! | TGAACCTTTTCCTCCTTCAC+CGG | - | chr8_3:53932495-53932514 | Msa1295720:intron | 45.0% |
| !! | GGACTTTTTCCCTTTAGTGC+CGG | + | chr8_3:53932517-53932536 | None:intergenic | 45.0% |
| !! | TTAGTCCTGGTAGCTCTGAT+GGG | + | chr8_3:53932564-53932583 | None:intergenic | 45.0% |
| GTCAAGACACGTCAGCAATG+TGG | - | chr8_3:53931895-53931914 | Msa1295720:CDS | 50.0% | |
| CAACCAAACTGTCGACCAAG+AGG | - | chr8_3:53932286-53932305 | Msa1295720:CDS | 50.0% | |
| !! | TTTCCCTTTAGTGCCGGTGA+AGG | + | chr8_3:53932511-53932530 | None:intergenic | 50.0% |
| !! | CTTAGTCCTGGTAGCTCTGA+TGG | + | chr8_3:53932565-53932584 | None:intergenic | 50.0% |
| GAGCTACCAGGACTAAGTCA+AGG | - | chr8_3:53932568-53932587 | Msa1295720:CDS | 50.0% | |
| ACCAGGACTAAGTCAAGGCT+TGG | - | chr8_3:53932573-53932592 | Msa1295720:CDS | 50.0% | |
| GTCAAGACACGTCAGCAATG+TGG | - | chr8_3:53931895-53931914 | Msa1295720:CDS | 50.0% | |
| CAACCAAACTGTCGACCAAG+AGG | - | chr8_3:53932286-53932305 | Msa1295720:CDS | 50.0% | |
| !! | TTTCCCTTTAGTGCCGGTGA+AGG | + | chr8_3:53932511-53932530 | None:intergenic | 50.0% |
| !! | CTTAGTCCTGGTAGCTCTGA+TGG | + | chr8_3:53932565-53932584 | None:intergenic | 50.0% |
| GAGCTACCAGGACTAAGTCA+AGG | - | chr8_3:53932568-53932587 | Msa1295720:CDS | 50.0% | |
| ACCAGGACTAAGTCAAGGCT+TGG | - | chr8_3:53932573-53932592 | Msa1295720:CDS | 50.0% | |
| TGAACTGCAGCATCACGTGG+AGG | + | chr8_3:53932268-53932287 | None:intergenic | 55.0% | |
| GGTTGAACTGCAGCATCACG+TGG | + | chr8_3:53932271-53932290 | None:intergenic | 55.0% | |
| TTCAGGAAGGGGGAAAAGCC+CGG | - | chr8_3:53932445-53932464 | Msa1295720:intron | 55.0% | |
| !! | AGTGCCGGTGAAGGAGGAAA+AGG | + | chr8_3:53932502-53932521 | None:intergenic | 55.0% |
| TCCTCCTTCACCGGCACTAA+AGG | - | chr8_3:53932504-53932523 | Msa1295720:intron | 55.0% | |
| CCTCCTTCACCGGCACTAAA+GGG | - | chr8_3:53932505-53932524 | Msa1295720:intron | 55.0% | |
| GCAATCCCATCAGAGCTACC+AGG | - | chr8_3:53932556-53932575 | Msa1295720:CDS | 55.0% | |
| GCCAAGCCTTGACTTAGTCC+TGG | + | chr8_3:53932577-53932596 | None:intergenic | 55.0% | |
| TGAACTGCAGCATCACGTGG+AGG | + | chr8_3:53932268-53932287 | None:intergenic | 55.0% | |
| GGTTGAACTGCAGCATCACG+TGG | + | chr8_3:53932271-53932290 | None:intergenic | 55.0% | |
| TTCAGGAAGGGGGAAAAGCC+CGG | - | chr8_3:53932445-53932464 | Msa1295720:intron | 55.0% | |
| !! | AGTGCCGGTGAAGGAGGAAA+AGG | + | chr8_3:53932502-53932521 | None:intergenic | 55.0% |
| TCCTCCTTCACCGGCACTAA+AGG | - | chr8_3:53932504-53932523 | Msa1295720:intron | 55.0% | |
| CCTCCTTCACCGGCACTAAA+GGG | - | chr8_3:53932505-53932524 | Msa1295720:intron | 55.0% | |
| GCAATCCCATCAGAGCTACC+AGG | - | chr8_3:53932556-53932575 | Msa1295720:CDS | 55.0% | |
| GCCAAGCCTTGACTTAGTCC+TGG | + | chr8_3:53932577-53932596 | None:intergenic | 55.0% | |
| !! | CCCTTTAGTGCCGGTGAAGG+AGG | + | chr8_3:53932508-53932527 | None:intergenic | 60.0% |
| CAAGGCTTGGCCACGAGTGT+TGG | - | chr8_3:53932586-53932605 | Msa1295720:CDS | 60.0% | |
| !! | CCCTTTAGTGCCGGTGAAGG+AGG | + | chr8_3:53932508-53932527 | None:intergenic | 60.0% |
| CAAGGCTTGGCCACGAGTGT+TGG | - | chr8_3:53932586-53932605 | Msa1295720:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53931751 | 53932615 | 53931751 | ID=Msa1295720;Name=Msa1295720 |
| chr8_3 | mRNA | 53931751 | 53932615 | 53931751 | ID=Msa1295720-mRNA-1;Parent=Msa1295720;Name=Msa1295720-mRNA-1;_AED=0.44;_eAED=0.51;_QI=0|0|0|1|1|1|4|0|177 |
| chr8_3 | exon | 53932508 | 53932615 | 53932508 | ID=Msa1295720-mRNA-1:exon:15581;Parent=Msa1295720-mRNA-1 |
| chr8_3 | exon | 53932247 | 53932365 | 53932247 | ID=Msa1295720-mRNA-1:exon:15580;Parent=Msa1295720-mRNA-1 |
| chr8_3 | exon | 53932004 | 53932144 | 53932004 | ID=Msa1295720-mRNA-1:exon:15579;Parent=Msa1295720-mRNA-1 |
| chr8_3 | exon | 53931751 | 53931916 | 53931751 | ID=Msa1295720-mRNA-1:exon:15578;Parent=Msa1295720-mRNA-1 |
| chr8_3 | CDS | 53932508 | 53932615 | 53932508 | ID=Msa1295720-mRNA-1:cds;Parent=Msa1295720-mRNA-1 |
| chr8_3 | CDS | 53932247 | 53932365 | 53932247 | ID=Msa1295720-mRNA-1:cds;Parent=Msa1295720-mRNA-1 |
| chr8_3 | CDS | 53932004 | 53932144 | 53932004 | ID=Msa1295720-mRNA-1:cds;Parent=Msa1295720-mRNA-1 |
| chr8_3 | CDS | 53931751 | 53931916 | 53931751 | ID=Msa1295720-mRNA-1:cds;Parent=Msa1295720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
