AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295730 MtrunA17_Chr8g0373341 55.241 353 86 5 1 313 1 321 8.97e-117 339
Msa1295730 MtrunA17_Chr8g0373001 65.278 216 57 3 1 210 1 204 2.78e-91 278
Msa1295730 MtrunA17_Chr8g0373001 48.000 125 42 3 210 312 279 402 3.05e-24 101
Msa1295730 MtrunA17_Chr8g0373331 45.115 348 156 9 1 314 1 347 1.87e-87 266
Msa1295730 MtrunA17_Chr8g0373361 62.857 210 64 2 1 210 11 206 5.59e-86 264
Msa1295730 MtrunA17_Chr5g0404321 53.670 218 81 4 1 210 1 206 2.75e-74 234
Msa1295730 MtrunA17_Chr5g0404321 43.382 136 70 3 179 312 276 406 3.32e-22 96.3
Msa1295730 MtrunA17_Chr1g0155301 50.215 233 82 6 1 210 1 222 3.12e-62 203
Msa1295730 MtrunA17_Chr1g0155301 53.488 86 37 2 229 312 328 412 6.99e-17 80.9
Msa1295730 MtrunA17_Chr1g0156151 46.818 220 93 5 1 210 1 206 7.89e-52 170
Msa1295730 MtrunA17_Chr1g0201891 41.850 227 111 4 1 219 1 214 3.92e-49 169
Msa1295730 MtrunA17_Chr2g0286441 38.934 244 132 3 13 253 4 233 1.46e-48 167
Msa1295730 MtrunA17_Chr2g0286441 41.463 82 47 1 231 312 303 383 1.34e-12 67.8
Msa1295730 MtrunA17_Chr2g0278511 39.744 234 122 5 1 227 1 222 6.72e-48 166
Msa1295730 MtrunA17_Chr2g0278511 41.111 90 44 2 231 312 329 417 1.96e-11 64.3
Msa1295730 MtrunA17_Chr2g0315641 49.390 164 68 2 50 210 42 193 1.99e-45 158
Msa1295730 MtrunA17_Chr1g0196071 37.445 227 119 4 1 220 1 211 3.62e-44 155
Msa1295730 MtrunA17_Chr1g0196071 45.263 95 50 2 218 312 300 392 2.21e-15 76.3
Msa1295730 MtrunA17_Chr8g0373351 36.875 320 123 15 34 312 3 284 9.21e-41 144
Msa1295730 MtrunA17_Chr2g0315651 42.197 173 85 2 38 207 25 185 6.54e-36 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295730 AT2G18280.2 52.074 217 77 7 1 209 1 198 6.96e-61 199
Msa1295730 AT2G18280.2 38.710 124 55 4 209 312 261 383 7.79e-15 75.1
Msa1295730 AT2G18280.1 52.074 217 77 7 1 209 1 198 6.96e-61 199
Msa1295730 AT2G18280.1 38.710 124 55 4 209 312 261 383 7.79e-15 75.1
Msa1295730 AT1G47270.3 50.811 185 77 3 43 224 37 210 6.13e-55 184
Msa1295730 AT1G47270.3 46.067 89 42 2 229 312 291 378 2.14e-14 73.6
Msa1295730 AT1G47270.2 50.811 185 77 3 43 224 61 234 9.33e-55 184
Msa1295730 AT1G47270.2 46.067 89 42 2 229 312 315 402 2.41e-14 73.6
Msa1295730 AT1G47270.1 50.811 185 77 3 43 224 62 235 1.07e-54 184
Msa1295730 AT1G47270.1 46.067 89 42 2 229 312 316 403 2.49e-14 73.6
Msa1295730 AT2G47900.3 42.593 216 109 4 1 211 1 206 6.73e-51 174
Msa1295730 AT2G47900.3 42.683 82 46 1 231 312 317 397 5.16e-12 66.6
Msa1295730 AT2G47900.2 42.593 216 108 4 1 211 1 205 1.04e-50 173
Msa1295730 AT2G47900.2 42.683 82 46 1 231 312 316 396 4.96e-12 66.6
Msa1295730 AT2G47900.1 42.593 216 108 4 1 211 1 205 1.04e-50 173
Msa1295730 AT2G47900.1 42.683 82 46 1 231 312 316 396 4.96e-12 66.6
Msa1295730 AT1G76900.2 49.412 170 72 2 45 211 52 210 8.68e-47 164
Msa1295730 AT1G76900.1 49.412 170 72 2 45 211 52 210 8.68e-47 164
Msa1295730 AT1G76900.3 49.412 170 72 2 45 211 52 210 8.68e-47 164
Msa1295730 AT1G25280.1 43.719 199 95 4 15 210 27 211 2.18e-42 152
Msa1295730 AT1G25280.1 41.584 101 45 2 225 312 336 435 2.22e-12 67.8
Msa1295730 AT1G53320.1 43.284 201 94 4 17 210 8 195 1.03e-41 149
Msa1295730 AT1G43640.1 37.900 219 117 5 1 211 1 208 2.42e-41 149
Msa1295730 AT3G06380.1 43.210 162 76 3 50 207 33 182 1.07e-34 130
Msa1295730 AT1G43640.2 42.484 153 74 2 62 211 1 142 1.31e-34 129
Msa1295730 AT5G18680.1 40.964 166 76 4 49 207 38 188 3.36e-32 124
Msa1295730 AT5G18680.1 41.379 87 46 1 231 312 293 379 2.85e-12 67.4
Msa1295730 AT1G61940.2 48.837 86 44 0 53 138 1 86 6.35e-21 90.5
Msa1295730 AT1G61940.1 38.182 110 56 3 53 157 1 103 2.62e-14 71.6
Msa1295730 AT5G18680.2 38.182 110 47 3 104 207 2 96 6.67e-14 71.2
Msa1295730 AT5G18680.2 41.379 87 46 1 231 312 201 287 1.65e-12 67.4
Msa1295730 AT3G06380.2 37.755 98 46 2 113 207 5 90 1.19e-13 70.5
Msa1295730 AT1G25280.3 41.584 101 45 2 225 312 158 257 9.73e-13 67.8
Msa1295730 AT1G25280.2 41.584 101 45 2 225 312 158 257 9.73e-13 67.8

Find 60 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTACATTCCTGATGTATT+TGG 0.141198 8_3:-53936439 Msa1295730:CDS
TTTCTCCTGCATTGCAAAAT+TGG 0.167272 8_3:-53935695 Msa1295730:CDS
ATATTCACTGTGTTTGAAAA+AGG 0.209880 8_3:+53936380 None:intergenic
ATTACCTGCTTCAATGAAAT+AGG 0.231585 8_3:+53936602 None:intergenic
TCTACCACATGAATTGCTTT+TGG 0.292282 8_3:-53936768 Msa1295730:CDS
TGGTTGGGGCGCTGACTTCA+TGG 0.327338 8_3:-53935778 Msa1295730:CDS
CATGGCATTGCTTTATTAAG+AGG 0.337844 8_3:-53936473 Msa1295730:CDS
TTGAAGAGAGTGAGAGATAT+TGG 0.344771 8_3:-53936730 Msa1295730:CDS
TGCTTTCCTACATGCAAGAT+TGG 0.359787 8_3:+53935672 None:intergenic
CCCTGTCGAATAGGTTCAAT+TGG 0.384099 8_3:+53936803 None:intergenic
GCAGATGGCAAAGGCTTGTA+AGG 0.435286 8_3:+53935602 None:intergenic
GGATGAGCAACACAATGGTT+GGG 0.438423 8_3:-53935793 Msa1295730:CDS
GCCCATTGTCCCTGTCGAAT+AGG 0.441616 8_3:+53936794 None:intergenic
GTGCTTCGGTATGTAAATCA+TGG 0.451227 8_3:-53936682 Msa1295730:CDS
TTTGCCATCTGCTTGATTCG+TGG 0.452748 8_3:-53935591 Msa1295730:CDS
ACCTATTCGACAGGGACAAT+GGG 0.460081 8_3:-53936795 Msa1295730:CDS
ATTTCCTATTTCATTGAAGC+AGG 0.465510 8_3:-53936606 Msa1295730:intron
TCCAATTGAACCTATTCGAC+AGG 0.466852 8_3:-53936804 Msa1295730:CDS
GTCAAACTCACATCTTGCTC+TGG 0.476106 8_3:-53936834 Msa1295730:CDS
TAAATTGCTCCAAATACATC+AGG 0.480012 8_3:+53936430 None:intergenic
AAGCATGGTCGGAGAAATCA+AGG 0.483624 8_3:-53936912 Msa1295730:CDS
TCTCACTCTCTTCAACCCTT+CGG 0.484378 8_3:+53936738 None:intergenic
GGTTGGGGCGCTGACTTCAT+GGG 0.486960 8_3:-53935777 Msa1295730:CDS
CATGGATAAGCACGGGGACC+AGG 0.488976 8_3:+53936492 None:intergenic
GGGATGAGCAACACAATGGT+TGG 0.490209 8_3:-53935794 Msa1295730:CDS
AGTTGTTATTAGCCGCGAAA+AGG 0.500183 8_3:-53936127 Msa1295730:CDS
CTGGTCCCCGTGCTTATCCA+TGG 0.526433 8_3:-53936491 Msa1295730:CDS
GGTCAAGGATATGACGAAGT+TGG 0.533662 8_3:+53936094 None:intergenic
AACCTATTCGACAGGGACAA+TGG 0.535821 8_3:-53936796 Msa1295730:CDS
TCACAGTGGAAACTCTAAAA+CGG 0.540216 8_3:+53935754 None:intergenic
AATGAGACTTGGCTCAGTGC+TGG 0.542748 8_3:+53935852 None:intergenic
AACTTCGTCATATCCTTGAC+CGG 0.561301 8_3:-53936092 Msa1295730:CDS
TAAAGGTCTCAAATGAGACT+TGG 0.571910 8_3:+53935841 None:intergenic
GCAATGCCATGGATAAGCAC+GGG 0.572431 8_3:+53936485 None:intergenic
AAGACAACAGCAGAACGTGC+AGG 0.573108 8_3:+53936707 None:intergenic
CTCTTAATAAAGCAATGCCA+TGG 0.575671 8_3:+53936474 None:intergenic
AATGTCGTATATAGTAAACT+TGG 0.577346 8_3:+53935911 None:intergenic
GATGAGCAACACAATGGTTG+GGG 0.586136 8_3:-53935792 Msa1295730:CDS
ATGGCATTGAAAAGCATGGT+CGG 0.597357 8_3:-53936923 Msa1295730:CDS
AATTGGCCAATCTTGCATGT+AGG 0.601422 8_3:-53935678 Msa1295730:CDS
AAAGTAACATCAAATACAGA+AGG 0.603480 8_3:+53935885 None:intergenic
ACGAATCAAGCAGATGGCAA+AGG 0.605785 8_3:+53935593 None:intergenic
AGCAATGCCATGGATAAGCA+CGG 0.608496 8_3:+53936484 None:intergenic
ATCAAGACTCTTCCGCAATG+TGG 0.608567 8_3:-53936638 Msa1295730:CDS
ACTTGGCTCAGTGCTGGTGA+AGG 0.615559 8_3:+53935858 None:intergenic
TATGAGATCGATCAACTACA+AGG 0.618807 8_3:+53935721 None:intergenic
AAACATGGCATTGAAAAGCA+TGG 0.626528 8_3:-53936927 None:intergenic
ACAAATATGTTTGTAAACTG+CGG 0.627962 8_3:-53936046 Msa1295730:intron
TAGCCGCGAAAAGGATAAGA+CGG 0.633325 8_3:-53936118 Msa1295730:CDS
CATGCCACGAATCAAGCAGA+TGG 0.639936 8_3:+53935587 None:intergenic
CCAATTGAACCTATTCGACA+GGG 0.652941 8_3:-53936803 Msa1295730:CDS
AAGGCTTGTAAGGAAGAGAG+TGG 0.656514 8_3:+53935612 None:intergenic
GCATGGTCGGAGAAATCAAG+GGG 0.659382 8_3:-53936910 Msa1295730:CDS
AGCATGGTCGGAGAAATCAA+GGG 0.684102 8_3:-53936911 Msa1295730:CDS
ATGTCCAAAAGCAATTCATG+TGG 0.684608 8_3:+53936764 None:intergenic
CAATGCCATGGATAAGCACG+GGG 0.702540 8_3:+53936486 None:intergenic
ATATGGGATGAGCAACACAA+TGG 0.702664 8_3:-53935798 Msa1295730:CDS
AAGGTCAAAGTTTCTCACAG+TGG 0.704452 8_3:+53935740 None:intergenic
CTTCGGTATGTAAATCATGG+AGG 0.716243 8_3:-53936679 Msa1295730:CDS
AATGTGATCATTCCACATTG+CGG 0.763720 8_3:+53936626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTGATTTTTATACATA+TGG - chr8_3:53936553-53936572 Msa1295730:intron 15.0%
!!! CAATTTGATTTTTATACATA+TGG - chr8_3:53936553-53936572 Msa1295730:intron 15.0%
!! TTAAAAATGGAATATCAAAG+CGG - chr8_3:53935621-53935640 Msa1295730:CDS 20.0%
!! AAAATACATGTAAGAGAAAT+AGG + chr8_3:53936292-53936311 None:intergenic 20.0%
!! TGTATAAAAATCAAATTGTG+AGG + chr8_3:53936551-53936570 None:intergenic 20.0%
!! TTAAAAATGGAATATCAAAG+CGG - chr8_3:53935621-53935640 Msa1295730:CDS 20.0%
!! AAAATACATGTAAGAGAAAT+AGG + chr8_3:53936292-53936311 None:intergenic 20.0%
!! TGTATAAAAATCAAATTGTG+AGG + chr8_3:53936551-53936570 None:intergenic 20.0%
! TAAAAATGGAATATCAAAGC+GGG - chr8_3:53935622-53935641 Msa1295730:CDS 25.0%
! AGAGAACATAAAAATCATGA+GGG + chr8_3:53935974-53935993 None:intergenic 25.0%
! AAGAGAACATAAAAATCATG+AGG + chr8_3:53935975-53935994 None:intergenic 25.0%
! TATTCACTGTGTTTGAAAAA+GGG + chr8_3:53936129-53936148 None:intergenic 25.0%
! ATATTCACTGTGTTTGAAAA+AGG + chr8_3:53936130-53936149 None:intergenic 25.0%
! ACAAATATGTTTGTAAACTG+CGG - chr8_3:53936461-53936480 Msa1295730:CDS 25.0%
! TCAAATTGTGAGGATTATAT+GGG + chr8_3:53936541-53936560 None:intergenic 25.0%
! ATCAAATTGTGAGGATTATA+TGG + chr8_3:53936542-53936561 None:intergenic 25.0%
!! TTGATTTTTATACATATGGC+AGG - chr8_3:53936557-53936576 Msa1295730:intron 25.0%
! AATGTCGTATATAGTAAACT+TGG + chr8_3:53936599-53936618 None:intergenic 25.0%
! AAAGTAACATCAAATACAGA+AGG + chr8_3:53936625-53936644 None:intergenic 25.0%
!!! AGTCTTGTTTTTGAGTATAA+AGG + chr8_3:53936686-53936705 None:intergenic 25.0%
! TCAAAAACAAGACTCTTATA+TGG - chr8_3:53936692-53936711 Msa1295730:CDS 25.0%
! CAAAAACAAGACTCTTATAT+GGG - chr8_3:53936693-53936712 Msa1295730:CDS 25.0%
! TAAAAATGGAATATCAAAGC+GGG - chr8_3:53935622-53935641 Msa1295730:CDS 25.0%
! AGAGAACATAAAAATCATGA+GGG + chr8_3:53935974-53935993 None:intergenic 25.0%
! AAGAGAACATAAAAATCATG+AGG + chr8_3:53935975-53935994 None:intergenic 25.0%
! TATTCACTGTGTTTGAAAAA+GGG + chr8_3:53936129-53936148 None:intergenic 25.0%
! ATATTCACTGTGTTTGAAAA+AGG + chr8_3:53936130-53936149 None:intergenic 25.0%
! ACAAATATGTTTGTAAACTG+CGG - chr8_3:53936461-53936480 Msa1295730:CDS 25.0%
! TCAAATTGTGAGGATTATAT+GGG + chr8_3:53936541-53936560 None:intergenic 25.0%
! ATCAAATTGTGAGGATTATA+TGG + chr8_3:53936542-53936561 None:intergenic 25.0%
!! TTGATTTTTATACATATGGC+AGG - chr8_3:53936557-53936576 Msa1295730:intron 25.0%
! AATGTCGTATATAGTAAACT+TGG + chr8_3:53936599-53936618 None:intergenic 25.0%
! AAAGTAACATCAAATACAGA+AGG + chr8_3:53936625-53936644 None:intergenic 25.0%
!!! AGTCTTGTTTTTGAGTATAA+AGG + chr8_3:53936686-53936705 None:intergenic 25.0%
! TCAAAAACAAGACTCTTATA+TGG - chr8_3:53936692-53936711 Msa1295730:CDS 25.0%
! CAAAAACAAGACTCTTATAT+GGG - chr8_3:53936693-53936712 Msa1295730:CDS 25.0%
GAAATCAAGGGGATTAAAAA+TGG - chr8_3:53935608-53935627 Msa1295730:CDS 30.0%
AAAAATGGAATATCAAAGCG+GGG - chr8_3:53935623-53935642 Msa1295730:CDS 30.0%
ATTTCCTATTTCATTGAAGC+AGG - chr8_3:53935901-53935920 Msa1295730:CDS 30.0%
ATTACCTGCTTCAATGAAAT+AGG + chr8_3:53935908-53935927 None:intergenic 30.0%
TAAATTATTCACCCACTTTC+TGG - chr8_3:53935927-53935946 Msa1295730:CDS 30.0%
TTCTACATTCCTGATGTATT+TGG - chr8_3:53936068-53936087 Msa1295730:CDS 30.0%
TAAATTGCTCCAAATACATC+AGG + chr8_3:53936080-53936099 None:intergenic 30.0%
!!! TTAAGCAGTTTGTTTTGGTT+TGG - chr8_3:53936325-53936344 Msa1295730:intron 30.0%
!!! TATGTTTTGGTCGATAGAAA+CGG - chr8_3:53936484-53936503 Msa1295730:CDS 30.0%
AAATTGTGAGGATTATATGG+GGG + chr8_3:53936539-53936558 None:intergenic 30.0%
CAAATTGTGAGGATTATATG+GGG + chr8_3:53936540-53936559 None:intergenic 30.0%
! ATATGGCAGGTCAAATTTTT+GGG - chr8_3:53936570-53936589 Msa1295730:intron 30.0%
GAAATCAAGGGGATTAAAAA+TGG - chr8_3:53935608-53935627 Msa1295730:CDS 30.0%
AAAAATGGAATATCAAAGCG+GGG - chr8_3:53935623-53935642 Msa1295730:CDS 30.0%
ATTTCCTATTTCATTGAAGC+AGG - chr8_3:53935901-53935920 Msa1295730:CDS 30.0%
ATTACCTGCTTCAATGAAAT+AGG + chr8_3:53935908-53935927 None:intergenic 30.0%
TAAATTATTCACCCACTTTC+TGG - chr8_3:53935927-53935946 Msa1295730:CDS 30.0%
TTCTACATTCCTGATGTATT+TGG - chr8_3:53936068-53936087 Msa1295730:CDS 30.0%
TAAATTGCTCCAAATACATC+AGG + chr8_3:53936080-53936099 None:intergenic 30.0%
!!! TTAAGCAGTTTGTTTTGGTT+TGG - chr8_3:53936325-53936344 Msa1295730:intron 30.0%
!!! TATGTTTTGGTCGATAGAAA+CGG - chr8_3:53936484-53936503 Msa1295730:CDS 30.0%
AAATTGTGAGGATTATATGG+GGG + chr8_3:53936539-53936558 None:intergenic 30.0%
CAAATTGTGAGGATTATATG+GGG + chr8_3:53936540-53936559 None:intergenic 30.0%
! ATATGGCAGGTCAAATTTTT+GGG - chr8_3:53936570-53936589 Msa1295730:intron 30.0%
! TCTACCACATGAATTGCTTT+TGG - chr8_3:53935739-53935758 Msa1295730:CDS 35.0%
ATGTCCAAAAGCAATTCATG+TGG + chr8_3:53935746-53935765 None:intergenic 35.0%
TTGAAGAGAGTGAGAGATAT+TGG - chr8_3:53935777-53935796 Msa1295730:CDS 35.0%
!! AGTCTTGATGATCTCTTTTG+TGG + chr8_3:53935858-53935877 None:intergenic 35.0%
AATGTGATCATTCCACATTG+CGG + chr8_3:53935884-53935903 None:intergenic 35.0%
! TTTGGATTAGACCAGAAAGT+GGG + chr8_3:53935941-53935960 None:intergenic 35.0%
! ATTTGGATTAGACCAGAAAG+TGG + chr8_3:53935942-53935961 None:intergenic 35.0%
CATGAGGGAAAAGACTAATT+TGG + chr8_3:53935959-53935978 None:intergenic 35.0%
CTCTTAATAAAGCAATGCCA+TGG + chr8_3:53936036-53936055 None:intergenic 35.0%
! CATGGCATTGCTTTATTAAG+AGG - chr8_3:53936034-53936053 Msa1295730:intron 35.0%
! ACCTACTTGCTCTAAACTTA+AGG - chr8_3:53936213-53936232 Msa1295730:intron 35.0%
! TCCTTAAGTTTAGAGCAAGT+AGG + chr8_3:53936217-53936236 None:intergenic 35.0%
ATTTCTTGTCATTCCGATTG+TGG - chr8_3:53936250-53936269 Msa1295730:intron 35.0%
!! CGCATTTAAGCAGTTTGTTT+TGG - chr8_3:53936320-53936339 Msa1295730:intron 35.0%
!! TTGGTTTGGTTGTAATTGCA+TGG - chr8_3:53936339-53936358 Msa1295730:intron 35.0%
TGCTTGAGAAAAATCATCTC+CGG + chr8_3:53936437-53936456 None:intergenic 35.0%
! TTGTAAACTGCGGTATGTTT+TGG - chr8_3:53936471-53936490 Msa1295730:CDS 35.0%
! CATATGGCAGGTCAAATTTT+TGG - chr8_3:53936569-53936588 Msa1295730:intron 35.0%
! TATGGCAGGTCAAATTTTTG+GGG - chr8_3:53936571-53936590 Msa1295730:intron 35.0%
TAAAGGTCTCAAATGAGACT+TGG + chr8_3:53936669-53936688 None:intergenic 35.0%
! TCACAGTGGAAACTCTAAAA+CGG + chr8_3:53936756-53936775 None:intergenic 35.0%
TATGAGATCGATCAACTACA+AGG + chr8_3:53936789-53936808 None:intergenic 35.0%
TTTCTCCTGCATTGCAAAAT+TGG - chr8_3:53936812-53936831 Msa1295730:CDS 35.0%
! TCTACCACATGAATTGCTTT+TGG - chr8_3:53935739-53935758 Msa1295730:CDS 35.0%
ATGTCCAAAAGCAATTCATG+TGG + chr8_3:53935746-53935765 None:intergenic 35.0%
TTGAAGAGAGTGAGAGATAT+TGG - chr8_3:53935777-53935796 Msa1295730:CDS 35.0%
!! AGTCTTGATGATCTCTTTTG+TGG + chr8_3:53935858-53935877 None:intergenic 35.0%
AATGTGATCATTCCACATTG+CGG + chr8_3:53935884-53935903 None:intergenic 35.0%
! TTTGGATTAGACCAGAAAGT+GGG + chr8_3:53935941-53935960 None:intergenic 35.0%
! ATTTGGATTAGACCAGAAAG+TGG + chr8_3:53935942-53935961 None:intergenic 35.0%
CATGAGGGAAAAGACTAATT+TGG + chr8_3:53935959-53935978 None:intergenic 35.0%
CTCTTAATAAAGCAATGCCA+TGG + chr8_3:53936036-53936055 None:intergenic 35.0%
! CATGGCATTGCTTTATTAAG+AGG - chr8_3:53936034-53936053 Msa1295730:intron 35.0%
! ACCTACTTGCTCTAAACTTA+AGG - chr8_3:53936213-53936232 Msa1295730:intron 35.0%
! TCCTTAAGTTTAGAGCAAGT+AGG + chr8_3:53936217-53936236 None:intergenic 35.0%
ATTTCTTGTCATTCCGATTG+TGG - chr8_3:53936250-53936269 Msa1295730:intron 35.0%
!! CGCATTTAAGCAGTTTGTTT+TGG - chr8_3:53936320-53936339 Msa1295730:intron 35.0%
!! TTGGTTTGGTTGTAATTGCA+TGG - chr8_3:53936339-53936358 Msa1295730:intron 35.0%
TGCTTGAGAAAAATCATCTC+CGG + chr8_3:53936437-53936456 None:intergenic 35.0%
! TTGTAAACTGCGGTATGTTT+TGG - chr8_3:53936471-53936490 Msa1295730:CDS 35.0%
! CATATGGCAGGTCAAATTTT+TGG - chr8_3:53936569-53936588 Msa1295730:intron 35.0%
! TATGGCAGGTCAAATTTTTG+GGG - chr8_3:53936571-53936590 Msa1295730:intron 35.0%
TAAAGGTCTCAAATGAGACT+TGG + chr8_3:53936669-53936688 None:intergenic 35.0%
! TCACAGTGGAAACTCTAAAA+CGG + chr8_3:53936756-53936775 None:intergenic 35.0%
TATGAGATCGATCAACTACA+AGG + chr8_3:53936789-53936808 None:intergenic 35.0%
TTTCTCCTGCATTGCAAAAT+TGG - chr8_3:53936812-53936831 Msa1295730:CDS 35.0%
! ATGGCATTGAAAAGCATGGT+CGG - chr8_3:53935584-53935603 Msa1295730:CDS 40.0%
TCCAATTGAACCTATTCGAC+AGG - chr8_3:53935703-53935722 Msa1295730:CDS 40.0%
CCAATTGAACCTATTCGACA+GGG - chr8_3:53935704-53935723 Msa1295730:CDS 40.0%
! TGCTTTTGGACATAATCCGA+AGG - chr8_3:53935753-53935772 Msa1295730:CDS 40.0%
! GCTTTTGGACATAATCCGAA+GGG - chr8_3:53935754-53935773 Msa1295730:CDS 40.0%
! TGCTGTTGTCTTTTGTGCTT+CGG - chr8_3:53935811-53935830 Msa1295730:CDS 40.0%
GTGCTTCGGTATGTAAATCA+TGG - chr8_3:53935825-53935844 Msa1295730:CDS 40.0%
CTTCGGTATGTAAATCATGG+AGG - chr8_3:53935828-53935847 Msa1295730:CDS 40.0%
!! CTTGATGATCTCTTTTGTGG+CGG + chr8_3:53935855-53935874 None:intergenic 40.0%
CTTCATGTGTATGAATAGCC+TGG - chr8_3:53935997-53936016 Msa1295730:intron 40.0%
CACTGTGTTTGAAAAAGGGA+TGG + chr8_3:53936125-53936144 None:intergenic 40.0%
TGCTGAGAATGAACCACAAT+CGG + chr8_3:53936266-53936285 None:intergenic 40.0%
TTTGGTTGTAATTGCATGGC+AGG - chr8_3:53936343-53936362 Msa1295730:intron 40.0%
TTGGTTGTAATTGCATGGCA+GGG - chr8_3:53936344-53936363 Msa1295730:intron 40.0%
! AGTTGTTATTAGCCGCGAAA+AGG - chr8_3:53936380-53936399 Msa1295730:intron 40.0%
AACTTCGTCATATCCTTGAC+CGG - chr8_3:53936415-53936434 Msa1295730:CDS 40.0%
AGAAAAATCATCTCCGGTCA+AGG + chr8_3:53936431-53936450 None:intergenic 40.0%
!! ATGGCAGGTCAAATTTTTGG+GGG - chr8_3:53936572-53936591 Msa1295730:intron 40.0%
ATATGGGATGAGCAACACAA+TGG - chr8_3:53936709-53936728 Msa1295730:CDS 40.0%
AAGGTCAAAGTTTCTCACAG+TGG + chr8_3:53936770-53936789 None:intergenic 40.0%
! ATTGGCCAATTTTGCAATGC+AGG + chr8_3:53936820-53936839 None:intergenic 40.0%
AATTGGCCAATCTTGCATGT+AGG - chr8_3:53936829-53936848 Msa1295730:CDS 40.0%
TGCTTTCCTACATGCAAGAT+TGG + chr8_3:53936838-53936857 None:intergenic 40.0%
! ATGGCATTGAAAAGCATGGT+CGG - chr8_3:53935584-53935603 Msa1295730:CDS 40.0%
TCCAATTGAACCTATTCGAC+AGG - chr8_3:53935703-53935722 Msa1295730:CDS 40.0%
CCAATTGAACCTATTCGACA+GGG - chr8_3:53935704-53935723 Msa1295730:CDS 40.0%
! TGCTTTTGGACATAATCCGA+AGG - chr8_3:53935753-53935772 Msa1295730:CDS 40.0%
! GCTTTTGGACATAATCCGAA+GGG - chr8_3:53935754-53935773 Msa1295730:CDS 40.0%
! TGCTGTTGTCTTTTGTGCTT+CGG - chr8_3:53935811-53935830 Msa1295730:CDS 40.0%
GTGCTTCGGTATGTAAATCA+TGG - chr8_3:53935825-53935844 Msa1295730:CDS 40.0%
CTTCGGTATGTAAATCATGG+AGG - chr8_3:53935828-53935847 Msa1295730:CDS 40.0%
!! CTTGATGATCTCTTTTGTGG+CGG + chr8_3:53935855-53935874 None:intergenic 40.0%
CTTCATGTGTATGAATAGCC+TGG - chr8_3:53935997-53936016 Msa1295730:intron 40.0%
CACTGTGTTTGAAAAAGGGA+TGG + chr8_3:53936125-53936144 None:intergenic 40.0%
TGCTGAGAATGAACCACAAT+CGG + chr8_3:53936266-53936285 None:intergenic 40.0%
TTTGGTTGTAATTGCATGGC+AGG - chr8_3:53936343-53936362 Msa1295730:intron 40.0%
TTGGTTGTAATTGCATGGCA+GGG - chr8_3:53936344-53936363 Msa1295730:intron 40.0%
! AGTTGTTATTAGCCGCGAAA+AGG - chr8_3:53936380-53936399 Msa1295730:intron 40.0%
AACTTCGTCATATCCTTGAC+CGG - chr8_3:53936415-53936434 Msa1295730:CDS 40.0%
AGAAAAATCATCTCCGGTCA+AGG + chr8_3:53936431-53936450 None:intergenic 40.0%
!! ATGGCAGGTCAAATTTTTGG+GGG - chr8_3:53936572-53936591 Msa1295730:intron 40.0%
ATATGGGATGAGCAACACAA+TGG - chr8_3:53936709-53936728 Msa1295730:CDS 40.0%
AAGGTCAAAGTTTCTCACAG+TGG + chr8_3:53936770-53936789 None:intergenic 40.0%
! ATTGGCCAATTTTGCAATGC+AGG + chr8_3:53936820-53936839 None:intergenic 40.0%
AATTGGCCAATCTTGCATGT+AGG - chr8_3:53936829-53936848 Msa1295730:CDS 40.0%
TGCTTTCCTACATGCAAGAT+TGG + chr8_3:53936838-53936857 None:intergenic 40.0%
AAGCATGGTCGGAGAAATCA+AGG - chr8_3:53935595-53935614 Msa1295730:CDS 45.0%
AGCATGGTCGGAGAAATCAA+GGG - chr8_3:53935596-53935615 Msa1295730:CDS 45.0%
GTCAAACTCACATCTTGCTC+TGG - chr8_3:53935673-53935692 Msa1295730:CDS 45.0%
CCCTGTCGAATAGGTTCAAT+TGG + chr8_3:53935707-53935726 None:intergenic 45.0%
AACCTATTCGACAGGGACAA+TGG - chr8_3:53935711-53935730 Msa1295730:CDS 45.0%
ACCTATTCGACAGGGACAAT+GGG - chr8_3:53935712-53935731 Msa1295730:CDS 45.0%
TCTCACTCTCTTCAACCCTT+CGG + chr8_3:53935772-53935791 None:intergenic 45.0%
ATCAAGACTCTTCCGCAATG+TGG - chr8_3:53935869-53935888 Msa1295730:CDS 45.0%
AGCAATGCCATGGATAAGCA+CGG + chr8_3:53936026-53936045 None:intergenic 45.0%
TAGCCGCGAAAAGGATAAGA+CGG - chr8_3:53936389-53936408 Msa1295730:CDS 45.0%
GGTCAAGGATATGACGAAGT+TGG + chr8_3:53936416-53936435 None:intergenic 45.0%
GGATGAGCAACACAATGGTT+GGG - chr8_3:53936714-53936733 Msa1295730:CDS 45.0%
GATGAGCAACACAATGGTTG+GGG - chr8_3:53936715-53936734 Msa1295730:CDS 45.0%
AAGGCTTGTAAGGAAGAGAG+TGG + chr8_3:53936898-53936917 None:intergenic 45.0%
ACGAATCAAGCAGATGGCAA+AGG + chr8_3:53936917-53936936 None:intergenic 45.0%
! TTTGCCATCTGCTTGATTCG+TGG - chr8_3:53936916-53936935 Msa1295730:CDS 45.0%
AAGCATGGTCGGAGAAATCA+AGG - chr8_3:53935595-53935614 Msa1295730:CDS 45.0%
AGCATGGTCGGAGAAATCAA+GGG - chr8_3:53935596-53935615 Msa1295730:CDS 45.0%
GTCAAACTCACATCTTGCTC+TGG - chr8_3:53935673-53935692 Msa1295730:CDS 45.0%
CCCTGTCGAATAGGTTCAAT+TGG + chr8_3:53935707-53935726 None:intergenic 45.0%
AACCTATTCGACAGGGACAA+TGG - chr8_3:53935711-53935730 Msa1295730:CDS 45.0%
ACCTATTCGACAGGGACAAT+GGG - chr8_3:53935712-53935731 Msa1295730:CDS 45.0%
TCTCACTCTCTTCAACCCTT+CGG + chr8_3:53935772-53935791 None:intergenic 45.0%
ATCAAGACTCTTCCGCAATG+TGG - chr8_3:53935869-53935888 Msa1295730:CDS 45.0%
AGCAATGCCATGGATAAGCA+CGG + chr8_3:53936026-53936045 None:intergenic 45.0%
TAGCCGCGAAAAGGATAAGA+CGG - chr8_3:53936389-53936408 Msa1295730:CDS 45.0%
GGTCAAGGATATGACGAAGT+TGG + chr8_3:53936416-53936435 None:intergenic 45.0%
GGATGAGCAACACAATGGTT+GGG - chr8_3:53936714-53936733 Msa1295730:CDS 45.0%
GATGAGCAACACAATGGTTG+GGG - chr8_3:53936715-53936734 Msa1295730:CDS 45.0%
AAGGCTTGTAAGGAAGAGAG+TGG + chr8_3:53936898-53936917 None:intergenic 45.0%
ACGAATCAAGCAGATGGCAA+AGG + chr8_3:53936917-53936936 None:intergenic 45.0%
! TTTGCCATCTGCTTGATTCG+TGG - chr8_3:53936916-53936935 Msa1295730:CDS 45.0%
GCATGGTCGGAGAAATCAAG+GGG - chr8_3:53935597-53935616 Msa1295730:CDS 50.0%
AAGACAACAGCAGAACGTGC+AGG + chr8_3:53935803-53935822 None:intergenic 50.0%
CAATGCCATGGATAAGCACG+GGG + chr8_3:53936024-53936043 None:intergenic 50.0%
GCAATGCCATGGATAAGCAC+GGG + chr8_3:53936025-53936044 None:intergenic 50.0%
! GGACCGTCTTATCCTTTTCG+CGG + chr8_3:53936395-53936414 None:intergenic 50.0%
AATGAGACTTGGCTCAGTGC+TGG + chr8_3:53936658-53936677 None:intergenic 50.0%
GGGATGAGCAACACAATGGT+TGG - chr8_3:53936713-53936732 Msa1295730:CDS 50.0%
GCAGATGGCAAAGGCTTGTA+AGG + chr8_3:53936908-53936927 None:intergenic 50.0%
CATGCCACGAATCAAGCAGA+TGG + chr8_3:53936923-53936942 None:intergenic 50.0%
GCATGGTCGGAGAAATCAAG+GGG - chr8_3:53935597-53935616 Msa1295730:CDS 50.0%
AAGACAACAGCAGAACGTGC+AGG + chr8_3:53935803-53935822 None:intergenic 50.0%
CAATGCCATGGATAAGCACG+GGG + chr8_3:53936024-53936043 None:intergenic 50.0%
GCAATGCCATGGATAAGCAC+GGG + chr8_3:53936025-53936044 None:intergenic 50.0%
! GGACCGTCTTATCCTTTTCG+CGG + chr8_3:53936395-53936414 None:intergenic 50.0%
AATGAGACTTGGCTCAGTGC+TGG + chr8_3:53936658-53936677 None:intergenic 50.0%
GGGATGAGCAACACAATGGT+TGG - chr8_3:53936713-53936732 Msa1295730:CDS 50.0%
GCAGATGGCAAAGGCTTGTA+AGG + chr8_3:53936908-53936927 None:intergenic 50.0%
CATGCCACGAATCAAGCAGA+TGG + chr8_3:53936923-53936942 None:intergenic 50.0%
GCCCATTGTCCCTGTCGAAT+AGG + chr8_3:53935716-53935735 None:intergenic 55.0%
!! ACTTGGCTCAGTGCTGGTGA+AGG + chr8_3:53936652-53936671 None:intergenic 55.0%
GCCCATTGTCCCTGTCGAAT+AGG + chr8_3:53935716-53935735 None:intergenic 55.0%
!! ACTTGGCTCAGTGCTGGTGA+AGG + chr8_3:53936652-53936671 None:intergenic 55.0%
CATGGATAAGCACGGGGACC+AGG + chr8_3:53936018-53936037 None:intergenic 60.0%
CTGGTCCCCGTGCTTATCCA+TGG - chr8_3:53936016-53936035 Msa1295730:intron 60.0%
!! TGGTTGGGGCGCTGACTTCA+TGG - chr8_3:53936729-53936748 Msa1295730:CDS 60.0%
!! GGTTGGGGCGCTGACTTCAT+GGG - chr8_3:53936730-53936749 Msa1295730:CDS 60.0%
CATGGATAAGCACGGGGACC+AGG + chr8_3:53936018-53936037 None:intergenic 60.0%
CTGGTCCCCGTGCTTATCCA+TGG - chr8_3:53936016-53936035 Msa1295730:intron 60.0%
!! TGGTTGGGGCGCTGACTTCA+TGG - chr8_3:53936729-53936748 Msa1295730:CDS 60.0%
!! GGTTGGGGCGCTGACTTCAT+GGG - chr8_3:53936730-53936749 Msa1295730:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 53935584 53936945 53935584 ID=Msa1295730;Name=Msa1295730
chr8_3 mRNA 53935584 53936945 53935584 ID=Msa1295730-mRNA-1;Parent=Msa1295730;Name=Msa1295730-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|4|0|316
chr8_3 exon 53936607 53936945 53936607 ID=Msa1295730-mRNA-1:exon:15573;Parent=Msa1295730-mRNA-1
chr8_3 exon 53936388 53936514 53936388 ID=Msa1295730-mRNA-1:exon:15572;Parent=Msa1295730-mRNA-1
chr8_3 exon 53936047 53936164 53936047 ID=Msa1295730-mRNA-1:exon:15571;Parent=Msa1295730-mRNA-1
chr8_3 exon 53935584 53935950 53935584 ID=Msa1295730-mRNA-1:exon:15570;Parent=Msa1295730-mRNA-1
chr8_3 CDS 53936607 53936945 53936607 ID=Msa1295730-mRNA-1:cds;Parent=Msa1295730-mRNA-1
chr8_3 CDS 53936388 53936514 53936388 ID=Msa1295730-mRNA-1:cds;Parent=Msa1295730-mRNA-1
chr8_3 CDS 53936047 53936164 53936047 ID=Msa1295730-mRNA-1:cds;Parent=Msa1295730-mRNA-1
chr8_3 CDS 53935584 53935950 53935584 ID=Msa1295730-mRNA-1:cds;Parent=Msa1295730-mRNA-1
Gene Sequence

>Msa1295730

ATGGCATTGAAAAGCATGGTCGGAGAAATCAAGGGGATTAAAAATGGAATATCAAAGCGGGGTGCTGAGAGCGAGAATTTTCTCTATCAGTCAAACTCACATCTTGCTCTGGATGTATCTCCAATTGAACCTATTCGACAGGGACAATGGGCAAGTCTACCACATGAATTGCTTTTGGACATAATCCGAAGGGTTGAAGAGAGTGAGAGATATTGGCCTGCACGTTCTGCTGTTGTCTTTTGTGCTTCGGTATGTAAATCATGGAGGTCCGCCACAAAAGAGATCATCAAGACTCTTCCGCAATGTGGAATGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCCCGTGCTTATCCATGGCATTGCTTTATTAAGAGGAAGAGAAAAATTTCTACATTCCTGATGTATTTGGAGCAATTTAAGTATTTCATTGCAGAAACATACCATCCCTTTTTCAAACACAGGAATGATAAGAGTAAGTTGTTATTAGCCGCGAAAAGGATAAGACGGTCCAACTTCGTCATATCCTTGACCGGAGATGATTTTTCTCAAGCAAATAACAAATATGTTTGTAAACTGCGGTCAAATTTTTGGGGGACCAAGTTTACTATATACGACATTCAACCTTCTGTATTTGATGTTACTTTTTCTCCTTCACCAGCACTGAGCCAAGTCTCATTTGAGACCTTTATACTCAAAAACAAGACTCTTATATGGGATGAGCAACACAATGGTTGGGGCGCTGACTTCATGGGCCGTTTTAGAGTTTCCACTGTGAGAAACTTTGACCTTGTAGTTGATCGATCTCATAATGTTTCTCCTGCATTGCAAAATTGGCCAATCTTGCATGTAGGAAAGCAGTTTAGAAAAGATATATTCTTAATGTACTACGCTTATCCACTCTCTTCCTTACAAGCCTTTGCCATCTGCTTGATTCGTGGCATGTAA

Protein sequence

>Msa1295730

MALKSMVGEIKGIKNGISKRGAESENFLYQSNSHLALDVSPIEPIRQGQWASLPHELLLDIIRRVEESERYWPARSAVVFCASVCKSWRSATKEIIKTLPQCGMITFPISLKQPGPRAYPWHCFIKRKRKISTFLMYLEQFKYFIAETYHPFFKHRNDKSKLLLAAKRIRRSNFVISLTGDDFSQANNKYVCKLRSNFWGTKFTIYDIQPSVFDVTFSPSPALSQVSFETFILKNKTLIWDEQHNGWGADFMGRFRVSTVRNFDLVVDRSHNVSPALQNWPILHVGKQFRKDIFLMYYAYPLSSLQAFAICLIRGM*