Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295790 | RHN42117.1 | 92.344 | 418 | 23 | 1 | 4 | 421 | 2 | 410 | 0.0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295790 | sp|Q8GVE5|TLP2_ARATH | 47.002 | 417 | 177 | 16 | 13 | 416 | 1 | 386 | 7.58e-108 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295790 | A0A396GU36 | 92.344 | 418 | 23 | 1 | 4 | 421 | 2 | 410 | 0.0 | 784 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1295790 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295790 | MtrunA17_Chr8g0373361 | 92.344 | 418 | 23 | 1 | 4 | 421 | 2 | 410 | 0.0 | 784 |
| Msa1295790 | MtrunA17_Chr8g0373001 | 69.139 | 418 | 102 | 8 | 13 | 416 | 1 | 405 | 0.0 | 545 |
| Msa1295790 | MtrunA17_Chr5g0404321 | 56.501 | 423 | 151 | 11 | 13 | 416 | 1 | 409 | 4.34e-152 | 437 |
| Msa1295790 | MtrunA17_Chr8g0373331 | 55.370 | 419 | 105 | 8 | 13 | 418 | 1 | 350 | 6.66e-139 | 401 |
| Msa1295790 | MtrunA17_Chr1g0155301 | 45.205 | 438 | 183 | 14 | 13 | 416 | 1 | 415 | 1.28e-108 | 326 |
| Msa1295790 | MtrunA17_Chr8g0373351 | 46.891 | 386 | 89 | 10 | 44 | 415 | 3 | 286 | 1.09e-92 | 281 |
| Msa1295790 | MtrunA17_Chr2g0286441 | 42.520 | 381 | 176 | 13 | 53 | 416 | 32 | 386 | 2.48e-86 | 268 |
| Msa1295790 | MtrunA17_Chr1g0201891 | 40.961 | 437 | 200 | 15 | 11 | 416 | 15 | 424 | 5.27e-86 | 268 |
| Msa1295790 | MtrunA17_Chr2g0278511 | 40.868 | 438 | 195 | 17 | 11 | 416 | 15 | 420 | 4.90e-85 | 266 |
| Msa1295790 | MtrunA17_Chr1g0196071 | 39.302 | 430 | 200 | 18 | 13 | 416 | 1 | 395 | 1.31e-77 | 246 |
| Msa1295790 | MtrunA17_Chr2g0315641 | 40.483 | 373 | 170 | 10 | 53 | 416 | 35 | 364 | 6.34e-75 | 238 |
| Msa1295790 | MtrunA17_Chr2g0315651 | 36.675 | 379 | 187 | 10 | 48 | 416 | 25 | 360 | 6.47e-65 | 212 |
| Msa1295790 | MtrunA17_Chr8g0373341 | 57.143 | 217 | 62 | 5 | 13 | 218 | 1 | 197 | 2.98e-60 | 198 |
| Msa1295790 | MtrunA17_Chr8g0373341 | 48.031 | 127 | 57 | 3 | 293 | 413 | 197 | 320 | 1.20e-22 | 97.8 |
| Msa1295790 | MtrunA17_Chr1g0156151 | 42.544 | 228 | 108 | 5 | 13 | 228 | 1 | 217 | 5.68e-49 | 166 |
| Msa1295790 | MtrunA17_Chr3g0091401 | 48.780 | 82 | 39 | 1 | 104 | 185 | 10 | 88 | 5.43e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295790 | AT2G18280.2 | 47.002 | 417 | 177 | 16 | 13 | 416 | 1 | 386 | 7.70e-109 | 326 |
| Msa1295790 | AT2G18280.1 | 47.002 | 417 | 177 | 16 | 13 | 416 | 1 | 386 | 7.70e-109 | 326 |
| Msa1295790 | AT1G47270.3 | 44.737 | 380 | 159 | 15 | 53 | 416 | 37 | 381 | 3.99e-90 | 278 |
| Msa1295790 | AT1G47270.2 | 44.737 | 380 | 159 | 15 | 53 | 416 | 61 | 405 | 4.30e-90 | 279 |
| Msa1295790 | AT1G47270.1 | 44.737 | 380 | 159 | 15 | 53 | 416 | 62 | 406 | 6.05e-90 | 278 |
| Msa1295790 | AT1G25280.1 | 42.105 | 399 | 180 | 14 | 55 | 416 | 54 | 438 | 5.38e-85 | 267 |
| Msa1295790 | AT2G47900.2 | 38.863 | 422 | 217 | 14 | 13 | 416 | 1 | 399 | 3.92e-83 | 261 |
| Msa1295790 | AT2G47900.1 | 38.863 | 422 | 217 | 14 | 13 | 416 | 1 | 399 | 3.92e-83 | 261 |
| Msa1295790 | AT1G76900.2 | 39.565 | 460 | 208 | 17 | 6 | 416 | 10 | 448 | 1.29e-82 | 261 |
| Msa1295790 | AT1G76900.1 | 39.565 | 460 | 208 | 17 | 6 | 416 | 10 | 448 | 1.29e-82 | 261 |
| Msa1295790 | AT1G76900.3 | 39.565 | 460 | 208 | 17 | 6 | 416 | 10 | 448 | 1.29e-82 | 261 |
| Msa1295790 | AT2G47900.3 | 38.771 | 423 | 217 | 14 | 13 | 416 | 1 | 400 | 1.33e-82 | 259 |
| Msa1295790 | AT1G43640.1 | 37.745 | 408 | 204 | 14 | 40 | 416 | 34 | 422 | 3.70e-75 | 241 |
| Msa1295790 | AT1G53320.1 | 39.344 | 366 | 176 | 8 | 60 | 416 | 44 | 372 | 2.86e-71 | 229 |
| Msa1295790 | AT1G43640.2 | 37.867 | 375 | 184 | 13 | 72 | 416 | 1 | 356 | 5.16e-68 | 220 |
| Msa1295790 | AT3G06380.1 | 38.235 | 374 | 181 | 15 | 60 | 416 | 33 | 373 | 6.29e-67 | 218 |
| Msa1295790 | AT5G18680.1 | 38.522 | 379 | 184 | 17 | 56 | 416 | 35 | 382 | 9.63e-67 | 218 |
| Msa1295790 | AT5G18680.2 | 37.621 | 311 | 146 | 16 | 123 | 416 | 11 | 290 | 5.53e-45 | 158 |
| Msa1295790 | AT3G06380.2 | 35.806 | 310 | 150 | 14 | 123 | 416 | 5 | 281 | 1.52e-43 | 154 |
| Msa1295790 | AT1G25280.3 | 37.226 | 274 | 125 | 12 | 176 | 416 | 1 | 260 | 3.91e-37 | 136 |
| Msa1295790 | AT1G25280.2 | 37.226 | 274 | 125 | 12 | 176 | 416 | 1 | 260 | 3.91e-37 | 136 |
| Msa1295790 | AT1G61940.2 | 49.438 | 89 | 45 | 0 | 63 | 151 | 1 | 89 | 2.07e-25 | 104 |
| Msa1295790 | AT1G61940.1 | 50.820 | 61 | 30 | 0 | 63 | 123 | 1 | 61 | 4.68e-15 | 75.1 |
Find 93 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACCTGCTTCACTGAAAT+AGG | 0.231730 | 8_3:+53994914 | None:intergenic |
| TCTACCACCTGAATTGCTTT+TGG | 0.262620 | 8_3:-53995080 | Msa1295790:CDS |
| CTATATGCTGGAACTCTTCT+AGG | 0.279812 | 8_3:+53994096 | None:intergenic |
| ATCCGATCCAGTGCTTTATT+AGG | 0.307753 | 8_3:-53994787 | Msa1295790:CDS |
| GCCCATTGTCCCTGTTGAAC+AGG | 0.324475 | 8_3:+53995106 | None:intergenic |
| CCCTGTTGAACAGGTTCAAT+TGG | 0.325401 | 8_3:+53995115 | None:intergenic |
| GATTGAACTGCAGCATTATC+TGG | 0.330974 | 8_3:+53994162 | None:intergenic |
| ATTATATCCAAAAGCAATTC+AGG | 0.336455 | 8_3:+53995073 | None:intergenic |
| TCCAATTGAACCTGTTCAAC+AGG | 0.342545 | 8_3:-53995116 | Msa1295790:CDS |
| TTTACCAACAAATTTGTTGC+TGG | 0.348268 | 8_3:+53994338 | None:intergenic |
| AGTGCTGGTGAACGAGAAAA+AGG | 0.350410 | 8_3:+53993922 | None:intergenic |
| CCATGGTATGAATCTTTCAT+TGG | 0.357531 | 8_3:+53993886 | None:intergenic |
| GTCAAATTCCCACGTTGCTC+TGG | 0.365897 | 8_3:-53995146 | Msa1295790:CDS |
| ATAGAGCTTTGACTCAGTTC+TGG | 0.369854 | 8_3:+53993847 | None:intergenic |
| CAAGCCAGCAACAAATTTGT+TGG | 0.370996 | 8_3:-53994342 | Msa1295790:CDS |
| ATTCCTGTTGTACTTAGGCT+TGG | 0.405477 | 8_3:-53994744 | Msa1295790:CDS |
| ACCTGTTCAACAGGGACAAT+GGG | 0.420041 | 8_3:-53995107 | Msa1295790:CDS |
| TGATCAACCGATCCAGTGTC+GGG | 0.421360 | 8_3:-53993785 | Msa1295790:CDS |
| ATCTGTCTCATAATGTTTCA+CGG | 0.424549 | 8_3:-53993705 | Msa1295790:CDS |
| GTGCTTCAGTATGTAAATCA+TGG | 0.436410 | 8_3:-53994994 | Msa1295790:CDS |
| ATTTCCTATTTCAGTGAAGC+AGG | 0.455183 | 8_3:-53994918 | Msa1295790:intron |
| CCAGCATATAGCCATCTTGT+TGG | 0.457472 | 8_3:-53994084 | Msa1295790:CDS |
| GCTCCAAGCCTAAGTACAAC+AGG | 0.472048 | 8_3:+53994741 | None:intergenic |
| AGCTAAAGAGGGTAATCTTA+CGG | 0.472647 | 8_3:-53993678 | Msa1295790:CDS |
| TCTACATTCCTGTTGTACTT+AGG | 0.472892 | 8_3:-53994749 | Msa1295790:CDS |
| ATGATGCAGTTGATCTTTCG+TGG | 0.477066 | 8_3:+53994024 | None:intergenic |
| TTGAAAAGAGTGAGACATCT+TGG | 0.483464 | 8_3:-53995042 | Msa1295790:CDS |
| TGTTGGCACCGTTTCCTATG+AGG | 0.484236 | 8_3:-53994067 | Msa1295790:CDS |
| TGTTCATCCTAATAAAGCAC+TGG | 0.484775 | 8_3:+53994780 | None:intergenic |
| TTTCACGGGCGGAGCTAAAG+AGG | 0.499217 | 8_3:-53993690 | Msa1295790:CDS |
| CCCGTCTCAGCTCTTTATGA+AGG | 0.499502 | 8_3:-53993991 | Msa1295790:CDS |
| GATCGGATAATCACAGGGAC+CGG | 0.502784 | 8_3:+53994802 | None:intergenic |
| AATGACAGTGATCACCTCAT+AGG | 0.505003 | 8_3:+53994053 | None:intergenic |
| TCAAGCAGATGGCAAAGGCT+TGG | 0.517708 | 8_3:+53993596 | None:intergenic |
| CGGAGCATCGTCCCCGACAC+TGG | 0.518782 | 8_3:+53993773 | None:intergenic |
| GCAGATGGCAAAGGCTTGGA+AGG | 0.525320 | 8_3:+53993600 | None:intergenic |
| AGACGGTGATCATAAATGTA+TGG | 0.526248 | 8_3:+53993561 | None:intergenic |
| CCAACAAGATGGCTATATGC+TGG | 0.537984 | 8_3:+53994084 | None:intergenic |
| AAGCTTAGGCCGAAAACTCA+AGG | 0.540506 | 8_3:-53995218 | Msa1295790:CDS |
| AATATTGGAGGTAACGATGT+TGG | 0.541161 | 8_3:+53993952 | None:intergenic |
| AACCTGTTCAACAGGGACAA+TGG | 0.555979 | 8_3:-53995108 | Msa1295790:CDS |
| CCGTCTCAGCTCTTTATGAA+GGG | 0.557348 | 8_3:-53993990 | Msa1295790:CDS |
| TTAGAATTCAATATCCCGCT+TGG | 0.557985 | 8_3:+53994129 | None:intergenic |
| TCTATAAAGAACTTTCAACT+TGG | 0.558764 | 8_3:-53993739 | Msa1295790:CDS |
| TCTGTCTCATAATGTTTCAC+GGG | 0.563535 | 8_3:-53993704 | Msa1295790:CDS |
| TTCATACCATGGAAGCCTAT+CGG | 0.564608 | 8_3:-53993875 | Msa1295790:CDS |
| CCCTTCATAAAGAGCTGAGA+CGG | 0.565562 | 8_3:+53993990 | None:intergenic |
| GCACTGGATCGGATAATCAC+AGG | 0.569532 | 8_3:+53994796 | None:intergenic |
| AATCAAATTGTCGACCAAGC+GGG | 0.569918 | 8_3:-53994143 | Msa1295790:CDS |
| AGTGATCACCTCATAGGAAA+CGG | 0.575348 | 8_3:+53994059 | None:intergenic |
| TTGATCAACCGATCCAGTGT+CGG | 0.575709 | 8_3:-53993786 | Msa1295790:CDS |
| AAGATAACAACAGCACGTGC+AGG | 0.577549 | 8_3:+53995019 | None:intergenic |
| TCAGTTCTGGTAGCTCCGAT+AGG | 0.578337 | 8_3:+53993860 | None:intergenic |
| AGCTTAGGCCGAAAACTCAA+GGG | 0.579783 | 8_3:-53995217 | Msa1295790:CDS |
| CCAATGAAAGATTCATACCA+TGG | 0.582725 | 8_3:-53993886 | Msa1295790:CDS |
| TCTCATTGACGTCAAGCAGA+TGG | 0.583186 | 8_3:+53993585 | None:intergenic |
| ATCCTAATAAAGCACTGGAT+CGG | 0.584659 | 8_3:+53994785 | None:intergenic |
| CCTTCATAAAGAGCTGAGAC+GGG | 0.585813 | 8_3:+53993991 | None:intergenic |
| AGGAAACGGTGCCAACAAGA+TGG | 0.588598 | 8_3:+53994073 | None:intergenic |
| ATCGGATAATCACAGGGACC+GGG | 0.590150 | 8_3:+53994803 | None:intergenic |
| ACTGTCGTATATAGAGAACT+TGG | 0.591158 | 8_3:+53994191 | None:intergenic |
| GTAGCTCCGATAGGCTTCCA+TGG | 0.591182 | 8_3:+53993869 | None:intergenic |
| GTGATCCTTCCACATTGTTG+AGG | 0.591561 | 8_3:+53994941 | None:intergenic |
| TGAGCAAGCATATGCTCTGT+CGG | 0.594611 | 8_3:-53995168 | Msa1295790:CDS |
| AGAGATGTTTATGAGTGTCA+AGG | 0.596164 | 8_3:+53993819 | None:intergenic |
| CATCGTCCCCGACACTGGAT+CGG | 0.599982 | 8_3:+53993778 | None:intergenic |
| GGAGGTAACGATGTTGGAGT+CGG | 0.604172 | 8_3:+53993958 | None:intergenic |
| TGACGTCAAGCAGATGGCAA+AGG | 0.606195 | 8_3:+53993591 | None:intergenic |
| AGACTCCTCAACAATGTGGA+AGG | 0.611801 | 8_3:-53994946 | Msa1295790:CDS |
| CGTCTCAGCTCTTTATGAAG+GGG | 0.613180 | 8_3:-53993989 | Msa1295790:CDS |
| GAGATGTTTATGAGTGTCAA+GGG | 0.619622 | 8_3:+53993820 | None:intergenic |
| GTCTCATAATGTTTCACGGG+CGG | 0.621282 | 8_3:-53993701 | Msa1295790:CDS |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.622272 | 8_3:+53993610 | None:intergenic |
| CACTGGATCGGATAATCACA+GGG | 0.628720 | 8_3:+53994797 | None:intergenic |
| GTCTCAGCTCTTTATGAAGG+GGG | 0.630906 | 8_3:-53993988 | Msa1295790:CDS |
| AAAGGTATATCAAATATTGG+AGG | 0.636262 | 8_3:+53993940 | None:intergenic |
| AACATGTCATCGAAAAGCTT+AGG | 0.643710 | 8_3:-53995232 | Msa1295790:CDS |
| TTCACGGGCGGAGCTAAAGA+GGG | 0.644674 | 8_3:-53993689 | Msa1295790:CDS |
| CAATCAAATTGTCGACCAAG+CGG | 0.651811 | 8_3:-53994144 | Msa1295790:CDS |
| CCAATTGAACCTGTTCAACA+GGG | 0.653010 | 8_3:-53995115 | Msa1295790:CDS |
| GATCAACCGATCCAGTGTCG+GGG | 0.678042 | 8_3:-53993784 | Msa1295790:CDS |
| AGTTACATCCAGAGCAACGT+GGG | 0.678793 | 8_3:+53995138 | None:intergenic |
| GCTTAGGCCGAAAACTCAAG+GGG | 0.680074 | 8_3:-53995216 | Msa1295790:CDS |
| GTCAAGACTCCTCAACAATG+TGG | 0.680111 | 8_3:-53994950 | Msa1295790:CDS |
| ATATCCAAAAGCAATTCAGG+TGG | 0.697831 | 8_3:+53995076 | None:intergenic |
| AGTCTTGACGATCTCTAACG+TGG | 0.698293 | 8_3:+53994964 | None:intergenic |
| ATTATGAGACAGATGAACAG+AGG | 0.698328 | 8_3:+53993714 | None:intergenic |
| TGAACTGCAGCATTATCTGG+TGG | 0.700796 | 8_3:+53994165 | None:intergenic |
| GAGTTACATCCAGAGCAACG+TGG | 0.703782 | 8_3:+53995137 | None:intergenic |
| CTTCAGTATGTAAATCATGG+AGG | 0.710846 | 8_3:-53994991 | Msa1295790:CDS |
| GTGTCGGGGACGATGCTCCG+CGG | 0.711835 | 8_3:-53993770 | Msa1295790:CDS |
| CTTTATAGATGCCTCCACCG+CGG | 0.713423 | 8_3:+53993753 | None:intergenic |
| CTTGACGATCTCTAACGTGG+CGG | 0.741325 | 8_3:+53994967 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTACCCTTTTATTCTAT+TGG | - | chr8_3:53994550-53994569 | Msa1295790:intron | 20.0% |
| !!! | TTGATTTTTATACATATGCT+AGG | - | chr8_3:53994605-53994624 | Msa1295790:intron | 20.0% |
| !!! | GAAAAAGGTATATCAAATAT+TGG | + | chr8_3:53994901-53994920 | None:intergenic | 20.0% |
| !!! | TATTTACCCTTTTATTCTAT+TGG | - | chr8_3:53994550-53994569 | Msa1295790:intron | 20.0% |
| !!! | TTGATTTTTATACATATGCT+AGG | - | chr8_3:53994605-53994624 | Msa1295790:intron | 20.0% |
| !!! | GAAAAAGGTATATCAAATAT+TGG | + | chr8_3:53994901-53994920 | None:intergenic | 20.0% |
| ! | ATTATATCCAAAAGCAATTC+AGG | + | chr8_3:53993765-53993784 | None:intergenic | 25.0% |
| ! | AGAGAACATAAAAAACATGA+GGG | + | chr8_3:53993991-53994010 | None:intergenic | 25.0% |
| ! | AAGAGAACATAAAAAACATG+AGG | + | chr8_3:53993992-53994011 | None:intergenic | 25.0% |
| !! | ACTTACTTGCTCTAAATTTA+TGG | - | chr8_3:53994241-53994260 | Msa1295790:CDS | 25.0% |
| !! | CTTACTTGCTCTAAATTTAT+GGG | - | chr8_3:53994242-53994261 | Msa1295790:CDS | 25.0% |
| ! | ATTCATTGTCATTATGATTG+TGG | - | chr8_3:53994289-53994308 | Msa1295790:intron | 25.0% |
| !!! | AAGCTAGATTGTTTTTGTTT+TGG | - | chr8_3:53994367-53994386 | Msa1295790:CDS | 25.0% |
| !!! | ACAAATTTGTTGGTAAAGTA+AGG | - | chr8_3:53994503-53994522 | Msa1295790:intron | 25.0% |
| ! | GAAAAGCCAATAGAATAAAA+GGG | + | chr8_3:53994559-53994578 | None:intergenic | 25.0% |
| ! | TGAAAAGCCAATAGAATAAA+AGG | + | chr8_3:53994560-53994579 | None:intergenic | 25.0% |
| !! | AAAGGTATATCAAATATTGG+AGG | + | chr8_3:53994898-53994917 | None:intergenic | 25.0% |
| ! | TCTATAAAGAACTTTCAACT+TGG | - | chr8_3:53995096-53995115 | Msa1295790:CDS | 25.0% |
| ! | TGAAAAAGATCTATTCATCA+TGG | - | chr8_3:53995191-53995210 | Msa1295790:CDS | 25.0% |
| ! | ATTATATCCAAAAGCAATTC+AGG | + | chr8_3:53993765-53993784 | None:intergenic | 25.0% |
| ! | AGAGAACATAAAAAACATGA+GGG | + | chr8_3:53993991-53994010 | None:intergenic | 25.0% |
| ! | AAGAGAACATAAAAAACATG+AGG | + | chr8_3:53993992-53994011 | None:intergenic | 25.0% |
| !! | ACTTACTTGCTCTAAATTTA+TGG | - | chr8_3:53994241-53994260 | Msa1295790:CDS | 25.0% |
| !! | CTTACTTGCTCTAAATTTAT+GGG | - | chr8_3:53994242-53994261 | Msa1295790:CDS | 25.0% |
| ! | ATTCATTGTCATTATGATTG+TGG | - | chr8_3:53994289-53994308 | Msa1295790:intron | 25.0% |
| !!! | AAGCTAGATTGTTTTTGTTT+TGG | - | chr8_3:53994367-53994386 | Msa1295790:CDS | 25.0% |
| !!! | ACAAATTTGTTGGTAAAGTA+AGG | - | chr8_3:53994503-53994522 | Msa1295790:intron | 25.0% |
| ! | GAAAAGCCAATAGAATAAAA+GGG | + | chr8_3:53994559-53994578 | None:intergenic | 25.0% |
| ! | TGAAAAGCCAATAGAATAAA+AGG | + | chr8_3:53994560-53994579 | None:intergenic | 25.0% |
| !! | AAAGGTATATCAAATATTGG+AGG | + | chr8_3:53994898-53994917 | None:intergenic | 25.0% |
| ! | TCTATAAAGAACTTTCAACT+TGG | - | chr8_3:53995096-53995115 | Msa1295790:CDS | 25.0% |
| ! | TGAAAAAGATCTATTCATCA+TGG | - | chr8_3:53995191-53995210 | Msa1295790:CDS | 25.0% |
| ! | TTTTTATCCCCTTGAGTTTT+CGG | + | chr8_3:53993629-53993648 | None:intergenic | 30.0% |
| AAACTCAAGGGGATAAAAAA+TGG | - | chr8_3:53993630-53993649 | Msa1295790:CDS | 30.0% | |
| AAGGGGATAAAAAATGGAAT+AGG | - | chr8_3:53993636-53993655 | Msa1295790:CDS | 30.0% | |
| CATGAGGGAAAAGAATAATT+CGG | + | chr8_3:53993976-53993995 | None:intergenic | 30.0% | |
| TTCTCTTTCCTTTATGTGTA+TGG | - | chr8_3:53994005-53994024 | Msa1295790:CDS | 30.0% | |
| TCAGCAATGAAATACTTACA+TGG | + | chr8_3:53994119-53994138 | None:intergenic | 30.0% | |
| CATTGTCTTAGAAAAAGAGA+TGG | + | chr8_3:53994148-53994167 | None:intergenic | 30.0% | |
| !! | TTTACCAACAAATTTGTTGC+TGG | + | chr8_3:53994500-53994519 | None:intergenic | 30.0% |
| ATCTGTCTCATAATGTTTCA+CGG | - | chr8_3:53995130-53995149 | Msa1295790:CDS | 30.0% | |
| ! | TTTTTATCCCCTTGAGTTTT+CGG | + | chr8_3:53993629-53993648 | None:intergenic | 30.0% |
| AAACTCAAGGGGATAAAAAA+TGG | - | chr8_3:53993630-53993649 | Msa1295790:CDS | 30.0% | |
| AAGGGGATAAAAAATGGAAT+AGG | - | chr8_3:53993636-53993655 | Msa1295790:CDS | 30.0% | |
| CATGAGGGAAAAGAATAATT+CGG | + | chr8_3:53993976-53993995 | None:intergenic | 30.0% | |
| TTCTCTTTCCTTTATGTGTA+TGG | - | chr8_3:53994005-53994024 | Msa1295790:CDS | 30.0% | |
| TCAGCAATGAAATACTTACA+TGG | + | chr8_3:53994119-53994138 | None:intergenic | 30.0% | |
| CATTGTCTTAGAAAAAGAGA+TGG | + | chr8_3:53994148-53994167 | None:intergenic | 30.0% | |
| !! | TTTACCAACAAATTTGTTGC+TGG | + | chr8_3:53994500-53994519 | None:intergenic | 30.0% |
| ATCTGTCTCATAATGTTTCA+CGG | - | chr8_3:53995130-53995149 | Msa1295790:CDS | 30.0% | |
| AACATGTCATCGAAAAGCTT+AGG | - | chr8_3:53993603-53993622 | Msa1295790:CDS | 35.0% | |
| ATATCCAAAAGCAATTCAGG+TGG | + | chr8_3:53993762-53993781 | None:intergenic | 35.0% | |
| ! | TGCTTTTGGATATAATCCGA+AGG | - | chr8_3:53993769-53993788 | Msa1295790:CDS | 35.0% |
| ! | GCTTTTGGATATAATCCGAA+GGG | - | chr8_3:53993770-53993789 | Msa1295790:CDS | 35.0% |
| TTGAAAAGAGTGAGACATCT+TGG | - | chr8_3:53993793-53993812 | Msa1295790:CDS | 35.0% | |
| GTGCTTCAGTATGTAAATCA+TGG | - | chr8_3:53993841-53993860 | Msa1295790:CDS | 35.0% | |
| CTTCAGTATGTAAATCATGG+AGG | - | chr8_3:53993844-53993863 | Msa1295790:CDS | 35.0% | |
| ATTTCCTATTTCAGTGAAGC+AGG | - | chr8_3:53993917-53993936 | Msa1295790:CDS | 35.0% | |
| ATTACCTGCTTCACTGAAAT+AGG | + | chr8_3:53993924-53993943 | None:intergenic | 35.0% | |
| CAATTATTTCACCCACTTTC+TGG | - | chr8_3:53993944-53993963 | Msa1295790:CDS | 35.0% | |
| !! | ATCCTAATAAAGCACTGGAT+CGG | + | chr8_3:53994053-53994072 | None:intergenic | 35.0% |
| TGTTCATCCTAATAAAGCAC+TGG | + | chr8_3:53994058-53994077 | None:intergenic | 35.0% | |
| TCTACATTCCTGTTGTACTT+AGG | - | chr8_3:53994086-53994105 | Msa1295790:CDS | 35.0% | |
| TAGCTGCCAAAAAGATAAGA+AGG | - | chr8_3:53994431-53994450 | Msa1295790:CDS | 35.0% | |
| TGCCAAAAAGATAAGAAGGT+CGG | - | chr8_3:53994435-53994454 | Msa1295790:intron | 35.0% | |
| ! | TTCCGACCTTCTTATCTTTT+TGG | + | chr8_3:53994440-53994459 | None:intergenic | 35.0% |
| TCAAGTCGTGAAGACTATAA+GGG | + | chr8_3:53994589-53994608 | None:intergenic | 35.0% | |
| ATCAAGTCGTGAAGACTATA+AGG | + | chr8_3:53994590-53994609 | None:intergenic | 35.0% | |
| ! | CATATGCTAGGTCCAATTTT+TGG | - | chr8_3:53994617-53994636 | Msa1295790:intron | 35.0% |
| ACTGTCGTATATAGAGAACT+TGG | + | chr8_3:53994647-53994666 | None:intergenic | 35.0% | |
| TTAGAATTCAATATCCCGCT+TGG | + | chr8_3:53994709-53994728 | None:intergenic | 35.0% | |
| AATATTGGAGGTAACGATGT+TGG | + | chr8_3:53994886-53994905 | None:intergenic | 35.0% | |
| !!! | GGACTTTTTTCTTTAAGTGC+TGG | + | chr8_3:53994931-53994950 | None:intergenic | 35.0% |
| CCATGGTATGAATCTTTCAT+TGG | + | chr8_3:53994952-53994971 | None:intergenic | 35.0% | |
| CCAATGAAAGATTCATACCA+TGG | - | chr8_3:53994949-53994968 | Msa1295790:CDS | 35.0% | |
| GAGATGTTTATGAGTGTCAA+GGG | + | chr8_3:53995018-53995037 | None:intergenic | 35.0% | |
| AGAGATGTTTATGAGTGTCA+AGG | + | chr8_3:53995019-53995038 | None:intergenic | 35.0% | |
| ATTATGAGACAGATGAACAG+AGG | + | chr8_3:53995124-53995143 | None:intergenic | 35.0% | |
| TCTGTCTCATAATGTTTCAC+GGG | - | chr8_3:53995131-53995150 | Msa1295790:CDS | 35.0% | |
| AGCTAAAGAGGGTAATCTTA+CGG | - | chr8_3:53995157-53995176 | Msa1295790:CDS | 35.0% | |
| AACATGTCATCGAAAAGCTT+AGG | - | chr8_3:53993603-53993622 | Msa1295790:CDS | 35.0% | |
| ATATCCAAAAGCAATTCAGG+TGG | + | chr8_3:53993762-53993781 | None:intergenic | 35.0% | |
| ! | TGCTTTTGGATATAATCCGA+AGG | - | chr8_3:53993769-53993788 | Msa1295790:CDS | 35.0% |
| ! | GCTTTTGGATATAATCCGAA+GGG | - | chr8_3:53993770-53993789 | Msa1295790:CDS | 35.0% |
| TTGAAAAGAGTGAGACATCT+TGG | - | chr8_3:53993793-53993812 | Msa1295790:CDS | 35.0% | |
| GTGCTTCAGTATGTAAATCA+TGG | - | chr8_3:53993841-53993860 | Msa1295790:CDS | 35.0% | |
| CTTCAGTATGTAAATCATGG+AGG | - | chr8_3:53993844-53993863 | Msa1295790:CDS | 35.0% | |
| ATTTCCTATTTCAGTGAAGC+AGG | - | chr8_3:53993917-53993936 | Msa1295790:CDS | 35.0% | |
| ATTACCTGCTTCACTGAAAT+AGG | + | chr8_3:53993924-53993943 | None:intergenic | 35.0% | |
| CAATTATTTCACCCACTTTC+TGG | - | chr8_3:53993944-53993963 | Msa1295790:CDS | 35.0% | |
| !! | ATCCTAATAAAGCACTGGAT+CGG | + | chr8_3:53994053-53994072 | None:intergenic | 35.0% |
| TGTTCATCCTAATAAAGCAC+TGG | + | chr8_3:53994058-53994077 | None:intergenic | 35.0% | |
| TCTACATTCCTGTTGTACTT+AGG | - | chr8_3:53994086-53994105 | Msa1295790:CDS | 35.0% | |
| TAGCTGCCAAAAAGATAAGA+AGG | - | chr8_3:53994431-53994450 | Msa1295790:CDS | 35.0% | |
| TGCCAAAAAGATAAGAAGGT+CGG | - | chr8_3:53994435-53994454 | Msa1295790:intron | 35.0% | |
| ! | TTCCGACCTTCTTATCTTTT+TGG | + | chr8_3:53994440-53994459 | None:intergenic | 35.0% |
| TCAAGTCGTGAAGACTATAA+GGG | + | chr8_3:53994589-53994608 | None:intergenic | 35.0% | |
| ATCAAGTCGTGAAGACTATA+AGG | + | chr8_3:53994590-53994609 | None:intergenic | 35.0% | |
| ! | CATATGCTAGGTCCAATTTT+TGG | - | chr8_3:53994617-53994636 | Msa1295790:intron | 35.0% |
| ACTGTCGTATATAGAGAACT+TGG | + | chr8_3:53994647-53994666 | None:intergenic | 35.0% | |
| TTAGAATTCAATATCCCGCT+TGG | + | chr8_3:53994709-53994728 | None:intergenic | 35.0% | |
| AATATTGGAGGTAACGATGT+TGG | + | chr8_3:53994886-53994905 | None:intergenic | 35.0% | |
| !!! | GGACTTTTTTCTTTAAGTGC+TGG | + | chr8_3:53994931-53994950 | None:intergenic | 35.0% |
| CCATGGTATGAATCTTTCAT+TGG | + | chr8_3:53994952-53994971 | None:intergenic | 35.0% | |
| CCAATGAAAGATTCATACCA+TGG | - | chr8_3:53994949-53994968 | Msa1295790:CDS | 35.0% | |
| GAGATGTTTATGAGTGTCAA+GGG | + | chr8_3:53995018-53995037 | None:intergenic | 35.0% | |
| AGAGATGTTTATGAGTGTCA+AGG | + | chr8_3:53995019-53995038 | None:intergenic | 35.0% | |
| ATTATGAGACAGATGAACAG+AGG | + | chr8_3:53995124-53995143 | None:intergenic | 35.0% | |
| TCTGTCTCATAATGTTTCAC+GGG | - | chr8_3:53995131-53995150 | Msa1295790:CDS | 35.0% | |
| AGCTAAAGAGGGTAATCTTA+CGG | - | chr8_3:53995157-53995176 | Msa1295790:CDS | 35.0% | |
| !! | GGTGCAGTTTTATGTTGCAA+CGG | - | chr8_3:53993572-53993591 | Msa1295790:CDS | 40.0% |
| ! | TTTTATGTTGCAACGGAGTG+TGG | - | chr8_3:53993579-53993598 | Msa1295790:CDS | 40.0% |
| TCCAATTGAACCTGTTCAAC+AGG | - | chr8_3:53993719-53993738 | Msa1295790:CDS | 40.0% | |
| CCAATTGAACCTGTTCAACA+GGG | - | chr8_3:53993720-53993739 | Msa1295790:CDS | 40.0% | |
| ! | TCTACCACCTGAATTGCTTT+TGG | - | chr8_3:53993755-53993774 | Msa1295790:CDS | 40.0% |
| ! | TCTCACTCTTTTCAACCCTT+CGG | + | chr8_3:53993788-53993807 | None:intergenic | 40.0% |
| ! | TTCGGATTAGACCAGAAAGT+GGG | + | chr8_3:53993958-53993977 | None:intergenic | 40.0% |
| ! | ATTCGGATTAGACCAGAAAG+TGG | + | chr8_3:53993959-53993978 | None:intergenic | 40.0% |
| CTTTATGTGTATGGATAGCC+CGG | - | chr8_3:53994014-53994033 | Msa1295790:CDS | 40.0% | |
| ! | ATCCGATCCAGTGCTTTATT+AGG | - | chr8_3:53994048-53994067 | Msa1295790:CDS | 40.0% |
| ATTCCTGTTGTACTTAGGCT+TGG | - | chr8_3:53994091-53994110 | Msa1295790:CDS | 40.0% | |
| AGAAAAATCGTCTGCTGCTA+AGG | + | chr8_3:53994473-53994492 | None:intergenic | 40.0% | |
| CAAGCCAGCAACAAATTTGT+TGG | - | chr8_3:53994493-53994512 | Msa1295790:intron | 40.0% | |
| CAAGTCGTGAAGACTATAAG+GGG | + | chr8_3:53994588-53994607 | None:intergenic | 40.0% | |
| !! | GAACTTGGTGCACCAAAAAT+TGG | + | chr8_3:53994632-53994651 | None:intergenic | 40.0% |
| GATTGAACTGCAGCATTATC+TGG | + | chr8_3:53994676-53994695 | None:intergenic | 40.0% | |
| CAATCAAATTGTCGACCAAG+CGG | - | chr8_3:53994691-53994710 | Msa1295790:intron | 40.0% | |
| AATCAAATTGTCGACCAAGC+GGG | - | chr8_3:53994692-53994711 | Msa1295790:intron | 40.0% | |
| CTATATGCTGGAACTCTTCT+AGG | + | chr8_3:53994742-53994761 | None:intergenic | 40.0% | |
| AGTGATCACCTCATAGGAAA+CGG | + | chr8_3:53994779-53994798 | None:intergenic | 40.0% | |
| AATGACAGTGATCACCTCAT+AGG | + | chr8_3:53994785-53994804 | None:intergenic | 40.0% | |
| ATGATGCAGTTGATCTTTCG+TGG | + | chr8_3:53994814-53994833 | None:intergenic | 40.0% | |
| TTCATACCATGGAAGCCTAT+CGG | - | chr8_3:53994960-53994979 | Msa1295790:CDS | 40.0% | |
| ! | ATAGAGCTTTGACTCAGTTC+TGG | + | chr8_3:53994991-53995010 | None:intergenic | 40.0% |
| !! | GGTGCAGTTTTATGTTGCAA+CGG | - | chr8_3:53993572-53993591 | Msa1295790:CDS | 40.0% |
| ! | TTTTATGTTGCAACGGAGTG+TGG | - | chr8_3:53993579-53993598 | Msa1295790:CDS | 40.0% |
| TCCAATTGAACCTGTTCAAC+AGG | - | chr8_3:53993719-53993738 | Msa1295790:CDS | 40.0% | |
| CCAATTGAACCTGTTCAACA+GGG | - | chr8_3:53993720-53993739 | Msa1295790:CDS | 40.0% | |
| ! | TCTACCACCTGAATTGCTTT+TGG | - | chr8_3:53993755-53993774 | Msa1295790:CDS | 40.0% |
| ! | TCTCACTCTTTTCAACCCTT+CGG | + | chr8_3:53993788-53993807 | None:intergenic | 40.0% |
| ! | TTCGGATTAGACCAGAAAGT+GGG | + | chr8_3:53993958-53993977 | None:intergenic | 40.0% |
| ! | ATTCGGATTAGACCAGAAAG+TGG | + | chr8_3:53993959-53993978 | None:intergenic | 40.0% |
| CTTTATGTGTATGGATAGCC+CGG | - | chr8_3:53994014-53994033 | Msa1295790:CDS | 40.0% | |
| ! | ATCCGATCCAGTGCTTTATT+AGG | - | chr8_3:53994048-53994067 | Msa1295790:CDS | 40.0% |
| ATTCCTGTTGTACTTAGGCT+TGG | - | chr8_3:53994091-53994110 | Msa1295790:CDS | 40.0% | |
| AGAAAAATCGTCTGCTGCTA+AGG | + | chr8_3:53994473-53994492 | None:intergenic | 40.0% | |
| CAAGCCAGCAACAAATTTGT+TGG | - | chr8_3:53994493-53994512 | Msa1295790:intron | 40.0% | |
| CAAGTCGTGAAGACTATAAG+GGG | + | chr8_3:53994588-53994607 | None:intergenic | 40.0% | |
| !! | GAACTTGGTGCACCAAAAAT+TGG | + | chr8_3:53994632-53994651 | None:intergenic | 40.0% |
| GATTGAACTGCAGCATTATC+TGG | + | chr8_3:53994676-53994695 | None:intergenic | 40.0% | |
| CAATCAAATTGTCGACCAAG+CGG | - | chr8_3:53994691-53994710 | Msa1295790:intron | 40.0% | |
| AATCAAATTGTCGACCAAGC+GGG | - | chr8_3:53994692-53994711 | Msa1295790:intron | 40.0% | |
| CTATATGCTGGAACTCTTCT+AGG | + | chr8_3:53994742-53994761 | None:intergenic | 40.0% | |
| AGTGATCACCTCATAGGAAA+CGG | + | chr8_3:53994779-53994798 | None:intergenic | 40.0% | |
| AATGACAGTGATCACCTCAT+AGG | + | chr8_3:53994785-53994804 | None:intergenic | 40.0% | |
| ATGATGCAGTTGATCTTTCG+TGG | + | chr8_3:53994814-53994833 | None:intergenic | 40.0% | |
| TTCATACCATGGAAGCCTAT+CGG | - | chr8_3:53994960-53994979 | Msa1295790:CDS | 40.0% | |
| ! | ATAGAGCTTTGACTCAGTTC+TGG | + | chr8_3:53994991-53995010 | None:intergenic | 40.0% |
| AAGCTTAGGCCGAAAACTCA+AGG | - | chr8_3:53993617-53993636 | Msa1295790:CDS | 45.0% | |
| AGCTTAGGCCGAAAACTCAA+GGG | - | chr8_3:53993618-53993637 | Msa1295790:CDS | 45.0% | |
| TGAGCAAGCATATGCTCTGT+CGG | - | chr8_3:53993667-53993686 | Msa1295790:CDS | 45.0% | |
| AGTTACATCCAGAGCAACGT+GGG | + | chr8_3:53993700-53993719 | None:intergenic | 45.0% | |
| CCCTGTTGAACAGGTTCAAT+TGG | + | chr8_3:53993723-53993742 | None:intergenic | 45.0% | |
| AACCTGTTCAACAGGGACAA+TGG | - | chr8_3:53993727-53993746 | Msa1295790:CDS | 45.0% | |
| ACCTGTTCAACAGGGACAAT+GGG | - | chr8_3:53993728-53993747 | Msa1295790:CDS | 45.0% | |
| AAGATAACAACAGCACGTGC+AGG | + | chr8_3:53993819-53993838 | None:intergenic | 45.0% | |
| AGTCTTGACGATCTCTAACG+TGG | + | chr8_3:53993874-53993893 | None:intergenic | 45.0% | |
| GTCAAGACTCCTCAACAATG+TGG | - | chr8_3:53993885-53993904 | Msa1295790:CDS | 45.0% | |
| AGACTCCTCAACAATGTGGA+AGG | - | chr8_3:53993889-53993908 | Msa1295790:CDS | 45.0% | |
| GTGATCCTTCCACATTGTTG+AGG | + | chr8_3:53993897-53993916 | None:intergenic | 45.0% | |
| CGGGCTATCCATACACATAA+AGG | + | chr8_3:53994016-53994035 | None:intergenic | 45.0% | |
| CACTGGATCGGATAATCACA+GGG | + | chr8_3:53994041-53994060 | None:intergenic | 45.0% | |
| TCGTGAAGACTATAAGGGGT+AGG | + | chr8_3:53994584-53994603 | None:intergenic | 45.0% | |
| TGAACTGCAGCATTATCTGG+TGG | + | chr8_3:53994673-53994692 | None:intergenic | 45.0% | |
| CCAACAAGATGGCTATATGC+TGG | + | chr8_3:53994754-53994773 | None:intergenic | 45.0% | |
| CCAGCATATAGCCATCTTGT+TGG | - | chr8_3:53994751-53994770 | Msa1295790:CDS | 45.0% | |
| CCTTCATAAAGAGCTGAGAC+GGG | + | chr8_3:53994847-53994866 | None:intergenic | 45.0% | |
| CCCTTCATAAAGAGCTGAGA+CGG | + | chr8_3:53994848-53994867 | None:intergenic | 45.0% | |
| CCGTCTCAGCTCTTTATGAA+GGG | - | chr8_3:53994845-53994864 | Msa1295790:intron | 45.0% | |
| CGTCTCAGCTCTTTATGAAG+GGG | - | chr8_3:53994846-53994865 | Msa1295790:intron | 45.0% | |
| GTCTCAGCTCTTTATGAAGG+GGG | - | chr8_3:53994847-53994866 | Msa1295790:intron | 45.0% | |
| !! | AGTGCTGGTGAACGAGAAAA+AGG | + | chr8_3:53994916-53994935 | None:intergenic | 45.0% |
| TTGATCAACCGATCCAGTGT+CGG | - | chr8_3:53995049-53995068 | Msa1295790:CDS | 45.0% | |
| GTCTCATAATGTTTCACGGG+CGG | - | chr8_3:53995134-53995153 | Msa1295790:CDS | 45.0% | |
| TCTCATTGACGTCAAGCAGA+TGG | + | chr8_3:53995253-53995272 | None:intergenic | 45.0% | |
| AAGCTTAGGCCGAAAACTCA+AGG | - | chr8_3:53993617-53993636 | Msa1295790:CDS | 45.0% | |
| AGCTTAGGCCGAAAACTCAA+GGG | - | chr8_3:53993618-53993637 | Msa1295790:CDS | 45.0% | |
| TGAGCAAGCATATGCTCTGT+CGG | - | chr8_3:53993667-53993686 | Msa1295790:CDS | 45.0% | |
| AGTTACATCCAGAGCAACGT+GGG | + | chr8_3:53993700-53993719 | None:intergenic | 45.0% | |
| CCCTGTTGAACAGGTTCAAT+TGG | + | chr8_3:53993723-53993742 | None:intergenic | 45.0% | |
| AACCTGTTCAACAGGGACAA+TGG | - | chr8_3:53993727-53993746 | Msa1295790:CDS | 45.0% | |
| ACCTGTTCAACAGGGACAAT+GGG | - | chr8_3:53993728-53993747 | Msa1295790:CDS | 45.0% | |
| AAGATAACAACAGCACGTGC+AGG | + | chr8_3:53993819-53993838 | None:intergenic | 45.0% | |
| AGTCTTGACGATCTCTAACG+TGG | + | chr8_3:53993874-53993893 | None:intergenic | 45.0% | |
| GTCAAGACTCCTCAACAATG+TGG | - | chr8_3:53993885-53993904 | Msa1295790:CDS | 45.0% | |
| AGACTCCTCAACAATGTGGA+AGG | - | chr8_3:53993889-53993908 | Msa1295790:CDS | 45.0% | |
| GTGATCCTTCCACATTGTTG+AGG | + | chr8_3:53993897-53993916 | None:intergenic | 45.0% | |
| CGGGCTATCCATACACATAA+AGG | + | chr8_3:53994016-53994035 | None:intergenic | 45.0% | |
| CACTGGATCGGATAATCACA+GGG | + | chr8_3:53994041-53994060 | None:intergenic | 45.0% | |
| TCGTGAAGACTATAAGGGGT+AGG | + | chr8_3:53994584-53994603 | None:intergenic | 45.0% | |
| TGAACTGCAGCATTATCTGG+TGG | + | chr8_3:53994673-53994692 | None:intergenic | 45.0% | |
| CCAACAAGATGGCTATATGC+TGG | + | chr8_3:53994754-53994773 | None:intergenic | 45.0% | |
| CCAGCATATAGCCATCTTGT+TGG | - | chr8_3:53994751-53994770 | Msa1295790:CDS | 45.0% | |
| CCTTCATAAAGAGCTGAGAC+GGG | + | chr8_3:53994847-53994866 | None:intergenic | 45.0% | |
| CCCTTCATAAAGAGCTGAGA+CGG | + | chr8_3:53994848-53994867 | None:intergenic | 45.0% | |
| CCGTCTCAGCTCTTTATGAA+GGG | - | chr8_3:53994845-53994864 | Msa1295790:intron | 45.0% | |
| CGTCTCAGCTCTTTATGAAG+GGG | - | chr8_3:53994846-53994865 | Msa1295790:intron | 45.0% | |
| GTCTCAGCTCTTTATGAAGG+GGG | - | chr8_3:53994847-53994866 | Msa1295790:intron | 45.0% | |
| !! | AGTGCTGGTGAACGAGAAAA+AGG | + | chr8_3:53994916-53994935 | None:intergenic | 45.0% |
| TTGATCAACCGATCCAGTGT+CGG | - | chr8_3:53995049-53995068 | Msa1295790:CDS | 45.0% | |
| GTCTCATAATGTTTCACGGG+CGG | - | chr8_3:53995134-53995153 | Msa1295790:CDS | 45.0% | |
| TCTCATTGACGTCAAGCAGA+TGG | + | chr8_3:53995253-53995272 | None:intergenic | 45.0% | |
| GCTTAGGCCGAAAACTCAAG+GGG | - | chr8_3:53993619-53993638 | Msa1295790:CDS | 50.0% | |
| GTCAAATTCCCACGTTGCTC+TGG | - | chr8_3:53993689-53993708 | Msa1295790:CDS | 50.0% | |
| GAGTTACATCCAGAGCAACG+TGG | + | chr8_3:53993701-53993720 | None:intergenic | 50.0% | |
| CTTGACGATCTCTAACGTGG+CGG | + | chr8_3:53993871-53993890 | None:intergenic | 50.0% | |
| ATCGGATAATCACAGGGACC+GGG | + | chr8_3:53994035-53994054 | None:intergenic | 50.0% | |
| GATCGGATAATCACAGGGAC+CGG | + | chr8_3:53994036-53994055 | None:intergenic | 50.0% | |
| GCACTGGATCGGATAATCAC+AGG | + | chr8_3:53994042-53994061 | None:intergenic | 50.0% | |
| GCTCCAAGCCTAAGTACAAC+AGG | + | chr8_3:53994097-53994116 | None:intergenic | 50.0% | |
| ! | AGGAAACGGTGCCAACAAGA+TGG | + | chr8_3:53994765-53994784 | None:intergenic | 50.0% |
| TGTTGGCACCGTTTCCTATG+AGG | - | chr8_3:53994768-53994787 | Msa1295790:CDS | 50.0% | |
| CCCGTCTCAGCTCTTTATGA+AGG | - | chr8_3:53994844-53994863 | Msa1295790:intron | 50.0% | |
| GGAGGTAACGATGTTGGAGT+CGG | + | chr8_3:53994880-53994899 | None:intergenic | 50.0% | |
| ! | TCAGTTCTGGTAGCTCCGAT+AGG | + | chr8_3:53994978-53994997 | None:intergenic | 50.0% |
| TGATCAACCGATCCAGTGTC+GGG | - | chr8_3:53995050-53995069 | Msa1295790:CDS | 50.0% | |
| CTTTATAGATGCCTCCACCG+CGG | + | chr8_3:53995085-53995104 | None:intergenic | 50.0% | |
| TCAAGCAGATGGCAAAGGCT+TGG | + | chr8_3:53995242-53995261 | None:intergenic | 50.0% | |
| TGACGTCAAGCAGATGGCAA+AGG | + | chr8_3:53995247-53995266 | None:intergenic | 50.0% | |
| GCTTAGGCCGAAAACTCAAG+GGG | - | chr8_3:53993619-53993638 | Msa1295790:CDS | 50.0% | |
| GTCAAATTCCCACGTTGCTC+TGG | - | chr8_3:53993689-53993708 | Msa1295790:CDS | 50.0% | |
| GAGTTACATCCAGAGCAACG+TGG | + | chr8_3:53993701-53993720 | None:intergenic | 50.0% | |
| CTTGACGATCTCTAACGTGG+CGG | + | chr8_3:53993871-53993890 | None:intergenic | 50.0% | |
| ATCGGATAATCACAGGGACC+GGG | + | chr8_3:53994035-53994054 | None:intergenic | 50.0% | |
| GATCGGATAATCACAGGGAC+CGG | + | chr8_3:53994036-53994055 | None:intergenic | 50.0% | |
| GCACTGGATCGGATAATCAC+AGG | + | chr8_3:53994042-53994061 | None:intergenic | 50.0% | |
| GCTCCAAGCCTAAGTACAAC+AGG | + | chr8_3:53994097-53994116 | None:intergenic | 50.0% | |
| ! | AGGAAACGGTGCCAACAAGA+TGG | + | chr8_3:53994765-53994784 | None:intergenic | 50.0% |
| TGTTGGCACCGTTTCCTATG+AGG | - | chr8_3:53994768-53994787 | Msa1295790:CDS | 50.0% | |
| CCCGTCTCAGCTCTTTATGA+AGG | - | chr8_3:53994844-53994863 | Msa1295790:intron | 50.0% | |
| GGAGGTAACGATGTTGGAGT+CGG | + | chr8_3:53994880-53994899 | None:intergenic | 50.0% | |
| ! | TCAGTTCTGGTAGCTCCGAT+AGG | + | chr8_3:53994978-53994997 | None:intergenic | 50.0% |
| TGATCAACCGATCCAGTGTC+GGG | - | chr8_3:53995050-53995069 | Msa1295790:CDS | 50.0% | |
| CTTTATAGATGCCTCCACCG+CGG | + | chr8_3:53995085-53995104 | None:intergenic | 50.0% | |
| TCAAGCAGATGGCAAAGGCT+TGG | + | chr8_3:53995242-53995261 | None:intergenic | 50.0% | |
| TGACGTCAAGCAGATGGCAA+AGG | + | chr8_3:53995247-53995266 | None:intergenic | 50.0% | |
| GCCCATTGTCCCTGTTGAAC+AGG | + | chr8_3:53993732-53993751 | None:intergenic | 55.0% | |
| GTAGCTCCGATAGGCTTCCA+TGG | + | chr8_3:53994969-53994988 | None:intergenic | 55.0% | |
| GATCAACCGATCCAGTGTCG+GGG | - | chr8_3:53995051-53995070 | Msa1295790:CDS | 55.0% | |
| TTTCACGGGCGGAGCTAAAG+AGG | - | chr8_3:53995145-53995164 | Msa1295790:CDS | 55.0% | |
| TTCACGGGCGGAGCTAAAGA+GGG | - | chr8_3:53995146-53995165 | Msa1295790:CDS | 55.0% | |
| AAGGCTTGGAAGGCAGAGAG+TGG | + | chr8_3:53995228-53995247 | None:intergenic | 55.0% | |
| GCAGATGGCAAAGGCTTGGA+AGG | + | chr8_3:53995238-53995257 | None:intergenic | 55.0% | |
| GCCCATTGTCCCTGTTGAAC+AGG | + | chr8_3:53993732-53993751 | None:intergenic | 55.0% | |
| GTAGCTCCGATAGGCTTCCA+TGG | + | chr8_3:53994969-53994988 | None:intergenic | 55.0% | |
| GATCAACCGATCCAGTGTCG+GGG | - | chr8_3:53995051-53995070 | Msa1295790:CDS | 55.0% | |
| TTTCACGGGCGGAGCTAAAG+AGG | - | chr8_3:53995145-53995164 | Msa1295790:CDS | 55.0% | |
| TTCACGGGCGGAGCTAAAGA+GGG | - | chr8_3:53995146-53995165 | Msa1295790:CDS | 55.0% | |
| AAGGCTTGGAAGGCAGAGAG+TGG | + | chr8_3:53995228-53995247 | None:intergenic | 55.0% | |
| GCAGATGGCAAAGGCTTGGA+AGG | + | chr8_3:53995238-53995257 | None:intergenic | 55.0% | |
| CATCGTCCCCGACACTGGAT+CGG | + | chr8_3:53995060-53995079 | None:intergenic | 60.0% | |
| CATCGTCCCCGACACTGGAT+CGG | + | chr8_3:53995060-53995079 | None:intergenic | 60.0% | |
| !! | CGGAGCATCGTCCCCGACAC+TGG | + | chr8_3:53995065-53995084 | None:intergenic | 70.0% |
| GTGTCGGGGACGATGCTCCG+CGG | - | chr8_3:53995065-53995084 | Msa1295790:CDS | 70.0% | |
| !! | CGGAGCATCGTCCCCGACAC+TGG | + | chr8_3:53995065-53995084 | None:intergenic | 70.0% |
| GTGTCGGGGACGATGCTCCG+CGG | - | chr8_3:53995065-53995084 | Msa1295790:CDS | 70.0% | |
| TCGGGGACGATGCTCCGCGG+TGG | - | chr8_3:53995068-53995087 | Msa1295790:CDS | 75.0% | |
| GGGACGATGCTCCGCGGTGG+AGG | - | chr8_3:53995071-53995090 | Msa1295790:CDS | 75.0% | |
| TCGGGGACGATGCTCCGCGG+TGG | - | chr8_3:53995068-53995087 | Msa1295790:CDS | 75.0% | |
| GGGACGATGCTCCGCGGTGG+AGG | - | chr8_3:53995071-53995090 | Msa1295790:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53993570 | 53995287 | 53993570 | ID=Msa1295790;Name=Msa1295790 |
| chr8_3 | mRNA | 53993570 | 53995287 | 53993570 | ID=Msa1295790-mRNA-1;Parent=Msa1295790;Name=Msa1295790-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|4|0|421 |
| chr8_3 | exon | 53994919 | 53995287 | 53994919 | ID=Msa1295790-mRNA-1:exon:15609;Parent=Msa1295790-mRNA-1 |
| chr8_3 | exon | 53994738 | 53994825 | 53994738 | ID=Msa1295790-mRNA-1:exon:15608;Parent=Msa1295790-mRNA-1 |
| chr8_3 | exon | 53994338 | 53994453 | 53994338 | ID=Msa1295790-mRNA-1:exon:15607;Parent=Msa1295790-mRNA-1 |
| chr8_3 | exon | 53993570 | 53994262 | 53993570 | ID=Msa1295790-mRNA-1:exon:15606;Parent=Msa1295790-mRNA-1 |
| chr8_3 | CDS | 53994919 | 53995287 | 53994919 | ID=Msa1295790-mRNA-1:cds;Parent=Msa1295790-mRNA-1 |
| chr8_3 | CDS | 53994738 | 53994825 | 53994738 | ID=Msa1295790-mRNA-1:cds;Parent=Msa1295790-mRNA-1 |
| chr8_3 | CDS | 53994338 | 53994453 | 53994338 | ID=Msa1295790-mRNA-1:cds;Parent=Msa1295790-mRNA-1 |
| chr8_3 | CDS | 53993570 | 53994262 | 53993570 | ID=Msa1295790-mRNA-1:cds;Parent=Msa1295790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
