AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1298130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298130 MtrunA17_Chr4g0055611 97.232 542 15 0 1 542 1 542 0.0 1092
Msa1298130 MtrunA17_Chr5g0399781 77.075 253 52 4 1 250 1 250 4.06e-128 374
Msa1298130 MtrunA17_Chr5g0399791 61.826 241 80 2 282 522 6 234 3.82e-94 287
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298130 AT4G17570.3 50.940 532 226 14 1 518 1 511 6.67e-145 427
Msa1298130 AT4G17570.1 50.376 532 225 15 1 518 1 507 5.98e-140 414
Msa1298130 AT4G17570.2 50.000 518 224 14 15 518 27 523 3.96e-132 395
Msa1298130 AT5G47140.1 46.529 533 204 13 1 518 1 467 7.23e-120 362

Find 159 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGATGTCTTGCAGTCTTC+AGG 0.202442 8_3:-58829704 None:intergenic
CCACATGCATTGCATAAAAT+TGG 0.209606 8_3:-58826870 None:intergenic
GATGAACTAGACAATTATTT+TGG 0.224964 8_3:+58831186 Msa1298130:three_prime_UTR
TGAGCAACCAAGCTAGAATT+TGG 0.226392 8_3:-58830700 None:intergenic
GTCCTTCTCGGTCAGTAGTC+TGG 0.257209 8_3:+58827811 Msa1298130:CDS
TGGAATCCTTGATTATATTC+AGG 0.275290 8_3:-58827083 None:intergenic
TATCCTCATCGACAGCCTTT+TGG 0.278578 8_3:-58827103 None:intergenic
AGCTGCTCCTGTTGCAGTCT+TGG 0.279584 8_3:-58828215 None:intergenic
CATTCATCTGAAGAAATAAA+TGG 0.283008 8_3:+58831138 Msa1298130:three_prime_UTR
TAAGAACAAAGAAGTGAAAT+TGG 0.296795 8_3:+58827007 Msa1298130:CDS
CGGGGAGATACTTCAGTAAT+TGG 0.306286 8_3:-58829387 None:intergenic
GTCTTTGATATCTCTTTGTT+TGG 0.309370 8_3:+58829674 Msa1298130:CDS
ACACATCAAGTGTCATGTTT+TGG 0.312360 8_3:-58831222 None:intergenic
AGCTGGAAAACGTAATGATA+TGG 0.322982 8_3:+58830183 Msa1298130:CDS
GCTGCTCCTGTTGCAGTCTT+GGG 0.330451 8_3:-58828214 None:intergenic
TGGCATGAATTTCTCTTCTC+AGG 0.335218 8_3:+58828163 Msa1298130:CDS
TCAGAAAGCTGCGTTCAATT+TGG 0.340455 8_3:+58827164 Msa1298130:CDS
AACAGGATTGCTGTTGTTCA+TGG 0.347627 8_3:-58827926 None:intergenic
TTCAGAAGAAGCAGAGAAAC+AGG 0.359840 8_3:-58827943 None:intergenic
TGCTGGCCCAAGACTGCAAC+AGG 0.360278 8_3:+58828208 Msa1298130:CDS
ATACTGCTAAATTTCCTGAT+AGG 0.379031 8_3:+58829416 Msa1298130:CDS
GACATGGAAGCATGCTTATT+AGG 0.380641 8_3:+58828015 Msa1298130:CDS
AATGAGGCATATTCGTGTTA+TGG 0.381814 8_3:+58828113 Msa1298130:CDS
TAACCAGATTCTAACCTATC+AGG 0.386767 8_3:-58829430 None:intergenic
AAGACTGCAAGACATCTAAA+AGG 0.389266 8_3:+58829708 Msa1298130:CDS
GTTCGATAGCTTTCAATTCA+AGG 0.390519 8_3:+58829613 Msa1298130:CDS
CATTTATTTCTTCAGATGAA+TGG 0.391400 8_3:-58831137 None:intergenic
TCCATAGTACATACTCTTCC+AGG 0.393390 8_3:-58830792 None:intergenic
ACGAATATGCCTCATTCATT+AGG 0.397130 8_3:-58828106 None:intergenic
TTTGATATCTCTTTGTTTGG+AGG 0.399259 8_3:+58829677 Msa1298130:CDS
GATAATGCTTATGCTGCATC+TGG 0.405843 8_3:+58827050 Msa1298130:CDS
ACAAGCAATAGATCAAGTTC+AGG 0.405979 8_3:+58827125 Msa1298130:CDS
TGGTTAATTTAGGTCCTTCT+CGG 0.410225 8_3:+58827799 Msa1298130:intron
CATTGCGAGGAAATGCAAAT+AGG 0.412981 8_3:-58830567 None:intergenic
TAGATGTCTTGCAGTCTTCA+GGG 0.413125 8_3:-58829703 None:intergenic
TTGGTTATAAAGAGTTTAGT+TGG 0.418646 8_3:+58831615 Msa1298130:three_prime_UTR
TTGGCAATCCAAGCTCAATA+AGG 0.423805 8_3:-58830917 None:intergenic
ATTGCATAAAATTGGCTTCT+CGG 0.425605 8_3:-58826862 None:intergenic
CGTTGATGAGAGTTCGGATC+AGG 0.428748 8_3:+58830621 Msa1298130:CDS
AAACTTCGTTGATGAGAGTT+CGG 0.431868 8_3:+58830615 Msa1298130:CDS
GGAATCCTTGATTATATTCA+GGG 0.435974 8_3:-58827082 None:intergenic
TTTCTCTGCTTCTTCTGAAG+AGG 0.445798 8_3:+58827947 Msa1298130:CDS
GCTTCTTTGCCACCAGTGCC+AGG 0.446048 8_3:-58830514 None:intergenic
ACCTGGAAGAGTATGTACTA+TGG 0.448507 8_3:+58830791 Msa1298130:three_prime_UTR
AGAGAGAATGAGAGGAAGGA+AGG 0.449351 8_3:-58825150 None:intergenic
TTGCATAAAATTGGCTTCTC+GGG 0.450813 8_3:-58826861 None:intergenic
CCGATGGTCTCTGTTGAGAT+AGG 0.451064 8_3:+58827993 Msa1298130:CDS
ACTTGCAACCTTATTGAGCT+TGG 0.456245 8_3:+58830909 Msa1298130:three_prime_UTR
GAGCAACCAAGCTAGAATTT+GGG 0.456850 8_3:-58830699 None:intergenic
CAATGGTGGCTTGCACATGC+TGG 0.457641 8_3:+58830585 Msa1298130:CDS
CCCATCCAACTTGCATCCCT+TGG 0.461584 8_3:-58830936 None:intergenic
GTCCTTGAATAATCTTTACT+AGG 0.465381 8_3:+58830764 Msa1298130:exon
CTCTTCTCAGGGAGTTGCAA+AGG 0.470360 8_3:+58828175 Msa1298130:CDS
ACTGATATAAGCCATAAGTT+AGG 0.472108 8_3:+58825444 Msa1298130:five_prime_UTR
AACCTAGTAAAGATTATTCA+AGG 0.476906 8_3:-58830766 None:intergenic
CCTGCTCCCAAATTCTAGCT+TGG 0.478457 8_3:+58830693 Msa1298130:CDS
GAAAGCTGCGTTCAATTTGG+CGG 0.481959 8_3:+58827167 Msa1298130:CDS
CAACAATGAGGAGTCCCAAA+AGG 0.482639 8_3:+58830479 Msa1298130:CDS
TCCTTCTCGGTCAGTAGTCT+GGG 0.482866 8_3:+58827812 Msa1298130:CDS
GGAAGAGAAAAGAACATTGA+AGG 0.484756 8_3:-58825221 None:intergenic
GGTGGCAAAGAAGCTGTAGA+TGG 0.485633 8_3:+58830523 Msa1298130:CDS
GCCAGTGTAATCACTAAGCA+TGG 0.486056 8_3:-58828144 None:intergenic
AGAGAGAAAAGGAGAAGGGA+AGG 0.487756 8_3:-58825185 None:intergenic
AATTAGAGAGATTGATAAGT+GGG 0.487796 8_3:-58825274 None:intergenic
AAGGAGAAGGGAAGGTGCAA+TGG 0.490917 8_3:-58825177 None:intergenic
AAGAGTTTAGTTGGCAAGTG+AGG 0.492655 8_3:+58831624 Msa1298130:three_prime_UTR
TGTGGAAAAGAATTGTTAGA+TGG 0.494479 8_3:-58830661 None:intergenic
ATTATACTCCTTTACATGCT+CGG 0.500610 8_3:+58826925 Msa1298130:CDS
TGGATGAATAGCTTTATGAA+TGG 0.500950 8_3:+58831158 Msa1298130:three_prime_UTR
GAATAGCTTTATGAATGGAT+AGG 0.503442 8_3:+58831163 Msa1298130:three_prime_UTR
CTATTTGCATTTCCTCGCAA+TGG 0.505348 8_3:+58830568 Msa1298130:CDS
TGAGGAAAAGATTGAGACAT+GGG 0.507698 8_3:+58825553 Msa1298130:exon
TCTGATGAATGAGAGAGAAA+AGG 0.511143 8_3:-58825196 None:intergenic
CATAAAATTGGCTTCTCGGG+TGG 0.513655 8_3:-58826858 None:intergenic
TTGAGGATCAGAGAGTTTCA+AGG 0.515344 8_3:+58826964 Msa1298130:CDS
GCCAAGGGATGCAAGTTGGA+TGG 0.515362 8_3:+58830935 Msa1298130:three_prime_UTR
CAGAAAGGTGGAAACAAAGC+TGG 0.517998 8_3:+58830166 Msa1298130:intron
AAAGAGAGAGAATGAGAGGA+AGG 0.520843 8_3:-58825154 None:intergenic
GAATGAGAGAGAAAAGGAGA+AGG 0.521112 8_3:-58825190 None:intergenic
AATAGCTTTATGAATGGATA+GGG 0.521302 8_3:+58831164 Msa1298130:three_prime_UTR
GGCATGAATTTCTCTTCTCA+GGG 0.528773 8_3:+58828164 Msa1298130:CDS
AATTCTAGCTTGGTTGCTCA+AGG 0.529989 8_3:+58830703 Msa1298130:CDS
CGAGTATACTGAGCTACTAC+TGG 0.530369 8_3:-58830731 None:intergenic
CGCAACATTACTTGATGCCA+CGG 0.532105 8_3:-58830215 None:intergenic
GGCACACCACTTTGGCGTAA+CGG 0.532158 8_3:+58826834 Msa1298130:intron
CCAAGGGATGCAAGTTGGAT+GGG 0.536174 8_3:+58830936 Msa1298130:three_prime_UTR
TAAACAATGCCTAATGAATG+AGG 0.536919 8_3:+58828097 Msa1298130:CDS
AATGAGAGAGAAAAGGAGAA+GGG 0.538089 8_3:-58825189 None:intergenic
TTGCAATAGGCACACCACTT+TGG 0.540892 8_3:+58826826 Msa1298130:intron
TTTCAGAAACTTCTCGAGGA+AGG 0.544680 8_3:+58829650 Msa1298130:CDS
CCAAGCTAGAATTTGGGAGC+AGG 0.546142 8_3:-58830693 None:intergenic
ACCTGTCAAATCACTAGCAT+CGG 0.546237 8_3:-58827192 None:intergenic
GCAAAGGTCAGAAACTCTGC+TGG 0.547430 8_3:+58828191 Msa1298130:CDS
CTTATGGCTTATATCAGTAG+TGG 0.547743 8_3:-58825439 None:intergenic
GTATCTGTCCGAGCATGTAA+AGG 0.548439 8_3:-58826933 None:intergenic
AGAAGAATGCTTCAGACGCC+CGG 0.550473 8_3:-58827868 None:intergenic
AATGGTGTTTCTGTGGAAGG+AGG 0.551675 8_3:-58831119 None:intergenic
ACCGATGCTAGTGATTTGAC+AGG 0.552424 8_3:+58827191 Msa1298130:CDS
ATGGAAAGAGAGAGAATGAG+AGG 0.556418 8_3:-58825158 None:intergenic
AACAATGAGGAGTCCCAAAA+GGG 0.557773 8_3:+58830480 Msa1298130:CDS
TTCACCCCTGAATATAATCA+AGG 0.559752 8_3:+58827077 Msa1298130:CDS
ACATTACTTGATGCCACGGC+AGG 0.560071 8_3:-58830211 None:intergenic
GATTGCCAAGGGATGCAAGT+TGG 0.561688 8_3:+58830931 Msa1298130:three_prime_UTR
AATCTTTACTAGGTTATACC+TGG 0.562944 8_3:+58830774 Msa1298130:three_prime_UTR
GGATCTCGATGGAGGACAAA+GGG 0.566793 8_3:+58826891 Msa1298130:CDS
TCGTCACGAGCTATAGAGCT+AGG 0.567657 8_3:-58828041 None:intergenic
ATATAATCAAGGATTCCAAA+AGG 0.569920 8_3:+58827088 Msa1298130:CDS
TCTTGTACAATACAACTAAG+AGG 0.575264 8_3:+58825099 Msa1298130:five_prime_UTR
TTACGAAAGTGAAACTCCGA+TGG 0.575376 8_3:+58827977 Msa1298130:CDS
GATTGAGACATGGGAAAACA+AGG 0.576682 8_3:+58825562 Msa1298130:exon
GAATTAGAGAGATTGATAAG+TGG 0.576897 8_3:-58825275 None:intergenic
TTTGCATTTCCTCGCAATGG+TGG 0.577452 8_3:+58830571 Msa1298130:CDS
TTGAGGAAAAGATTGAGACA+TGG 0.577970 8_3:+58825552 Msa1298130:exon
AATTTAGCAGTATCAACCAC+GGG 0.579103 8_3:-58829406 None:intergenic
ATGGTGTTTCTGTGGAAGGA+GGG 0.580700 8_3:-58831118 None:intergenic
TATTGAGCTTGGATTGCCAA+GGG 0.582624 8_3:+58830920 Msa1298130:three_prime_UTR
CAGTGACATTTAATATGTTG+AGG 0.582964 8_3:-58831657 None:intergenic
GCAGCTTTCTGAATTAGAGA+TGG 0.584857 8_3:-58827153 None:intergenic
CAAGCAATAGATCAAGTTCA+GGG 0.586403 8_3:+58827126 Msa1298130:CDS
AGCTCGTGACGAAGAGTCTG+AGG 0.591447 8_3:+58828052 Msa1298130:CDS
GTCTCTGTTGAGATAGGACA+TGG 0.594614 8_3:+58827999 Msa1298130:CDS
ATGCTTATGCTGCATCTGGA+TGG 0.594811 8_3:+58827054 Msa1298130:CDS
ATAGTAAAACCTGGCACTGG+TGG 0.598374 8_3:+58830505 Msa1298130:CDS
TGGATCTCGATGGAGGACAA+AGG 0.599405 8_3:+58826890 Msa1298130:CDS
TCAGATGAATGGTGTTTCTG+TGG 0.600576 8_3:-58831126 None:intergenic
TGCAACAGGAGCAGCTTGTG+TGG 0.602488 8_3:+58828222 Msa1298130:CDS
GTGATAGTAAAACCTGGCAC+TGG 0.602888 8_3:+58830502 Msa1298130:CDS
TTATGGCTTATATCAGTAGT+GGG 0.603224 8_3:-58825438 None:intergenic
TACAATTGCATACAAAACAC+TGG 0.603777 8_3:-58831024 None:intergenic
TTATTGAGCTTGGATTGCCA+AGG 0.608489 8_3:+58830919 Msa1298130:three_prime_UTR
TAGGAATCTGTACAATCCAA+TGG 0.620481 8_3:-58825242 None:intergenic
CTTCTACGAGTGCAGAAAGG+TGG 0.623014 8_3:+58830154 Msa1298130:intron
ATGAATGGTGTTTCTGTGGA+AGG 0.623129 8_3:-58831122 None:intergenic
GTAACTCCACAGTGAAAGCA+AGG 0.627202 8_3:-58825586 None:intergenic
CCAGTGTAATCACTAAGCAT+GGG 0.628822 8_3:-58828143 None:intergenic
TATCTCTTGTACAAGGACTT+CGG 0.632890 8_3:-58830866 None:intergenic
AAAAGGGTGATAGTAAAACC+TGG 0.635517 8_3:+58830496 Msa1298130:CDS
CATATATATAGCACAAAATG+CGG 0.640585 8_3:+58830990 Msa1298130:three_prime_UTR
CAGAATTGAAGACAACAATG+AGG 0.642781 8_3:+58830467 Msa1298130:intron
GGGAGCAGGAGCTCTGCCTG+TGG 0.642912 8_3:-58830679 None:intergenic
ATGTGCAAGCCACCATTGCG+AGG 0.645717 8_3:-58830580 None:intergenic
TCCTTGTACAAGAGATACGA+TGG 0.646277 8_3:+58830872 Msa1298130:three_prime_UTR
CCTATCTCAACAGAGACCAT+CGG 0.650405 8_3:-58827993 None:intergenic
GCCATCGTATCTCTTGTACA+AGG 0.652953 8_3:-58830873 None:intergenic
TGATATGGAATCTCCTGCCG+TGG 0.657248 8_3:+58830198 Msa1298130:CDS
CGATAGCTTTCAATTCAAGG+AGG 0.658269 8_3:+58829616 Msa1298130:CDS
GAATCCTTGATTATATTCAG+GGG 0.659607 8_3:-58827081 None:intergenic
ATTCCAAAAGGCTGTCGATG+AGG 0.660779 8_3:+58827100 Msa1298130:CDS
GCAATGCATGTGGATCTCGA+TGG 0.669120 8_3:+58826880 Msa1298130:CDS
GGTGGCCCGTTACGCCAAAG+TGG 0.670404 8_3:-58826840 None:intergenic
CCCATGCTTAGTGATTACAC+TGG 0.670617 8_3:+58828143 Msa1298130:CDS
TAAGACACAAGCAAAACATG+TGG 0.676172 8_3:-58830839 None:intergenic
ATGCATGTGGATCTCGATGG+AGG 0.680507 8_3:+58826883 Msa1298130:CDS
TTAGGATGTAGTGAACTACA+AGG 0.684148 8_3:+58829330 Msa1298130:intron
AAATTTAGCAGTATCAACCA+CGG 0.687637 8_3:-58829407 None:intergenic
CAAGGACCTTGCTTTCACTG+TGG 0.702292 8_3:+58825580 Msa1298130:CDS
GTCAGTAGTCTGGGATACTG+CGG 0.720733 8_3:+58827821 Msa1298130:CDS
ATTACTGAAGTATCTCCCCG+TGG 0.761483 8_3:+58829390 Msa1298130:CDS
ATTTAGCAGTATCAACCACG+GGG 0.799155 8_3:-58829405 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAACTGTATAT+TGG - chr8_3:58825630-58825649 None:intergenic 10.0%
!!! TTTTTTTTGCTATTTTTTTT+TGG + chr8_3:58825642-58825661 Msa1298130:intron 10.0%
!! AATATATTATTTGTTTATGT+TGG - chr8_3:58825793-58825812 None:intergenic 10.0%
!!! AAATTTAAAATGATTCATTT+AGG + chr8_3:58826370-58826389 Msa1298130:intron 10.0%
!!! ATATTTGATTTGAATAAAAA+TGG - chr8_3:58828808-58828827 None:intergenic 10.0%
!!! TTTTGTAATAATTTCATATT+CGG - chr8_3:58830317-58830336 None:intergenic 10.0%
!! AATATGATAAAAGATAATCA+TGG - chr8_3:58826178-58826197 None:intergenic 15.0%
!!! TTAAAGTATTTTGTAAATGA+AGG + chr8_3:58827509-58827528 Msa1298130:intron 15.0%
!!! CATATTAATATAATGTGTTT+TGG + chr8_3:58828877-58828896 Msa1298130:intron 15.0%
!!! AAATGATTTTTAATACTGTT+TGG + chr8_3:58828962-58828981 Msa1298130:intron 15.0%
!!! AATGATTTTTAATACTGTTT+GGG + chr8_3:58828963-58828982 Msa1298130:intron 15.0%
!! TCTTAAAAATAAAAAAGGAT+AGG - chr8_3:58830087-58830106 None:intergenic 15.0%
!! CTAACTCTTAAAAATAAAAA+AGG - chr8_3:58830092-58830111 None:intergenic 15.0%
!!! TATGGACATAATTTTATATT+TGG + chr8_3:58830809-58830828 Msa1298130:three_prime_UTR 15.0%
!!! CATAATTTTATATTTGGTTA+CGG + chr8_3:58830815-58830834 Msa1298130:three_prime_UTR 15.0%
!!! GTAAAAAAAAAGCACTTTTA+AGG + chr8_3:58825322-58825341 Msa1298130:five_prime_UTR 20.0%
!! GAATCATAAACAAATGTAAT+TGG + chr8_3:58825954-58825973 Msa1298130:intron 20.0%
!!! ATTTGAAAACAGTTTTCAAA+TGG + chr8_3:58826318-58826337 Msa1298130:intron 20.0%
!! TAAATTCATCAAGCAAATAT+GGG - chr8_3:58826506-58826525 None:intergenic 20.0%
!! ATAAATTCATCAAGCAAATA+TGG - chr8_3:58826507-58826526 None:intergenic 20.0%
!! TATGTAAAATATCTAGTAAG+AGG + chr8_3:58826583-58826602 Msa1298130:intron 20.0%
!! TTGATTATGCTCAAATAAAT+AGG - chr8_3:58827319-58827338 None:intergenic 20.0%
!!! TTGCTTTTATTAAAGAAACA+AGG - chr8_3:58827758-58827777 None:intergenic 20.0%
!! TAACTCTAATAACAATAGTT+TGG + chr8_3:58827779-58827798 Msa1298130:intron 20.0%
!! AACAATAGTTTGGTTAATTT+AGG + chr8_3:58827789-58827808 Msa1298130:intron 20.0%
!! GAATAACTATTAAGTCTTAA+AGG - chr8_3:58828597-58828616 None:intergenic 20.0%
!!! TTATTCCTTTTTGAAATTTC+AGG + chr8_3:58828611-58828630 Msa1298130:intron 20.0%
!!! TATTCCTTTTTGAAATTTCA+GGG + chr8_3:58828612-58828631 Msa1298130:intron 20.0%
!!! AAATGATATGATCATGATTT+TGG + chr8_3:58829005-58829024 Msa1298130:intron 20.0%
!!! AATGATATGATCATGATTTT+GGG + chr8_3:58829006-58829025 Msa1298130:intron 20.0%
!! AACATAACAAATTGACATTA+TGG + chr8_3:58829162-58829181 Msa1298130:intron 20.0%
!!! ACATTATGGTTTGATTTAAT+TGG + chr8_3:58829176-58829195 Msa1298130:intron 20.0%
!!! TTCAGCATTCATTAATTTTA+TGG - chr8_3:58829289-58829308 None:intergenic 20.0%
!! AAAATTGAAACTTATGTCAA+AGG - chr8_3:58829528-58829547 None:intergenic 20.0%
!! CATATCATTCATATTTATTC+AGG - chr8_3:58829971-58829990 None:intergenic 20.0%
!!! AAAGCTTAACATATTTTGTT+TGG + chr8_3:58830019-58830038 Msa1298130:intron 20.0%
!!! TTAACATATTTTGTTTGGTT+TGG + chr8_3:58830024-58830043 Msa1298130:intron 20.0%
!! TGTAGAAAATAATTGTACAT+TGG + chr8_3:58831285-58831304 Msa1298130:intron 20.0%
!! ACTTGTTTATAATTGTGAAT+CGG - chr8_3:58831439-58831458 None:intergenic 20.0%
!!! AATCCAATATATTTGTTTCT+TGG - chr8_3:58831482-58831501 None:intergenic 20.0%
! AATTAGAGAGATTGATAAGT+GGG - chr8_3:58825277-58825296 None:intergenic 25.0%
! TTAAAAACAAAAACTGCTTC+TGG + chr8_3:58825347-58825366 Msa1298130:five_prime_UTR 25.0%
! TAAAAACAAAAACTGCTTCT+GGG + chr8_3:58825348-58825367 Msa1298130:five_prime_UTR 25.0%
!! TTTTTGTTCAAAACTGTTTC+TGG + chr8_3:58825388-58825407 Msa1298130:intron 25.0%
!!! TTTTGTTCAAAACTGTTTCT+GGG + chr8_3:58825389-58825408 Msa1298130:intron 25.0%
!!! TGTTTTTTAAGCCTAACTTA+TGG - chr8_3:58825458-58825477 None:intergenic 25.0%
!! AATCTTTTCCTCAAACAAAA+GGG - chr8_3:58825546-58825565 None:intergenic 25.0%
! AAAATTGAAATATGTGTTGC+TGG + chr8_3:58825767-58825786 Msa1298130:intron 25.0%
! TAGTTCACTTATTTCACATT+TGG + chr8_3:58826051-58826070 Msa1298130:intron 25.0%
! TTGATGAATTTATTGCATAC+CGG + chr8_3:58826514-58826533 Msa1298130:intron 25.0%
!!! TATCTTATTTTCCTTGCAAA+AGG + chr8_3:58826537-58826556 Msa1298130:intron 25.0%
!!! ATCTTATTTTCCTTGCAAAA+GGG + chr8_3:58826538-58826557 Msa1298130:intron 25.0%
! TATCAGTATTCAAGATCATA+AGG - chr8_3:58826644-58826663 None:intergenic 25.0%
! TGTGATTGTTAATTGTCTAT+CGG + chr8_3:58826724-58826743 Msa1298130:intron 25.0%
! TAACAAATAATCCTTGCAAT+AGG + chr8_3:58826813-58826832 Msa1298130:intron 25.0%
! TAAGAACAAAGAAGTGAAAT+TGG + chr8_3:58827007-58827026 Msa1298130:CDS 25.0%
! ATATAATCAAGGATTCCAAA+AGG + chr8_3:58827088-58827107 Msa1298130:CDS 25.0%
! TCTATAGTATTTCAACTGAA+AGG - chr8_3:58827284-58827303 None:intergenic 25.0%
!! TCAAGAAGTGCATAATAAAA+TGG + chr8_3:58827335-58827354 Msa1298130:intron 25.0%
!! CAAGAAGTGCATAATAAAAT+GGG + chr8_3:58827336-58827355 Msa1298130:intron 25.0%
!! AAGAAGTGCATAATAAAATG+GGG + chr8_3:58827337-58827356 Msa1298130:intron 25.0%
! ATGAATAGTCTTTGTACATA+TGG + chr8_3:58828505-58828524 Msa1298130:intron 25.0%
! AAATATTAGAGATAAGACTG+TGG + chr8_3:58828538-58828557 Msa1298130:intron 25.0%
!!! CTTTTTTTTCCCTCTTTTTA+TGG + chr8_3:58828724-58828743 Msa1298130:intron 25.0%
! TCAAATATTCTATCCTAACA+TGG + chr8_3:58828820-58828839 Msa1298130:intron 25.0%
! ATAATTTCATGCATTACTCT+TGG + chr8_3:58828913-58828932 Msa1298130:intron 25.0%
! TAATTTCATGCATTACTCTT+GGG + chr8_3:58828914-58828933 Msa1298130:intron 25.0%
! TTTCACCATATAGATATTTG+TGG + chr8_3:58829123-58829142 Msa1298130:intron 25.0%
! AACCTCTTACAATTGTATAT+TGG + chr8_3:58829234-58829253 Msa1298130:intron 25.0%
! TCTTACAATTGTATATTGGT+CGG + chr8_3:58829238-58829257 Msa1298130:intron 25.0%
!! ATAACTTTTATTCCCTATTC+CGG - chr8_3:58829557-58829576 None:intergenic 25.0%
!! AGAACACTATAATTTTCTCA+AGG + chr8_3:58829766-58829785 Msa1298130:CDS 25.0%
!!! AATTTGACTTGAGATACAAT+TGG + chr8_3:58829939-58829958 Msa1298130:intron 25.0%
! TTGGTTTCAAAATTTGTATC+TGG + chr8_3:58830053-58830072 Msa1298130:intron 25.0%
!!! AACCTGGAAAATTTTGATTT+TGG - chr8_3:58830264-58830283 None:intergenic 25.0%
! ATTGATGTGTTTCAAAGTAA+AGG - chr8_3:58830358-58830377 None:intergenic 25.0%
! AACCTAGTAAAGATTATTCA+AGG - chr8_3:58830769-58830788 None:intergenic 25.0%
! CATATATATAGCACAAAATG+CGG + chr8_3:58830990-58831009 Msa1298130:three_prime_UTR 25.0%
!! CATTTATTTCTTCAGATGAA+TGG - chr8_3:58831140-58831159 None:intergenic 25.0%
! CATTCATCTGAAGAAATAAA+TGG + chr8_3:58831138-58831157 Msa1298130:three_prime_UTR 25.0%
!!! AATAGCTTTATGAATGGATA+GGG + chr8_3:58831164-58831183 Msa1298130:three_prime_UTR 25.0%
!! GATGAACTAGACAATTATTT+TGG + chr8_3:58831186-58831205 Msa1298130:three_prime_UTR 25.0%
! TCACCAAGAAACAAATATAT+TGG + chr8_3:58831476-58831495 Msa1298130:intron 25.0%
!! TTGAGATTTTACAACTGTTT+TGG + chr8_3:58831500-58831519 Msa1298130:intron 25.0%
!! TTGAAAGACATTTTACGATT+AGG + chr8_3:58831582-58831601 Msa1298130:intron 25.0%
! TTGGTTATAAAGAGTTTAGT+TGG + chr8_3:58831615-58831634 Msa1298130:three_prime_UTR 25.0%
TCTTGTACAATACAACTAAG+AGG + chr8_3:58825099-58825118 Msa1298130:five_prime_UTR 30.0%
! AATGTTCTTTTCTCTTCCAT+TGG + chr8_3:58825226-58825245 Msa1298130:five_prime_UTR 30.0%
GAATTAGAGAGATTGATAAG+TGG - chr8_3:58825278-58825297 None:intergenic 30.0%
TTATGGCTTATATCAGTAGT+GGG - chr8_3:58825441-58825460 None:intergenic 30.0%
ACTGATATAAGCCATAAGTT+AGG + chr8_3:58825444-58825463 Msa1298130:five_prime_UTR 30.0%
!! TTTATTTGCCCTTTTGTTTG+AGG + chr8_3:58825535-58825554 Msa1298130:five_prime_UTR 30.0%
! CAATCTTTTCCTCAAACAAA+AGG - chr8_3:58825547-58825566 None:intergenic 30.0%
!! TTGTTGTTGTCTAGTGTTTT+GGG + chr8_3:58825830-58825849 Msa1298130:intron 30.0%
GAACATAAGAGAAAGAAAAG+AGG + chr8_3:58826084-58826103 Msa1298130:intron 30.0%
AGAAAGAAAAGAGGATAATG+TGG + chr8_3:58826093-58826112 Msa1298130:intron 30.0%
!! ATCCACTCATGTGTTTTAAA+AGG + chr8_3:58826139-58826158 Msa1298130:intron 30.0%
!!! ATCCTTTTAAAACACATGAG+TGG - chr8_3:58826144-58826163 None:intergenic 30.0%
! CAGATAAATGCTAATCCTTT+TGG + chr8_3:58826423-58826442 Msa1298130:intron 30.0%
!! ATGCTTGGATTTTAACCAAA+AGG - chr8_3:58826441-58826460 None:intergenic 30.0%
ATTTAAGAGGTCATGTATAC+TGG - chr8_3:58826475-58826494 None:intergenic 30.0%
TTGCAAGGAAAATAAGATAC+CGG - chr8_3:58826536-58826555 None:intergenic 30.0%
ATCTAGTAAGAGGAAGATAT+TGG + chr8_3:58826593-58826612 Msa1298130:intron 30.0%
AGATATTGGACAATTTAAGC+AGG + chr8_3:58826607-58826626 Msa1298130:intron 30.0%
TGAACTCAGAAAACATCTTA+AGG - chr8_3:58826683-58826702 None:intergenic 30.0%
! ATTGCATAAAATTGGCTTCT+CGG - chr8_3:58826865-58826884 None:intergenic 30.0%
ATTATACTCCTTTACATGCT+CGG + chr8_3:58826925-58826944 Msa1298130:CDS 30.0%
GAATCCTTGATTATATTCAG+GGG - chr8_3:58827084-58827103 None:intergenic 30.0%
GGAATCCTTGATTATATTCA+GGG - chr8_3:58827085-58827104 None:intergenic 30.0%
TGGAATCCTTGATTATATTC+AGG - chr8_3:58827086-58827105 None:intergenic 30.0%
GAATTGCAAATGAACATATG+AGG + chr8_3:58827384-58827403 Msa1298130:intron 30.0%
! TGATAACTTGTCTTCCTTTA+GGG - chr8_3:58827419-58827438 None:intergenic 30.0%
! ATGATAACTTGTCTTCCTTT+AGG - chr8_3:58827420-58827439 None:intergenic 30.0%
TAAACAATGCCTAATGAATG+AGG + chr8_3:58828097-58828116 Msa1298130:CDS 30.0%
CATATGTGTAACTTTAGTAG+TGG - chr8_3:58828403-58828422 None:intergenic 30.0%
TTGATATTATTCTCCTGAAG+TGG + chr8_3:58828461-58828480 Msa1298130:intron 30.0%
!! TAAGACTGTGGAATTTGTTT+TGG + chr8_3:58828550-58828569 Msa1298130:intron 30.0%
TTGTCCCTGAAATTTCAAAA+AGG - chr8_3:58828619-58828638 None:intergenic 30.0%
CTTGAAAAACTAGAAGTTCT+TGG + chr8_3:58828646-58828665 Msa1298130:CDS 30.0%
CCAAACAATCCATAAAAAGA+GGG - chr8_3:58828736-58828755 None:intergenic 30.0%
TTAGTACTTACTACAAGACT+GGG - chr8_3:58828783-58828802 None:intergenic 30.0%
TTTAGTACTTACTACAAGAC+TGG - chr8_3:58828784-58828803 None:intergenic 30.0%
! TTTTAATACTGTTTGGGAGT+AGG + chr8_3:58828969-58828988 Msa1298130:intron 30.0%
CATCTCCACAAATATCTATA+TGG - chr8_3:58829131-58829150 None:intergenic 30.0%
GACCAATATACAATTGTAAG+AGG - chr8_3:58829239-58829258 None:intergenic 30.0%
AATGCAATATCTGTCATGTT+TGG + chr8_3:58829307-58829326 Msa1298130:intron 30.0%
AATATCTGTCATGTTTGGTT+AGG + chr8_3:58829312-58829331 Msa1298130:intron 30.0%
AAATTTAGCAGTATCAACCA+CGG - chr8_3:58829410-58829429 None:intergenic 30.0%
ATACTGCTAAATTTCCTGAT+AGG + chr8_3:58829416-58829435 Msa1298130:CDS 30.0%
! AAGTTTCAATTTTGTCTCTC+CGG + chr8_3:58829535-58829554 Msa1298130:intron 30.0%
AGGGAATAAAAGTTATTGAC+CGG + chr8_3:58829561-58829580 Msa1298130:intron 30.0%
! TTATTTTCAGAAACTTCTCG+AGG + chr8_3:58829646-58829665 Msa1298130:CDS 30.0%
GTCTTTGATATCTCTTTGTT+TGG + chr8_3:58829674-58829693 Msa1298130:CDS 30.0%
! TTTGATATCTCTTTGTTTGG+AGG + chr8_3:58829677-58829696 Msa1298130:CDS 30.0%
!!! TTAGTTTTGCCAGTTTAGAT+TGG + chr8_3:58830108-58830127 Msa1298130:intron 30.0%
TGAACTAATCCAATCTAAAC+TGG - chr8_3:58830120-58830139 None:intergenic 30.0%
! AGCCAAAATCAAAATTTTCC+AGG + chr8_3:58830259-58830278 Msa1298130:CDS 30.0%
ACAACTGATAACAATAACAC+AGG - chr8_3:58830396-58830415 None:intergenic 30.0%
!! CAATTCTGAAATTTGCAAGA+TGG - chr8_3:58830455-58830474 None:intergenic 30.0%
TGTGGAAAAGAATTGTTAGA+TGG - chr8_3:58830664-58830683 None:intergenic 30.0%
! ATCTAACAATTCTTTTCCAC+AGG + chr8_3:58830663-58830682 Msa1298130:CDS 30.0%
GTCCTTGAATAATCTTTACT+AGG + chr8_3:58830764-58830783 Msa1298130:exon 30.0%
AATCTTTACTAGGTTATACC+TGG + chr8_3:58830774-58830793 Msa1298130:three_prime_UTR 30.0%
TACAATTGCATACAAAACAC+TGG - chr8_3:58831027-58831046 None:intergenic 30.0%
!! TGGATGAATAGCTTTATGAA+TGG + chr8_3:58831158-58831177 Msa1298130:three_prime_UTR 30.0%
!! GAATAGCTTTATGAATGGAT+AGG + chr8_3:58831163-58831182 Msa1298130:three_prime_UTR 30.0%
!!! ACTTGATGTGTTTGGTTTTA+TGG + chr8_3:58831234-58831253 Msa1298130:intron 30.0%
!! ACGATTAGGATTTTAGTGTT+TGG + chr8_3:58831596-58831615 Msa1298130:three_prime_UTR 30.0%
CAGTGACATTTAATATGTTG+AGG - chr8_3:58831660-58831679 None:intergenic 30.0%
AATGAGAGAGAAAAGGAGAA+GGG - chr8_3:58825192-58825211 None:intergenic 35.0%
TCTGATGAATGAGAGAGAAA+AGG - chr8_3:58825199-58825218 None:intergenic 35.0%
GGAAGAGAAAAGAACATTGA+AGG - chr8_3:58825224-58825243 None:intergenic 35.0%
TAGGAATCTGTACAATCCAA+TGG - chr8_3:58825245-58825264 None:intergenic 35.0%
CTTATGGCTTATATCAGTAG+TGG - chr8_3:58825442-58825461 None:intergenic 35.0%
TTGAGGAAAAGATTGAGACA+TGG + chr8_3:58825552-58825571 Msa1298130:exon 35.0%
TGAGGAAAAGATTGAGACAT+GGG + chr8_3:58825553-58825572 Msa1298130:exon 35.0%
!! GTTGTTGTTGTCTAGTGTTT+TGG + chr8_3:58825829-58825848 Msa1298130:intron 35.0%
CACACAAAACACATCAAAGT+AGG - chr8_3:58825887-58825906 None:intergenic 35.0%
TCAGAATCTGTTGAATGCAT+AGG + chr8_3:58825990-58826009 Msa1298130:intron 35.0%
TGGATTTGTGAAATGTCCAT+TGG + chr8_3:58826113-58826132 Msa1298130:intron 35.0%
!! TTGGAGGATTAGTTCTATTG+AGG - chr8_3:58826253-58826272 None:intergenic 35.0%
TCAATAGAACTAATCCTCCA+AGG + chr8_3:58826252-58826271 Msa1298130:intron 35.0%
!!! AATTTTGAAGTGCACACCAA+CGG - chr8_3:58826355-58826374 None:intergenic 35.0%
ATGGGTGAACTCAATTTAAG+AGG - chr8_3:58826488-58826507 None:intergenic 35.0%
TTGGACAATTTAAGCAGGAA+TGG + chr8_3:58826612-58826631 Msa1298130:intron 35.0%
! GTTTTCTGAGTTCAGTTTTG+TGG + chr8_3:58826689-58826708 Msa1298130:intron 35.0%
TGTCTATCGGTCTTTCTAAT+TGG + chr8_3:58826737-58826756 Msa1298130:intron 35.0%
! TCTCTTTTCTTGTGTACAAG+AGG + chr8_3:58826766-58826785 Msa1298130:intron 35.0%
! CTCTTTTCTTGTGTACAAGA+GGG + chr8_3:58826767-58826786 Msa1298130:intron 35.0%
! TTGCATAAAATTGGCTTCTC+GGG - chr8_3:58826864-58826883 None:intergenic 35.0%
CCACATGCATTGCATAAAAT+TGG - chr8_3:58826873-58826892 None:intergenic 35.0%
! CCAATTTTATGCAATGCATG+TGG + chr8_3:58826870-58826889 Msa1298130:CDS 35.0%
TTCACCCCTGAATATAATCA+AGG + chr8_3:58827077-58827096 Msa1298130:CDS 35.0%
ACAAGCAATAGATCAAGTTC+AGG + chr8_3:58827125-58827144 Msa1298130:CDS 35.0%
CAAGCAATAGATCAAGTTCA+GGG + chr8_3:58827126-58827145 Msa1298130:CDS 35.0%
TGTTTCTTCATAACCGATCA+TGG + chr8_3:58827249-58827268 Msa1298130:intron 35.0%
GTGTCTCAAAACAATTGCAA+TGG + chr8_3:58827539-58827558 Msa1298130:intron 35.0%
CGTGAAGATTTGCATATATG+AGG + chr8_3:58827663-58827682 Msa1298130:intron 35.0%
TGGTTAATTTAGGTCCTTCT+CGG + chr8_3:58827799-58827818 Msa1298130:intron 35.0%
!!! GCACATGTTCTCTTTTTTGA+AGG - chr8_3:58827849-58827868 None:intergenic 35.0%
TCAAAAAAGAGAACATGTGC+CGG + chr8_3:58827849-58827868 Msa1298130:CDS 35.0%
ACGAATATGCCTCATTCATT+AGG - chr8_3:58828109-58828128 None:intergenic 35.0%
AATGAGGCATATTCGTGTTA+TGG + chr8_3:58828113-58828132 Msa1298130:CDS 35.0%
!! CCCTCTTTTTATGGATTGTT+TGG + chr8_3:58828733-58828752 Msa1298130:intron 35.0%
GCCAAACAATCCATAAAAAG+AGG - chr8_3:58828737-58828756 None:intergenic 35.0%
TTAGGATGTAGTGAACTACA+AGG + chr8_3:58829330-58829349 Msa1298130:intron 35.0%
AATTTAGCAGTATCAACCAC+GGG - chr8_3:58829409-58829428 None:intergenic 35.0%
TTTCCTGATAGGTTAGAATC+TGG + chr8_3:58829427-58829446 Msa1298130:intron 35.0%
TAACCAGATTCTAACCTATC+AGG - chr8_3:58829433-58829452 None:intergenic 35.0%
! AATTTTGTCTCTCCGGAATA+GGG + chr8_3:58829542-58829561 Msa1298130:intron 35.0%
GTTCGATAGCTTTCAATTCA+AGG + chr8_3:58829613-58829632 Msa1298130:CDS 35.0%
AAGACTGCAAGACATCTAAA+AGG + chr8_3:58829708-58829727 Msa1298130:CDS 35.0%
! AATTTTCTCAAGGTTTGTGC+TGG + chr8_3:58829776-58829795 Msa1298130:intron 35.0%
CTTGTCAGATATCACATCTA+GGG + chr8_3:58829856-58829875 Msa1298130:intron 35.0%
TTGTCAGATATCACATCTAG+GGG + chr8_3:58829857-58829876 Msa1298130:intron 35.0%
!! TTGTTTGGTTTGGATGTAGT+TGG + chr8_3:58830034-58830053 Msa1298130:intron 35.0%
AGCTGGAAAACGTAATGATA+TGG + chr8_3:58830183-58830202 Msa1298130:CDS 35.0%
CAGAATTGAAGACAACAATG+AGG + chr8_3:58830467-58830486 Msa1298130:intron 35.0%
! GGTTTTACTATCACCCTTTT+GGG - chr8_3:58830496-58830515 None:intergenic 35.0%
! AGGTTTTACTATCACCCTTT+TGG - chr8_3:58830497-58830516 None:intergenic 35.0%
AAAAGGGTGATAGTAAAACC+TGG + chr8_3:58830496-58830515 Msa1298130:CDS 35.0%
! GGAAATGCAAATAGGCTTTT+CGG - chr8_3:58830562-58830581 None:intergenic 35.0%
! AAACTTCGTTGATGAGAGTT+CGG + chr8_3:58830615-58830634 Msa1298130:CDS 35.0%
TAAGACACAAGCAAAACATG+TGG - chr8_3:58830842-58830861 None:intergenic 35.0%
TATCTCTTGTACAAGGACTT+CGG - chr8_3:58830869-58830888 None:intergenic 35.0%
!!! TTGGATGGGCTATTTTGTAT+AGG + chr8_3:58830950-58830969 Msa1298130:three_prime_UTR 35.0%
! ACACATCAAGTGTCATGTTT+TGG - chr8_3:58831225-58831244 None:intergenic 35.0%
AACATGACACTTGATGTGTT+TGG + chr8_3:58831226-58831245 Msa1298130:intron 35.0%
!! AGAGTGTCAAATGATTTGCT+AGG + chr8_3:58831260-58831279 Msa1298130:intron 35.0%
!! AACCTGTTTGTTGTGTCATT+AGG + chr8_3:58831334-58831353 Msa1298130:intron 35.0%
TGAAGAGGATAGTCAAAACA+TGG + chr8_3:58831360-58831379 Msa1298130:intron 35.0%
! AGTCAAAACATGGTTGGTAT+TGG + chr8_3:58831370-58831389 Msa1298130:intron 35.0%
! GTCAAAACATGGTTGGTATT+GGG + chr8_3:58831371-58831390 Msa1298130:intron 35.0%
! ATATTTGTTTCTTGGTGAGC+TGG - chr8_3:58831474-58831493 None:intergenic 35.0%
AAAGAGAGAGAATGAGAGGA+AGG - chr8_3:58825157-58825176 None:intergenic 40.0%
ATGGAAAGAGAGAGAATGAG+AGG - chr8_3:58825161-58825180 None:intergenic 40.0%
GAATGAGAGAGAAAAGGAGA+AGG - chr8_3:58825193-58825212 None:intergenic 40.0%
!!! GATAAGTGGGTGTTTTAGCT+AGG - chr8_3:58825264-58825283 None:intergenic 40.0%
GATTGAGACATGGGAAAACA+AGG + chr8_3:58825562-58825581 Msa1298130:exon 40.0%
! CAAAGTCTGTTTTGCAACCT+TGG + chr8_3:58825725-58825744 Msa1298130:intron 40.0%
CAAAATCACAATCAGTGCCA+AGG - chr8_3:58825745-58825764 None:intergenic 40.0%
!!! GTTGTCTAGTGTTTTGGGAT+TGG + chr8_3:58825835-58825854 Msa1298130:intron 40.0%
!! CACATGAGTGGATTAACCAA+TGG - chr8_3:58826132-58826151 None:intergenic 40.0%
ATGTTTAAGAGTTGCAGCCT+TGG - chr8_3:58826272-58826291 None:intergenic 40.0%
CTGGTAAGTAAGACAATGCT+TGG - chr8_3:58826456-58826475 None:intergenic 40.0%
!!! GACAGATACTGTCGATTTTG+AGG + chr8_3:58826947-58826966 Msa1298130:CDS 40.0%
TTGAGGATCAGAGAGTTTCA+AGG + chr8_3:58826964-58826983 Msa1298130:CDS 40.0%
GATAATGCTTATGCTGCATC+TGG + chr8_3:58827050-58827069 Msa1298130:CDS 40.0%
GCAGCTTTCTGAATTAGAGA+TGG - chr8_3:58827156-58827175 None:intergenic 40.0%
TCAGAAAGCTGCGTTCAATT+TGG + chr8_3:58827164-58827183 Msa1298130:CDS 40.0%
ACCTGTCAAATCACTAGCAT+CGG - chr8_3:58827195-58827214 None:intergenic 40.0%
ATGCTAGTGATTTGACAGGT+TGG + chr8_3:58827195-58827214 Msa1298130:intron 40.0%
! GTCTTCCTTTAGGGAAACAA+AGG - chr8_3:58827410-58827429 None:intergenic 40.0%
ATCTACTGCAGCTCAAAAAC+AGG + chr8_3:58827729-58827748 Msa1298130:intron 40.0%
CAAAAAAGAGAACATGTGCC+GGG + chr8_3:58827850-58827869 Msa1298130:CDS 40.0%
! AACAGGATTGCTGTTGTTCA+TGG - chr8_3:58827929-58827948 None:intergenic 40.0%
TTCAGAAGAAGCAGAGAAAC+AGG - chr8_3:58827946-58827965 None:intergenic 40.0%
! TTTCTCTGCTTCTTCTGAAG+AGG + chr8_3:58827947-58827966 Msa1298130:CDS 40.0%
TTACGAAAGTGAAACTCCGA+TGG + chr8_3:58827977-58827996 Msa1298130:CDS 40.0%
! GACATGGAAGCATGCTTATT+AGG + chr8_3:58828015-58828034 Msa1298130:CDS 40.0%
CCAGTGTAATCACTAAGCAT+GGG - chr8_3:58828146-58828165 None:intergenic 40.0%
TGGCATGAATTTCTCTTCTC+AGG + chr8_3:58828163-58828182 Msa1298130:CDS 40.0%
GGCATGAATTTCTCTTCTCA+GGG + chr8_3:58828164-58828183 Msa1298130:CDS 40.0%
TAAGATCTTCGTACCACTTC+AGG - chr8_3:58828477-58828496 None:intergenic 40.0%
GGTTAATTGCTATGCACTGA+TGG - chr8_3:58829218-58829237 None:intergenic 40.0%
ATTTAGCAGTATCAACCACG+GGG - chr8_3:58829408-58829427 None:intergenic 40.0%
! CAATTTTGTCTCTCCGGAAT+AGG + chr8_3:58829541-58829560 Msa1298130:intron 40.0%
CGATAGCTTTCAATTCAAGG+AGG + chr8_3:58829616-58829635 Msa1298130:CDS 40.0%
TTTCAGAAACTTCTCGAGGA+AGG + chr8_3:58829650-58829669 Msa1298130:CDS 40.0%
TAGATGTCTTGCAGTCTTCA+GGG - chr8_3:58829706-58829725 None:intergenic 40.0%
TTAGATGTCTTGCAGTCTTC+AGG - chr8_3:58829707-58829726 None:intergenic 40.0%
GCTTGTCAGATATCACATCT+AGG + chr8_3:58829855-58829874 Msa1298130:intron 40.0%
ATTCTTCTACGAGTGCAGAA+AGG + chr8_3:58830151-58830170 Msa1298130:intron 40.0%
! GACAAGAGATTTTGCTAACC+TGG - chr8_3:58830280-58830299 None:intergenic 40.0%
AACAATGAGGAGTCCCAAAA+GGG + chr8_3:58830480-58830499 Msa1298130:CDS 40.0%
CATTGCGAGGAAATGCAAAT+AGG - chr8_3:58830570-58830589 None:intergenic 40.0%
CTATTTGCATTTCCTCGCAA+TGG + chr8_3:58830568-58830587 Msa1298130:CDS 40.0%
GAGCAACCAAGCTAGAATTT+GGG - chr8_3:58830702-58830721 None:intergenic 40.0%
TGAGCAACCAAGCTAGAATT+TGG - chr8_3:58830703-58830722 None:intergenic 40.0%
!! AATTCTAGCTTGGTTGCTCA+AGG + chr8_3:58830703-58830722 Msa1298130:CDS 40.0%
! ACCTGGAAGAGTATGTACTA+TGG + chr8_3:58830791-58830810 Msa1298130:three_prime_UTR 40.0%
TCCATAGTACATACTCTTCC+AGG - chr8_3:58830795-58830814 None:intergenic 40.0%
TCCTTGTACAAGAGATACGA+TGG + chr8_3:58830872-58830891 Msa1298130:three_prime_UTR 40.0%
ACTTGCAACCTTATTGAGCT+TGG + chr8_3:58830909-58830928 Msa1298130:three_prime_UTR 40.0%
TTGGCAATCCAAGCTCAATA+AGG - chr8_3:58830920-58830939 None:intergenic 40.0%
TTATTGAGCTTGGATTGCCA+AGG + chr8_3:58830919-58830938 Msa1298130:three_prime_UTR 40.0%
TATTGAGCTTGGATTGCCAA+GGG + chr8_3:58830920-58830939 Msa1298130:three_prime_UTR 40.0%
! ATGAATGGTGTTTCTGTGGA+AGG - chr8_3:58831125-58831144 None:intergenic 40.0%
! TCAGATGAATGGTGTTTCTG+TGG - chr8_3:58831129-58831148 None:intergenic 40.0%
CACCTAATGACACAACAAAC+AGG - chr8_3:58831339-58831358 None:intergenic 40.0%
!! CTGTTTGTTGTGTCATTAGG+TGG + chr8_3:58831337-58831356 Msa1298130:intron 40.0%
GAGGATAGTCAAAACATGGT+TGG + chr8_3:58831364-58831383 Msa1298130:intron 40.0%
AAGAGTTTAGTTGGCAAGTG+AGG + chr8_3:58831624-58831643 Msa1298130:three_prime_UTR 40.0%
AGAGAGAATGAGAGGAAGGA+AGG - chr8_3:58825153-58825172 None:intergenic 45.0%
AGAGAGAAAAGGAGAAGGGA+AGG - chr8_3:58825188-58825207 None:intergenic 45.0%
GTAACTCCACAGTGAAAGCA+AGG - chr8_3:58825589-58825608 None:intergenic 45.0%
TTTAAGAGTTGCAGCCTTGG+AGG - chr8_3:58826269-58826288 None:intergenic 45.0%
AAAGTGGTGTGCCTATTGCA+AGG - chr8_3:58826827-58826846 None:intergenic 45.0%
TTGCAATAGGCACACCACTT+TGG + chr8_3:58826826-58826845 Msa1298130:intron 45.0%
! CATAAAATTGGCTTCTCGGG+TGG - chr8_3:58826861-58826880 None:intergenic 45.0%
GTATCTGTCCGAGCATGTAA+AGG - chr8_3:58826936-58826955 None:intergenic 45.0%
ATGCTTATGCTGCATCTGGA+TGG + chr8_3:58827054-58827073 Msa1298130:CDS 45.0%
ATTCCAAAAGGCTGTCGATG+AGG + chr8_3:58827100-58827119 Msa1298130:CDS 45.0%
! TATCCTCATCGACAGCCTTT+TGG - chr8_3:58827106-58827125 None:intergenic 45.0%
GAAAGCTGCGTTCAATTTGG+CGG + chr8_3:58827167-58827186 Msa1298130:CDS 45.0%
ACCGATGCTAGTGATTTGAC+AGG + chr8_3:58827191-58827210 Msa1298130:CDS 45.0%
AAGGACAATGCTGCCATGAT+CGG - chr8_3:58827265-58827284 None:intergenic 45.0%
! TGAGGCCTTTGTTTCCCTAA+AGG + chr8_3:58827402-58827421 Msa1298130:intron 45.0%
CCTATCTCAACAGAGACCAT+CGG - chr8_3:58827996-58828015 None:intergenic 45.0%
GTCTCTGTTGAGATAGGACA+TGG + chr8_3:58827999-58828018 Msa1298130:CDS 45.0%
CCCATGCTTAGTGATTACAC+TGG + chr8_3:58828143-58828162 Msa1298130:CDS 45.0%
GCCAGTGTAATCACTAAGCA+TGG - chr8_3:58828147-58828166 None:intergenic 45.0%
ACACTGCAGCAAACCATGTT+AGG - chr8_3:58828836-58828855 None:intergenic 45.0%
!! TGGTTTGCTGCAGTGTTGTT+TGG + chr8_3:58828840-58828859 Msa1298130:intron 45.0%
GCATTACTCTTGGGACTTTC+TGG + chr8_3:58828923-58828942 Msa1298130:intron 45.0%
CGGGGAGATACTTCAGTAAT+TGG - chr8_3:58829390-58829409 None:intergenic 45.0%
! ATTACTGAAGTATCTCCCCG+TGG + chr8_3:58829390-58829409 Msa1298130:CDS 45.0%
TGCTGCACATACAACAATGC+CGG - chr8_3:58829583-58829602 None:intergenic 45.0%
CAGAAAGGTGGAAACAAAGC+TGG + chr8_3:58830166-58830185 Msa1298130:intron 45.0%
CGCAACATTACTTGATGCCA+CGG - chr8_3:58830218-58830237 None:intergenic 45.0%
CAACAATGAGGAGTCCCAAA+AGG + chr8_3:58830479-58830498 Msa1298130:CDS 45.0%
GTGATAGTAAAACCTGGCAC+TGG + chr8_3:58830502-58830521 Msa1298130:CDS 45.0%
! ATAGTAAAACCTGGCACTGG+TGG + chr8_3:58830505-58830524 Msa1298130:CDS 45.0%
TTTGCATTTCCTCGCAATGG+TGG + chr8_3:58830571-58830590 Msa1298130:CDS 45.0%
CGAGTATACTGAGCTACTAC+TGG - chr8_3:58830734-58830753 None:intergenic 45.0%
GCCATCGTATCTCTTGTACA+AGG - chr8_3:58830876-58830895 None:intergenic 45.0%
! ATGGTGTTTCTGTGGAAGGA+GGG - chr8_3:58831121-58831140 None:intergenic 45.0%
! AATGGTGTTTCTGTGGAAGG+AGG - chr8_3:58831122-58831141 None:intergenic 45.0%
TGGTCGCAAATGTGTAGCTT+TGG + chr8_3:58831305-58831324 Msa1298130:intron 45.0%
! TGTGTCATTAGGTGGTGAAG+AGG + chr8_3:58831345-58831364 Msa1298130:intron 45.0%
! AAGGAGAAGGGAAGGTGCAA+TGG - chr8_3:58825180-58825199 None:intergenic 50.0%
CAAGGACCTTGCTTTCACTG+TGG + chr8_3:58825580-58825599 Msa1298130:CDS 50.0%
AATGGTGAAGTCGATGCCGT+TGG + chr8_3:58826336-58826355 Msa1298130:intron 50.0%
! CATAGCAACGCCCTTTTGCA+AGG - chr8_3:58826551-58826570 None:intergenic 50.0%
GCAATGCATGTGGATCTCGA+TGG + chr8_3:58826880-58826899 Msa1298130:CDS 50.0%
ATGCATGTGGATCTCGATGG+AGG + chr8_3:58826883-58826902 Msa1298130:CDS 50.0%
TGGATCTCGATGGAGGACAA+AGG + chr8_3:58826890-58826909 Msa1298130:CDS 50.0%
GGATCTCGATGGAGGACAAA+GGG + chr8_3:58826891-58826910 Msa1298130:CDS 50.0%
TCCTTCTCGGTCAGTAGTCT+GGG + chr8_3:58827812-58827831 Msa1298130:CDS 50.0%
! GTCAGTAGTCTGGGATACTG+CGG + chr8_3:58827821-58827840 Msa1298130:CDS 50.0%
AGAAGAATGCTTCAGACGCC+CGG - chr8_3:58827871-58827890 None:intergenic 50.0%
CCGATGGTCTCTGTTGAGAT+AGG + chr8_3:58827993-58828012 Msa1298130:CDS 50.0%
TCGTCACGAGCTATAGAGCT+AGG - chr8_3:58828044-58828063 None:intergenic 50.0%
CTCTTCTCAGGGAGTTGCAA+AGG + chr8_3:58828175-58828194 Msa1298130:CDS 50.0%
GCAAAGGTCAGAAACTCTGC+TGG + chr8_3:58828191-58828210 Msa1298130:CDS 50.0%
GGGACTTTCTGGATAGCAAC+TGG + chr8_3:58828934-58828953 Msa1298130:intron 50.0%
CTTCTACGAGTGCAGAAAGG+TGG + chr8_3:58830154-58830173 Msa1298130:intron 50.0%
TGATATGGAATCTCCTGCCG+TGG + chr8_3:58830198-58830217 Msa1298130:CDS 50.0%
ACATTACTTGATGCCACGGC+AGG - chr8_3:58830214-58830233 None:intergenic 50.0%
GGTGGCAAAGAAGCTGTAGA+TGG + chr8_3:58830523-58830542 Msa1298130:CDS 50.0%
! CGTTGATGAGAGTTCGGATC+AGG + chr8_3:58830621-58830640 Msa1298130:CDS 50.0%
CCAAGCTAGAATTTGGGAGC+AGG - chr8_3:58830696-58830715 None:intergenic 50.0%
! CCTGCTCCCAAATTCTAGCT+TGG + chr8_3:58830693-58830712 Msa1298130:CDS 50.0%
GATTGCCAAGGGATGCAAGT+TGG + chr8_3:58830931-58830950 Msa1298130:three_prime_UTR 50.0%
! CCAAGGGATGCAAGTTGGAT+GGG + chr8_3:58830936-58830955 Msa1298130:three_prime_UTR 50.0%
GGCACACCACTTTGGCGTAA+CGG + chr8_3:58826834-58826853 Msa1298130:intron 55.0%
GCACACCACTTTGGCGTAAC+GGG + chr8_3:58826835-58826854 Msa1298130:CDS 55.0%
GTCCTTCTCGGTCAGTAGTC+TGG + chr8_3:58827811-58827830 Msa1298130:CDS 55.0%
TCCCAGACTACTGACCGAGA+AGG - chr8_3:58827816-58827835 None:intergenic 55.0%
AGCTCGTGACGAAGAGTCTG+AGG + chr8_3:58828052-58828071 Msa1298130:CDS 55.0%
GCTGCTCCTGTTGCAGTCTT+GGG - chr8_3:58828217-58828236 None:intergenic 55.0%
AGCTGCTCCTGTTGCAGTCT+TGG - chr8_3:58828218-58828237 None:intergenic 55.0%
TGCAACAGGAGCAGCTTGTG+TGG + chr8_3:58828222-58828241 Msa1298130:CDS 55.0%
ATGTGCAAGCCACCATTGCG+AGG - chr8_3:58830583-58830602 None:intergenic 55.0%
! CAATGGTGGCTTGCACATGC+TGG + chr8_3:58830585-58830604 Msa1298130:CDS 55.0%
! GCCAAGGGATGCAAGTTGGA+TGG + chr8_3:58830935-58830954 Msa1298130:three_prime_UTR 55.0%
CCCATCCAACTTGCATCCCT+TGG - chr8_3:58830939-58830958 None:intergenic 55.0%
TGCTGGCCCAAGACTGCAAC+AGG + chr8_3:58828208-58828227 Msa1298130:CDS 60.0%
GCTTCTTTGCCACCAGTGCC+AGG - chr8_3:58830517-58830536 None:intergenic 60.0%
GGTGGCCCGTTACGCCAAAG+TGG - chr8_3:58826843-58826862 None:intergenic 65.0%
GGGAGCAGGAGCTCTGCCTG+TGG - chr8_3:58830682-58830701 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 58825071 58831695 58825071 ID=Msa1298130;Name=Msa1298130
chr8_3 mRNA 58825071 58831695 58825071 ID=Msa1298130-mRNA-1;Parent=Msa1298130;Name=Msa1298130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=459|1|1|1|0.7|0.54|11|544|542
chr8_3 exon 58825071 58825369 58825071 ID=Msa1298130-mRNA-1:exon:16906;Parent=Msa1298130-mRNA-1
chr8_3 exon 58825411 58825610 58825411 ID=Msa1298130-mRNA-1:exon:16907;Parent=Msa1298130-mRNA-1
chr8_3 exon 58826835 58827212 58826835 ID=Msa1298130-mRNA-1:exon:16908;Parent=Msa1298130-mRNA-1
chr8_3 exon 58827811 58828243 58827811 ID=Msa1298130-mRNA-1:exon:16909;Parent=Msa1298130-mRNA-1
chr8_3 exon 58828633 58828705 58828633 ID=Msa1298130-mRNA-1:exon:16910;Parent=Msa1298130-mRNA-1
chr8_3 exon 58829334 58829437 58829334 ID=Msa1298130-mRNA-1:exon:16911;Parent=Msa1298130-mRNA-1
chr8_3 exon 58829601 58829787 58829601 ID=Msa1298130-mRNA-1:exon:16912;Parent=Msa1298130-mRNA-1
chr8_3 exon 58830169 58830280 58830169 ID=Msa1298130-mRNA-1:exon:16913;Parent=Msa1298130-mRNA-1
chr8_3 exon 58830470 58831069 58830470 ID=Msa1298130-mRNA-1:exon:16914;Parent=Msa1298130-mRNA-1
chr8_3 exon 58831093 58831230 58831093 ID=Msa1298130-mRNA-1:exon:16915;Parent=Msa1298130-mRNA-1
chr8_3 exon 58831588 58831695 58831588 ID=Msa1298130-mRNA-1:exon:16916;Parent=Msa1298130-mRNA-1
chr8_3 five_prime_UTR 58825071 58825369 58825071 ID=Msa1298130-mRNA-1:five_prime_utr;Parent=Msa1298130-mRNA-1
chr8_3 five_prime_UTR 58825411 58825570 58825411 ID=Msa1298130-mRNA-1:five_prime_utr;Parent=Msa1298130-mRNA-1
chr8_3 CDS 58825571 58825610 58825571 ID=Msa1298130-mRNA-1:cds;Parent=Msa1298130-mRNA-1
chr8_3 CDS 58826835 58827212 58826835 ID=Msa1298130-mRNA-1:cds;Parent=Msa1298130-mRNA-1
chr8_3 CDS 58827811 58828243 58827811 ID=Msa1298130-mRNA-1:cds;Parent=Msa1298130-mRNA-1
chr8_3 CDS 58828633 58828705 58828633 ID=Msa1298130-mRNA-1:cds;Parent=Msa1298130-mRNA-1
chr8_3 CDS 58829334 58829437 58829334 ID=Msa1298130-mRNA-1:cds;Parent=Msa1298130-mRNA-1
chr8_3 CDS 58829601 58829787 58829601 ID=Msa1298130-mRNA-1:cds;Parent=Msa1298130-mRNA-1
chr8_3 CDS 58830169 58830280 58830169 ID=Msa1298130-mRNA-1:cds;Parent=Msa1298130-mRNA-1
chr8_3 CDS 58830470 58830771 58830470 ID=Msa1298130-mRNA-1:cds;Parent=Msa1298130-mRNA-1
chr8_3 three_prime_UTR 58830772 58831069 58830772 ID=Msa1298130-mRNA-1:three_prime_utr;Parent=Msa1298130-mRNA-1
chr8_3 three_prime_UTR 58831093 58831230 58831093 ID=Msa1298130-mRNA-1:three_prime_utr;Parent=Msa1298130-mRNA-1
chr8_3 three_prime_UTR 58831588 58831695 58831588 ID=Msa1298130-mRNA-1:three_prime_utr;Parent=Msa1298130-mRNA-1
Gene Sequence

>Msa1298130

ATGGGAAAACAAGGACCTTGCTTTCACTGTGGAGTTACAAGCACACCACTTTGGCGTAACGGGCCACCCGAGAAGCCAATTTTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTTTACATGCTCGGACAGATACTGTCGATTTTGAGGATCAGAGAGTTTCAAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTGAAATTGGTTAAACGAAAGCAGAACTATGATAATGCTTATGCTGCATCTGGATGGTTCACCCCTGAATATAATCAAGGATTCCAAAAGGCTGTCGATGAGGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGCGTTCAATTTGGCGGCACCGATGCTAGTGATTTGACAGGTCCTTCTCGGTCAGTAGTCTGGGATACTGCGGCGCCTTCAAAAAAGAGAACATGTGCCGGGCGTCTGAAGCATTCTTCTGTTGAAAAGCTCACACAAGACTTGTGTACTATTCTCCATGAACAACAGCAATCCTGTTTCTCTGCTTCTTCTGAAGAGGAACTTCTTTACGAAAGTGAAACTCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATAGCTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCGTGTTATGGTTCAATTCCCATGCTTAGTGATTACACTGGCATGAATTTCTCTTCTCAGGGAGTTGCAAAGGTCAGAAACTCTGCTGGCCCAAGACTGCAACAGGAGCAGCTTGTGTGGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCATCACTGTGCTCAATAGATTTAAATGATGTAGTGAACTACAAGGAGTTTTCAAGAAACTTGACAAATGAAGAGCAGCACCAATTACTGAAGTATCTCCCCGTGGTTGATACTGCTAAATTTCCTGATAGCATTAAAATTATGTTCGATAGCTTTCAATTCAAGGAGGAGTTAACTTATTTTCAGAAACTTCTCGAGGAAGGTGTCTTTGATATCTCTTTGTTTGGAGGAGACCCTGAAGACTGCAAGACATCTAAAAGGCTTGCATTATCTAACTTGTCAAAGTCAAAATGTGTAGAACACTATAATTTTCTCAAGAAAGGTGGAAACAAAGCTGGAAAACGTAATGATATGGAATCTCCTGCCGTGGCATCAAGTAATGTTGCGAATGTTAAGAGATTGCGTGTCAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATAGTAAAACCTGGCACTGGTGGCAAAGAAGCTGTAGATGGCTCTAGCATCAGTCCGAAAAGCCTATTTGCATTTCCTCGCAATGGTGGCTTGCACATGCTGGATTCTTTAAACTTCGTTGATGAGAGTTCGGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTTCCACAGGCAGAGCTCCTGCTCCCAAATTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCAGTATACTCGCATGTTACTCGTCCTTGA

Protein sequence

>Msa1298130

MGKQGPCFHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTDTVDFEDQRVSRLKIVSLNKNKEVKLVKRKQNYDNAYAASGWFTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFGGTDASDLTGPSRSVVWDTAAPSKKRTCAGRLKHSSVEKLTQDLCTILHEQQQSCFSASSEEELLYESETPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGSIPMLSDYTGMNFSSQGVAKVRNSAGPRLQQEQLVWDKSQLEKLEVLGNHDSSLCSIDLNDVVNYKEFSRNLTNEEQHQLLKYLPVVDTAKFPDSIKIMFDSFQFKEELTYFQKLLEEGVFDISLFGGDPEDCKTSKRLALSNLSKSKCVEHYNFLKKGGNKAGKRNDMESPAVASSNVANVKRLRVSQNQNFPELKTTMRSPKRVIVKPGTGGKEAVDGSSISPKSLFAFPRNGGLHMLDSLNFVDESSDQDLLLEFPSNNSFPQAELLLPNSSLVAQGSTSSSSVYSHVTRP*