Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299060 | XP_013457839.1 | 81.439 | 264 | 40 | 3 | 1 | 264 | 1 | 255 | 8.01e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299060 | A0A072V1C0 | 81.439 | 264 | 40 | 3 | 1 | 264 | 1 | 255 | 3.83e-152 | 434 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1299060 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299060 | MtrunA17_Chr4g0059631 | 81.439 | 264 | 40 | 3 | 1 | 264 | 1 | 255 | 7.37e-156 | 434 |
| Msa1299060 | MtrunA17_Chr4g0022641 | 53.710 | 283 | 99 | 3 | 1 | 264 | 1 | 270 | 1.27e-97 | 291 |
| Msa1299060 | MtrunA17_Chr1g0212471 | 58.788 | 165 | 66 | 1 | 1 | 163 | 1 | 165 | 3.23e-61 | 191 |
| Msa1299060 | MtrunA17_Chr2g0303981 | 48.993 | 149 | 74 | 2 | 3 | 150 | 5 | 152 | 7.35e-44 | 147 |
| Msa1299060 | MtrunA17_Chr1g0212151 | 42.000 | 150 | 84 | 1 | 1 | 147 | 1 | 150 | 8.91e-35 | 127 |
| Msa1299060 | MtrunA17_Chr6g0457851 | 37.255 | 153 | 93 | 1 | 1 | 150 | 11 | 163 | 1.47e-34 | 127 |
| Msa1299060 | MtrunA17_Chr6g0449851 | 39.216 | 153 | 90 | 1 | 1 | 150 | 1 | 153 | 3.65e-34 | 125 |
| Msa1299060 | MtrunA17_Chr6g0449861 | 35.948 | 153 | 95 | 1 | 1 | 150 | 9 | 161 | 1.63e-28 | 111 |
| Msa1299060 | MtrunA17_Chr3g0107381 | 31.618 | 136 | 87 | 4 | 1 | 135 | 1 | 131 | 1.75e-14 | 70.9 |
| Msa1299060 | MtrunA17_Chr2g0283941 | 23.043 | 230 | 163 | 4 | 1 | 218 | 1 | 228 | 7.46e-14 | 69.3 |
| Msa1299060 | MtrunA17_Chr5g0432691 | 31.132 | 106 | 69 | 3 | 1 | 105 | 1 | 103 | 5.62e-11 | 59.7 |
| Msa1299060 | MtrunA17_Chr3g0107461 | 30.252 | 119 | 75 | 4 | 1 | 114 | 1 | 116 | 9.25e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299060 | AT5G55690.1 | 32.000 | 175 | 103 | 4 | 1 | 166 | 1 | 168 | 2.87e-17 | 79.7 |
| Msa1299060 | AT5G55690.2 | 32.000 | 175 | 103 | 4 | 1 | 166 | 1 | 168 | 2.87e-17 | 79.7 |
| Msa1299060 | AT1G22590.2 | 35.849 | 106 | 64 | 3 | 1 | 105 | 1 | 103 | 5.41e-11 | 60.1 |
Find 44 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACACTTGTAAGGTCTTC+TGG | 0.270047 | 8_3:-60050813 | None:intergenic |
| AAGTTGTTAATCCTGATTAT+AGG | 0.299671 | 8_3:+60051326 | Msa1299060:CDS |
| TCCTGAGATATTTGATGTTA+AGG | 0.348371 | 8_3:+60050878 | Msa1299060:CDS |
| GCACTTTGGATGTATTTCAT+AGG | 0.357011 | 8_3:-60050651 | None:intergenic |
| ATCCCACTAAGTTGGTTTGA+TGG | 0.398405 | 8_3:-60051175 | None:intergenic |
| ACCATCTCACTTGTATAATC+AGG | 0.418843 | 8_3:-60051226 | None:intergenic |
| GATCAACAAGTTGACTAAGT+TGG | 0.422061 | 8_3:-60051405 | None:intergenic |
| GCAAGGAGTTTACACTTGTA+AGG | 0.440354 | 8_3:-60050821 | None:intergenic |
| ACAATCTCACTCCTATAATC+AGG | 0.445065 | 8_3:-60051337 | None:intergenic |
| TATAATCAGGATTAACTACT+TGG | 0.446120 | 8_3:-60051213 | None:intergenic |
| AGTTGGTTTGCTGATGAACT+TGG | 0.448642 | 8_3:-60051388 | None:intergenic |
| TCTCCACAATCCCACTAAGT+TGG | 0.470552 | 8_3:-60051183 | None:intergenic |
| CTAAAATGTGGATGCCAAGT+TGG | 0.479466 | 8_3:-60050978 | None:intergenic |
| TAAAATGTGGATGCCAAGTT+GGG | 0.491000 | 8_3:-60050977 | None:intergenic |
| GCTTGCTTTATTGTGTATGA+TGG | 0.491871 | 8_3:+60050759 | Msa1299060:CDS |
| TCATCATCAAACCAACTTAG+TGG | 0.501564 | 8_3:+60051283 | Msa1299060:CDS |
| TCCTTAACATCAAATATCTC+AGG | 0.501707 | 8_3:-60050879 | None:intergenic |
| CTTTGAAAATAAGATAGAAA+AGG | 0.507369 | 8_3:+60050905 | Msa1299060:CDS |
| TCTCCACAAGCCCACTAAGT+TGG | 0.508925 | 8_3:-60051294 | None:intergenic |
| TTGTAAGAAGTCTGGAGCAA+AGG | 0.512867 | 8_3:+60050737 | Msa1299060:CDS |
| AACTTGTTGATCTTGATGAC+TGG | 0.515181 | 8_3:+60051416 | Msa1299060:CDS |
| TGATTATAGGAGTGAGATTG+TGG | 0.520372 | 8_3:+60051339 | Msa1299060:CDS |
| ATTGTGGATTTCACTAGTCT+TGG | 0.527589 | 8_3:+60051355 | Msa1299060:CDS |
| TCACCATCAAACCAACTTAG+TGG | 0.529150 | 8_3:+60051172 | Msa1299060:CDS |
| AGTTGGTTTGATGATGAACT+AGG | 0.530891 | 8_3:-60051277 | None:intergenic |
| TATAATCAGGATTAACAACT+TGG | 0.536057 | 8_3:-60051324 | None:intergenic |
| AAACCAACTTAGTGGGCTTG+TGG | 0.552156 | 8_3:+60051291 | Msa1299060:CDS |
| CATCATCAAACCAACTTAGT+GGG | 0.554520 | 8_3:+60051284 | Msa1299060:CDS |
| AAACCAACTTAGTGGGATTG+TGG | 0.556734 | 8_3:+60051180 | Msa1299060:CDS |
| AGGTCTTCTGGCCATGTCGT+AGG | 0.557005 | 8_3:-60050801 | None:intergenic |
| CACCATCAAACCAACTTAGT+GGG | 0.566836 | 8_3:+60051173 | Msa1299060:CDS |
| TCATCCAAGTTACTAAAATG+TGG | 0.567439 | 8_3:-60050990 | None:intergenic |
| ATGGTGGATTTCACAAGTCT+TGG | 0.570027 | 8_3:+60051244 | Msa1299060:CDS |
| TGGTTTGCTGATGAACTTGG+AGG | 0.570787 | 8_3:-60051385 | None:intergenic |
| ACTTTCAAACAAAGAAAGCA+TGG | 0.571291 | 8_3:+60050690 | Msa1299060:CDS |
| TCACTAAGATCTACCCAACT+TGG | 0.574367 | 8_3:+60050964 | Msa1299060:CDS |
| ATTCTGATACTCTTGAAGCA+AGG | 0.580425 | 8_3:-60050838 | None:intergenic |
| TGATTATACAAGTGAGATGG+TGG | 0.591946 | 8_3:+60051228 | Msa1299060:CDS |
| TCCTGATTATACAAGTGAGA+TGG | 0.603434 | 8_3:+60051225 | Msa1299060:CDS |
| AAACAAAGATTAACAAAGTG+CGG | 0.604618 | 8_3:+60050931 | Msa1299060:CDS |
| TGGATAAATCAACTAGATGA+TGG | 0.621105 | 8_3:+60051436 | Msa1299060:CDS |
| TGGTTTGATGATGAACTAGG+AGG | 0.662339 | 8_3:-60051274 | None:intergenic |
| ATAATATTGAACCTACGACA+TGG | 0.717032 | 8_3:+60050790 | Msa1299060:CDS |
| AAGTTGGGTAGATCTTAGTG+AGG | 0.717752 | 8_3:-60050962 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTGAAAATAAGATAGAAA+AGG | + | chr8_3:60050905-60050924 | Msa1299060:CDS | 20.0% |
| !!! | CTTTGAAAATAAGATAGAAA+AGG | + | chr8_3:60050905-60050924 | Msa1299060:CDS | 20.0% |
| ! | AAACAAAGATTAACAAAGTG+CGG | + | chr8_3:60050931-60050950 | Msa1299060:CDS | 25.0% |
| !!! | ATGATTGATTTTTCTGATCT+TGG | + | chr8_3:60051131-60051150 | Msa1299060:intron | 25.0% |
| ! | TATAATCAGGATTAACTACT+TGG | - | chr8_3:60051216-60051235 | None:intergenic | 25.0% |
| ! | TATAATCAGGATTAACAACT+TGG | - | chr8_3:60051327-60051346 | None:intergenic | 25.0% |
| ! | AAGTTGTTAATCCTGATTAT+AGG | + | chr8_3:60051326-60051345 | Msa1299060:CDS | 25.0% |
| ! | AAACAAAGATTAACAAAGTG+CGG | + | chr8_3:60050931-60050950 | Msa1299060:CDS | 25.0% |
| !!! | ATGATTGATTTTTCTGATCT+TGG | + | chr8_3:60051131-60051150 | Msa1299060:intron | 25.0% |
| ! | TATAATCAGGATTAACTACT+TGG | - | chr8_3:60051216-60051235 | None:intergenic | 25.0% |
| ! | TATAATCAGGATTAACAACT+TGG | - | chr8_3:60051327-60051346 | None:intergenic | 25.0% |
| ! | AAGTTGTTAATCCTGATTAT+AGG | + | chr8_3:60051326-60051345 | Msa1299060:CDS | 25.0% |
| ACTTTCAAACAAAGAAAGCA+TGG | + | chr8_3:60050690-60050709 | Msa1299060:CDS | 30.0% | |
| ! | TCTGAATTTTGTAAGAAGTC+TGG | + | chr8_3:60050729-60050748 | Msa1299060:CDS | 30.0% |
| ATAATATTGAACCTACGACA+TGG | + | chr8_3:60050790-60050809 | Msa1299060:CDS | 30.0% | |
| TCCTGAGATATTTGATGTTA+AGG | + | chr8_3:60050878-60050897 | Msa1299060:CDS | 30.0% | |
| TCCTTAACATCAAATATCTC+AGG | - | chr8_3:60050882-60050901 | None:intergenic | 30.0% | |
| TCATCCAAGTTACTAAAATG+TGG | - | chr8_3:60050993-60051012 | None:intergenic | 30.0% | |
| ACAAATAGAAACTAGCACTT+TGG | + | chr8_3:60051097-60051116 | Msa1299060:intron | 30.0% | |
| TGGATAAATCAACTAGATGA+TGG | + | chr8_3:60051436-60051455 | Msa1299060:CDS | 30.0% | |
| TCTTTCCAAAAAAACTCATC+AGG | - | chr8_3:60051484-60051503 | None:intergenic | 30.0% | |
| ACTTTCAAACAAAGAAAGCA+TGG | + | chr8_3:60050690-60050709 | Msa1299060:CDS | 30.0% | |
| ! | TCTGAATTTTGTAAGAAGTC+TGG | + | chr8_3:60050729-60050748 | Msa1299060:CDS | 30.0% |
| ATAATATTGAACCTACGACA+TGG | + | chr8_3:60050790-60050809 | Msa1299060:CDS | 30.0% | |
| TCCTGAGATATTTGATGTTA+AGG | + | chr8_3:60050878-60050897 | Msa1299060:CDS | 30.0% | |
| TCCTTAACATCAAATATCTC+AGG | - | chr8_3:60050882-60050901 | None:intergenic | 30.0% | |
| TCATCCAAGTTACTAAAATG+TGG | - | chr8_3:60050993-60051012 | None:intergenic | 30.0% | |
| ACAAATAGAAACTAGCACTT+TGG | + | chr8_3:60051097-60051116 | Msa1299060:intron | 30.0% | |
| TGGATAAATCAACTAGATGA+TGG | + | chr8_3:60051436-60051455 | Msa1299060:CDS | 30.0% | |
| TCTTTCCAAAAAAACTCATC+AGG | - | chr8_3:60051484-60051503 | None:intergenic | 30.0% | |
| GCACTTTGGATGTATTTCAT+AGG | - | chr8_3:60050654-60050673 | None:intergenic | 35.0% | |
| ! | GCTTGCTTTATTGTGTATGA+TGG | + | chr8_3:60050759-60050778 | Msa1299060:CDS | 35.0% |
| TTTACACTTGTAAGGTCTTC+TGG | - | chr8_3:60050816-60050835 | None:intergenic | 35.0% | |
| ATTCTGATACTCTTGAAGCA+AGG | - | chr8_3:60050841-60050860 | None:intergenic | 35.0% | |
| TAAAATGTGGATGCCAAGTT+GGG | - | chr8_3:60050980-60050999 | None:intergenic | 35.0% | |
| !! | GCATCCACATTTTAGTAACT+TGG | + | chr8_3:60050986-60051005 | Msa1299060:CDS | 35.0% |
| !! | TTGGTTTGATGGTGAACTAT+AGG | - | chr8_3:60051167-60051186 | None:intergenic | 35.0% |
| TCCTGATTATACAAGTGAGA+TGG | + | chr8_3:60051225-60051244 | Msa1299060:CDS | 35.0% | |
| ACCATCTCACTTGTATAATC+AGG | - | chr8_3:60051229-60051248 | None:intergenic | 35.0% | |
| TGATTATACAAGTGAGATGG+TGG | + | chr8_3:60051228-60051247 | Msa1299060:CDS | 35.0% | |
| !! | AGTTGGTTTGATGATGAACT+AGG | - | chr8_3:60051280-60051299 | None:intergenic | 35.0% |
| TCATCATCAAACCAACTTAG+TGG | + | chr8_3:60051283-60051302 | Msa1299060:CDS | 35.0% | |
| CATCATCAAACCAACTTAGT+GGG | + | chr8_3:60051284-60051303 | Msa1299060:CDS | 35.0% | |
| ACAATCTCACTCCTATAATC+AGG | - | chr8_3:60051340-60051359 | None:intergenic | 35.0% | |
| TGATTATAGGAGTGAGATTG+TGG | + | chr8_3:60051339-60051358 | Msa1299060:CDS | 35.0% | |
| ! | ATTGTGGATTTCACTAGTCT+TGG | + | chr8_3:60051355-60051374 | Msa1299060:CDS | 35.0% |
| ! | GATCAACAAGTTGACTAAGT+TGG | - | chr8_3:60051408-60051427 | None:intergenic | 35.0% |
| !! | AACTTGTTGATCTTGATGAC+TGG | + | chr8_3:60051416-60051435 | Msa1299060:CDS | 35.0% |
| !!! | GTCAACCTGATGAGTTTTTT+TGG | + | chr8_3:60051476-60051495 | Msa1299060:CDS | 35.0% |
| GCACTTTGGATGTATTTCAT+AGG | - | chr8_3:60050654-60050673 | None:intergenic | 35.0% | |
| ! | GCTTGCTTTATTGTGTATGA+TGG | + | chr8_3:60050759-60050778 | Msa1299060:CDS | 35.0% |
| TTTACACTTGTAAGGTCTTC+TGG | - | chr8_3:60050816-60050835 | None:intergenic | 35.0% | |
| ATTCTGATACTCTTGAAGCA+AGG | - | chr8_3:60050841-60050860 | None:intergenic | 35.0% | |
| TAAAATGTGGATGCCAAGTT+GGG | - | chr8_3:60050980-60050999 | None:intergenic | 35.0% | |
| !! | GCATCCACATTTTAGTAACT+TGG | + | chr8_3:60050986-60051005 | Msa1299060:CDS | 35.0% |
| !! | TTGGTTTGATGGTGAACTAT+AGG | - | chr8_3:60051167-60051186 | None:intergenic | 35.0% |
| TCCTGATTATACAAGTGAGA+TGG | + | chr8_3:60051225-60051244 | Msa1299060:CDS | 35.0% | |
| ACCATCTCACTTGTATAATC+AGG | - | chr8_3:60051229-60051248 | None:intergenic | 35.0% | |
| TGATTATACAAGTGAGATGG+TGG | + | chr8_3:60051228-60051247 | Msa1299060:CDS | 35.0% | |
| !! | AGTTGGTTTGATGATGAACT+AGG | - | chr8_3:60051280-60051299 | None:intergenic | 35.0% |
| TCATCATCAAACCAACTTAG+TGG | + | chr8_3:60051283-60051302 | Msa1299060:CDS | 35.0% | |
| CATCATCAAACCAACTTAGT+GGG | + | chr8_3:60051284-60051303 | Msa1299060:CDS | 35.0% | |
| ACAATCTCACTCCTATAATC+AGG | - | chr8_3:60051340-60051359 | None:intergenic | 35.0% | |
| TGATTATAGGAGTGAGATTG+TGG | + | chr8_3:60051339-60051358 | Msa1299060:CDS | 35.0% | |
| ! | ATTGTGGATTTCACTAGTCT+TGG | + | chr8_3:60051355-60051374 | Msa1299060:CDS | 35.0% |
| ! | GATCAACAAGTTGACTAAGT+TGG | - | chr8_3:60051408-60051427 | None:intergenic | 35.0% |
| !! | AACTTGTTGATCTTGATGAC+TGG | + | chr8_3:60051416-60051435 | Msa1299060:CDS | 35.0% |
| !!! | GTCAACCTGATGAGTTTTTT+TGG | + | chr8_3:60051476-60051495 | Msa1299060:CDS | 35.0% |
| ! | TTTTGCGAGATTTCGCACTT+TGG | - | chr8_3:60050668-60050687 | None:intergenic | 40.0% |
| ! | TTGTAAGAAGTCTGGAGCAA+AGG | + | chr8_3:60050737-60050756 | Msa1299060:CDS | 40.0% |
| GCAAGGAGTTTACACTTGTA+AGG | - | chr8_3:60050824-60050843 | None:intergenic | 40.0% | |
| AAGTTGGGTAGATCTTAGTG+AGG | - | chr8_3:60050965-60050984 | None:intergenic | 40.0% | |
| TCACTAAGATCTACCCAACT+TGG | + | chr8_3:60050964-60050983 | Msa1299060:CDS | 40.0% | |
| CTAAAATGTGGATGCCAAGT+TGG | - | chr8_3:60050981-60051000 | None:intergenic | 40.0% | |
| !! | GTTTGATGGTGAACTATAGG+AGG | - | chr8_3:60051164-60051183 | None:intergenic | 40.0% |
| TCACCATCAAACCAACTTAG+TGG | + | chr8_3:60051172-60051191 | Msa1299060:CDS | 40.0% | |
| CACCATCAAACCAACTTAGT+GGG | + | chr8_3:60051173-60051192 | Msa1299060:CDS | 40.0% | |
| !! | ATCCCACTAAGTTGGTTTGA+TGG | - | chr8_3:60051178-60051197 | None:intergenic | 40.0% |
| AAACCAACTTAGTGGGATTG+TGG | + | chr8_3:60051180-60051199 | Msa1299060:CDS | 40.0% | |
| !! | ATGGTGGATTTCACAAGTCT+TGG | + | chr8_3:60051244-60051263 | Msa1299060:CDS | 40.0% |
| !! | TGGTTTGATGATGAACTAGG+AGG | - | chr8_3:60051277-60051296 | None:intergenic | 40.0% |
| !! | AGTTGGTTTGCTGATGAACT+TGG | - | chr8_3:60051391-60051410 | None:intergenic | 40.0% |
| !! | TAGATGATGGTGTTTTGTGC+TGG | + | chr8_3:60051449-60051468 | Msa1299060:CDS | 40.0% |
| !! | AGATGATGGTGTTTTGTGCT+GGG | + | chr8_3:60051450-60051469 | Msa1299060:CDS | 40.0% |
| ! | TTTTGCGAGATTTCGCACTT+TGG | - | chr8_3:60050668-60050687 | None:intergenic | 40.0% |
| ! | TTGTAAGAAGTCTGGAGCAA+AGG | + | chr8_3:60050737-60050756 | Msa1299060:CDS | 40.0% |
| GCAAGGAGTTTACACTTGTA+AGG | - | chr8_3:60050824-60050843 | None:intergenic | 40.0% | |
| AAGTTGGGTAGATCTTAGTG+AGG | - | chr8_3:60050965-60050984 | None:intergenic | 40.0% | |
| TCACTAAGATCTACCCAACT+TGG | + | chr8_3:60050964-60050983 | Msa1299060:CDS | 40.0% | |
| CTAAAATGTGGATGCCAAGT+TGG | - | chr8_3:60050981-60051000 | None:intergenic | 40.0% | |
| !! | GTTTGATGGTGAACTATAGG+AGG | - | chr8_3:60051164-60051183 | None:intergenic | 40.0% |
| TCACCATCAAACCAACTTAG+TGG | + | chr8_3:60051172-60051191 | Msa1299060:CDS | 40.0% | |
| CACCATCAAACCAACTTAGT+GGG | + | chr8_3:60051173-60051192 | Msa1299060:CDS | 40.0% | |
| !! | ATCCCACTAAGTTGGTTTGA+TGG | - | chr8_3:60051178-60051197 | None:intergenic | 40.0% |
| AAACCAACTTAGTGGGATTG+TGG | + | chr8_3:60051180-60051199 | Msa1299060:CDS | 40.0% | |
| !! | ATGGTGGATTTCACAAGTCT+TGG | + | chr8_3:60051244-60051263 | Msa1299060:CDS | 40.0% |
| !! | TGGTTTGATGATGAACTAGG+AGG | - | chr8_3:60051277-60051296 | None:intergenic | 40.0% |
| !! | AGTTGGTTTGCTGATGAACT+TGG | - | chr8_3:60051391-60051410 | None:intergenic | 40.0% |
| !! | TAGATGATGGTGTTTTGTGC+TGG | + | chr8_3:60051449-60051468 | Msa1299060:CDS | 40.0% |
| !! | AGATGATGGTGTTTTGTGCT+GGG | + | chr8_3:60051450-60051469 | Msa1299060:CDS | 40.0% |
| TCTCCACAATCCCACTAAGT+TGG | - | chr8_3:60051186-60051205 | None:intergenic | 45.0% | |
| !! | AAACCAACTTAGTGGGCTTG+TGG | + | chr8_3:60051291-60051310 | Msa1299060:CDS | 45.0% |
| !! | TGGTTTGCTGATGAACTTGG+AGG | - | chr8_3:60051388-60051407 | None:intergenic | 45.0% |
| TCTCCACAATCCCACTAAGT+TGG | - | chr8_3:60051186-60051205 | None:intergenic | 45.0% | |
| !! | AAACCAACTTAGTGGGCTTG+TGG | + | chr8_3:60051291-60051310 | Msa1299060:CDS | 45.0% |
| !! | TGGTTTGCTGATGAACTTGG+AGG | - | chr8_3:60051388-60051407 | None:intergenic | 45.0% |
| TCTCCACAAGCCCACTAAGT+TGG | - | chr8_3:60051297-60051316 | None:intergenic | 50.0% | |
| TCTCCACAAGCCCACTAAGT+TGG | - | chr8_3:60051297-60051316 | None:intergenic | 50.0% | |
| AGGTCTTCTGGCCATGTCGT+AGG | - | chr8_3:60050804-60050823 | None:intergenic | 55.0% | |
| AGGTCTTCTGGCCATGTCGT+AGG | - | chr8_3:60050804-60050823 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 60050633 | 60051516 | 60050633 | ID=Msa1299060;Name=Msa1299060 |
| chr8_3 | mRNA | 60050633 | 60051516 | 60050633 | ID=Msa1299060-mRNA-1;Parent=Msa1299060;Name=Msa1299060-mRNA-1;_AED=0.27;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|264 |
| chr8_3 | exon | 60050633 | 60051081 | 60050633 | ID=Msa1299060-mRNA-1:exon:17453;Parent=Msa1299060-mRNA-1 |
| chr8_3 | exon | 60051171 | 60051516 | 60051171 | ID=Msa1299060-mRNA-1:exon:17454;Parent=Msa1299060-mRNA-1 |
| chr8_3 | CDS | 60050633 | 60051081 | 60050633 | ID=Msa1299060-mRNA-1:cds;Parent=Msa1299060-mRNA-1 |
| chr8_3 | CDS | 60051171 | 60051516 | 60051171 | ID=Msa1299060-mRNA-1:cds;Parent=Msa1299060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
