AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1299410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299410 MtrunA17_Chr4g0060031 94.379 338 14 3 1 334 1 337 0.0 592
Msa1299410 MtrunA17_Chr5g0415941 46.802 344 151 11 1 332 1 324 4.56e-83 254
Msa1299410 MtrunA17_Chr8g0362751 41.818 330 129 10 15 334 10 286 9.87e-58 188
Msa1299410 MtrunA17_Chr6g0450991 43.952 248 103 7 31 275 14 228 1.16e-47 162
Msa1299410 MtrunA17_Chr8g0362151 45.550 191 70 6 28 199 11 186 2.40e-39 140
Msa1299410 MtrunA17_Chr5g0416391 52.083 144 51 2 48 187 40 169 3.25e-38 137
Msa1299410 MtrunA17_Chr3g0123691 58.559 111 46 0 86 196 51 161 2.17e-36 133
Msa1299410 MtrunA17_Chr6g0453021 46.707 167 73 5 49 204 51 212 5.79e-36 131
Msa1299410 MtrunA17_Chr3g0119291 62.857 105 39 0 94 198 58 162 2.01e-35 129
Msa1299410 MtrunA17_Chr8g0381741 60.784 102 40 0 94 195 53 154 4.97e-35 129
Msa1299410 MtrunA17_Chr7g0217111 44.211 190 92 6 81 257 64 252 6.93e-34 125
Msa1299410 MtrunA17_Chr7g0265521 48.148 135 50 4 94 228 62 176 6.64e-30 114
Msa1299410 MtrunA17_Chr1g0179581 57.426 101 35 2 84 184 18 110 1.04e-28 107
Msa1299410 MtrunA17_Chr3g0127511 55.789 95 42 0 97 191 40 134 2.55e-28 110
Msa1299410 MtrunA17_Chr8g0346251 47.778 90 47 0 102 191 48 137 3.02e-24 99.4
Msa1299410 MtrunA17_Chr5g0403701 45.872 109 52 1 95 203 53 154 1.09e-21 91.3
Msa1299410 MtrunA17_Chr5g0403691 49.091 110 54 2 95 203 53 161 2.17e-21 90.9
Msa1299410 MtrunA17_Chr4g0055851 50.926 108 44 2 80 187 107 205 5.71e-21 90.9
Msa1299410 MtrunA17_Chr1g0175651 47.788 113 43 2 75 187 143 239 1.32e-18 84.7
Msa1299410 MtrunA17_Chr5g0399491 48.739 119 46 3 75 187 112 221 2.72e-18 84.0
Msa1299410 MtrunA17_Chr2g0308611 50.000 90 45 0 93 182 198 287 3.73e-18 84.0
Msa1299410 MtrunA17_Chr7g0258831 47.115 104 53 1 79 182 146 247 4.22e-18 83.2
Msa1299410 MtrunA17_Chr8g0335131 51.613 93 38 2 95 187 146 231 1.84e-17 81.6
Msa1299410 MtrunA17_Chr4g0054421 46.154 104 49 1 84 187 116 212 2.35e-17 80.9
Msa1299410 MtrunA17_Chr1g0151971 42.727 110 52 1 73 182 119 217 3.01e-16 77.8
Msa1299410 MtrunA17_Chr5g0400781 44.792 96 53 0 87 182 115 210 6.08e-16 76.6
Msa1299410 MtrunA17_Chr4g0044091 45.161 93 44 1 95 187 65 150 1.88e-14 71.2
Msa1299410 MtrunA17_Chr3g0135331 48.611 72 37 0 95 166 145 216 1.98e-14 72.8
Msa1299410 MtrunA17_Chr4g0071411 44.444 90 43 1 98 187 91 173 5.18e-14 70.5
Msa1299410 MtrunA17_Chr2g0299031 40.909 88 52 0 95 182 82 169 1.39e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299410 AT3G01470.1 45.205 219 88 6 52 267 32 221 1.49e-44 154
Msa1299410 AT4G40060.1 41.379 261 132 8 44 300 4 247 1.13e-40 144
Msa1299410 AT3G01220.1 59.130 115 43 1 94 208 86 196 2.87e-36 132
Msa1299410 AT2G22430.1 50.000 154 71 2 44 191 5 158 3.33e-36 133
Msa1299410 AT5G15150.1 65.957 94 32 0 94 187 114 207 5.93e-36 132
Msa1299410 AT5G65310.2 62.626 99 37 0 93 191 52 150 2.49e-35 130
Msa1299410 AT5G65310.1 62.626 99 37 0 93 191 70 168 2.98e-35 130
Msa1299410 AT1G69780.1 54.098 122 51 1 83 199 73 194 5.94e-35 129
Msa1299410 AT1G27045.1 44.134 179 80 4 23 200 14 173 5.76e-33 122
Msa1299410 AT1G26960.1 54.237 118 53 1 74 190 49 166 1.04e-31 119
Msa1299410 AT1G27045.4 45.181 166 71 4 23 187 14 160 4.49e-31 118
Msa1299410 AT1G27045.5 57.692 104 44 0 95 198 25 128 4.29e-30 113
Msa1299410 AT1G27045.3 57.692 104 44 0 95 198 25 128 4.29e-30 113
Msa1299410 AT1G27045.2 57.692 104 44 0 95 198 17 120 5.15e-30 113
Msa1299410 AT2G46680.1 48.148 108 56 0 91 198 28 135 1.22e-27 108
Msa1299410 AT2G18550.1 47.368 133 55 3 65 197 39 156 1.30e-27 108
Msa1299410 AT3G61890.1 51.485 101 48 1 98 198 33 132 5.34e-27 106
Msa1299410 AT2G46680.2 52.688 93 44 0 91 183 28 120 4.04e-26 105
Msa1299410 AT4G36740.2 50.485 103 44 1 95 197 56 151 1.82e-25 102
Msa1299410 AT4G36740.1 50.485 103 44 1 95 197 55 150 1.90e-25 102
Msa1299410 AT5G03790.1 45.528 123 54 3 95 211 77 192 3.00e-25 102
Msa1299410 AT2G36610.1 44.531 128 54 3 84 203 60 178 3.58e-25 100
Msa1299410 AT5G03790.2 53.763 93 36 1 95 187 77 162 4.60e-25 100
Msa1299410 AT5G66700.1 48.454 97 43 1 95 191 71 160 1.76e-22 94.4
Msa1299410 AT5G06710.1 48.624 109 40 2 79 187 183 275 1.29e-18 85.9
Msa1299410 AT3G60390.1 46.281 121 54 3 67 187 138 247 1.69e-18 85.1
Msa1299410 AT4G16780.1 46.018 113 46 2 75 187 117 214 3.96e-18 83.6
Msa1299410 AT5G47370.1 48.077 104 47 1 84 187 119 215 7.18e-18 82.8
Msa1299410 AT5G53980.1 46.667 90 48 0 95 184 11 100 7.25e-18 80.1
Msa1299410 AT2G44910.1 51.613 93 38 1 95 187 163 248 1.40e-17 82.4
Msa1299410 AT4G17460.1 47.619 105 48 1 83 187 123 220 1.45e-17 82.0
Msa1299410 AT2G01430.1 43.363 113 50 3 80 187 121 224 1.21e-15 76.3
Msa1299410 AT2G22800.1 43.750 96 54 0 87 182 105 200 1.73e-15 75.9
Msa1299410 AT4G37790.1 44.762 105 51 2 83 187 114 211 4.16e-15 74.7
Msa1299410 AT5G06710.4 54.412 68 22 1 79 146 183 241 1.62e-13 70.1
Msa1299410 AT2G01430.2 47.945 73 31 2 80 147 121 191 1.47e-12 66.6
Msa1299410 AT1G70920.1 43.011 93 46 1 95 187 69 154 1.91e-11 63.2
Msa1299410 AT1G70920.2 43.011 93 46 1 95 187 39 124 2.23e-11 62.4

Find 103 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAAGAATTAATGCTTTC+TGG 0.113684 8_3:-60558395 Msa1299410:three_prime_UTR
CTCACTCACTTTGCACAAAA+AGG 0.203350 8_3:+60558582 None:intergenic
TAATTTACAATGCAACAAAA+TGG 0.203752 8_3:+60558445 None:intergenic
TCTTCTTCTCCTTCTTTCTT+TGG 0.203770 8_3:-60560263 Msa1299410:intron
AGCCTCAACAATTGACAATT+TGG 0.241624 8_3:+60558968 None:intergenic
TTGTAAATTAATGAAACTTT+TGG 0.268912 8_3:-60558432 Msa1299410:three_prime_UTR
TACAAGAGCCACACCCATTT+CGG 0.288630 8_3:+60558493 None:intergenic
TGAGAGACGCCGTTTCTTCT+CGG 0.306253 8_3:+60559753 None:intergenic
ATTTCATTTCATACCCGAAA+TGG 0.312835 8_3:-60558507 Msa1299410:three_prime_UTR
TTCATATTTGAAATATTTGC+AGG 0.321059 8_3:+60560365 None:intergenic
TTGTAGCTATATAGCTATTA+TGG 0.322660 8_3:-60560483 Msa1299410:five_prime_UTR
ATCATCAAGCTCTTTGGCCT+TGG 0.324405 8_3:-60558686 Msa1299410:CDS
ACAAGAGCCACACCCATTTC+GGG 0.325705 8_3:+60558494 None:intergenic
TTGAATAGGTTCAAGATCTA+TGG 0.343669 8_3:-60559884 Msa1299410:intron
AGCCACGGCAAGTTGCTATT+TGG 0.343826 8_3:-60559636 Msa1299410:CDS
TTCAGCAAGGAGTGACATAT+TGG 0.347228 8_3:-60558913 Msa1299410:CDS
TGTCTTCTTCATCTTGTGAT+AGG 0.364063 8_3:+60558808 None:intergenic
CATGATAATTCATCAAGTTA+TGG 0.374938 8_3:-60558726 Msa1299410:CDS
AATTAAAGATCTAAGACTTA+TGG 0.375155 8_3:+60560524 None:intergenic
AAGATCATCATCAAGCTCTT+TGG 0.376736 8_3:-60558692 Msa1299410:CDS
ACCAAGGTCTTTAGCTAGCT+TGG 0.382164 8_3:+60559663 None:intergenic
AATTTACAATGCAACAAAAT+GGG 0.386090 8_3:+60558446 None:intergenic
GGATTTGATCTTGACGAAAA+CGG 0.405214 8_3:-60559808 Msa1299410:CDS
ACCAAAGGTTTATTCATTGT+TGG 0.412212 8_3:+60559017 None:intergenic
ATAATCCTTCTCAAGCTGTT+TGG 0.413395 8_3:+60559585 None:intergenic
TGAAACAAAGGAATTCTTGC+AGG 0.414573 8_3:-60559042 Msa1299410:CDS
GAAATGGGTGTGGCTCTTGT+AGG 0.419023 8_3:-60558491 Msa1299410:three_prime_UTR
GGAGGTGTGGGAACAACGGC+AGG 0.421932 8_3:+60560588 None:intergenic
ACCAACAATGAATAAACCTT+TGG 0.422093 8_3:-60559018 Msa1299410:CDS
AAGGAAGGAAAAGGTGCAAC+AGG 0.436032 8_3:-60559843 Msa1299410:CDS
TGATTTCAGTGATGTGGGAT+TGG 0.456744 8_3:+60560566 None:intergenic
ACCTTCTCAAAGAGAAAGAT+AGG 0.463134 8_3:-60559516 Msa1299410:CDS
GATTTCAGTGATGTGGGATT+GGG 0.463594 8_3:+60560567 None:intergenic
TGATGTGGGATTGGGAGGTG+TGG 0.470405 8_3:+60560575 None:intergenic
TTTCATTTCATACCCGAAAT+GGG 0.470838 8_3:-60558506 Msa1299410:three_prime_UTR
TATATAGCTACAAGCTAGCT+AGG 0.478244 8_3:+60560493 None:intergenic
AGACTTATGGCGGAAGAAGC+TGG 0.487077 8_3:+60560537 None:intergenic
AGGTGCAACAGGTCTTTCTT+CGG 0.489691 8_3:-60559832 Msa1299410:CDS
TTTGGTTGATTCAGTTTCTG+AGG 0.492605 8_3:-60559000 Msa1299410:CDS
AGAAAGAAGGAGAAGAAGAA+AGG 0.493447 8_3:+60560267 None:intergenic
GGTAGCAAGCCTAACTGAAA+AGG 0.493946 8_3:-60559111 Msa1299410:CDS
ACCTATCTTTCTCTTTGAGA+AGG 0.495244 8_3:+60559515 None:intergenic
AAGACCTTGGTTTGCAGCCA+CGG 0.500948 8_3:-60559651 Msa1299410:CDS
TTCAGTGATGTGGGATTGGG+AGG 0.501722 8_3:+60560570 None:intergenic
AAAGAGAATCAAACAAGAGA+TGG 0.506055 8_3:+60560685 None:intergenic
ATCCAAATTGTCAATTGTTG+AGG 0.508800 8_3:-60558970 Msa1299410:CDS
TGGCTCTTGTAGGATAGAAA+TGG 0.509467 8_3:-60558481 Msa1299410:three_prime_UTR
TTCATCAATCCGAGAAGAAA+CGG 0.510950 8_3:-60559762 Msa1299410:CDS
GACTCAATACAAAGTTTCAA+AGG 0.516349 8_3:+60560651 None:intergenic
TTGGTTGATTCAGTTTCTGA+GGG 0.528561 8_3:-60558999 Msa1299410:CDS
AATACAAAGTTTCAAAGGGA+GGG 0.529387 8_3:+60560656 None:intergenic
TCTTGAGAAAAGCTTTGAAG+AGG 0.530902 8_3:-60559713 Msa1299410:CDS
GATAACTAACCAAAGAAAGA+AGG 0.531472 8_3:+60560254 None:intergenic
ACTCAATACAAAGTTTCAAA+GGG 0.532890 8_3:+60560652 None:intergenic
GAAAGATAGGTTACAATCTG+AGG 0.533848 8_3:-60559503 Msa1299410:intron
TTCAAAACCGTCGTGCAAGA+TGG 0.537462 8_3:-60559612 Msa1299410:CDS
GATGATGATTTCAGTGATGT+GGG 0.538439 8_3:+60560561 None:intergenic
TTTCATACCCGAAATGGGTG+TGG 0.538493 8_3:-60558501 Msa1299410:three_prime_UTR
CCATTACTCCGATCAAAAGA+AGG 0.538684 8_3:+60560617 None:intergenic
ATACAAAGTTTCAAAGGGAG+GGG 0.542133 8_3:+60560657 None:intergenic
ATTTGAACATGAATATCAAT+CGG 0.545738 8_3:-60558832 Msa1299410:CDS
ACCAAGCTAGCTAAAGACCT+TGG 0.547629 8_3:-60559664 Msa1299410:CDS
GATGTGGGATTGGGAGGTGT+GGG 0.548439 8_3:+60560576 None:intergenic
GATTCAGTTTCTGAGGGTGA+AGG 0.550989 8_3:-60558993 Msa1299410:CDS
ATTTACAATGCAACAAAATG+GGG 0.551950 8_3:+60558447 None:intergenic
GAAAGGAAAAGAGAATCAAG+AGG 0.552633 8_3:+60560284 None:intergenic
AAAGTCAGAGAATGGCAAGT+TGG 0.554287 8_3:-60558534 Msa1299410:three_prime_UTR
TGCGTAATAAAGTCAGAGAA+TGG 0.558093 8_3:-60558542 Msa1299410:three_prime_UTR
ATATTCATGTTCAAATACAT+AGG 0.565080 8_3:+60558839 None:intergenic
TGCAACAGGTCTTTCTTCGG+AGG 0.566461 8_3:-60559829 Msa1299410:CDS
ACTGATGGAGTGTTAGAGAC+AGG 0.581498 8_3:-60558870 Msa1299410:CDS
GACAGCCCACGTTACACTGA+TGG 0.581501 8_3:-60558885 Msa1299410:CDS
TGATGATGATTTCAGTGATG+TGG 0.582510 8_3:+60560560 None:intergenic
AAGATGCTCAAGGAAGGAAA+AGG 0.583979 8_3:-60559852 Msa1299410:CDS
CTTGCCGTGGCTGCAAACCA+AGG 0.588928 8_3:+60559647 None:intergenic
GAAGAAACGGCGTCTCTCAG+TGG 0.590083 8_3:-60559749 Msa1299410:CDS
TTGATGAATTATCATGTGGC+GGG 0.592126 8_3:+60558733 None:intergenic
ATTGGGAGGTGTGGGAACAA+CGG 0.592789 8_3:+60560584 None:intergenic
CTTGATGAATTATCATGTGG+CGG 0.594488 8_3:+60558732 None:intergenic
CGAAAACGGAGATGATGAGA+TGG 0.597802 8_3:-60559794 Msa1299410:CDS
ATCAAGTTATGGATTTCAAG+AGG 0.600284 8_3:-60558715 Msa1299410:CDS
TGAATTATCATGTGGCGGGT+CGG 0.601580 8_3:+60558737 None:intergenic
ACAAGGTGAAAGTGAAACAA+AGG 0.601903 8_3:-60559054 Msa1299410:CDS
TTGAAGATATTAGTTCAGCA+AGG 0.615993 8_3:-60558926 Msa1299410:CDS
TGGTCTTCCATCTTGCACGA+CGG 0.616539 8_3:+60559605 None:intergenic
TAAAGATCTAAGACTTATGG+CGG 0.618418 8_3:+60560527 None:intergenic
GAAGACCAAACAGCTTGAGA+AGG 0.620125 8_3:-60559590 Msa1299410:CDS
CAAGAGGGAAAATTCAAACA+AGG 0.630062 8_3:-60559071 Msa1299410:CDS
CAATACAAAGTTTCAAAGGG+AGG 0.631773 8_3:+60560655 None:intergenic
CTCTTGTAGGATAGAAATGG+CGG 0.634642 8_3:-60558478 Msa1299410:three_prime_UTR
AACACTCCATCAGTGTAACG+TGG 0.635850 8_3:+60558879 None:intergenic
TAACTTGATGAATTATCATG+TGG 0.637883 8_3:+60558729 None:intergenic
AACCAAATAGCAACTTGCCG+TGG 0.641928 8_3:+60559634 None:intergenic
AGATACAGAGACAGAACTAG+TGG 0.648443 8_3:+60560726 None:intergenic
CATATCATTTAATAAGACCA+AGG 0.657999 8_3:+60558669 None:intergenic
GAGGTGTGGGAACAACGGCA+GGG 0.660019 8_3:+60560589 None:intergenic
AATCAACAACAAACTCCTCG+TGG 0.662080 8_3:-60560323 Msa1299410:CDS
ACTTGCAAGAGAGAAACAAG+AGG 0.662555 8_3:-60559087 Msa1299410:CDS
TCAGAAACTGAATCAACCAA+AGG 0.671154 8_3:+60559002 None:intergenic
CTTGCAAGAGAGAAACAAGA+GGG 0.688671 8_3:-60559086 Msa1299410:CDS
ACACTCCATCAGTGTAACGT+GGG 0.696078 8_3:+60558880 None:intergenic
ACAACAAGCTTGAACCAGAG+AGG 0.699556 8_3:-60559690 Msa1299410:CDS
TGTTGAGAAGAGTTTCCACG+AGG 0.738171 8_3:+60560308 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATATATATATATA+TGG - chr8_3:60558770-60558789 Msa1299410:CDS 0.0%
!! AATATATATATATATATATA+TGG - chr8_3:60558770-60558789 Msa1299410:CDS 0.0%
!! ATATATATATATATATATGG+CGG - chr8_3:60558773-60558792 Msa1299410:CDS 10.0%
!! ATATATATATATATATATGG+CGG - chr8_3:60558773-60558792 Msa1299410:CDS 10.0%
!!! ATTTTTTTCTATGAGAAAAA+TGG + chr8_3:60558412-60558431 None:intergenic 15.0%
!! TATATATATATATATATGGC+GGG - chr8_3:60558774-60558793 Msa1299410:CDS 15.0%
!!! GTTTCAAGATTTTAAATAAA+TGG - chr8_3:60559106-60559125 Msa1299410:CDS 15.0%
!!! ATGTAGTTTTAATAAAATAG+TGG - chr8_3:60559249-60559268 Msa1299410:intron 15.0%
!!! TTTTTGTTTTGTTTTTGAAT+AGG - chr8_3:60559286-60559305 Msa1299410:intron 15.0%
!!! TTGTAAATTAATGAAACTTT+TGG - chr8_3:60560752-60560771 Msa1299410:five_prime_UTR 15.0%
!!! ATTTTTTTCTATGAGAAAAA+TGG + chr8_3:60558412-60558431 None:intergenic 15.0%
!! TATATATATATATATATGGC+GGG - chr8_3:60558774-60558793 Msa1299410:CDS 15.0%
!!! GTTTCAAGATTTTAAATAAA+TGG - chr8_3:60559106-60559125 Msa1299410:CDS 15.0%
!!! ATGTAGTTTTAATAAAATAG+TGG - chr8_3:60559249-60559268 Msa1299410:intron 15.0%
!!! TTTTTGTTTTGTTTTTGAAT+AGG - chr8_3:60559286-60559305 Msa1299410:intron 15.0%
!!! TTGTAAATTAATGAAACTTT+TGG - chr8_3:60560752-60560771 Msa1299410:five_prime_UTR 15.0%
!!! AATTAAAGATCTAAGACTTA+TGG + chr8_3:60558663-60558682 None:intergenic 20.0%
!!! TTCATATTTGAAATATTTGC+AGG + chr8_3:60558822-60558841 None:intergenic 20.0%
!! TCTTTGATATTGTAAAAATG+CGG - chr8_3:60559011-60559030 Msa1299410:CDS 20.0%
!!! TCAAGATTTTAAATAAATGG+TGG - chr8_3:60559109-60559128 Msa1299410:CDS 20.0%
!! TTATAACATAATTCAGATCA+CGG - chr8_3:60559190-60559209 Msa1299410:intron 20.0%
!! ACATAAAATTCATGAAATTG+TGG - chr8_3:60559981-60560000 Msa1299410:intron 20.0%
!! ATATTCATGTTCAAATACAT+AGG + chr8_3:60560348-60560367 None:intergenic 20.0%
!! ATTTGAACATGAATATCAAT+CGG - chr8_3:60560352-60560371 Msa1299410:CDS 20.0%
!! AATTTACAATGCAACAAAAT+GGG + chr8_3:60560741-60560760 None:intergenic 20.0%
!! TAATTTACAATGCAACAAAA+TGG + chr8_3:60560742-60560761 None:intergenic 20.0%
!! TTAAAAGAATTAATGCTTTC+TGG - chr8_3:60560789-60560808 Msa1299410:five_prime_UTR 20.0%
!!! AATTAAAGATCTAAGACTTA+TGG + chr8_3:60558663-60558682 None:intergenic 20.0%
!!! TTCATATTTGAAATATTTGC+AGG + chr8_3:60558822-60558841 None:intergenic 20.0%
!! TCTTTGATATTGTAAAAATG+CGG - chr8_3:60559011-60559030 Msa1299410:CDS 20.0%
!!! TCAAGATTTTAAATAAATGG+TGG - chr8_3:60559109-60559128 Msa1299410:CDS 20.0%
!! TTATAACATAATTCAGATCA+CGG - chr8_3:60559190-60559209 Msa1299410:intron 20.0%
!! ACATAAAATTCATGAAATTG+TGG - chr8_3:60559981-60560000 Msa1299410:intron 20.0%
!! ATATTCATGTTCAAATACAT+AGG + chr8_3:60560348-60560367 None:intergenic 20.0%
!! ATTTGAACATGAATATCAAT+CGG - chr8_3:60560352-60560371 Msa1299410:CDS 20.0%
!! AATTTACAATGCAACAAAAT+GGG + chr8_3:60560741-60560760 None:intergenic 20.0%
!! TAATTTACAATGCAACAAAA+TGG + chr8_3:60560742-60560761 None:intergenic 20.0%
!! TTAAAAGAATTAATGCTTTC+TGG - chr8_3:60560789-60560808 Msa1299410:five_prime_UTR 20.0%
! ACTCAATACAAAGTTTCAAA+GGG + chr8_3:60558535-60558554 None:intergenic 25.0%
! TTGTAGCTATATAGCTATTA+TGG - chr8_3:60558701-60558720 Msa1299410:CDS 25.0%
!!! ATCAATGTTTTGATGTCTTT+AGG + chr8_3:60559038-60559057 None:intergenic 25.0%
! TTGTGATGTTTCAATAATAC+AGG - chr8_3:60560052-60560071 Msa1299410:intron 25.0%
!!! TCAAGTTTTGTAAAGATGTA+AGG + chr8_3:60560413-60560432 None:intergenic 25.0%
! TAACTTGATGAATTATCATG+TGG + chr8_3:60560458-60560477 None:intergenic 25.0%
! CATGATAATTCATCAAGTTA+TGG - chr8_3:60560458-60560477 Msa1299410:five_prime_UTR 25.0%
! CATATCATTTAATAAGACCA+AGG + chr8_3:60560518-60560537 None:intergenic 25.0%
! ATTTACAATGCAACAAAATG+GGG + chr8_3:60560740-60560759 None:intergenic 25.0%
! ACTCAATACAAAGTTTCAAA+GGG + chr8_3:60558535-60558554 None:intergenic 25.0%
! TTGTAGCTATATAGCTATTA+TGG - chr8_3:60558701-60558720 Msa1299410:CDS 25.0%
!!! ATCAATGTTTTGATGTCTTT+AGG + chr8_3:60559038-60559057 None:intergenic 25.0%
! TTGTGATGTTTCAATAATAC+AGG - chr8_3:60560052-60560071 Msa1299410:intron 25.0%
!!! TCAAGTTTTGTAAAGATGTA+AGG + chr8_3:60560413-60560432 None:intergenic 25.0%
! TAACTTGATGAATTATCATG+TGG + chr8_3:60560458-60560477 None:intergenic 25.0%
! CATGATAATTCATCAAGTTA+TGG - chr8_3:60560458-60560477 Msa1299410:five_prime_UTR 25.0%
! CATATCATTTAATAAGACCA+AGG + chr8_3:60560518-60560537 None:intergenic 25.0%
! ATTTACAATGCAACAAAATG+GGG + chr8_3:60560740-60560759 None:intergenic 25.0%
AAAGAGAATCAAACAAGAGA+TGG + chr8_3:60558502-60558521 None:intergenic 30.0%
AATACAAAGTTTCAAAGGGA+GGG + chr8_3:60558531-60558550 None:intergenic 30.0%
GACTCAATACAAAGTTTCAA+AGG + chr8_3:60558536-60558555 None:intergenic 30.0%
! TAAAGATCTAAGACTTATGG+CGG + chr8_3:60558660-60558679 None:intergenic 30.0%
! ATATATATATATATGGCGGG+TGG - chr8_3:60558777-60558796 Msa1299410:CDS 30.0%
!! TATATATATATATGGCGGGT+GGG - chr8_3:60558778-60558797 Msa1299410:CDS 30.0%
GATAACTAACCAAAGAAAGA+AGG + chr8_3:60558933-60558952 None:intergenic 30.0%
! AGTTTTTGATATCTCTGCAA+CGG + chr8_3:60559169-60559188 None:intergenic 30.0%
TTGAATAGGTTCAAGATCTA+TGG - chr8_3:60559300-60559319 Msa1299410:intron 30.0%
TGTGGTTCACATAAAACTAT+TGG - chr8_3:60559999-60560018 Msa1299410:intron 30.0%
ACCAACAATGAATAAACCTT+TGG - chr8_3:60560166-60560185 Msa1299410:intron 30.0%
ACCAAAGGTTTATTCATTGT+TGG + chr8_3:60560170-60560189 None:intergenic 30.0%
ATCCAAATTGTCAATTGTTG+AGG - chr8_3:60560214-60560233 Msa1299410:intron 30.0%
TTGAAGATATTAGTTCAGCA+AGG - chr8_3:60560258-60560277 Msa1299410:intron 30.0%
!! AGTTTTGTAAAGATGTAAGG+AGG + chr8_3:60560410-60560429 None:intergenic 30.0%
ATCAAGTTATGGATTTCAAG+AGG - chr8_3:60560469-60560488 Msa1299410:five_prime_UTR 30.0%
ATTTCATTTCATACCCGAAA+TGG - chr8_3:60560677-60560696 Msa1299410:five_prime_UTR 30.0%
TTTCATTTCATACCCGAAAT+GGG - chr8_3:60560678-60560697 Msa1299410:five_prime_UTR 30.0%
AAAGAGAATCAAACAAGAGA+TGG + chr8_3:60558502-60558521 None:intergenic 30.0%
AATACAAAGTTTCAAAGGGA+GGG + chr8_3:60558531-60558550 None:intergenic 30.0%
GACTCAATACAAAGTTTCAA+AGG + chr8_3:60558536-60558555 None:intergenic 30.0%
! TAAAGATCTAAGACTTATGG+CGG + chr8_3:60558660-60558679 None:intergenic 30.0%
! ATATATATATATATGGCGGG+TGG - chr8_3:60558777-60558796 Msa1299410:CDS 30.0%
!! TATATATATATATGGCGGGT+GGG - chr8_3:60558778-60558797 Msa1299410:CDS 30.0%
GATAACTAACCAAAGAAAGA+AGG + chr8_3:60558933-60558952 None:intergenic 30.0%
! AGTTTTTGATATCTCTGCAA+CGG + chr8_3:60559169-60559188 None:intergenic 30.0%
TTGAATAGGTTCAAGATCTA+TGG - chr8_3:60559300-60559319 Msa1299410:intron 30.0%
TGTGGTTCACATAAAACTAT+TGG - chr8_3:60559999-60560018 Msa1299410:intron 30.0%
ACCAACAATGAATAAACCTT+TGG - chr8_3:60560166-60560185 Msa1299410:intron 30.0%
ACCAAAGGTTTATTCATTGT+TGG + chr8_3:60560170-60560189 None:intergenic 30.0%
ATCCAAATTGTCAATTGTTG+AGG - chr8_3:60560214-60560233 Msa1299410:intron 30.0%
TTGAAGATATTAGTTCAGCA+AGG - chr8_3:60560258-60560277 Msa1299410:intron 30.0%
!! AGTTTTGTAAAGATGTAAGG+AGG + chr8_3:60560410-60560429 None:intergenic 30.0%
ATCAAGTTATGGATTTCAAG+AGG - chr8_3:60560469-60560488 Msa1299410:five_prime_UTR 30.0%
ATTTCATTTCATACCCGAAA+TGG - chr8_3:60560677-60560696 Msa1299410:five_prime_UTR 30.0%
TTTCATTTCATACCCGAAAT+GGG - chr8_3:60560678-60560697 Msa1299410:five_prime_UTR 30.0%
! TGAGAAAAATGGACTCTGTT+GGG + chr8_3:60558401-60558420 None:intergenic 35.0%
! ATGAGAAAAATGGACTCTGT+TGG + chr8_3:60558402-60558421 None:intergenic 35.0%
ATACAAAGTTTCAAAGGGAG+GGG + chr8_3:60558530-60558549 None:intergenic 35.0%
CAATACAAAGTTTCAAAGGG+AGG + chr8_3:60558532-60558551 None:intergenic 35.0%
! TCTTGTTGCCTTCTTTTGAT+CGG - chr8_3:60558559-60558578 Msa1299410:three_prime_UTR 35.0%
! CTTCTTTTGATCGGAGTAAT+GGG - chr8_3:60558568-60558587 Msa1299410:three_prime_UTR 35.0%
GATGATGATTTCAGTGATGT+GGG + chr8_3:60558626-60558645 None:intergenic 35.0%
! TGATGATGATTTCAGTGATG+TGG + chr8_3:60558627-60558646 None:intergenic 35.0%
TATATAGCTACAAGCTAGCT+AGG + chr8_3:60558694-60558713 None:intergenic 35.0%
GAAAGGAAAAGAGAATCAAG+AGG + chr8_3:60558903-60558922 None:intergenic 35.0%
AGAAAGAAGGAGAAGAAGAA+AGG + chr8_3:60558920-60558939 None:intergenic 35.0%
TCTTCTTCTCCTTCTTTCTT+TGG - chr8_3:60558921-60558940 Msa1299410:CDS 35.0%
GGATTTGATCTTGACGAAAA+CGG - chr8_3:60559376-60559395 Msa1299410:intron 35.0%
TTCATCAATCCGAGAAGAAA+CGG - chr8_3:60559422-60559441 Msa1299410:intron 35.0%
!! TCTTGAGAAAAGCTTTGAAG+AGG - chr8_3:60559471-60559490 Msa1299410:intron 35.0%
ATAATCCTTCTCAAGCTGTT+TGG + chr8_3:60559602-60559621 None:intergenic 35.0%
ACCTTCTCAAAGAGAAAGAT+AGG - chr8_3:60559668-60559687 Msa1299410:CDS 35.0%
! ACCTATCTTTCTCTTTGAGA+AGG + chr8_3:60559672-60559691 None:intergenic 35.0%
GAAAGATAGGTTACAATCTG+AGG - chr8_3:60559681-60559700 Msa1299410:CDS 35.0%
! TTGCAAGTACCTTTTCAGTT+AGG + chr8_3:60560085-60560104 None:intergenic 35.0%
CAAGAGGGAAAATTCAAACA+AGG - chr8_3:60560113-60560132 Msa1299410:intron 35.0%
ACAAGGTGAAAGTGAAACAA+AGG - chr8_3:60560130-60560149 Msa1299410:intron 35.0%
TGAAACAAAGGAATTCTTGC+AGG - chr8_3:60560142-60560161 Msa1299410:intron 35.0%
TCAGAAACTGAATCAACCAA+AGG + chr8_3:60560185-60560204 None:intergenic 35.0%
! TTTGGTTGATTCAGTTTCTG+AGG - chr8_3:60560184-60560203 Msa1299410:intron 35.0%
! TTGGTTGATTCAGTTTCTGA+GGG - chr8_3:60560185-60560204 Msa1299410:intron 35.0%
AGCCTCAACAATTGACAATT+TGG + chr8_3:60560219-60560238 None:intergenic 35.0%
TGTCTTCTTCATCTTGTGAT+AGG + chr8_3:60560379-60560398 None:intergenic 35.0%
TTGATGAATTATCATGTGGC+GGG + chr8_3:60560454-60560473 None:intergenic 35.0%
CTTGATGAATTATCATGTGG+CGG + chr8_3:60560455-60560474 None:intergenic 35.0%
AAGATCATCATCAAGCTCTT+TGG - chr8_3:60560492-60560511 Msa1299410:five_prime_UTR 35.0%
TCACTCACTTTGCACAAAAA+GGG + chr8_3:60560604-60560623 None:intergenic 35.0%
TGCGTAATAAAGTCAGAGAA+TGG - chr8_3:60560642-60560661 Msa1299410:five_prime_UTR 35.0%
! TGAGAAAAATGGACTCTGTT+GGG + chr8_3:60558401-60558420 None:intergenic 35.0%
! ATGAGAAAAATGGACTCTGT+TGG + chr8_3:60558402-60558421 None:intergenic 35.0%
ATACAAAGTTTCAAAGGGAG+GGG + chr8_3:60558530-60558549 None:intergenic 35.0%
CAATACAAAGTTTCAAAGGG+AGG + chr8_3:60558532-60558551 None:intergenic 35.0%
! TCTTGTTGCCTTCTTTTGAT+CGG - chr8_3:60558559-60558578 Msa1299410:three_prime_UTR 35.0%
! CTTCTTTTGATCGGAGTAAT+GGG - chr8_3:60558568-60558587 Msa1299410:three_prime_UTR 35.0%
GATGATGATTTCAGTGATGT+GGG + chr8_3:60558626-60558645 None:intergenic 35.0%
! TGATGATGATTTCAGTGATG+TGG + chr8_3:60558627-60558646 None:intergenic 35.0%
TATATAGCTACAAGCTAGCT+AGG + chr8_3:60558694-60558713 None:intergenic 35.0%
GAAAGGAAAAGAGAATCAAG+AGG + chr8_3:60558903-60558922 None:intergenic 35.0%
AGAAAGAAGGAGAAGAAGAA+AGG + chr8_3:60558920-60558939 None:intergenic 35.0%
TCTTCTTCTCCTTCTTTCTT+TGG - chr8_3:60558921-60558940 Msa1299410:CDS 35.0%
GGATTTGATCTTGACGAAAA+CGG - chr8_3:60559376-60559395 Msa1299410:intron 35.0%
TTCATCAATCCGAGAAGAAA+CGG - chr8_3:60559422-60559441 Msa1299410:intron 35.0%
!! TCTTGAGAAAAGCTTTGAAG+AGG - chr8_3:60559471-60559490 Msa1299410:intron 35.0%
ATAATCCTTCTCAAGCTGTT+TGG + chr8_3:60559602-60559621 None:intergenic 35.0%
ACCTTCTCAAAGAGAAAGAT+AGG - chr8_3:60559668-60559687 Msa1299410:CDS 35.0%
! ACCTATCTTTCTCTTTGAGA+AGG + chr8_3:60559672-60559691 None:intergenic 35.0%
GAAAGATAGGTTACAATCTG+AGG - chr8_3:60559681-60559700 Msa1299410:CDS 35.0%
! TTGCAAGTACCTTTTCAGTT+AGG + chr8_3:60560085-60560104 None:intergenic 35.0%
CAAGAGGGAAAATTCAAACA+AGG - chr8_3:60560113-60560132 Msa1299410:intron 35.0%
ACAAGGTGAAAGTGAAACAA+AGG - chr8_3:60560130-60560149 Msa1299410:intron 35.0%
TGAAACAAAGGAATTCTTGC+AGG - chr8_3:60560142-60560161 Msa1299410:intron 35.0%
TCAGAAACTGAATCAACCAA+AGG + chr8_3:60560185-60560204 None:intergenic 35.0%
! TTTGGTTGATTCAGTTTCTG+AGG - chr8_3:60560184-60560203 Msa1299410:intron 35.0%
! TTGGTTGATTCAGTTTCTGA+GGG - chr8_3:60560185-60560204 Msa1299410:intron 35.0%
AGCCTCAACAATTGACAATT+TGG + chr8_3:60560219-60560238 None:intergenic 35.0%
TGTCTTCTTCATCTTGTGAT+AGG + chr8_3:60560379-60560398 None:intergenic 35.0%
TTGATGAATTATCATGTGGC+GGG + chr8_3:60560454-60560473 None:intergenic 35.0%
CTTGATGAATTATCATGTGG+CGG + chr8_3:60560455-60560474 None:intergenic 35.0%
AAGATCATCATCAAGCTCTT+TGG - chr8_3:60560492-60560511 Msa1299410:five_prime_UTR 35.0%
TCACTCACTTTGCACAAAAA+GGG + chr8_3:60560604-60560623 None:intergenic 35.0%
TGCGTAATAAAGTCAGAGAA+TGG - chr8_3:60560642-60560661 Msa1299410:five_prime_UTR 35.0%
AGATACAGAGACAGAACTAG+TGG + chr8_3:60558461-60558480 None:intergenic 40.0%
CCATTACTCCGATCAAAAGA+AGG + chr8_3:60558570-60558589 None:intergenic 40.0%
! CCTTCTTTTGATCGGAGTAA+TGG - chr8_3:60558567-60558586 Msa1299410:three_prime_UTR 40.0%
GATTTCAGTGATGTGGGATT+GGG + chr8_3:60558620-60558639 None:intergenic 40.0%
TGATTTCAGTGATGTGGGAT+TGG + chr8_3:60558621-60558640 None:intergenic 40.0%
!!! GGTGGGAGAGTTTTTTCAAA+TGG - chr8_3:60558795-60558814 Msa1299410:CDS 40.0%
AATCAACAACAAACTCCTCG+TGG - chr8_3:60558861-60558880 Msa1299410:CDS 40.0%
TGAGATTCAGATTGCAATCG+TGG - chr8_3:60559060-60559079 Msa1299410:CDS 40.0%
!!! GTGAGTTTTGAAGATGCTCA+AGG - chr8_3:60559322-60559341 Msa1299410:intron 40.0%
!!! GTTTTGAAGATGCTCAAGGA+AGG - chr8_3:60559326-60559345 Msa1299410:intron 40.0%
AAGATGCTCAAGGAAGGAAA+AGG - chr8_3:60559332-60559351 Msa1299410:intron 40.0%
ACTTGCAAGAGAGAAACAAG+AGG - chr8_3:60560097-60560116 Msa1299410:intron 40.0%
CTTGCAAGAGAGAAACAAGA+GGG - chr8_3:60560098-60560117 Msa1299410:intron 40.0%
TTCAGCAAGGAGTGACATAT+TGG - chr8_3:60560271-60560290 Msa1299410:CDS 40.0%
CTCACTCACTTTGCACAAAA+AGG + chr8_3:60560605-60560624 None:intergenic 40.0%
AAAGTCAGAGAATGGCAAGT+TGG - chr8_3:60560650-60560669 Msa1299410:five_prime_UTR 40.0%
TGGCTCTTGTAGGATAGAAA+TGG - chr8_3:60560703-60560722 Msa1299410:five_prime_UTR 40.0%
CTCTTGTAGGATAGAAATGG+CGG - chr8_3:60560706-60560725 Msa1299410:five_prime_UTR 40.0%
AGATACAGAGACAGAACTAG+TGG + chr8_3:60558461-60558480 None:intergenic 40.0%
CCATTACTCCGATCAAAAGA+AGG + chr8_3:60558570-60558589 None:intergenic 40.0%
! CCTTCTTTTGATCGGAGTAA+TGG - chr8_3:60558567-60558586 Msa1299410:three_prime_UTR 40.0%
GATTTCAGTGATGTGGGATT+GGG + chr8_3:60558620-60558639 None:intergenic 40.0%
TGATTTCAGTGATGTGGGAT+TGG + chr8_3:60558621-60558640 None:intergenic 40.0%
!!! GGTGGGAGAGTTTTTTCAAA+TGG - chr8_3:60558795-60558814 Msa1299410:CDS 40.0%
AATCAACAACAAACTCCTCG+TGG - chr8_3:60558861-60558880 Msa1299410:CDS 40.0%
TGAGATTCAGATTGCAATCG+TGG - chr8_3:60559060-60559079 Msa1299410:CDS 40.0%
!!! GTGAGTTTTGAAGATGCTCA+AGG - chr8_3:60559322-60559341 Msa1299410:intron 40.0%
!!! GTTTTGAAGATGCTCAAGGA+AGG - chr8_3:60559326-60559345 Msa1299410:intron 40.0%
AAGATGCTCAAGGAAGGAAA+AGG - chr8_3:60559332-60559351 Msa1299410:intron 40.0%
ACTTGCAAGAGAGAAACAAG+AGG - chr8_3:60560097-60560116 Msa1299410:intron 40.0%
CTTGCAAGAGAGAAACAAGA+GGG - chr8_3:60560098-60560117 Msa1299410:intron 40.0%
TTCAGCAAGGAGTGACATAT+TGG - chr8_3:60560271-60560290 Msa1299410:CDS 40.0%
CTCACTCACTTTGCACAAAA+AGG + chr8_3:60560605-60560624 None:intergenic 40.0%
AAAGTCAGAGAATGGCAAGT+TGG - chr8_3:60560650-60560669 Msa1299410:five_prime_UTR 40.0%
TGGCTCTTGTAGGATAGAAA+TGG - chr8_3:60560703-60560722 Msa1299410:five_prime_UTR 40.0%
CTCTTGTAGGATAGAAATGG+CGG - chr8_3:60560706-60560725 Msa1299410:five_prime_UTR 40.0%
TGTTGAGAAGAGTTTCCACG+AGG + chr8_3:60558879-60558898 None:intergenic 45.0%
! AAGGAAGGAAAAGGTGCAAC+AGG - chr8_3:60559341-60559360 Msa1299410:intron 45.0%
AGGTGCAACAGGTCTTTCTT+CGG - chr8_3:60559352-60559371 Msa1299410:intron 45.0%
CGAAAACGGAGATGATGAGA+TGG - chr8_3:60559390-60559409 Msa1299410:intron 45.0%
ACAACAAGCTTGAACCAGAG+AGG - chr8_3:60559494-60559513 Msa1299410:intron 45.0%
ACCAAGCTAGCTAAAGACCT+TGG - chr8_3:60559520-60559539 Msa1299410:CDS 45.0%
ACCAAGGTCTTTAGCTAGCT+TGG + chr8_3:60559524-60559543 None:intergenic 45.0%
AACCAAATAGCAACTTGCCG+TGG + chr8_3:60559553-60559572 None:intergenic 45.0%
TTCAAAACCGTCGTGCAAGA+TGG - chr8_3:60559572-60559591 Msa1299410:CDS 45.0%
GAAGACCAAACAGCTTGAGA+AGG - chr8_3:60559594-60559613 Msa1299410:CDS 45.0%
GGTAGCAAGCCTAACTGAAA+AGG - chr8_3:60560073-60560092 Msa1299410:intron 45.0%
! GATTCAGTTTCTGAGGGTGA+AGG - chr8_3:60560191-60560210 Msa1299410:intron 45.0%
ACACTCCATCAGTGTAACGT+GGG + chr8_3:60560307-60560326 None:intergenic 45.0%
AACACTCCATCAGTGTAACG+TGG + chr8_3:60560308-60560327 None:intergenic 45.0%
! ACTGATGGAGTGTTAGAGAC+AGG - chr8_3:60560314-60560333 Msa1299410:CDS 45.0%
!! TGAATTATCATGTGGCGGGT+CGG + chr8_3:60560450-60560469 None:intergenic 45.0%
ATCATCAAGCTCTTTGGCCT+TGG - chr8_3:60560498-60560517 Msa1299410:five_prime_UTR 45.0%
TTTCATACCCGAAATGGGTG+TGG - chr8_3:60560683-60560702 Msa1299410:five_prime_UTR 45.0%
TACAAGAGCCACACCCATTT+CGG + chr8_3:60560694-60560713 None:intergenic 45.0%
TGTTGAGAAGAGTTTCCACG+AGG + chr8_3:60558879-60558898 None:intergenic 45.0%
! AAGGAAGGAAAAGGTGCAAC+AGG - chr8_3:60559341-60559360 Msa1299410:intron 45.0%
AGGTGCAACAGGTCTTTCTT+CGG - chr8_3:60559352-60559371 Msa1299410:intron 45.0%
CGAAAACGGAGATGATGAGA+TGG - chr8_3:60559390-60559409 Msa1299410:intron 45.0%
ACAACAAGCTTGAACCAGAG+AGG - chr8_3:60559494-60559513 Msa1299410:intron 45.0%
ACCAAGCTAGCTAAAGACCT+TGG - chr8_3:60559520-60559539 Msa1299410:CDS 45.0%
ACCAAGGTCTTTAGCTAGCT+TGG + chr8_3:60559524-60559543 None:intergenic 45.0%
AACCAAATAGCAACTTGCCG+TGG + chr8_3:60559553-60559572 None:intergenic 45.0%
TTCAAAACCGTCGTGCAAGA+TGG - chr8_3:60559572-60559591 Msa1299410:CDS 45.0%
GAAGACCAAACAGCTTGAGA+AGG - chr8_3:60559594-60559613 Msa1299410:CDS 45.0%
GGTAGCAAGCCTAACTGAAA+AGG - chr8_3:60560073-60560092 Msa1299410:intron 45.0%
! GATTCAGTTTCTGAGGGTGA+AGG - chr8_3:60560191-60560210 Msa1299410:intron 45.0%
ACACTCCATCAGTGTAACGT+GGG + chr8_3:60560307-60560326 None:intergenic 45.0%
AACACTCCATCAGTGTAACG+TGG + chr8_3:60560308-60560327 None:intergenic 45.0%
! ACTGATGGAGTGTTAGAGAC+AGG - chr8_3:60560314-60560333 Msa1299410:CDS 45.0%
!! TGAATTATCATGTGGCGGGT+CGG + chr8_3:60560450-60560469 None:intergenic 45.0%
ATCATCAAGCTCTTTGGCCT+TGG - chr8_3:60560498-60560517 Msa1299410:five_prime_UTR 45.0%
TTTCATACCCGAAATGGGTG+TGG - chr8_3:60560683-60560702 Msa1299410:five_prime_UTR 45.0%
TACAAGAGCCACACCCATTT+CGG + chr8_3:60560694-60560713 None:intergenic 45.0%
! ATTGGGAGGTGTGGGAACAA+CGG + chr8_3:60558603-60558622 None:intergenic 50.0%
TTCAGTGATGTGGGATTGGG+AGG + chr8_3:60558617-60558636 None:intergenic 50.0%
! AGACTTATGGCGGAAGAAGC+TGG + chr8_3:60558650-60558669 None:intergenic 50.0%
TGCAACAGGTCTTTCTTCGG+AGG - chr8_3:60559355-60559374 Msa1299410:intron 50.0%
TGAGAGACGCCGTTTCTTCT+CGG + chr8_3:60559434-60559453 None:intergenic 50.0%
!! GCTAGCTTGGTTTTCCTCTC+TGG + chr8_3:60559511-60559530 None:intergenic 50.0%
!! AAGACCTTGGTTTGCAGCCA+CGG - chr8_3:60559533-60559552 Msa1299410:CDS 50.0%
! AGCCACGGCAAGTTGCTATT+TGG - chr8_3:60559548-60559567 Msa1299410:CDS 50.0%
TGGTCTTCCATCTTGCACGA+CGG + chr8_3:60559582-60559601 None:intergenic 50.0%
ACAAGAGCCACACCCATTTC+GGG + chr8_3:60560693-60560712 None:intergenic 50.0%
GAAATGGGTGTGGCTCTTGT+AGG - chr8_3:60560693-60560712 Msa1299410:five_prime_UTR 50.0%
! ATTGGGAGGTGTGGGAACAA+CGG + chr8_3:60558603-60558622 None:intergenic 50.0%
TTCAGTGATGTGGGATTGGG+AGG + chr8_3:60558617-60558636 None:intergenic 50.0%
! AGACTTATGGCGGAAGAAGC+TGG + chr8_3:60558650-60558669 None:intergenic 50.0%
TGCAACAGGTCTTTCTTCGG+AGG - chr8_3:60559355-60559374 Msa1299410:intron 50.0%
TGAGAGACGCCGTTTCTTCT+CGG + chr8_3:60559434-60559453 None:intergenic 50.0%
!! GCTAGCTTGGTTTTCCTCTC+TGG + chr8_3:60559511-60559530 None:intergenic 50.0%
!! AAGACCTTGGTTTGCAGCCA+CGG - chr8_3:60559533-60559552 Msa1299410:CDS 50.0%
! AGCCACGGCAAGTTGCTATT+TGG - chr8_3:60559548-60559567 Msa1299410:CDS 50.0%
TGGTCTTCCATCTTGCACGA+CGG + chr8_3:60559582-60559601 None:intergenic 50.0%
ACAAGAGCCACACCCATTTC+GGG + chr8_3:60560693-60560712 None:intergenic 50.0%
GAAATGGGTGTGGCTCTTGT+AGG - chr8_3:60560693-60560712 Msa1299410:five_prime_UTR 50.0%
! GATGTGGGATTGGGAGGTGT+GGG + chr8_3:60558611-60558630 None:intergenic 55.0%
TGATGTGGGATTGGGAGGTG+TGG + chr8_3:60558612-60558631 None:intergenic 55.0%
GAAGAAACGGCGTCTCTCAG+TGG - chr8_3:60559435-60559454 Msa1299410:intron 55.0%
GACAGCCCACGTTACACTGA+TGG - chr8_3:60560299-60560318 Msa1299410:CDS 55.0%
! GATGTGGGATTGGGAGGTGT+GGG + chr8_3:60558611-60558630 None:intergenic 55.0%
TGATGTGGGATTGGGAGGTG+TGG + chr8_3:60558612-60558631 None:intergenic 55.0%
GAAGAAACGGCGTCTCTCAG+TGG - chr8_3:60559435-60559454 Msa1299410:intron 55.0%
GACAGCCCACGTTACACTGA+TGG - chr8_3:60560299-60560318 Msa1299410:CDS 55.0%
GAGGTGTGGGAACAACGGCA+GGG + chr8_3:60558598-60558617 None:intergenic 60.0%
CTTGCCGTGGCTGCAAACCA+AGG + chr8_3:60559540-60559559 None:intergenic 60.0%
GAGGTGTGGGAACAACGGCA+GGG + chr8_3:60558598-60558617 None:intergenic 60.0%
CTTGCCGTGGCTGCAAACCA+AGG + chr8_3:60559540-60559559 None:intergenic 60.0%
! GGAGGTGTGGGAACAACGGC+AGG + chr8_3:60558599-60558618 None:intergenic 65.0%
! GGAGGTGTGGGAACAACGGC+AGG + chr8_3:60558599-60558618 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 60558392 60560814 60558392 ID=Msa1299410;Name=Msa1299410
chr8_3 mRNA 60558392 60560814 60558392 ID=Msa1299410-mRNA-1;Parent=Msa1299410;Name=Msa1299410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=397|1|1|1|1|1|3|285|334
chr8_3 exon 60558392 60559132 60558392 ID=Msa1299410-mRNA-1:exon:17702;Parent=Msa1299410-mRNA-1
chr8_3 exon 60559504 60559898 60559504 ID=Msa1299410-mRNA-1:exon:17701;Parent=Msa1299410-mRNA-1
chr8_3 exon 60560264 60560814 60560264 ID=Msa1299410-mRNA-1:exon:17700;Parent=Msa1299410-mRNA-1
chr8_3 five_prime_UTR 60560418 60560814 60560418 ID=Msa1299410-mRNA-1:five_prime_utr;Parent=Msa1299410-mRNA-1
chr8_3 CDS 60560264 60560417 60560264 ID=Msa1299410-mRNA-1:cds;Parent=Msa1299410-mRNA-1
chr8_3 CDS 60559504 60559898 60559504 ID=Msa1299410-mRNA-1:cds;Parent=Msa1299410-mRNA-1
chr8_3 CDS 60558677 60559132 60558677 ID=Msa1299410-mRNA-1:cds;Parent=Msa1299410-mRNA-1
chr8_3 three_prime_UTR 60558392 60558676 60558392 ID=Msa1299410-mRNA-1:three_prime_utr;Parent=Msa1299410-mRNA-1
Gene Sequence

>Msa1299410

ATGGCGGGTGGGAGAGTTTTTTCAAATGGTCCTGCAAATATTTCAAATATGAATATGAATATTTTGCTTCAGAATCAACAACAAACTCCTCGTGGAAACTCTTCTCAACAACCTCTTGATTCTCTTTTCCTTTCTTCTTCTCCTTCTTTCTTTGGTTCAAGATCTATGGTGAGTTTTGAAGATGCTCAAGGAAGGAAAAGGTGCAACAGGTCTTTCTTCGGAGGATTTGATCTTGACGAAAACGGAGATGATGAGATGGATGAGTACTTTCATCAATCCGAGAAGAAACGGCGTCTCTCAGTGGATCAAGTTCAGTTTCTTGAGAAAAGCTTTGAAGAGGACAACAAGCTTGAACCAGAGAGGAAAACCAAGCTAGCTAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAAAACCGTCGTGCAAGATGGAAGACCAAACAGCTTGAGAAGGATTATGATTCTCTTAATGATAGTTATGAGTCTCTTAAGACAGATTATGACAACCTTCTCAAAGAGAAAGATAGGTTACAATCTGAGGTAGCAAGCCTAACTGAAAAGGTACTTGCAAGAGAGAAACAAGAGGGAAAATTCAAACAAGGTGAAAGTGAAACAAAGGAATTCTTGCAGGAACCAACAATGAATAAACCTTTGGTTGATTCAGTTTCTGAGGGTGAAGGATCCAAATTGTCAATTGTTGAGGCTTCTAATAACAATAACAAACTTGAAGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACACTGATGGAGTGTTAGAGACAGGTGATTCTTCCTATGTATTTGAACATGAATATCAATCGGACCTATCACAAGATGAAGAAGACAATTTATTGCCTCCTTACATCTTTACAAAACTTGAAGATGTGAATTACTCCGACCCGCCACATGATAATTCATCAAGTTATGGATTTCAAGAGGAAGATCATCATCAAGCTCTTTGGCCTTGGTCTTATTAA
Protein sequence

>Msa1299410

MAGGRVFSNGPANISNMNMNILLQNQQQTPRGNSSQQPLDSLFLSSSPSFFGSRSMVSFEDAQGRKRCNRSFFGGFDLDENGDDEMDEYFHQSEKKRRLSVDQVQFLEKSFEEDNKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLNDSYESLKTDYDNLLKEKDRLQSEVASLTEKVLAREKQEGKFKQGESETKEFLQEPTMNKPLVDSVSEGEGSKLSIVEASNNNNKLEDISSARSDILDCDSPRYTDGVLETGDSSYVFEHEYQSDLSQDEEDNLLPPYIFTKLEDVNYSDPPHDNSSSYGFQEEDHHQALWPWSY*