Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300190 | G7JQ00 | 69.333 | 225 | 69 | 0 | 1 | 225 | 1 | 225 | 7.04e-120 | 349 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1300190 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1300190 | MtrunA17_Chr5g0393501 | 34.361 | 227 | 141 | 4 | 3 | 224 | 18 | 241 | 3.35e-42 | 143 |
| Msa1300190 | MtrunA17_Chr4g0044671 | 28.125 | 192 | 138 | 0 | 19 | 210 | 16 | 207 | 1.29e-23 | 94.4 |
| Msa1300190 | MtrunA17_Chr4g0034781 | 27.604 | 192 | 139 | 0 | 19 | 210 | 10 | 201 | 1.05e-22 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTGTACTTCAGTCTAAC+AGG | 0.358455 | 8_3:-61636162 | None:intergenic |
| ATCGGAGCAATGGCTCTTGC+TGG | 0.379457 | 8_3:+61635649 | Msa1300190:CDS |
| TTCTGTGCATGTACATGCTA+AGG | 0.401821 | 8_3:+61635389 | Msa1300190:CDS |
| TCCAACCATCGGTCAACAAC+GGG | 0.435673 | 8_3:-61635721 | None:intergenic |
| TGTTCTGCCAATAGTGTTGA+GGG | 0.439102 | 8_3:+61636231 | Msa1300190:CDS |
| TAGGAAATACCTGCTGCCTT+TGG | 0.440301 | 8_3:+61636075 | Msa1300190:intron |
| GTCACCGCCCTCAACACTAT+TGG | 0.443702 | 8_3:-61636238 | None:intergenic |
| TTAATATCAGTGGTAAAGTT+CGG | 0.457382 | 8_3:-61635354 | None:intergenic |
| CCGAAGTTGTTGTTCGGAAG+AGG | 0.460466 | 8_3:+61636195 | Msa1300190:CDS |
| GTCGATTCATATCTAACAAT+AGG | 0.461819 | 8_3:-61635914 | None:intergenic |
| ATGCACTTCTACCAAGGTAC+TGG | 0.480218 | 8_3:-61635793 | None:intergenic |
| CACAATTATATCGTGTTATG+TGG | 0.480376 | 8_3:+61636120 | Msa1300190:CDS |
| AGGAATTTGCCAAAGGCAGC+AGG | 0.481038 | 8_3:-61636084 | None:intergenic |
| GCCCGTTGTTGACCGATGGT+TGG | 0.487962 | 8_3:+61635720 | Msa1300190:CDS |
| CTGTTCTGCCAATAGTGTTG+AGG | 0.490646 | 8_3:+61636230 | Msa1300190:CDS |
| GCCTTACTCATAGTATGGTA+CGG | 0.492286 | 8_3:-61635863 | None:intergenic |
| TAATCCTACGTGCAAACAAA+AGG | 0.493313 | 8_3:-61635823 | None:intergenic |
| CCGAACAACAACTTCGGTAC+AGG | 0.494895 | 8_3:-61636189 | None:intergenic |
| TATGATAAGTTATCAACGCT+TGG | 0.500685 | 8_3:-61636313 | None:intergenic |
| TGGTACGGTGGAAAATCAAC+GGG | 0.501359 | 8_3:-61635848 | None:intergenic |
| ACCGTACCATACTATGAGTA+AGG | 0.504499 | 8_3:+61635862 | Msa1300190:CDS |
| CTTATTGCTTTCCAGTACCT+TGG | 0.510717 | 8_3:+61635782 | Msa1300190:CDS |
| TCAGTATTTCTACGAGCTAT+CGG | 0.520948 | 8_3:+61635631 | Msa1300190:CDS |
| TGGCTCTTGCTGGATGGTGA+TGG | 0.523180 | 8_3:+61635659 | Msa1300190:CDS |
| CCTGTACCGAAGTTGTTGTT+CGG | 0.539367 | 8_3:+61636189 | Msa1300190:CDS |
| TCTTATTTCACTCCAACCAT+CGG | 0.555842 | 8_3:-61635732 | None:intergenic |
| AGTTGTTGTTCGGAAGAGGT+TGG | 0.556733 | 8_3:+61636199 | Msa1300190:CDS |
| GTGTGAAGAGATGCGTCTAA+AGG | 0.561956 | 8_3:+61635320 | None:intergenic |
| TTTGAAATGCACTTCTACCA+AGG | 0.570161 | 8_3:-61635799 | None:intergenic |
| TCTAACAATAGGAACTTCAA+AGG | 0.573585 | 8_3:-61635903 | None:intergenic |
| GATCGCCCGTTGTTGACCGA+TGG | 0.581251 | 8_3:+61635716 | Msa1300190:CDS |
| TGTTGAGGGCGGTGACGTGT+TGG | 0.582365 | 8_3:+61636245 | Msa1300190:CDS |
| GAGCAATGGCTCTTGCTGGA+TGG | 0.585275 | 8_3:+61635653 | Msa1300190:CDS |
| CCAAATAACGAGTAGGATGT+CGG | 0.586900 | 8_3:+61635584 | Msa1300190:intron |
| ATGGTACGGTGGAAAATCAA+CGG | 0.608452 | 8_3:-61635849 | None:intergenic |
| TCTACGAGCTATCGGAGCAA+TGG | 0.609982 | 8_3:+61635639 | Msa1300190:CDS |
| CTCCAACCATCGGTCAACAA+CGG | 0.610742 | 8_3:-61635722 | None:intergenic |
| TATTGTTAGATATGAATCGA+CGG | 0.622625 | 8_3:+61635916 | Msa1300190:CDS |
| ATATCAGTGGTAAAGTTCGG+TGG | 0.626072 | 8_3:-61635351 | None:intergenic |
| TGAATCGACGGAATCACCAA+AGG | 0.650707 | 8_3:+61635928 | Msa1300190:CDS |
| CCTCTTCCGAACAACAACTT+CGG | 0.653177 | 8_3:-61636195 | None:intergenic |
| ACAGGAACGATATTATCAGA+AGG | 0.658608 | 8_3:-61636144 | None:intergenic |
| TTACTCATAGTATGGTACGG+TGG | 0.732335 | 8_3:-61635860 | None:intergenic |
| TCTGCCAATAGTGTTGAGGG+CGG | 0.775050 | 8_3:+61636234 | Msa1300190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTCTTTTTTGATTTTGTT+TGG | + | chr8_3:61635547-61635566 | Msa1300190:intron | 15.0% |
| !!! | TGATTGGATTTTTTTTTTTT+AGG | + | chr8_3:61635977-61635996 | Msa1300190:intron | 15.0% |
| !!! | GATTGGATTTTTTTTTTTTA+GGG | + | chr8_3:61635978-61635997 | Msa1300190:intron | 15.0% |
| !!! | TTTTTTTTTTTTAGGGAAAT+TGG | + | chr8_3:61635985-61636004 | Msa1300190:intron | 15.0% |
| !!! | TATTCTTTTTTGATTTTGTT+TGG | + | chr8_3:61635547-61635566 | Msa1300190:intron | 15.0% |
| !!! | TGATTGGATTTTTTTTTTTT+AGG | + | chr8_3:61635977-61635996 | Msa1300190:intron | 15.0% |
| !!! | GATTGGATTTTTTTTTTTTA+GGG | + | chr8_3:61635978-61635997 | Msa1300190:intron | 15.0% |
| !!! | TTTTTTTTTTTTAGGGAAAT+TGG | + | chr8_3:61635985-61636004 | Msa1300190:intron | 15.0% |
| !!! | AGAAAATTTTATCAATTTCG+TGG | + | chr8_3:61635752-61635771 | Msa1300190:CDS | 20.0% |
| !!! | TTTTATGTTTTTTTTTCCGT+AGG | + | chr8_3:61636056-61636075 | Msa1300190:intron | 20.0% |
| !!! | AGAAAATTTTATCAATTTCG+TGG | + | chr8_3:61635752-61635771 | Msa1300190:CDS | 20.0% |
| !!! | TTTTATGTTTTTTTTTCCGT+AGG | + | chr8_3:61636056-61636075 | Msa1300190:intron | 20.0% |
| ! | TTAATATCAGTGGTAAAGTT+CGG | - | chr8_3:61635357-61635376 | None:intergenic | 25.0% |
| !!! | AAAGGTACTTTTAATATCAG+TGG | - | chr8_3:61635367-61635386 | None:intergenic | 25.0% |
| ! | TCTATTTAGATCTAAAGAAC+TGG | + | chr8_3:61635438-61635457 | Msa1300190:intron | 25.0% |
| !!! | TGCGGTATTTGTTTTTTTTT+GGG | + | chr8_3:61635461-61635480 | Msa1300190:intron | 25.0% |
| ! | AAATACTGAGCAACAAAAAA+GGG | - | chr8_3:61635620-61635639 | None:intergenic | 25.0% |
| ! | TATTGTTAGATATGAATCGA+CGG | + | chr8_3:61635916-61635935 | Msa1300190:CDS | 25.0% |
| ! | AAGGAATAACAATTAACCTT+TGG | - | chr8_3:61635947-61635966 | None:intergenic | 25.0% |
| ! | TTAATATCAGTGGTAAAGTT+CGG | - | chr8_3:61635357-61635376 | None:intergenic | 25.0% |
| !!! | AAAGGTACTTTTAATATCAG+TGG | - | chr8_3:61635367-61635386 | None:intergenic | 25.0% |
| ! | TCTATTTAGATCTAAAGAAC+TGG | + | chr8_3:61635438-61635457 | Msa1300190:intron | 25.0% |
| !!! | TGCGGTATTTGTTTTTTTTT+GGG | + | chr8_3:61635461-61635480 | Msa1300190:intron | 25.0% |
| ! | AAATACTGAGCAACAAAAAA+GGG | - | chr8_3:61635620-61635639 | None:intergenic | 25.0% |
| ! | TATTGTTAGATATGAATCGA+CGG | + | chr8_3:61635916-61635935 | Msa1300190:CDS | 25.0% |
| ! | AAGGAATAACAATTAACCTT+TGG | - | chr8_3:61635947-61635966 | None:intergenic | 25.0% |
| ATGTACATGCACAGAAAAAA+AGG | - | chr8_3:61635385-61635404 | None:intergenic | 30.0% | |
| !!! | GTGCGGTATTTGTTTTTTTT+TGG | + | chr8_3:61635460-61635479 | Msa1300190:intron | 30.0% |
| !!! | GCGGTATTTGTTTTTTTTTG+GGG | + | chr8_3:61635462-61635481 | Msa1300190:intron | 30.0% |
| !!! | CGGTATTTGTTTTTTTTTGG+GGG | + | chr8_3:61635463-61635482 | Msa1300190:intron | 30.0% |
| !!! | TTTGTTTTTTTTTGGGGGTA+TGG | + | chr8_3:61635468-61635487 | Msa1300190:intron | 30.0% |
| GAAATACTGAGCAACAAAAA+AGG | - | chr8_3:61635621-61635640 | None:intergenic | 30.0% | |
| ! | ATTTTGCCTTACTCATAGTA+TGG | - | chr8_3:61635871-61635890 | None:intergenic | 30.0% |
| TCTAACAATAGGAACTTCAA+AGG | - | chr8_3:61635906-61635925 | None:intergenic | 30.0% | |
| ! | GTCGATTCATATCTAACAAT+AGG | - | chr8_3:61635917-61635936 | None:intergenic | 30.0% |
| TTCCTTTACTCATGTTTGAT+TGG | + | chr8_3:61635961-61635980 | Msa1300190:intron | 30.0% | |
| ATCCAATCAAACATGAGTAA+AGG | - | chr8_3:61635966-61635985 | None:intergenic | 30.0% | |
| !! | TTTTTGAAGGAATTTGCCAA+AGG | - | chr8_3:61636094-61636113 | None:intergenic | 30.0% |
| ! | AATTGTGATGCGATTTTTGA+AGG | - | chr8_3:61636107-61636126 | None:intergenic | 30.0% |
| CACAATTATATCGTGTTATG+TGG | + | chr8_3:61636120-61636139 | Msa1300190:CDS | 30.0% | |
| ATGTACATGCACAGAAAAAA+AGG | - | chr8_3:61635385-61635404 | None:intergenic | 30.0% | |
| !!! | GTGCGGTATTTGTTTTTTTT+TGG | + | chr8_3:61635460-61635479 | Msa1300190:intron | 30.0% |
| !!! | GCGGTATTTGTTTTTTTTTG+GGG | + | chr8_3:61635462-61635481 | Msa1300190:intron | 30.0% |
| !!! | CGGTATTTGTTTTTTTTTGG+GGG | + | chr8_3:61635463-61635482 | Msa1300190:intron | 30.0% |
| !!! | TTTGTTTTTTTTTGGGGGTA+TGG | + | chr8_3:61635468-61635487 | Msa1300190:intron | 30.0% |
| GAAATACTGAGCAACAAAAA+AGG | - | chr8_3:61635621-61635640 | None:intergenic | 30.0% | |
| ! | ATTTTGCCTTACTCATAGTA+TGG | - | chr8_3:61635871-61635890 | None:intergenic | 30.0% |
| TCTAACAATAGGAACTTCAA+AGG | - | chr8_3:61635906-61635925 | None:intergenic | 30.0% | |
| ! | GTCGATTCATATCTAACAAT+AGG | - | chr8_3:61635917-61635936 | None:intergenic | 30.0% |
| TTCCTTTACTCATGTTTGAT+TGG | + | chr8_3:61635961-61635980 | Msa1300190:intron | 30.0% | |
| ATCCAATCAAACATGAGTAA+AGG | - | chr8_3:61635966-61635985 | None:intergenic | 30.0% | |
| !! | TTTTTGAAGGAATTTGCCAA+AGG | - | chr8_3:61636094-61636113 | None:intergenic | 30.0% |
| ! | AATTGTGATGCGATTTTTGA+AGG | - | chr8_3:61636107-61636126 | None:intergenic | 30.0% |
| CACAATTATATCGTGTTATG+TGG | + | chr8_3:61636120-61636139 | Msa1300190:CDS | 30.0% | |
| TTAGATCTAAAGAACTGGTG+CGG | + | chr8_3:61635443-61635462 | Msa1300190:intron | 35.0% | |
| ! | CCTACTCGTTATTTGGAATA+TGG | - | chr8_3:61635580-61635599 | None:intergenic | 35.0% |
| CCATATTCCAAATAACGAGT+AGG | + | chr8_3:61635577-61635596 | Msa1300190:intron | 35.0% | |
| ! | TCAGTATTTCTACGAGCTAT+CGG | + | chr8_3:61635631-61635650 | Msa1300190:CDS | 35.0% |
| ! | TCTTATTTCACTCCAACCAT+CGG | - | chr8_3:61635735-61635754 | None:intergenic | 35.0% |
| ! | TTTGAAATGCACTTCTACCA+AGG | - | chr8_3:61635802-61635821 | None:intergenic | 35.0% |
| !! | AAATCCTTTTGTTTGCACGT+AGG | + | chr8_3:61635819-61635838 | Msa1300190:CDS | 35.0% |
| TAATCCTACGTGCAAACAAA+AGG | - | chr8_3:61635826-61635845 | None:intergenic | 35.0% | |
| ACAGGAACGATATTATCAGA+AGG | - | chr8_3:61636147-61636166 | None:intergenic | 35.0% | |
| TTAGATCTAAAGAACTGGTG+CGG | + | chr8_3:61635443-61635462 | Msa1300190:intron | 35.0% | |
| ! | CCTACTCGTTATTTGGAATA+TGG | - | chr8_3:61635580-61635599 | None:intergenic | 35.0% |
| CCATATTCCAAATAACGAGT+AGG | + | chr8_3:61635577-61635596 | Msa1300190:intron | 35.0% | |
| ! | TCAGTATTTCTACGAGCTAT+CGG | + | chr8_3:61635631-61635650 | Msa1300190:CDS | 35.0% |
| ! | TCTTATTTCACTCCAACCAT+CGG | - | chr8_3:61635735-61635754 | None:intergenic | 35.0% |
| ! | TTTGAAATGCACTTCTACCA+AGG | - | chr8_3:61635802-61635821 | None:intergenic | 35.0% |
| !! | AAATCCTTTTGTTTGCACGT+AGG | + | chr8_3:61635819-61635838 | Msa1300190:CDS | 35.0% |
| TAATCCTACGTGCAAACAAA+AGG | - | chr8_3:61635826-61635845 | None:intergenic | 35.0% | |
| ACAGGAACGATATTATCAGA+AGG | - | chr8_3:61636147-61636166 | None:intergenic | 35.0% | |
| ATATCAGTGGTAAAGTTCGG+TGG | - | chr8_3:61635354-61635373 | None:intergenic | 40.0% | |
| TTCTGTGCATGTACATGCTA+AGG | + | chr8_3:61635389-61635408 | Msa1300190:CDS | 40.0% | |
| CCAAATAACGAGTAGGATGT+CGG | + | chr8_3:61635584-61635603 | Msa1300190:intron | 40.0% | |
| CTTATTGCTTTCCAGTACCT+TGG | + | chr8_3:61635782-61635801 | Msa1300190:CDS | 40.0% | |
| ATGGTACGGTGGAAAATCAA+CGG | - | chr8_3:61635852-61635871 | None:intergenic | 40.0% | |
| TTACTCATAGTATGGTACGG+TGG | - | chr8_3:61635863-61635882 | None:intergenic | 40.0% | |
| ACCGTACCATACTATGAGTA+AGG | + | chr8_3:61635862-61635881 | Msa1300190:CDS | 40.0% | |
| GCCTTACTCATAGTATGGTA+CGG | - | chr8_3:61635866-61635885 | None:intergenic | 40.0% | |
| TGTGTGTACTTCAGTCTAAC+AGG | - | chr8_3:61636165-61636184 | None:intergenic | 40.0% | |
| ! | TGTTCTGCCAATAGTGTTGA+GGG | + | chr8_3:61636231-61636250 | Msa1300190:CDS | 40.0% |
| ATATCAGTGGTAAAGTTCGG+TGG | - | chr8_3:61635354-61635373 | None:intergenic | 40.0% | |
| TTCTGTGCATGTACATGCTA+AGG | + | chr8_3:61635389-61635408 | Msa1300190:CDS | 40.0% | |
| CCAAATAACGAGTAGGATGT+CGG | + | chr8_3:61635584-61635603 | Msa1300190:intron | 40.0% | |
| CTTATTGCTTTCCAGTACCT+TGG | + | chr8_3:61635782-61635801 | Msa1300190:CDS | 40.0% | |
| ATGGTACGGTGGAAAATCAA+CGG | - | chr8_3:61635852-61635871 | None:intergenic | 40.0% | |
| TTACTCATAGTATGGTACGG+TGG | - | chr8_3:61635863-61635882 | None:intergenic | 40.0% | |
| ACCGTACCATACTATGAGTA+AGG | + | chr8_3:61635862-61635881 | Msa1300190:CDS | 40.0% | |
| GCCTTACTCATAGTATGGTA+CGG | - | chr8_3:61635866-61635885 | None:intergenic | 40.0% | |
| TGTGTGTACTTCAGTCTAAC+AGG | - | chr8_3:61636165-61636184 | None:intergenic | 40.0% | |
| ! | TGTTCTGCCAATAGTGTTGA+GGG | + | chr8_3:61636231-61636250 | Msa1300190:CDS | 40.0% |
| CCGACATCCTACTCGTTATT+TGG | - | chr8_3:61635587-61635606 | None:intergenic | 45.0% | |
| ATGCACTTCTACCAAGGTAC+TGG | - | chr8_3:61635796-61635815 | None:intergenic | 45.0% | |
| TGGTACGGTGGAAAATCAAC+GGG | - | chr8_3:61635851-61635870 | None:intergenic | 45.0% | |
| TGAATCGACGGAATCACCAA+AGG | + | chr8_3:61635928-61635947 | Msa1300190:CDS | 45.0% | |
| AAGGCAGCAGGTATTTCCTA+CGG | - | chr8_3:61636075-61636094 | None:intergenic | 45.0% | |
| TAGGAAATACCTGCTGCCTT+TGG | + | chr8_3:61636075-61636094 | Msa1300190:intron | 45.0% | |
| ! | CCTGTACCGAAGTTGTTGTT+CGG | + | chr8_3:61636189-61636208 | Msa1300190:CDS | 45.0% |
| CCTCTTCCGAACAACAACTT+CGG | - | chr8_3:61636198-61636217 | None:intergenic | 45.0% | |
| ! | AGTTGTTGTTCGGAAGAGGT+TGG | + | chr8_3:61636199-61636218 | Msa1300190:CDS | 45.0% |
| CTGTTCTGCCAATAGTGTTG+AGG | + | chr8_3:61636230-61636249 | Msa1300190:CDS | 45.0% | |
| CCGACATCCTACTCGTTATT+TGG | - | chr8_3:61635587-61635606 | None:intergenic | 45.0% | |
| ATGCACTTCTACCAAGGTAC+TGG | - | chr8_3:61635796-61635815 | None:intergenic | 45.0% | |
| TGGTACGGTGGAAAATCAAC+GGG | - | chr8_3:61635851-61635870 | None:intergenic | 45.0% | |
| TGAATCGACGGAATCACCAA+AGG | + | chr8_3:61635928-61635947 | Msa1300190:CDS | 45.0% | |
| AAGGCAGCAGGTATTTCCTA+CGG | - | chr8_3:61636075-61636094 | None:intergenic | 45.0% | |
| TAGGAAATACCTGCTGCCTT+TGG | + | chr8_3:61636075-61636094 | Msa1300190:intron | 45.0% | |
| ! | CCTGTACCGAAGTTGTTGTT+CGG | + | chr8_3:61636189-61636208 | Msa1300190:CDS | 45.0% |
| CCTCTTCCGAACAACAACTT+CGG | - | chr8_3:61636198-61636217 | None:intergenic | 45.0% | |
| ! | AGTTGTTGTTCGGAAGAGGT+TGG | + | chr8_3:61636199-61636218 | Msa1300190:CDS | 45.0% |
| CTGTTCTGCCAATAGTGTTG+AGG | + | chr8_3:61636230-61636249 | Msa1300190:CDS | 45.0% | |
| TCTACGAGCTATCGGAGCAA+TGG | + | chr8_3:61635639-61635658 | Msa1300190:CDS | 50.0% | |
| TCCAACCATCGGTCAACAAC+GGG | - | chr8_3:61635724-61635743 | None:intergenic | 50.0% | |
| CTCCAACCATCGGTCAACAA+CGG | - | chr8_3:61635725-61635744 | None:intergenic | 50.0% | |
| AGGAATTTGCCAAAGGCAGC+AGG | - | chr8_3:61636087-61636106 | None:intergenic | 50.0% | |
| CCGAACAACAACTTCGGTAC+AGG | - | chr8_3:61636192-61636211 | None:intergenic | 50.0% | |
| ! | CCGAAGTTGTTGTTCGGAAG+AGG | + | chr8_3:61636195-61636214 | Msa1300190:CDS | 50.0% |
| ! | TCTGCCAATAGTGTTGAGGG+CGG | + | chr8_3:61636234-61636253 | Msa1300190:CDS | 50.0% |
| TCTACGAGCTATCGGAGCAA+TGG | + | chr8_3:61635639-61635658 | Msa1300190:CDS | 50.0% | |
| TCCAACCATCGGTCAACAAC+GGG | - | chr8_3:61635724-61635743 | None:intergenic | 50.0% | |
| CTCCAACCATCGGTCAACAA+CGG | - | chr8_3:61635725-61635744 | None:intergenic | 50.0% | |
| AGGAATTTGCCAAAGGCAGC+AGG | - | chr8_3:61636087-61636106 | None:intergenic | 50.0% | |
| CCGAACAACAACTTCGGTAC+AGG | - | chr8_3:61636192-61636211 | None:intergenic | 50.0% | |
| ! | CCGAAGTTGTTGTTCGGAAG+AGG | + | chr8_3:61636195-61636214 | Msa1300190:CDS | 50.0% |
| ! | TCTGCCAATAGTGTTGAGGG+CGG | + | chr8_3:61636234-61636253 | Msa1300190:CDS | 50.0% |
| ATCGGAGCAATGGCTCTTGC+TGG | + | chr8_3:61635649-61635668 | Msa1300190:CDS | 55.0% | |
| GAGCAATGGCTCTTGCTGGA+TGG | + | chr8_3:61635653-61635672 | Msa1300190:CDS | 55.0% | |
| TGGCTCTTGCTGGATGGTGA+TGG | + | chr8_3:61635659-61635678 | Msa1300190:CDS | 55.0% | |
| GTCACCGCCCTCAACACTAT+TGG | - | chr8_3:61636241-61636260 | None:intergenic | 55.0% | |
| ATCGGAGCAATGGCTCTTGC+TGG | + | chr8_3:61635649-61635668 | Msa1300190:CDS | 55.0% | |
| GAGCAATGGCTCTTGCTGGA+TGG | + | chr8_3:61635653-61635672 | Msa1300190:CDS | 55.0% | |
| TGGCTCTTGCTGGATGGTGA+TGG | + | chr8_3:61635659-61635678 | Msa1300190:CDS | 55.0% | |
| GTCACCGCCCTCAACACTAT+TGG | - | chr8_3:61636241-61636260 | None:intergenic | 55.0% | |
| GATCGCCCGTTGTTGACCGA+TGG | + | chr8_3:61635716-61635735 | Msa1300190:CDS | 60.0% | |
| GCCCGTTGTTGACCGATGGT+TGG | + | chr8_3:61635720-61635739 | Msa1300190:CDS | 60.0% | |
| TGTTGAGGGCGGTGACGTGT+TGG | + | chr8_3:61636245-61636264 | Msa1300190:CDS | 60.0% | |
| GATCGCCCGTTGTTGACCGA+TGG | + | chr8_3:61635716-61635735 | Msa1300190:CDS | 60.0% | |
| GCCCGTTGTTGACCGATGGT+TGG | + | chr8_3:61635720-61635739 | Msa1300190:CDS | 60.0% | |
| TGTTGAGGGCGGTGACGTGT+TGG | + | chr8_3:61636245-61636264 | Msa1300190:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 61635330 | 61636323 | 61635330 | ID=Msa1300190;Name=Msa1300190 |
| chr8_3 | mRNA | 61635330 | 61636323 | 61635330 | ID=Msa1300190-mRNA-1;Parent=Msa1300190;Name=Msa1300190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|225 |
| chr8_3 | exon | 61635330 | 61635410 | 61635330 | ID=Msa1300190-mRNA-1:exon:18185;Parent=Msa1300190-mRNA-1 |
| chr8_3 | exon | 61635599 | 61635949 | 61635599 | ID=Msa1300190-mRNA-1:exon:18186;Parent=Msa1300190-mRNA-1 |
| chr8_3 | exon | 61636078 | 61636323 | 61636078 | ID=Msa1300190-mRNA-1:exon:18187;Parent=Msa1300190-mRNA-1 |
| chr8_3 | CDS | 61635330 | 61635410 | 61635330 | ID=Msa1300190-mRNA-1:cds;Parent=Msa1300190-mRNA-1 |
| chr8_3 | CDS | 61635599 | 61635949 | 61635599 | ID=Msa1300190-mRNA-1:cds;Parent=Msa1300190-mRNA-1 |
| chr8_3 | CDS | 61636078 | 61636323 | 61636078 | ID=Msa1300190-mRNA-1:cds;Parent=Msa1300190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
