Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1303290 | sp|P46602|HAT3_ARATH | 58.779 | 131 | 50 | 3 | 78 | 207 | 147 | 274 | 1.31e-39 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1303290 | G7JT79 | 93.182 | 220 | 11 | 2 | 1 | 220 | 1 | 216 | 7.79e-137 | 392 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1303290 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1303290 | MtrunA17_Chr4g0071411 | 93.182 | 220 | 11 | 2 | 1 | 220 | 1 | 216 | 1.50e-140 | 392 |
| Msa1303290 | MtrunA17_Chr8g0385491 | 84.466 | 103 | 12 | 2 | 1 | 103 | 83 | 181 | 5.70e-46 | 150 |
| Msa1303290 | MtrunA17_Chr5g0399491 | 53.741 | 147 | 58 | 2 | 61 | 207 | 112 | 248 | 1.50e-41 | 142 |
| Msa1303290 | MtrunA17_Chr5g0400781 | 63.077 | 130 | 36 | 4 | 80 | 207 | 115 | 234 | 1.55e-40 | 139 |
| Msa1303290 | MtrunA17_Chr4g0055851 | 55.000 | 140 | 54 | 2 | 80 | 213 | 102 | 238 | 3.35e-40 | 139 |
| Msa1303290 | MtrunA17_Chr8g0335131 | 63.248 | 117 | 40 | 1 | 91 | 207 | 145 | 258 | 4.71e-39 | 136 |
| Msa1303290 | MtrunA17_Chr1g0175651 | 49.367 | 158 | 70 | 3 | 50 | 207 | 118 | 265 | 1.27e-37 | 132 |
| Msa1303290 | MtrunA17_Chr2g0299031 | 43.961 | 207 | 94 | 5 | 11 | 215 | 15 | 201 | 1.72e-37 | 130 |
| Msa1303290 | MtrunA17_Chr7g0258831 | 48.101 | 158 | 73 | 2 | 50 | 207 | 123 | 271 | 2.10e-37 | 132 |
| Msa1303290 | MtrunA17_Chr4g0054421 | 60.684 | 117 | 42 | 2 | 91 | 207 | 126 | 238 | 7.51e-37 | 130 |
| Msa1303290 | MtrunA17_Chr2g0308611 | 53.623 | 138 | 49 | 3 | 79 | 204 | 187 | 321 | 6.25e-36 | 129 |
| Msa1303290 | MtrunA17_Chr1g0151971 | 60.345 | 116 | 44 | 2 | 91 | 206 | 129 | 242 | 1.85e-35 | 126 |
| Msa1303290 | MtrunA17_Chr4g0044091 | 49.206 | 126 | 58 | 3 | 86 | 207 | 59 | 182 | 1.33e-30 | 111 |
| Msa1303290 | MtrunA17_Chr3g0135331 | 51.587 | 126 | 48 | 3 | 86 | 207 | 139 | 255 | 4.39e-28 | 107 |
| Msa1303290 | MtrunA17_Chr7g0217111 | 48.864 | 88 | 45 | 0 | 91 | 178 | 79 | 166 | 3.08e-19 | 83.6 |
| Msa1303290 | MtrunA17_Chr3g0119291 | 47.368 | 95 | 43 | 1 | 92 | 179 | 59 | 153 | 5.57e-19 | 82.4 |
| Msa1303290 | MtrunA17_Chr8g0362751 | 48.936 | 94 | 41 | 1 | 92 | 178 | 89 | 182 | 1.00e-18 | 82.4 |
| Msa1303290 | MtrunA17_Chr5g0415941 | 46.809 | 94 | 43 | 1 | 92 | 178 | 87 | 180 | 2.12e-18 | 82.0 |
| Msa1303290 | MtrunA17_Chr7g0265521 | 42.453 | 106 | 61 | 0 | 73 | 178 | 44 | 149 | 2.26e-18 | 80.5 |
| Msa1303290 | MtrunA17_Chr6g0450991 | 48.387 | 93 | 41 | 1 | 92 | 177 | 67 | 159 | 7.56e-18 | 80.1 |
| Msa1303290 | MtrunA17_Chr6g0453021 | 47.872 | 94 | 42 | 1 | 92 | 178 | 96 | 189 | 1.55e-17 | 79.0 |
| Msa1303290 | MtrunA17_Chr8g0381741 | 38.931 | 131 | 66 | 2 | 91 | 214 | 53 | 176 | 1.79e-17 | 79.3 |
| Msa1303290 | MtrunA17_Chr8g0362151 | 46.591 | 88 | 47 | 0 | 92 | 179 | 77 | 164 | 2.12e-17 | 78.6 |
| Msa1303290 | MtrunA17_Chr5g0416391 | 45.455 | 88 | 48 | 0 | 92 | 179 | 77 | 164 | 8.38e-17 | 77.0 |
| Msa1303290 | MtrunA17_Chr3g0123691 | 40.385 | 104 | 53 | 2 | 82 | 178 | 52 | 153 | 2.04e-15 | 73.6 |
| Msa1303290 | MtrunA17_Chr1g0179581 | 38.318 | 107 | 65 | 1 | 68 | 174 | 5 | 110 | 2.59e-15 | 69.3 |
| Msa1303290 | MtrunA17_Chr4g0060031 | 45.161 | 93 | 44 | 1 | 92 | 177 | 95 | 187 | 1.03e-14 | 72.0 |
| Msa1303290 | MtrunA17_Chr8g0346251 | 35.246 | 122 | 72 | 1 | 65 | 179 | 7 | 128 | 2.89e-13 | 67.0 |
| Msa1303290 | MtrunA17_Chr3g0127511 | 42.857 | 84 | 48 | 0 | 95 | 178 | 41 | 124 | 1.85e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1303290 | AT3G60390.1 | 58.779 | 131 | 50 | 3 | 78 | 207 | 147 | 274 | 1.33e-40 | 141 |
| Msa1303290 | AT4G37790.1 | 40.323 | 248 | 96 | 8 | 1 | 207 | 1 | 237 | 3.09e-40 | 139 |
| Msa1303290 | AT4G16780.1 | 57.143 | 126 | 50 | 2 | 81 | 206 | 119 | 240 | 3.74e-38 | 134 |
| Msa1303290 | AT5G06710.1 | 52.593 | 135 | 50 | 2 | 78 | 207 | 176 | 301 | 1.21e-37 | 134 |
| Msa1303290 | AT5G47370.1 | 50.704 | 142 | 65 | 2 | 78 | 217 | 116 | 254 | 6.86e-36 | 128 |
| Msa1303290 | AT2G44910.1 | 58.120 | 117 | 46 | 1 | 91 | 207 | 162 | 275 | 1.36e-35 | 128 |
| Msa1303290 | AT2G22800.1 | 39.331 | 239 | 98 | 7 | 1 | 207 | 1 | 224 | 1.44e-35 | 127 |
| Msa1303290 | AT4G17460.1 | 43.275 | 171 | 78 | 3 | 47 | 217 | 106 | 257 | 3.53e-35 | 126 |
| Msa1303290 | AT1G70920.2 | 42.958 | 142 | 68 | 2 | 67 | 207 | 14 | 143 | 2.88e-28 | 105 |
| Msa1303290 | AT1G70920.1 | 42.958 | 142 | 68 | 2 | 67 | 207 | 44 | 173 | 3.49e-28 | 106 |
| Msa1303290 | AT2G01430.1 | 46.667 | 135 | 61 | 2 | 78 | 207 | 120 | 248 | 4.64e-28 | 107 |
| Msa1303290 | AT5G06710.4 | 59.155 | 71 | 29 | 0 | 73 | 143 | 171 | 241 | 1.10e-21 | 90.5 |
| Msa1303290 | AT1G26960.1 | 40.000 | 120 | 71 | 1 | 61 | 179 | 39 | 158 | 9.34e-19 | 82.4 |
| Msa1303290 | AT1G69780.1 | 48.864 | 88 | 45 | 0 | 92 | 179 | 85 | 172 | 1.98e-17 | 79.3 |
| Msa1303290 | AT3G01470.1 | 48.387 | 93 | 41 | 2 | 92 | 177 | 68 | 160 | 6.96e-17 | 77.4 |
| Msa1303290 | AT3G01220.1 | 50.633 | 79 | 39 | 0 | 92 | 170 | 87 | 165 | 7.38e-17 | 77.8 |
| Msa1303290 | AT2G01430.2 | 48.864 | 88 | 38 | 2 | 78 | 160 | 120 | 205 | 8.45e-17 | 76.3 |
| Msa1303290 | AT5G15150.1 | 48.936 | 94 | 41 | 1 | 92 | 178 | 115 | 208 | 1.95e-16 | 77.0 |
| Msa1303290 | AT2G46680.2 | 43.158 | 95 | 50 | 1 | 83 | 177 | 27 | 117 | 6.03e-16 | 74.7 |
| Msa1303290 | AT2G46680.1 | 43.158 | 95 | 50 | 1 | 83 | 177 | 27 | 117 | 6.65e-16 | 74.7 |
| Msa1303290 | AT5G03790.1 | 42.708 | 96 | 55 | 0 | 85 | 180 | 70 | 165 | 1.68e-15 | 73.2 |
| Msa1303290 | AT5G65310.1 | 43.158 | 95 | 47 | 1 | 92 | 179 | 72 | 166 | 1.77e-15 | 74.3 |
| Msa1303290 | AT5G65310.2 | 43.158 | 95 | 47 | 1 | 92 | 179 | 54 | 148 | 1.89e-15 | 73.9 |
| Msa1303290 | AT4G40060.1 | 44.086 | 93 | 48 | 1 | 92 | 180 | 59 | 151 | 5.69e-15 | 72.4 |
| Msa1303290 | AT2G22430.1 | 44.211 | 95 | 46 | 1 | 92 | 179 | 62 | 156 | 6.72e-15 | 72.4 |
| Msa1303290 | AT5G03790.2 | 44.444 | 90 | 50 | 0 | 85 | 174 | 70 | 159 | 3.61e-14 | 68.9 |
| Msa1303290 | AT3G61890.1 | 40.964 | 83 | 49 | 0 | 95 | 177 | 33 | 115 | 2.50e-13 | 67.4 |
| Msa1303290 | AT2G36610.1 | 38.596 | 114 | 62 | 2 | 75 | 180 | 54 | 167 | 6.72e-13 | 65.1 |
| Msa1303290 | AT4G36740.2 | 40.625 | 96 | 57 | 0 | 83 | 178 | 47 | 142 | 5.40e-12 | 63.2 |
| Msa1303290 | AT4G36740.1 | 40.625 | 96 | 57 | 0 | 83 | 178 | 46 | 141 | 5.49e-12 | 63.2 |
| Msa1303290 | AT2G18550.1 | 38.679 | 106 | 63 | 1 | 73 | 178 | 44 | 147 | 5.85e-12 | 63.2 |
| Msa1303290 | AT5G53980.1 | 43.333 | 90 | 49 | 2 | 90 | 178 | 9 | 97 | 7.33e-12 | 61.6 |
| Msa1303290 | AT5G66700.1 | 45.833 | 72 | 39 | 0 | 92 | 163 | 71 | 142 | 2.52e-11 | 61.6 |
Find 35 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGTGAAAGATTCAATT+TGG | 0.267895 | 8_3:-66365575 | Msa1303290:CDS |
| ACGTTCATAGGTTCTCCTTT+TGG | 0.352374 | 8_3:+66365619 | None:intergenic |
| TTGAGGTTTGGTTTCAGAAC+AGG | 0.362659 | 8_3:-66365081 | Msa1303290:CDS |
| GTCTTGTCTTTAACCTCAAT+TGG | 0.365222 | 8_3:+66365107 | None:intergenic |
| TTGTTGTTGTGTACGTTCAT+AGG | 0.371543 | 8_3:+66365607 | None:intergenic |
| TCTACGATCGTTGTTGTTGT+TGG | 0.376794 | 8_3:+66365501 | None:intergenic |
| AAGATTAAAGAAGGAATTGC+AGG | 0.404223 | 8_3:-66364719 | Msa1303290:CDS |
| AGACAAGACAAATTGAGGTT+TGG | 0.409339 | 8_3:-66365093 | Msa1303290:CDS |
| ACAGGTTTATGTCTAGGTCT+TGG | 0.420666 | 8_3:-66365727 | Msa1303290:CDS |
| TTATGTCTAGGTCTTGGAAT+AGG | 0.424289 | 8_3:-66365721 | Msa1303290:CDS |
| TTGCAGGAACTCAAAGTTGT+TGG | 0.456628 | 8_3:-66364703 | Msa1303290:CDS |
| TAGCACTTGCTGACCAATTG+AGG | 0.458161 | 8_3:-66365120 | Msa1303290:CDS |
| GCATTCTTCATCACTTTCCA+TGG | 0.470187 | 8_3:+66365753 | None:intergenic |
| GTTAAAGACAAGACAAATTG+AGG | 0.472426 | 8_3:-66365098 | Msa1303290:CDS |
| ATACCGGATTAAGAGTGTTA+TGG | 0.475608 | 8_3:+66365422 | None:intergenic |
| AGTGATGAAGAATGCAATAC+AGG | 0.485322 | 8_3:-66365745 | Msa1303290:CDS |
| GCTCCATAACACTCTTAATC+CGG | 0.495490 | 8_3:-66365425 | Msa1303290:intron |
| AAGAGTGTTATGGAGCTTGA+AGG | 0.507942 | 8_3:+66365432 | None:intergenic |
| TTGGACAAAGCTCAAAAGCT+AGG | 0.524782 | 8_3:+66365638 | None:intergenic |
| GACTAAGCTGAAGCAGATAG+AGG | 0.526640 | 8_3:-66364794 | Msa1303290:CDS |
| TGAGAACAAAAGATTAAAGA+AGG | 0.527592 | 8_3:-66364728 | Msa1303290:CDS |
| TCAAAACAAGGTGCCATCAC+AGG | 0.535661 | 8_3:+66365661 | None:intergenic |
| TGATCTTCATTATGCTTCAA+CGG | 0.537154 | 8_3:+66364598 | None:intergenic |
| TGCAATACAGGTTTATGTCT+AGG | 0.537810 | 8_3:-66365733 | Msa1303290:CDS |
| CTTGAAGGTGCTCTCAAGCA+TGG | 0.539476 | 8_3:+66365447 | None:intergenic |
| ATTAGTGAATAAACCTGTGA+TGG | 0.545697 | 8_3:-66365674 | Msa1303290:CDS |
| GATAAACGTTGAGGGCATAA+CGG | 0.556727 | 8_3:+66364673 | None:intergenic |
| GGTTTCAGAACAGGAGAGCA+AGG | 0.572572 | 8_3:-66365072 | Msa1303290:intron |
| TCTTGGAATAGGTGCAACAA+AGG | 0.613459 | 8_3:-66365710 | Msa1303290:CDS |
| ACAGTACTATGAGTCACCAC+TGG | 0.648715 | 8_3:+66364643 | None:intergenic |
| TAAGCTGAAGCAGATAGAGG+TGG | 0.656332 | 8_3:-66364791 | Msa1303290:CDS |
| AAAGAAACTGAGGCTAACAA+AGG | 0.656758 | 8_3:-66365479 | Msa1303290:CDS |
| TCAAAAGCTAGGTCAAAACA+AGG | 0.669862 | 8_3:+66365649 | None:intergenic |
| ACGTTTATCATCAAAACCAG+TGG | 0.690620 | 8_3:-66364659 | Msa1303290:CDS |
| ACGATCGTAGAAAGAAACTG+AGG | 0.720750 | 8_3:-66365489 | Msa1303290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTATTATTTTTAA+TGG | - | chr8_3:66365058-66365077 | Msa1303290:intron | 0.0% |
| !!! | ATTATTATTATTATTTTTAA+TGG | - | chr8_3:66365058-66365077 | Msa1303290:intron | 0.0% |
| !!! | TACATATTATAGAGAATTTT+TGG | + | chr8_3:66364954-66364973 | None:intergenic | 15.0% |
| !!! | TAATTTTTCTTCATATTATC+TGG | - | chr8_3:66365354-66365373 | Msa1303290:intron | 15.0% |
| !!! | AATTTTTCTTCATATTATCT+GGG | - | chr8_3:66365355-66365374 | Msa1303290:intron | 15.0% |
| !! | TACAACAATTTATAAACTAA+TGG | + | chr8_3:66365501-66365520 | None:intergenic | 15.0% |
| !! | TGTATTTATTTATATAACAC+AGG | - | chr8_3:66365517-66365536 | Msa1303290:CDS | 15.0% |
| !!! | TACATATTATAGAGAATTTT+TGG | + | chr8_3:66364954-66364973 | None:intergenic | 15.0% |
| !!! | TAATTTTTCTTCATATTATC+TGG | - | chr8_3:66365354-66365373 | Msa1303290:intron | 15.0% |
| !!! | AATTTTTCTTCATATTATCT+GGG | - | chr8_3:66365355-66365374 | Msa1303290:intron | 15.0% |
| !! | TACAACAATTTATAAACTAA+TGG | + | chr8_3:66365501-66365520 | None:intergenic | 15.0% |
| !! | TGTATTTATTTATATAACAC+AGG | - | chr8_3:66365517-66365536 | Msa1303290:CDS | 15.0% |
| !!! | ACGTTACATTTTGATAATAT+TGG | + | chr8_3:66364791-66364810 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTTCTATATGACA+AGG | - | chr8_3:66365135-66365154 | Msa1303290:intron | 20.0% |
| !!! | TTAGTTTTTCTATATGACAA+GGG | - | chr8_3:66365136-66365155 | Msa1303290:intron | 20.0% |
| !!! | ACGTTACATTTTGATAATAT+TGG | + | chr8_3:66364791-66364810 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTTCTATATGACA+AGG | - | chr8_3:66365135-66365154 | Msa1303290:intron | 20.0% |
| !!! | TTAGTTTTTCTATATGACAA+GGG | - | chr8_3:66365136-66365155 | Msa1303290:intron | 20.0% |
| !! | TTTTGGTATGAATGAATGAA+TGG | + | chr8_3:66364937-66364956 | None:intergenic | 25.0% |
| ! | TGTCATATTGTGTATGTATA+AGG | - | chr8_3:66364996-66365015 | Msa1303290:intron | 25.0% |
| !!! | TTTTGGTTTCATATATATGC+AGG | - | chr8_3:66365181-66365200 | Msa1303290:intron | 25.0% |
| ! | TGAGAACAAAAGATTAAAGA+AGG | - | chr8_3:66365605-66365624 | Msa1303290:CDS | 25.0% |
| !! | TTTTGGTATGAATGAATGAA+TGG | + | chr8_3:66364937-66364956 | None:intergenic | 25.0% |
| ! | TGTCATATTGTGTATGTATA+AGG | - | chr8_3:66364996-66365015 | Msa1303290:intron | 25.0% |
| !!! | TTTTGGTTTCATATATATGC+AGG | - | chr8_3:66365181-66365200 | Msa1303290:intron | 25.0% |
| ! | TGAGAACAAAAGATTAAAGA+AGG | - | chr8_3:66365605-66365624 | Msa1303290:CDS | 25.0% |
| ATTAGTGAATAAACCTGTGA+TGG | - | chr8_3:66364659-66364678 | Msa1303290:CDS | 30.0% | |
| CAAAGGTGAAAGATTCAATT+TGG | - | chr8_3:66364758-66364777 | Msa1303290:CDS | 30.0% | |
| ATGAATGAATGAATGGATAC+CGG | + | chr8_3:66364930-66364949 | None:intergenic | 30.0% | |
| GTTAAAGACAAGACAAATTG+AGG | - | chr8_3:66365235-66365254 | Msa1303290:intron | 30.0% | |
| ! | CTATATGTTGATATCGATTG+CGG | - | chr8_3:66365443-66365462 | Msa1303290:CDS | 30.0% |
| AAGATTAAAGAAGGAATTGC+AGG | - | chr8_3:66365614-66365633 | Msa1303290:CDS | 30.0% | |
| !! | GTTTTGATGATAAACGTTGA+GGG | + | chr8_3:66365671-66365690 | None:intergenic | 30.0% |
| TGATCTTCATTATGCTTCAA+CGG | + | chr8_3:66365738-66365757 | None:intergenic | 30.0% | |
| ATTAGTGAATAAACCTGTGA+TGG | - | chr8_3:66364659-66364678 | Msa1303290:CDS | 30.0% | |
| CAAAGGTGAAAGATTCAATT+TGG | - | chr8_3:66364758-66364777 | Msa1303290:CDS | 30.0% | |
| ATGAATGAATGAATGGATAC+CGG | + | chr8_3:66364930-66364949 | None:intergenic | 30.0% | |
| GTTAAAGACAAGACAAATTG+AGG | - | chr8_3:66365235-66365254 | Msa1303290:intron | 30.0% | |
| ! | CTATATGTTGATATCGATTG+CGG | - | chr8_3:66365443-66365462 | Msa1303290:CDS | 30.0% |
| AAGATTAAAGAAGGAATTGC+AGG | - | chr8_3:66365614-66365633 | Msa1303290:CDS | 30.0% | |
| !! | GTTTTGATGATAAACGTTGA+GGG | + | chr8_3:66365671-66365690 | None:intergenic | 30.0% |
| TGATCTTCATTATGCTTCAA+CGG | + | chr8_3:66365738-66365757 | None:intergenic | 30.0% | |
| AGTGATGAAGAATGCAATAC+AGG | - | chr8_3:66364588-66364607 | Msa1303290:CDS | 35.0% | |
| TGCAATACAGGTTTATGTCT+AGG | - | chr8_3:66364600-66364619 | Msa1303290:CDS | 35.0% | |
| TTATGTCTAGGTCTTGGAAT+AGG | - | chr8_3:66364612-66364631 | Msa1303290:CDS | 35.0% | |
| TCAAAAGCTAGGTCAAAACA+AGG | + | chr8_3:66364687-66364706 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTGTACGTTCAT+AGG | + | chr8_3:66364729-66364748 | None:intergenic | 35.0% |
| AACAACAACAACAACAGCAA+AGG | - | chr8_3:66364741-66364760 | Msa1303290:CDS | 35.0% | |
| AAAGAAACTGAGGCTAACAA+AGG | - | chr8_3:66364854-66364873 | Msa1303290:intron | 35.0% | |
| !! | ATACCGGATTAAGAGTGTTA+TGG | + | chr8_3:66364914-66364933 | None:intergenic | 35.0% |
| GTAGAAATGAGTTTATGCGT+TGG | - | chr8_3:66365158-66365177 | Msa1303290:intron | 35.0% | |
| !!! | ATGAGTTTATGCGTTGGTTT+TGG | - | chr8_3:66365164-66365183 | Msa1303290:intron | 35.0% |
| GTCTTGTCTTTAACCTCAAT+TGG | + | chr8_3:66365229-66365248 | None:intergenic | 35.0% | |
| AGACAAGACAAATTGAGGTT+TGG | - | chr8_3:66365240-66365259 | Msa1303290:intron | 35.0% | |
| !! | GGTTTTGATGATAAACGTTG+AGG | + | chr8_3:66365672-66365691 | None:intergenic | 35.0% |
| ACGTTTATCATCAAAACCAG+TGG | - | chr8_3:66365674-66365693 | Msa1303290:CDS | 35.0% | |
| AGTGATGAAGAATGCAATAC+AGG | - | chr8_3:66364588-66364607 | Msa1303290:CDS | 35.0% | |
| TGCAATACAGGTTTATGTCT+AGG | - | chr8_3:66364600-66364619 | Msa1303290:CDS | 35.0% | |
| TTATGTCTAGGTCTTGGAAT+AGG | - | chr8_3:66364612-66364631 | Msa1303290:CDS | 35.0% | |
| TCAAAAGCTAGGTCAAAACA+AGG | + | chr8_3:66364687-66364706 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGTGTACGTTCAT+AGG | + | chr8_3:66364729-66364748 | None:intergenic | 35.0% |
| AACAACAACAACAACAGCAA+AGG | - | chr8_3:66364741-66364760 | Msa1303290:CDS | 35.0% | |
| AAAGAAACTGAGGCTAACAA+AGG | - | chr8_3:66364854-66364873 | Msa1303290:intron | 35.0% | |
| !! | ATACCGGATTAAGAGTGTTA+TGG | + | chr8_3:66364914-66364933 | None:intergenic | 35.0% |
| GTAGAAATGAGTTTATGCGT+TGG | - | chr8_3:66365158-66365177 | Msa1303290:intron | 35.0% | |
| !!! | ATGAGTTTATGCGTTGGTTT+TGG | - | chr8_3:66365164-66365183 | Msa1303290:intron | 35.0% |
| GTCTTGTCTTTAACCTCAAT+TGG | + | chr8_3:66365229-66365248 | None:intergenic | 35.0% | |
| AGACAAGACAAATTGAGGTT+TGG | - | chr8_3:66365240-66365259 | Msa1303290:intron | 35.0% | |
| !! | GGTTTTGATGATAAACGTTG+AGG | + | chr8_3:66365672-66365691 | None:intergenic | 35.0% |
| ACGTTTATCATCAAAACCAG+TGG | - | chr8_3:66365674-66365693 | Msa1303290:CDS | 35.0% | |
| ACAGGTTTATGTCTAGGTCT+TGG | - | chr8_3:66364606-66364625 | Msa1303290:CDS | 40.0% | |
| TCTTGGAATAGGTGCAACAA+AGG | - | chr8_3:66364623-66364642 | Msa1303290:CDS | 40.0% | |
| TTGGACAAAGCTCAAAAGCT+AGG | + | chr8_3:66364698-66364717 | None:intergenic | 40.0% | |
| !! | GCTTTTGAGCTTTGTCCAAA+AGG | - | chr8_3:66364699-66364718 | Msa1303290:CDS | 40.0% |
| ! | ACGTTCATAGGTTCTCCTTT+TGG | + | chr8_3:66364717-66364736 | None:intergenic | 40.0% |
| ! | TCTACGATCGTTGTTGTTGT+TGG | + | chr8_3:66364835-66364854 | None:intergenic | 40.0% |
| ACGATCGTAGAAAGAAACTG+AGG | - | chr8_3:66364844-66364863 | Msa1303290:intron | 40.0% | |
| !! | AAGAGTGTTATGGAGCTTGA+AGG | + | chr8_3:66364904-66364923 | None:intergenic | 40.0% |
| GCTCCATAACACTCTTAATC+CGG | - | chr8_3:66364908-66364927 | Msa1303290:intron | 40.0% | |
| ! | TTGAGGTTTGGTTTCAGAAC+AGG | - | chr8_3:66365252-66365271 | Msa1303290:intron | 40.0% |
| TTGCAGGAACTCAAAGTTGT+TGG | - | chr8_3:66365630-66365649 | Msa1303290:CDS | 40.0% | |
| ! | GATAAACGTTGAGGGCATAA+CGG | + | chr8_3:66365663-66365682 | None:intergenic | 40.0% |
| ACAGGTTTATGTCTAGGTCT+TGG | - | chr8_3:66364606-66364625 | Msa1303290:CDS | 40.0% | |
| TCTTGGAATAGGTGCAACAA+AGG | - | chr8_3:66364623-66364642 | Msa1303290:CDS | 40.0% | |
| TTGGACAAAGCTCAAAAGCT+AGG | + | chr8_3:66364698-66364717 | None:intergenic | 40.0% | |
| !! | GCTTTTGAGCTTTGTCCAAA+AGG | - | chr8_3:66364699-66364718 | Msa1303290:CDS | 40.0% |
| ! | ACGTTCATAGGTTCTCCTTT+TGG | + | chr8_3:66364717-66364736 | None:intergenic | 40.0% |
| ! | TCTACGATCGTTGTTGTTGT+TGG | + | chr8_3:66364835-66364854 | None:intergenic | 40.0% |
| ACGATCGTAGAAAGAAACTG+AGG | - | chr8_3:66364844-66364863 | Msa1303290:intron | 40.0% | |
| !! | AAGAGTGTTATGGAGCTTGA+AGG | + | chr8_3:66364904-66364923 | None:intergenic | 40.0% |
| GCTCCATAACACTCTTAATC+CGG | - | chr8_3:66364908-66364927 | Msa1303290:intron | 40.0% | |
| ! | TTGAGGTTTGGTTTCAGAAC+AGG | - | chr8_3:66365252-66365271 | Msa1303290:intron | 40.0% |
| TTGCAGGAACTCAAAGTTGT+TGG | - | chr8_3:66365630-66365649 | Msa1303290:CDS | 40.0% | |
| ! | GATAAACGTTGAGGGCATAA+CGG | + | chr8_3:66365663-66365682 | None:intergenic | 40.0% |
| ! | TCAAAACAAGGTGCCATCAC+AGG | + | chr8_3:66364675-66364694 | None:intergenic | 45.0% |
| ! | TAGCACTTGCTGACCAATTG+AGG | - | chr8_3:66365213-66365232 | Msa1303290:intron | 45.0% |
| GACTAAGCTGAAGCAGATAG+AGG | - | chr8_3:66365539-66365558 | Msa1303290:CDS | 45.0% | |
| TAAGCTGAAGCAGATAGAGG+TGG | - | chr8_3:66365542-66365561 | Msa1303290:CDS | 45.0% | |
| ACAGTACTATGAGTCACCAC+TGG | + | chr8_3:66365693-66365712 | None:intergenic | 45.0% | |
| ! | TCAAAACAAGGTGCCATCAC+AGG | + | chr8_3:66364675-66364694 | None:intergenic | 45.0% |
| ! | TAGCACTTGCTGACCAATTG+AGG | - | chr8_3:66365213-66365232 | Msa1303290:intron | 45.0% |
| GACTAAGCTGAAGCAGATAG+AGG | - | chr8_3:66365539-66365558 | Msa1303290:CDS | 45.0% | |
| TAAGCTGAAGCAGATAGAGG+TGG | - | chr8_3:66365542-66365561 | Msa1303290:CDS | 45.0% | |
| ACAGTACTATGAGTCACCAC+TGG | + | chr8_3:66365693-66365712 | None:intergenic | 45.0% | |
| !! | TAAATATACTAAAATTAAAT+AGG | + | chr8_3:66365401-66365420 | None:intergenic | 5.0% |
| !! | TAAATATACTAAAATTAAAT+AGG | + | chr8_3:66365401-66365420 | None:intergenic | 5.0% |
| !! | CTTGAAGGTGCTCTCAAGCA+TGG | + | chr8_3:66364889-66364908 | None:intergenic | 50.0% |
| GGTTTCAGAACAGGAGAGCA+AGG | - | chr8_3:66365261-66365280 | Msa1303290:intron | 50.0% | |
| !! | CTTGAAGGTGCTCTCAAGCA+TGG | + | chr8_3:66364889-66364908 | None:intergenic | 50.0% |
| GGTTTCAGAACAGGAGAGCA+AGG | - | chr8_3:66365261-66365280 | Msa1303290:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 66364582 | 66365773 | 66364582 | ID=Msa1303290;Name=Msa1303290 |
| chr8_3 | mRNA | 66364582 | 66365773 | 66364582 | ID=Msa1303290-mRNA-1;Parent=Msa1303290;Name=Msa1303290-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.33|1|1|1|3|0|220 |
| chr8_3 | exon | 66365426 | 66365773 | 66365426 | ID=Msa1303290-mRNA-1:exon:20157;Parent=Msa1303290-mRNA-1 |
| chr8_3 | exon | 66365073 | 66365152 | 66365073 | ID=Msa1303290-mRNA-1:exon:20156;Parent=Msa1303290-mRNA-1 |
| chr8_3 | exon | 66364582 | 66364816 | 66364582 | ID=Msa1303290-mRNA-1:exon:20155;Parent=Msa1303290-mRNA-1 |
| chr8_3 | CDS | 66365426 | 66365773 | 66365426 | ID=Msa1303290-mRNA-1:cds;Parent=Msa1303290-mRNA-1 |
| chr8_3 | CDS | 66365073 | 66365152 | 66365073 | ID=Msa1303290-mRNA-1:cds;Parent=Msa1303290-mRNA-1 |
| chr8_3 | CDS | 66364582 | 66364816 | 66364582 | ID=Msa1303290-mRNA-1:cds;Parent=Msa1303290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
