Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1304000 | XP_013445934.1 | 67.398 | 319 | 51 | 8 | 1 | 313 | 1 | 272 | 1.42e-137 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1304000 | sp|Q9FNN6|SRM1_ARATH | 40.356 | 337 | 128 | 9 | 1 | 310 | 3 | 293 | 7.76e-63 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1304000 | A0A072TS07 | 67.398 | 319 | 51 | 8 | 1 | 313 | 1 | 272 | 6.79e-138 | 400 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1304000 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1304000 | MtrunA17_Chr8g0365011 | 64.653 | 331 | 52 | 8 | 1 | 313 | 1 | 284 | 3.33e-138 | 392 |
| Msa1304000 | MtrunA17_Chr1g0162081 | 48.358 | 335 | 97 | 10 | 1 | 307 | 3 | 289 | 7.76e-86 | 259 |
| Msa1304000 | MtrunA17_Chr8g0364741 | 70.866 | 127 | 26 | 2 | 1 | 116 | 1 | 127 | 3.68e-56 | 178 |
| Msa1304000 | MtrunA17_Chr8g0364731 | 50.472 | 212 | 62 | 3 | 108 | 313 | 10 | 184 | 1.06e-55 | 179 |
| Msa1304000 | MtrunA17_Chr4g0062741 | 40.074 | 272 | 100 | 10 | 10 | 223 | 8 | 274 | 4.22e-48 | 163 |
| Msa1304000 | MtrunA17_Chr1g0210471 | 51.462 | 171 | 70 | 2 | 10 | 169 | 24 | 192 | 9.52e-48 | 160 |
| Msa1304000 | MtrunA17_Chr5g0429521 | 43.000 | 200 | 97 | 5 | 1 | 186 | 21 | 217 | 1.08e-45 | 157 |
| Msa1304000 | MtrunA17_Chr3g0104071 | 43.716 | 183 | 84 | 4 | 2 | 168 | 35 | 214 | 3.77e-44 | 153 |
| Msa1304000 | MtrunA17_Chr5g0436501 | 40.724 | 221 | 114 | 4 | 9 | 218 | 26 | 240 | 9.63e-44 | 150 |
| Msa1304000 | MtrunA17_Chr7g0241761 | 44.693 | 179 | 79 | 4 | 10 | 171 | 35 | 210 | 3.72e-42 | 147 |
| Msa1304000 | MtrunA17_Chr5g0432921 | 41.436 | 181 | 93 | 8 | 5 | 177 | 16 | 191 | 1.86e-30 | 114 |
| Msa1304000 | MtrunA17_Chr5g0432941 | 38.983 | 177 | 102 | 6 | 5 | 177 | 17 | 191 | 1.91e-28 | 109 |
| Msa1304000 | MtrunA17_Chr5g0440731 | 55.844 | 77 | 33 | 1 | 92 | 167 | 98 | 174 | 4.76e-23 | 96.7 |
| Msa1304000 | MtrunA17_Chr5g0440741 | 43.966 | 116 | 48 | 3 | 100 | 214 | 101 | 200 | 1.25e-22 | 95.5 |
| Msa1304000 | MtrunA17_Chr5g0409841 | 43.810 | 105 | 56 | 2 | 90 | 194 | 85 | 186 | 3.68e-22 | 92.8 |
| Msa1304000 | MtrunA17_Chr1g0155181 | 55.072 | 69 | 31 | 0 | 4 | 72 | 1 | 69 | 5.78e-21 | 85.5 |
| Msa1304000 | MtrunA17_Chr2g0331031 | 45.545 | 101 | 52 | 2 | 66 | 166 | 77 | 174 | 4.82e-20 | 89.4 |
| Msa1304000 | MtrunA17_Chr3g0141601 | 53.623 | 69 | 32 | 0 | 4 | 72 | 1 | 69 | 2.00e-19 | 81.6 |
| Msa1304000 | MtrunA17_Chr8g0389241 | 61.538 | 65 | 22 | 1 | 101 | 165 | 107 | 168 | 3.35e-19 | 85.9 |
| Msa1304000 | MtrunA17_Chr3g0144631 | 53.846 | 65 | 30 | 0 | 10 | 74 | 16 | 80 | 3.42e-19 | 80.5 |
| Msa1304000 | MtrunA17_Chr6g0488471 | 51.111 | 90 | 35 | 2 | 101 | 183 | 99 | 186 | 4.99e-19 | 85.5 |
| Msa1304000 | MtrunA17_Chr4g0055931 | 33.529 | 170 | 71 | 6 | 73 | 212 | 78 | 235 | 8.07e-19 | 85.5 |
| Msa1304000 | MtrunA17_Chr5g0404101 | 57.353 | 68 | 29 | 0 | 5 | 72 | 14 | 81 | 2.51e-18 | 78.6 |
| Msa1304000 | MtrunA17_Chr5g0415191 | 73.333 | 45 | 12 | 0 | 101 | 145 | 104 | 148 | 9.44e-17 | 79.3 |
| Msa1304000 | MtrunA17_Chr4g0059701 | 73.333 | 45 | 12 | 0 | 101 | 145 | 86 | 130 | 2.08e-16 | 78.2 |
| Msa1304000 | MtrunA17_Chr6g0449111 | 50.000 | 72 | 36 | 0 | 1 | 72 | 1 | 72 | 2.71e-16 | 72.8 |
| Msa1304000 | MtrunA17_Chr3g0092621 | 48.101 | 79 | 34 | 2 | 101 | 174 | 86 | 162 | 4.50e-16 | 74.7 |
| Msa1304000 | MtrunA17_Chr5g0409831 | 67.391 | 46 | 15 | 0 | 100 | 145 | 78 | 123 | 4.93e-16 | 75.9 |
| Msa1304000 | MtrunA17_Chr3g0135671 | 44.944 | 89 | 46 | 2 | 101 | 187 | 93 | 180 | 5.55e-16 | 75.9 |
| Msa1304000 | MtrunA17_Chr1g0192061 | 58.209 | 67 | 26 | 2 | 97 | 162 | 59 | 124 | 2.05e-15 | 73.2 |
| Msa1304000 | MtrunA17_Chr7g0255841 | 54.545 | 66 | 30 | 0 | 13 | 78 | 15 | 80 | 3.63e-15 | 70.1 |
| Msa1304000 | MtrunA17_Chr8g0373131 | 44.286 | 70 | 38 | 1 | 10 | 79 | 5 | 73 | 2.53e-14 | 67.0 |
| Msa1304000 | MtrunA17_Chr8g0373111 | 44.928 | 69 | 37 | 1 | 10 | 78 | 5 | 72 | 3.23e-14 | 66.6 |
| Msa1304000 | MtrunA17_Chr8g0373121 | 44.928 | 69 | 37 | 1 | 10 | 78 | 5 | 72 | 3.23e-14 | 66.6 |
| Msa1304000 | MtrunA17_Chr6g0452791 | 66.667 | 45 | 15 | 0 | 101 | 145 | 82 | 126 | 6.00e-14 | 68.9 |
| Msa1304000 | MtrunA17_Chr3g0081631 | 45.205 | 73 | 39 | 1 | 1 | 72 | 1 | 73 | 2.64e-13 | 64.7 |
| Msa1304000 | MtrunA17_Chr5g0404301 | 50.820 | 61 | 29 | 1 | 10 | 70 | 4 | 63 | 7.35e-13 | 62.8 |
| Msa1304000 | MtrunA17_Chr3g0141641 | 44.444 | 63 | 35 | 0 | 10 | 72 | 3 | 65 | 2.30e-12 | 62.4 |
| Msa1304000 | MtrunA17_Chr3g0113121 | 35.507 | 138 | 75 | 4 | 49 | 173 | 38 | 174 | 4.73e-12 | 64.3 |
| Msa1304000 | MtrunA17_Chr8g0370131 | 34.234 | 111 | 51 | 2 | 101 | 206 | 105 | 198 | 6.44e-12 | 64.3 |
| Msa1304000 | MtrunA17_Chr8g0373101 | 44.776 | 67 | 34 | 2 | 4 | 70 | 1 | 64 | 8.78e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1304000 | AT5G08520.1 | 40.356 | 337 | 128 | 9 | 1 | 310 | 3 | 293 | 7.89e-64 | 204 |
| Msa1304000 | AT5G23650.1 | 36.982 | 338 | 163 | 11 | 3 | 300 | 6 | 333 | 3.01e-47 | 162 |
| Msa1304000 | AT5G04760.1 | 42.714 | 199 | 104 | 4 | 6 | 199 | 2 | 195 | 1.63e-44 | 151 |
| Msa1304000 | AT2G38090.1 | 45.055 | 182 | 75 | 4 | 10 | 168 | 29 | 208 | 1.22e-43 | 151 |
| Msa1304000 | AT1G49010.1 | 43.925 | 214 | 78 | 7 | 1 | 176 | 1 | 210 | 3.21e-43 | 151 |
| Msa1304000 | AT5G58900.1 | 43.503 | 177 | 80 | 4 | 10 | 168 | 34 | 208 | 5.66e-43 | 149 |
| Msa1304000 | AT3G11280.2 | 46.667 | 165 | 75 | 5 | 10 | 166 | 33 | 192 | 9.55e-41 | 143 |
| Msa1304000 | AT3G11280.1 | 46.667 | 165 | 75 | 5 | 10 | 166 | 33 | 192 | 9.55e-41 | 143 |
| Msa1304000 | AT5G05790.2 | 41.899 | 179 | 79 | 3 | 7 | 168 | 28 | 198 | 1.45e-39 | 140 |
| Msa1304000 | AT5G05790.1 | 41.899 | 179 | 79 | 3 | 7 | 168 | 28 | 198 | 1.45e-39 | 140 |
| Msa1304000 | AT5G01200.1 | 41.799 | 189 | 75 | 6 | 10 | 168 | 30 | 213 | 9.53e-37 | 132 |
| Msa1304000 | AT4G09450.1 | 42.138 | 159 | 81 | 5 | 10 | 166 | 7 | 156 | 2.93e-26 | 103 |
| Msa1304000 | AT3G10580.2 | 36.500 | 200 | 94 | 8 | 10 | 197 | 8 | 186 | 7.39e-25 | 101 |
| Msa1304000 | AT3G10580.1 | 36.500 | 200 | 94 | 8 | 10 | 197 | 8 | 186 | 1.01e-24 | 101 |
| Msa1304000 | AT1G75250.2 | 54.286 | 70 | 32 | 0 | 10 | 79 | 12 | 81 | 2.13e-20 | 84.7 |
| Msa1304000 | AT1G75250.1 | 54.286 | 70 | 32 | 0 | 10 | 79 | 12 | 81 | 8.75e-20 | 84.0 |
| Msa1304000 | AT3G10590.1 | 33.871 | 186 | 101 | 7 | 4 | 172 | 1 | 181 | 2.82e-19 | 84.7 |
| Msa1304000 | AT4G39250.1 | 48.052 | 77 | 36 | 1 | 10 | 86 | 14 | 86 | 4.47e-19 | 81.3 |
| Msa1304000 | AT5G47390.1 | 56.923 | 65 | 26 | 1 | 101 | 165 | 98 | 160 | 2.46e-18 | 84.7 |
| Msa1304000 | AT5G56840.1 | 60.606 | 66 | 26 | 0 | 101 | 166 | 93 | 158 | 4.06e-18 | 82.0 |
| Msa1304000 | AT5G61620.1 | 59.091 | 66 | 25 | 1 | 101 | 166 | 110 | 173 | 6.85e-18 | 83.2 |
| Msa1304000 | AT1G70000.1 | 77.778 | 45 | 10 | 0 | 101 | 145 | 100 | 144 | 6.56e-17 | 79.3 |
| Msa1304000 | AT1G70000.2 | 77.778 | 45 | 10 | 0 | 101 | 145 | 100 | 144 | 6.56e-17 | 79.3 |
| Msa1304000 | AT2G21650.1 | 48.611 | 72 | 37 | 0 | 10 | 81 | 14 | 85 | 8.63e-17 | 75.1 |
| Msa1304000 | AT1G74840.2 | 71.111 | 45 | 13 | 0 | 101 | 145 | 98 | 142 | 1.09e-16 | 78.2 |
| Msa1304000 | AT3G16350.1 | 48.837 | 86 | 35 | 2 | 68 | 145 | 99 | 183 | 1.22e-16 | 80.1 |
| Msa1304000 | AT1G74840.1 | 71.111 | 45 | 13 | 0 | 101 | 145 | 98 | 142 | 1.38e-16 | 78.6 |
| Msa1304000 | AT1G19510.1 | 49.254 | 67 | 34 | 0 | 13 | 79 | 15 | 81 | 1.94e-16 | 73.9 |
| Msa1304000 | AT1G19000.2 | 68.889 | 45 | 14 | 0 | 101 | 145 | 104 | 148 | 3.75e-15 | 74.7 |
| Msa1304000 | AT1G19000.1 | 68.889 | 45 | 14 | 0 | 101 | 145 | 104 | 148 | 3.75e-15 | 74.7 |
| Msa1304000 | AT2G18328.1 | 52.542 | 59 | 28 | 0 | 14 | 72 | 15 | 73 | 1.06e-13 | 65.9 |
| Msa1304000 | AT3G10595.1 | 24.865 | 185 | 123 | 5 | 8 | 192 | 4 | 172 | 9.25e-12 | 63.2 |
Find 93 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACATCACTATGAGATTT+TGG | 0.187100 | 8_3:+67317326 | Msa1304000:CDS |
| TCGATTGCTTTCCCGGTAAT+TGG | 0.201394 | 8_3:-67318025 | None:intergenic |
| TCTTCTTTCTTTCTTCTCTT+TGG | 0.208364 | 8_3:-67317960 | None:intergenic |
| GATGAGCAGGTTATTTCTTA+TGG | 0.229350 | 8_3:+67317820 | Msa1304000:intron |
| TGTAGAATCGATTGCTTTCC+CGG | 0.266834 | 8_3:-67318032 | None:intergenic |
| GTATCTGCTTTCGGCGCTGC+AGG | 0.317922 | 8_3:+67318455 | Msa1304000:CDS |
| CAGAGGATAATTTGAAGTTC+TGG | 0.320137 | 8_3:-67318110 | None:intergenic |
| TCTGTTGGAACTAGAAATTT+AGG | 0.321437 | 8_3:+67318166 | Msa1304000:CDS |
| ATGGTATTGGACCAGTTTCT+TGG | 0.328363 | 8_3:+67318507 | Msa1304000:CDS |
| TGAAAGAGGAGCTGTGAAAA+AGG | 0.334187 | 8_3:+67317434 | Msa1304000:CDS |
| GGGCTTCCGGTTCTTATCAT+TGG | 0.336367 | 8_3:+67317463 | Msa1304000:CDS |
| ATGAGCAGGTTATTTCTTAT+GGG | 0.354456 | 8_3:+67317821 | Msa1304000:intron |
| GGCATATTTGTCCAAGAAAC+TGG | 0.357689 | 8_3:-67318518 | None:intergenic |
| GATATCCACAACATTGAATC+TGG | 0.364726 | 8_3:+67317354 | Msa1304000:CDS |
| TTGGATCAGGCAACCTATAT+AGG | 0.379066 | 8_3:+67318422 | Msa1304000:intron |
| CTTATGGGCGTGGAGAAGTA+TGG | 0.382631 | 8_3:+67317836 | Msa1304000:CDS |
| ATAGCTGACATCGTGTATTC+TGG | 0.383272 | 8_3:-67317987 | None:intergenic |
| GCTCCCGGACACATGGCTTA+TGG | 0.384505 | 8_3:+67318488 | Msa1304000:CDS |
| GGACACATGGCTTATGGTAT+TGG | 0.393934 | 8_3:+67318494 | Msa1304000:CDS |
| AGACGGGTTGTATCTGCTTT+CGG | 0.398815 | 8_3:+67318446 | Msa1304000:CDS |
| GCAGGGTTTCCTTCTGCTCC+CGG | 0.401027 | 8_3:+67318473 | Msa1304000:CDS |
| GAACCTCAAGGGCCAATTAC+CGG | 0.403494 | 8_3:+67318013 | Msa1304000:CDS |
| GATACAACCAGTTCTCCTAT+AGG | 0.413028 | 8_3:-67318241 | None:intergenic |
| AACAGCATCCTCGGGATGAT+TGG | 0.418808 | 8_3:-67317250 | None:intergenic |
| AGAAGTATGGAAAGGGTAAA+TGG | 0.436340 | 8_3:+67317849 | Msa1304000:CDS |
| TACAACCCGTCTTCCTATAT+AGG | 0.441091 | 8_3:-67318435 | None:intergenic |
| TTCTGTCCAATGATAAGAAC+CGG | 0.442794 | 8_3:-67317469 | None:intergenic |
| CCTATAGGTTGGTCCTCTCT+AGG | 0.443309 | 8_3:-67318226 | None:intergenic |
| GCCAGGGGTACCAATGAACT+TGG | 0.443338 | 8_3:+67318538 | Msa1304000:CDS |
| CCATCGATCAACAGCATCCT+CGG | 0.458092 | 8_3:-67317259 | None:intergenic |
| CCTAGAGAGGACCAACCTAT+AGG | 0.459240 | 8_3:+67318226 | Msa1304000:CDS |
| TCCTTCTGCTCCCGGACACA+TGG | 0.459304 | 8_3:+67318481 | Msa1304000:CDS |
| AAAATTGCGGCTGATGTGCC+CGG | 0.461117 | 8_3:+67317285 | Msa1304000:CDS |
| GGACCAACCTATAGGAGAAC+TGG | 0.467312 | 8_3:+67318234 | Msa1304000:CDS |
| GTCATAGGACCCAAGTTCAT+TGG | 0.473573 | 8_3:-67318548 | None:intergenic |
| CCCAAGTTCATTGGTACCCC+TGG | 0.474063 | 8_3:-67318539 | None:intergenic |
| TAAATTGTTTGAAAATGCAT+TGG | 0.479987 | 8_3:+67317227 | Msa1304000:CDS |
| TATCCTCTGGCTCCACCTGC+CGG | 0.481371 | 8_3:+67318124 | Msa1304000:CDS |
| AAAACTCCAGCATGTGGGAT+TGG | 0.483092 | 8_3:-67318196 | None:intergenic |
| TATCTGCTTTCGGCGCTGCA+GGG | 0.484566 | 8_3:+67318456 | Msa1304000:CDS |
| AGTTTGTGTGGCTGTTTGTC+CGG | 0.493303 | 8_3:-67318065 | None:intergenic |
| ACAAAGTGTGCTGGTGAAAG+AGG | 0.497833 | 8_3:+67317420 | Msa1304000:CDS |
| CAGGTTATTTCTTATGGGCG+TGG | 0.501373 | 8_3:+67317826 | Msa1304000:intron |
| AACCTCAAGGGCCAATTACC+GGG | 0.505991 | 8_3:+67318014 | Msa1304000:CDS |
| ACTCCAGCATGTGGGATTGG+AGG | 0.511522 | 8_3:-67318193 | None:intergenic |
| AATCAAAATAATGGATGAAG+TGG | 0.514101 | 8_3:+67317173 | None:intergenic |
| CAGAACTTCAAATTATCCTC+TGG | 0.519752 | 8_3:+67318111 | Msa1304000:CDS |
| AATACCATAAGCCATGTGTC+CGG | 0.520964 | 8_3:-67318492 | None:intergenic |
| CGAGGATGCTGTTGATCGAT+GGG | 0.525087 | 8_3:+67317260 | Msa1304000:CDS |
| CCGAGGATGCTGTTGATCGA+TGG | 0.525902 | 8_3:+67317259 | Msa1304000:CDS |
| GGCGTGGAGAAGTATGGAAA+GGG | 0.531559 | 8_3:+67317842 | Msa1304000:CDS |
| TGGCGAAGCAGCATACATTC+CGG | 0.533982 | 8_3:-67318143 | None:intergenic |
| GCCATGTGTCCGGGAGCAGA+AGG | 0.540860 | 8_3:-67318482 | None:intergenic |
| GTTTCTTGGACAAATATGCC+AGG | 0.542042 | 8_3:+67318521 | Msa1304000:CDS |
| GAAGTTCTGGTACCAACAGA+TGG | 0.547709 | 8_3:-67318097 | None:intergenic |
| CATCGATCAACAGCATCCTC+GGG | 0.548607 | 8_3:-67317258 | None:intergenic |
| GAACTGGTTGTATCCGAAGT+TGG | 0.550235 | 8_3:+67318250 | Msa1304000:CDS |
| CATGCTCAGAAATACTTCAA+AGG | 0.551854 | 8_3:+67317926 | Msa1304000:CDS |
| ATACCATAAGCCATGTGTCC+GGG | 0.552377 | 8_3:-67318491 | None:intergenic |
| AAGAGCTCAACAAAGTGTGC+TGG | 0.556921 | 8_3:+67317411 | Msa1304000:CDS |
| AATCCTCCAATCCCACATGC+TGG | 0.563458 | 8_3:+67318190 | Msa1304000:CDS |
| TATGCTGCTTCGCCATCTGT+TGG | 0.563547 | 8_3:+67318151 | Msa1304000:CDS |
| CAAAACCAGATTCAATGTTG+TGG | 0.566485 | 8_3:-67317359 | None:intergenic |
| GAAGCAGCATACATTCCGGC+AGG | 0.568137 | 8_3:-67318139 | None:intergenic |
| GGCAACCTATATAGGAAGAC+GGG | 0.569147 | 8_3:+67318430 | Msa1304000:intron |
| AAACATATCAGAGAACTTTG+TGG | 0.573163 | 8_3:+67317874 | Msa1304000:CDS |
| AAGTGGGTAGTACAAATGAC+TGG | 0.573571 | 8_3:+67317190 | Msa1304000:CDS |
| AAATTTCTAGTTCCAACAGA+TGG | 0.578638 | 8_3:-67318163 | None:intergenic |
| GTCAGCTATGTCGAACCTCA+AGG | 0.582791 | 8_3:+67318001 | Msa1304000:CDS |
| CTGGACTGGAGTGCCAACTT+CGG | 0.585299 | 8_3:-67318263 | None:intergenic |
| AAAGAATCATAATCTGGCAG+AGG | 0.587497 | 8_3:-67317384 | None:intergenic |
| TTTCTTGGACAAATATGCCA+GGG | 0.593394 | 8_3:+67318522 | Msa1304000:CDS |
| GCAGCATACATTCCGGCAGG+TGG | 0.596107 | 8_3:-67318136 | None:intergenic |
| GATTCTACAGCAAATTCTGC+CGG | 0.596239 | 8_3:+67318046 | Msa1304000:CDS |
| GGAGCGAAAACTCCAGCATG+TGG | 0.596409 | 8_3:-67318202 | None:intergenic |
| GTACCAACAGATGGAGCTTG+AGG | 0.598203 | 8_3:-67318088 | None:intergenic |
| AAATTGCGGCTGATGTGCCC+GGG | 0.599032 | 8_3:+67317286 | Msa1304000:CDS |
| CAACCAGTTCTCCTATAGGT+TGG | 0.599335 | 8_3:-67318237 | None:intergenic |
| TTCCCGGTAATTGGCCCTTG+AGG | 0.600641 | 8_3:-67318016 | None:intergenic |
| GGGCGTGGAGAAGTATGGAA+AGG | 0.603697 | 8_3:+67317841 | Msa1304000:CDS |
| ATAGGTTGGTCCTCTCTAGG+TGG | 0.603836 | 8_3:-67318223 | None:intergenic |
| ATCAAAATAATGGATGAAGT+GGG | 0.606623 | 8_3:+67317174 | None:intergenic |
| AGGCAACCTATATAGGAAGA+CGG | 0.610775 | 8_3:+67318429 | Msa1304000:intron |
| ACTCCTCAAGCTCCATCTGT+TGG | 0.611272 | 8_3:+67318085 | Msa1304000:CDS |
| ATTCCGGCAGGTGGAGCCAG+AGG | 0.615826 | 8_3:-67318127 | None:intergenic |
| ATTGGACAGAAGACGAACAC+AGG | 0.628543 | 8_3:+67317481 | Msa1304000:CDS |
| TCAGCTATGTCGAACCTCAA+GGG | 0.639508 | 8_3:+67318002 | Msa1304000:CDS |
| TGGAGCTTGAGGAGTTTGTG+TGG | 0.647801 | 8_3:-67318077 | None:intergenic |
| CCAGGGGTACCAATGAACTT+GGG | 0.650736 | 8_3:+67318539 | Msa1304000:CDS |
| TGCATTGGCCAATCATCCCG+AGG | 0.663855 | 8_3:+67317242 | Msa1304000:CDS |
| TTCTTGGACAAATATGCCAG+GGG | 0.665492 | 8_3:+67318523 | Msa1304000:CDS |
| GAGCGAAAACTCCAGCATGT+GGG | 0.667771 | 8_3:-67318201 | None:intergenic |
| TGATCGATGGGAGAAAATTG+CGG | 0.690864 | 8_3:+67317272 | Msa1304000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGATAAGATACTAATTA+AGG | + | chr8_3:67317589-67317608 | Msa1304000:intron | 15.0% |
| !! | TAATGATAAGATACTAATTA+AGG | + | chr8_3:67317589-67317608 | Msa1304000:intron | 15.0% |
| !! | TAAATTGTTTGAAAATGCAT+TGG | + | chr8_3:67317227-67317246 | Msa1304000:CDS | 20.0% |
| !! | TTTGAAAAAGAATCATAATC+TGG | - | chr8_3:67317393-67317412 | None:intergenic | 20.0% |
| !! | GTTATTATTTACAACTTACA+TGG | + | chr8_3:67317551-67317570 | Msa1304000:intron | 20.0% |
| !! | TAAATTGTTTGAAAATGCAT+TGG | + | chr8_3:67317227-67317246 | Msa1304000:CDS | 20.0% |
| !! | TTTGAAAAAGAATCATAATC+TGG | - | chr8_3:67317393-67317412 | None:intergenic | 20.0% |
| !! | GTTATTATTTACAACTTACA+TGG | + | chr8_3:67317551-67317570 | Msa1304000:intron | 20.0% |
| !! | TAAACATCACTATGAGATTT+TGG | + | chr8_3:67317326-67317345 | Msa1304000:CDS | 25.0% |
| ! | GTTTCTTGAATTACTTTCAA+TGG | + | chr8_3:67317717-67317736 | Msa1304000:intron | 25.0% |
| !!! | ACTGATTGTTTTTATGTTGA+AGG | - | chr8_3:67317746-67317765 | None:intergenic | 25.0% |
| !! | TATTTTCAAATTTGATGAGC+AGG | + | chr8_3:67317807-67317826 | Msa1304000:intron | 25.0% |
| !! | TAAACATCACTATGAGATTT+TGG | + | chr8_3:67317326-67317345 | Msa1304000:CDS | 25.0% |
| ! | GTTTCTTGAATTACTTTCAA+TGG | + | chr8_3:67317717-67317736 | Msa1304000:intron | 25.0% |
| !!! | ACTGATTGTTTTTATGTTGA+AGG | - | chr8_3:67317746-67317765 | None:intergenic | 25.0% |
| !! | TATTTTCAAATTTGATGAGC+AGG | + | chr8_3:67317807-67317826 | Msa1304000:intron | 25.0% |
| !!! | AATCTCTTCTAAAGTTTTCC+CGG | - | chr8_3:67317307-67317326 | None:intergenic | 30.0% |
| TGTTTATCTTTGCTTTGCTT+TGG | + | chr8_3:67317506-67317525 | Msa1304000:intron | 30.0% | |
| ACTAATTAAGGTGAAGCTTT+AGG | + | chr8_3:67317601-67317620 | Msa1304000:intron | 30.0% | |
| CTAATTAAGGTGAAGCTTTA+GGG | + | chr8_3:67317602-67317621 | Msa1304000:intron | 30.0% | |
| ! | ATTATCACTAGTGCTAGTTT+AGG | + | chr8_3:67317680-67317699 | Msa1304000:intron | 30.0% |
| ! | TTATCACTAGTGCTAGTTTA+GGG | + | chr8_3:67317681-67317700 | Msa1304000:intron | 30.0% |
| !! | ATGAGCAGGTTATTTCTTAT+GGG | + | chr8_3:67317821-67317840 | Msa1304000:intron | 30.0% |
| AAACATATCAGAGAACTTTG+TGG | + | chr8_3:67317874-67317893 | Msa1304000:CDS | 30.0% | |
| TCTTCTTTCTTTCTTCTCTT+TGG | - | chr8_3:67317963-67317982 | None:intergenic | 30.0% | |
| !! | AAATTTCTAGTTCCAACAGA+TGG | - | chr8_3:67318166-67318185 | None:intergenic | 30.0% |
| TCTGTTGGAACTAGAAATTT+AGG | + | chr8_3:67318166-67318185 | Msa1304000:CDS | 30.0% | |
| TGGATGATCATCTAAATTTC+TGG | - | chr8_3:67318367-67318386 | None:intergenic | 30.0% | |
| ! | TGAGCAAATGTATTTTGCAT+GGG | - | chr8_3:67318578-67318597 | None:intergenic | 30.0% |
| !!! | AATCTCTTCTAAAGTTTTCC+CGG | - | chr8_3:67317307-67317326 | None:intergenic | 30.0% |
| TGTTTATCTTTGCTTTGCTT+TGG | + | chr8_3:67317506-67317525 | Msa1304000:intron | 30.0% | |
| ACTAATTAAGGTGAAGCTTT+AGG | + | chr8_3:67317601-67317620 | Msa1304000:intron | 30.0% | |
| CTAATTAAGGTGAAGCTTTA+GGG | + | chr8_3:67317602-67317621 | Msa1304000:intron | 30.0% | |
| ! | ATTATCACTAGTGCTAGTTT+AGG | + | chr8_3:67317680-67317699 | Msa1304000:intron | 30.0% |
| ! | TTATCACTAGTGCTAGTTTA+GGG | + | chr8_3:67317681-67317700 | Msa1304000:intron | 30.0% |
| !! | ATGAGCAGGTTATTTCTTAT+GGG | + | chr8_3:67317821-67317840 | Msa1304000:intron | 30.0% |
| AAACATATCAGAGAACTTTG+TGG | + | chr8_3:67317874-67317893 | Msa1304000:CDS | 30.0% | |
| TCTTCTTTCTTTCTTCTCTT+TGG | - | chr8_3:67317963-67317982 | None:intergenic | 30.0% | |
| !! | AAATTTCTAGTTCCAACAGA+TGG | - | chr8_3:67318166-67318185 | None:intergenic | 30.0% |
| TCTGTTGGAACTAGAAATTT+AGG | + | chr8_3:67318166-67318185 | Msa1304000:CDS | 30.0% | |
| TGGATGATCATCTAAATTTC+TGG | - | chr8_3:67318367-67318386 | None:intergenic | 30.0% | |
| ! | TGAGCAAATGTATTTTGCAT+GGG | - | chr8_3:67318578-67318597 | None:intergenic | 30.0% |
| !!! | ATCTCTTCTAAAGTTTTCCC+GGG | - | chr8_3:67317306-67317325 | None:intergenic | 35.0% |
| GATATCCACAACATTGAATC+TGG | + | chr8_3:67317354-67317373 | Msa1304000:CDS | 35.0% | |
| CAAAACCAGATTCAATGTTG+TGG | - | chr8_3:67317362-67317381 | None:intergenic | 35.0% | |
| AAAGAATCATAATCTGGCAG+AGG | - | chr8_3:67317387-67317406 | None:intergenic | 35.0% | |
| TTCTGTCCAATGATAAGAAC+CGG | - | chr8_3:67317472-67317491 | None:intergenic | 35.0% | |
| ! | TAGTGCTAGTTTAGGGTTTA+GGG | + | chr8_3:67317688-67317707 | Msa1304000:intron | 35.0% |
| !! | GATGAGCAGGTTATTTCTTA+TGG | + | chr8_3:67317820-67317839 | Msa1304000:intron | 35.0% |
| ! | AGAAGTATGGAAAGGGTAAA+TGG | + | chr8_3:67317849-67317868 | Msa1304000:CDS | 35.0% |
| CATGCTCAGAAATACTTCAA+AGG | + | chr8_3:67317926-67317945 | Msa1304000:CDS | 35.0% | |
| ! | CAGAGGATAATTTGAAGTTC+TGG | - | chr8_3:67318113-67318132 | None:intergenic | 35.0% |
| CAGAACTTCAAATTATCCTC+TGG | + | chr8_3:67318111-67318130 | Msa1304000:CDS | 35.0% | |
| !! | TCTAAATTTCTGGTTCCAGA+AGG | - | chr8_3:67318357-67318376 | None:intergenic | 35.0% |
| TTTCTTGGACAAATATGCCA+GGG | + | chr8_3:67318522-67318541 | Msa1304000:CDS | 35.0% | |
| ! | TTTTGCATGGGAAATGTCAT+AGG | - | chr8_3:67318566-67318585 | None:intergenic | 35.0% |
| ! | GTGAGCAAATGTATTTTGCA+TGG | - | chr8_3:67318579-67318598 | None:intergenic | 35.0% |
| !!! | ATCTCTTCTAAAGTTTTCCC+GGG | - | chr8_3:67317306-67317325 | None:intergenic | 35.0% |
| GATATCCACAACATTGAATC+TGG | + | chr8_3:67317354-67317373 | Msa1304000:CDS | 35.0% | |
| CAAAACCAGATTCAATGTTG+TGG | - | chr8_3:67317362-67317381 | None:intergenic | 35.0% | |
| AAAGAATCATAATCTGGCAG+AGG | - | chr8_3:67317387-67317406 | None:intergenic | 35.0% | |
| TTCTGTCCAATGATAAGAAC+CGG | - | chr8_3:67317472-67317491 | None:intergenic | 35.0% | |
| ! | TAGTGCTAGTTTAGGGTTTA+GGG | + | chr8_3:67317688-67317707 | Msa1304000:intron | 35.0% |
| !! | GATGAGCAGGTTATTTCTTA+TGG | + | chr8_3:67317820-67317839 | Msa1304000:intron | 35.0% |
| ! | AGAAGTATGGAAAGGGTAAA+TGG | + | chr8_3:67317849-67317868 | Msa1304000:CDS | 35.0% |
| CATGCTCAGAAATACTTCAA+AGG | + | chr8_3:67317926-67317945 | Msa1304000:CDS | 35.0% | |
| ! | CAGAGGATAATTTGAAGTTC+TGG | - | chr8_3:67318113-67318132 | None:intergenic | 35.0% |
| CAGAACTTCAAATTATCCTC+TGG | + | chr8_3:67318111-67318130 | Msa1304000:CDS | 35.0% | |
| !! | TCTAAATTTCTGGTTCCAGA+AGG | - | chr8_3:67318357-67318376 | None:intergenic | 35.0% |
| TTTCTTGGACAAATATGCCA+GGG | + | chr8_3:67318522-67318541 | Msa1304000:CDS | 35.0% | |
| ! | TTTTGCATGGGAAATGTCAT+AGG | - | chr8_3:67318566-67318585 | None:intergenic | 35.0% |
| ! | GTGAGCAAATGTATTTTGCA+TGG | - | chr8_3:67318579-67318598 | None:intergenic | 35.0% |
| AAGTGGGTAGTACAAATGAC+TGG | + | chr8_3:67317190-67317209 | Msa1304000:CDS | 40.0% | |
| TGATCGATGGGAGAAAATTG+CGG | + | chr8_3:67317272-67317291 | Msa1304000:CDS | 40.0% | |
| TGAAAGAGGAGCTGTGAAAA+AGG | + | chr8_3:67317434-67317453 | Msa1304000:CDS | 40.0% | |
| GAAAGAGGAGCTGTGAAAAA+GGG | + | chr8_3:67317435-67317454 | Msa1304000:CDS | 40.0% | |
| AGCTGTGAAAAAGGGAACTA+GGG | + | chr8_3:67317443-67317462 | Msa1304000:CDS | 40.0% | |
| CATTAGAGTGTGCTCTATCA+AGG | + | chr8_3:67317646-67317665 | Msa1304000:intron | 40.0% | |
| ! | CTAGTGCTAGTTTAGGGTTT+AGG | + | chr8_3:67317687-67317706 | Msa1304000:intron | 40.0% |
| ATAGCTGACATCGTGTATTC+TGG | - | chr8_3:67317990-67318009 | None:intergenic | 40.0% | |
| TGTAGAATCGATTGCTTTCC+CGG | - | chr8_3:67318035-67318054 | None:intergenic | 40.0% | |
| GATTCTACAGCAAATTCTGC+CGG | + | chr8_3:67318046-67318065 | Msa1304000:CDS | 40.0% | |
| GATACAACCAGTTCTCCTAT+AGG | - | chr8_3:67318244-67318263 | None:intergenic | 40.0% | |
| GCAACATACATTTCAGTAGG+TGG | - | chr8_3:67318327-67318346 | None:intergenic | 40.0% | |
| GCTGCAACATACATTTCAGT+AGG | - | chr8_3:67318330-67318349 | None:intergenic | 40.0% | |
| !! | AAATTTCTGGTTCCAGAAGG+CGG | - | chr8_3:67318354-67318373 | None:intergenic | 40.0% |
| TTTATGATGTGCCTTGGATC+AGG | + | chr8_3:67318409-67318428 | Msa1304000:intron | 40.0% | |
| TATATAGGTTGCCTGATCCA+AGG | - | chr8_3:67318423-67318442 | None:intergenic | 40.0% | |
| TTGGATCAGGCAACCTATAT+AGG | + | chr8_3:67318422-67318441 | Msa1304000:intron | 40.0% | |
| AGGCAACCTATATAGGAAGA+CGG | + | chr8_3:67318429-67318448 | Msa1304000:intron | 40.0% | |
| TACAACCCGTCTTCCTATAT+AGG | - | chr8_3:67318438-67318457 | None:intergenic | 40.0% | |
| AATACCATAAGCCATGTGTC+CGG | - | chr8_3:67318495-67318514 | None:intergenic | 40.0% | |
| ! | ATGGTATTGGACCAGTTTCT+TGG | + | chr8_3:67318507-67318526 | Msa1304000:CDS | 40.0% |
| GGCATATTTGTCCAAGAAAC+TGG | - | chr8_3:67318521-67318540 | None:intergenic | 40.0% | |
| GTTTCTTGGACAAATATGCC+AGG | + | chr8_3:67318521-67318540 | Msa1304000:CDS | 40.0% | |
| TTCTTGGACAAATATGCCAG+GGG | + | chr8_3:67318523-67318542 | Msa1304000:CDS | 40.0% | |
| AAGTGGGTAGTACAAATGAC+TGG | + | chr8_3:67317190-67317209 | Msa1304000:CDS | 40.0% | |
| TGATCGATGGGAGAAAATTG+CGG | + | chr8_3:67317272-67317291 | Msa1304000:CDS | 40.0% | |
| TGAAAGAGGAGCTGTGAAAA+AGG | + | chr8_3:67317434-67317453 | Msa1304000:CDS | 40.0% | |
| GAAAGAGGAGCTGTGAAAAA+GGG | + | chr8_3:67317435-67317454 | Msa1304000:CDS | 40.0% | |
| AGCTGTGAAAAAGGGAACTA+GGG | + | chr8_3:67317443-67317462 | Msa1304000:CDS | 40.0% | |
| CATTAGAGTGTGCTCTATCA+AGG | + | chr8_3:67317646-67317665 | Msa1304000:intron | 40.0% | |
| ! | CTAGTGCTAGTTTAGGGTTT+AGG | + | chr8_3:67317687-67317706 | Msa1304000:intron | 40.0% |
| ATAGCTGACATCGTGTATTC+TGG | - | chr8_3:67317990-67318009 | None:intergenic | 40.0% | |
| TGTAGAATCGATTGCTTTCC+CGG | - | chr8_3:67318035-67318054 | None:intergenic | 40.0% | |
| GATTCTACAGCAAATTCTGC+CGG | + | chr8_3:67318046-67318065 | Msa1304000:CDS | 40.0% | |
| GATACAACCAGTTCTCCTAT+AGG | - | chr8_3:67318244-67318263 | None:intergenic | 40.0% | |
| GCAACATACATTTCAGTAGG+TGG | - | chr8_3:67318327-67318346 | None:intergenic | 40.0% | |
| GCTGCAACATACATTTCAGT+AGG | - | chr8_3:67318330-67318349 | None:intergenic | 40.0% | |
| !! | AAATTTCTGGTTCCAGAAGG+CGG | - | chr8_3:67318354-67318373 | None:intergenic | 40.0% |
| TTTATGATGTGCCTTGGATC+AGG | + | chr8_3:67318409-67318428 | Msa1304000:intron | 40.0% | |
| TATATAGGTTGCCTGATCCA+AGG | - | chr8_3:67318423-67318442 | None:intergenic | 40.0% | |
| TTGGATCAGGCAACCTATAT+AGG | + | chr8_3:67318422-67318441 | Msa1304000:intron | 40.0% | |
| AGGCAACCTATATAGGAAGA+CGG | + | chr8_3:67318429-67318448 | Msa1304000:intron | 40.0% | |
| TACAACCCGTCTTCCTATAT+AGG | - | chr8_3:67318438-67318457 | None:intergenic | 40.0% | |
| AATACCATAAGCCATGTGTC+CGG | - | chr8_3:67318495-67318514 | None:intergenic | 40.0% | |
| ! | ATGGTATTGGACCAGTTTCT+TGG | + | chr8_3:67318507-67318526 | Msa1304000:CDS | 40.0% |
| GGCATATTTGTCCAAGAAAC+TGG | - | chr8_3:67318521-67318540 | None:intergenic | 40.0% | |
| GTTTCTTGGACAAATATGCC+AGG | + | chr8_3:67318521-67318540 | Msa1304000:CDS | 40.0% | |
| TTCTTGGACAAATATGCCAG+GGG | + | chr8_3:67318523-67318542 | Msa1304000:CDS | 40.0% | |
| AAGAGCTCAACAAAGTGTGC+TGG | + | chr8_3:67317411-67317430 | Msa1304000:CDS | 45.0% | |
| ! | ACAAAGTGTGCTGGTGAAAG+AGG | + | chr8_3:67317420-67317439 | Msa1304000:CDS | 45.0% |
| GAGCTGTGAAAAAGGGAACT+AGG | + | chr8_3:67317442-67317461 | Msa1304000:CDS | 45.0% | |
| AAAAAGGGAACTAGGGCTTC+CGG | + | chr8_3:67317450-67317469 | Msa1304000:CDS | 45.0% | |
| ATTGGACAGAAGACGAACAC+AGG | + | chr8_3:67317481-67317500 | Msa1304000:CDS | 45.0% | |
| !! | CAGGTTATTTCTTATGGGCG+TGG | + | chr8_3:67317826-67317845 | Msa1304000:intron | 45.0% |
| TCAGCTATGTCGAACCTCAA+GGG | + | chr8_3:67318002-67318021 | Msa1304000:CDS | 45.0% | |
| TCGATTGCTTTCCCGGTAAT+TGG | - | chr8_3:67318028-67318047 | None:intergenic | 45.0% | |
| AGTTTGTGTGGCTGTTTGTC+CGG | - | chr8_3:67318068-67318087 | None:intergenic | 45.0% | |
| ! | GAAGTTCTGGTACCAACAGA+TGG | - | chr8_3:67318100-67318119 | None:intergenic | 45.0% |
| AAAACTCCAGCATGTGGGAT+TGG | - | chr8_3:67318199-67318218 | None:intergenic | 45.0% | |
| CAACCAGTTCTCCTATAGGT+TGG | - | chr8_3:67318240-67318259 | None:intergenic | 45.0% | |
| GAACTGGTTGTATCCGAAGT+TGG | + | chr8_3:67318250-67318269 | Msa1304000:CDS | 45.0% | |
| ! | AGCTTGAGGAGCATAAACTC+CGG | - | chr8_3:67318304-67318323 | None:intergenic | 45.0% |
| ATTTCAGTAGGTGGAGCTTG+AGG | - | chr8_3:67318318-67318337 | None:intergenic | 45.0% | |
| !! | AATTTCTGGTTCCAGAAGGC+GGG | - | chr8_3:67318353-67318372 | None:intergenic | 45.0% |
| TCGGAGTTTATGATGTGCCT+TGG | + | chr8_3:67318403-67318422 | Msa1304000:intron | 45.0% | |
| GGCAACCTATATAGGAAGAC+GGG | + | chr8_3:67318430-67318449 | Msa1304000:intron | 45.0% | |
| !! | AGACGGGTTGTATCTGCTTT+CGG | + | chr8_3:67318446-67318465 | Msa1304000:CDS | 45.0% |
| ATACCATAAGCCATGTGTCC+GGG | - | chr8_3:67318494-67318513 | None:intergenic | 45.0% | |
| GGACACATGGCTTATGGTAT+TGG | + | chr8_3:67318494-67318513 | Msa1304000:CDS | 45.0% | |
| GTCATAGGACCCAAGTTCAT+TGG | - | chr8_3:67318551-67318570 | None:intergenic | 45.0% | |
| AAGAGCTCAACAAAGTGTGC+TGG | + | chr8_3:67317411-67317430 | Msa1304000:CDS | 45.0% | |
| ! | ACAAAGTGTGCTGGTGAAAG+AGG | + | chr8_3:67317420-67317439 | Msa1304000:CDS | 45.0% |
| GAGCTGTGAAAAAGGGAACT+AGG | + | chr8_3:67317442-67317461 | Msa1304000:CDS | 45.0% | |
| AAAAAGGGAACTAGGGCTTC+CGG | + | chr8_3:67317450-67317469 | Msa1304000:CDS | 45.0% | |
| ATTGGACAGAAGACGAACAC+AGG | + | chr8_3:67317481-67317500 | Msa1304000:CDS | 45.0% | |
| !! | CAGGTTATTTCTTATGGGCG+TGG | + | chr8_3:67317826-67317845 | Msa1304000:intron | 45.0% |
| TCAGCTATGTCGAACCTCAA+GGG | + | chr8_3:67318002-67318021 | Msa1304000:CDS | 45.0% | |
| TCGATTGCTTTCCCGGTAAT+TGG | - | chr8_3:67318028-67318047 | None:intergenic | 45.0% | |
| AGTTTGTGTGGCTGTTTGTC+CGG | - | chr8_3:67318068-67318087 | None:intergenic | 45.0% | |
| ! | GAAGTTCTGGTACCAACAGA+TGG | - | chr8_3:67318100-67318119 | None:intergenic | 45.0% |
| AAAACTCCAGCATGTGGGAT+TGG | - | chr8_3:67318199-67318218 | None:intergenic | 45.0% | |
| CAACCAGTTCTCCTATAGGT+TGG | - | chr8_3:67318240-67318259 | None:intergenic | 45.0% | |
| GAACTGGTTGTATCCGAAGT+TGG | + | chr8_3:67318250-67318269 | Msa1304000:CDS | 45.0% | |
| ! | AGCTTGAGGAGCATAAACTC+CGG | - | chr8_3:67318304-67318323 | None:intergenic | 45.0% |
| ATTTCAGTAGGTGGAGCTTG+AGG | - | chr8_3:67318318-67318337 | None:intergenic | 45.0% | |
| !! | AATTTCTGGTTCCAGAAGGC+GGG | - | chr8_3:67318353-67318372 | None:intergenic | 45.0% |
| TCGGAGTTTATGATGTGCCT+TGG | + | chr8_3:67318403-67318422 | Msa1304000:intron | 45.0% | |
| GGCAACCTATATAGGAAGAC+GGG | + | chr8_3:67318430-67318449 | Msa1304000:intron | 45.0% | |
| !! | AGACGGGTTGTATCTGCTTT+CGG | + | chr8_3:67318446-67318465 | Msa1304000:CDS | 45.0% |
| ATACCATAAGCCATGTGTCC+GGG | - | chr8_3:67318494-67318513 | None:intergenic | 45.0% | |
| GGACACATGGCTTATGGTAT+TGG | + | chr8_3:67318494-67318513 | Msa1304000:CDS | 45.0% | |
| GTCATAGGACCCAAGTTCAT+TGG | - | chr8_3:67318551-67318570 | None:intergenic | 45.0% | |
| AACAGCATCCTCGGGATGAT+TGG | - | chr8_3:67317253-67317272 | None:intergenic | 50.0% | |
| CATCGATCAACAGCATCCTC+GGG | - | chr8_3:67317261-67317280 | None:intergenic | 50.0% | |
| CCATCGATCAACAGCATCCT+CGG | - | chr8_3:67317262-67317281 | None:intergenic | 50.0% | |
| CGAGGATGCTGTTGATCGAT+GGG | + | chr8_3:67317260-67317279 | Msa1304000:CDS | 50.0% | |
| AAAATTGCGGCTGATGTGCC+CGG | + | chr8_3:67317285-67317304 | Msa1304000:CDS | 50.0% | |
| GGGCTTCCGGTTCTTATCAT+TGG | + | chr8_3:67317463-67317482 | Msa1304000:CDS | 50.0% | |
| !! | GCTTTAGGGTCTACTAGCGT+TGG | + | chr8_3:67317616-67317635 | Msa1304000:intron | 50.0% |
| CTTATGGGCGTGGAGAAGTA+TGG | + | chr8_3:67317836-67317855 | Msa1304000:CDS | 50.0% | |
| ! | GGCGTGGAGAAGTATGGAAA+GGG | + | chr8_3:67317842-67317861 | Msa1304000:CDS | 50.0% |
| GTCAGCTATGTCGAACCTCA+AGG | + | chr8_3:67318001-67318020 | Msa1304000:CDS | 50.0% | |
| GAACCTCAAGGGCCAATTAC+CGG | + | chr8_3:67318013-67318032 | Msa1304000:CDS | 50.0% | |
| AACCTCAAGGGCCAATTACC+GGG | + | chr8_3:67318014-67318033 | Msa1304000:CDS | 50.0% | |
| TGGAGCTTGAGGAGTTTGTG+TGG | - | chr8_3:67318080-67318099 | None:intergenic | 50.0% | |
| ACTCCTCAAGCTCCATCTGT+TGG | + | chr8_3:67318085-67318104 | Msa1304000:CDS | 50.0% | |
| GTACCAACAGATGGAGCTTG+AGG | - | chr8_3:67318091-67318110 | None:intergenic | 50.0% | |
| TGGCGAAGCAGCATACATTC+CGG | - | chr8_3:67318146-67318165 | None:intergenic | 50.0% | |
| ! | TATGCTGCTTCGCCATCTGT+TGG | + | chr8_3:67318151-67318170 | Msa1304000:CDS | 50.0% |
| AATCCTCCAATCCCACATGC+TGG | + | chr8_3:67318190-67318209 | Msa1304000:CDS | 50.0% | |
| GAGCGAAAACTCCAGCATGT+GGG | - | chr8_3:67318204-67318223 | None:intergenic | 50.0% | |
| ! | AGTTTTCGCTCCACCTAGAG+AGG | + | chr8_3:67318213-67318232 | Msa1304000:CDS | 50.0% |
| !! | ATAGGTTGGTCCTCTCTAGG+TGG | - | chr8_3:67318226-67318245 | None:intergenic | 50.0% |
| !! | CCTATAGGTTGGTCCTCTCT+AGG | - | chr8_3:67318229-67318248 | None:intergenic | 50.0% |
| CCTAGAGAGGACCAACCTAT+AGG | + | chr8_3:67318226-67318245 | Msa1304000:CDS | 50.0% | |
| GGACCAACCTATAGGAGAAC+TGG | + | chr8_3:67318234-67318253 | Msa1304000:CDS | 50.0% | |
| AGCAGTCAGAATTCCTGGAC+TGG | - | chr8_3:67318280-67318299 | None:intergenic | 50.0% | |
| ! | GCTTGAGGAGCATAAACTCC+GGG | - | chr8_3:67318303-67318322 | None:intergenic | 50.0% |
| !! | ATTTCTGGTTCCAGAAGGCG+GGG | - | chr8_3:67318352-67318371 | None:intergenic | 50.0% |
| AAACTCCGAGTCCAGCAAGT+GGG | - | chr8_3:67318392-67318411 | None:intergenic | 50.0% | |
| TAAACTCCGAGTCCAGCAAG+TGG | - | chr8_3:67318393-67318412 | None:intergenic | 50.0% | |
| !! | CCAGGGGTACCAATGAACTT+GGG | + | chr8_3:67318539-67318558 | Msa1304000:CDS | 50.0% |
| AACAGCATCCTCGGGATGAT+TGG | - | chr8_3:67317253-67317272 | None:intergenic | 50.0% | |
| CATCGATCAACAGCATCCTC+GGG | - | chr8_3:67317261-67317280 | None:intergenic | 50.0% | |
| CCATCGATCAACAGCATCCT+CGG | - | chr8_3:67317262-67317281 | None:intergenic | 50.0% | |
| CGAGGATGCTGTTGATCGAT+GGG | + | chr8_3:67317260-67317279 | Msa1304000:CDS | 50.0% | |
| AAAATTGCGGCTGATGTGCC+CGG | + | chr8_3:67317285-67317304 | Msa1304000:CDS | 50.0% | |
| GGGCTTCCGGTTCTTATCAT+TGG | + | chr8_3:67317463-67317482 | Msa1304000:CDS | 50.0% | |
| !! | GCTTTAGGGTCTACTAGCGT+TGG | + | chr8_3:67317616-67317635 | Msa1304000:intron | 50.0% |
| CTTATGGGCGTGGAGAAGTA+TGG | + | chr8_3:67317836-67317855 | Msa1304000:CDS | 50.0% | |
| ! | GGCGTGGAGAAGTATGGAAA+GGG | + | chr8_3:67317842-67317861 | Msa1304000:CDS | 50.0% |
| GTCAGCTATGTCGAACCTCA+AGG | + | chr8_3:67318001-67318020 | Msa1304000:CDS | 50.0% | |
| GAACCTCAAGGGCCAATTAC+CGG | + | chr8_3:67318013-67318032 | Msa1304000:CDS | 50.0% | |
| AACCTCAAGGGCCAATTACC+GGG | + | chr8_3:67318014-67318033 | Msa1304000:CDS | 50.0% | |
| TGGAGCTTGAGGAGTTTGTG+TGG | - | chr8_3:67318080-67318099 | None:intergenic | 50.0% | |
| ACTCCTCAAGCTCCATCTGT+TGG | + | chr8_3:67318085-67318104 | Msa1304000:CDS | 50.0% | |
| GTACCAACAGATGGAGCTTG+AGG | - | chr8_3:67318091-67318110 | None:intergenic | 50.0% | |
| TGGCGAAGCAGCATACATTC+CGG | - | chr8_3:67318146-67318165 | None:intergenic | 50.0% | |
| ! | TATGCTGCTTCGCCATCTGT+TGG | + | chr8_3:67318151-67318170 | Msa1304000:CDS | 50.0% |
| AATCCTCCAATCCCACATGC+TGG | + | chr8_3:67318190-67318209 | Msa1304000:CDS | 50.0% | |
| GAGCGAAAACTCCAGCATGT+GGG | - | chr8_3:67318204-67318223 | None:intergenic | 50.0% | |
| ! | AGTTTTCGCTCCACCTAGAG+AGG | + | chr8_3:67318213-67318232 | Msa1304000:CDS | 50.0% |
| !! | ATAGGTTGGTCCTCTCTAGG+TGG | - | chr8_3:67318226-67318245 | None:intergenic | 50.0% |
| !! | CCTATAGGTTGGTCCTCTCT+AGG | - | chr8_3:67318229-67318248 | None:intergenic | 50.0% |
| CCTAGAGAGGACCAACCTAT+AGG | + | chr8_3:67318226-67318245 | Msa1304000:CDS | 50.0% | |
| GGACCAACCTATAGGAGAAC+TGG | + | chr8_3:67318234-67318253 | Msa1304000:CDS | 50.0% | |
| AGCAGTCAGAATTCCTGGAC+TGG | - | chr8_3:67318280-67318299 | None:intergenic | 50.0% | |
| ! | GCTTGAGGAGCATAAACTCC+GGG | - | chr8_3:67318303-67318322 | None:intergenic | 50.0% |
| !! | ATTTCTGGTTCCAGAAGGCG+GGG | - | chr8_3:67318352-67318371 | None:intergenic | 50.0% |
| AAACTCCGAGTCCAGCAAGT+GGG | - | chr8_3:67318392-67318411 | None:intergenic | 50.0% | |
| TAAACTCCGAGTCCAGCAAG+TGG | - | chr8_3:67318393-67318412 | None:intergenic | 50.0% | |
| !! | CCAGGGGTACCAATGAACTT+GGG | + | chr8_3:67318539-67318558 | Msa1304000:CDS | 50.0% |
| ! | TGCATTGGCCAATCATCCCG+AGG | + | chr8_3:67317242-67317261 | Msa1304000:CDS | 55.0% |
| CCGAGGATGCTGTTGATCGA+TGG | + | chr8_3:67317259-67317278 | Msa1304000:CDS | 55.0% | |
| AAATTGCGGCTGATGTGCCC+GGG | + | chr8_3:67317286-67317305 | Msa1304000:CDS | 55.0% | |
| ! | GGGCGTGGAGAAGTATGGAA+AGG | + | chr8_3:67317841-67317860 | Msa1304000:CDS | 55.0% |
| TTCCCGGTAATTGGCCCTTG+AGG | - | chr8_3:67318019-67318038 | None:intergenic | 55.0% | |
| GAAGCAGCATACATTCCGGC+AGG | - | chr8_3:67318142-67318161 | None:intergenic | 55.0% | |
| ACTCCAGCATGTGGGATTGG+AGG | - | chr8_3:67318196-67318215 | None:intergenic | 55.0% | |
| GGAGCGAAAACTCCAGCATG+TGG | - | chr8_3:67318205-67318224 | None:intergenic | 55.0% | |
| ! | CTGGACTGGAGTGCCAACTT+CGG | - | chr8_3:67318266-67318285 | None:intergenic | 55.0% |
| CCAGGAATTCTGACTGCTCC+CGG | + | chr8_3:67318282-67318301 | Msa1304000:intron | 55.0% | |
| AACTCCGAGTCCAGCAAGTG+GGG | - | chr8_3:67318391-67318410 | None:intergenic | 55.0% | |
| TATCTGCTTTCGGCGCTGCA+GGG | + | chr8_3:67318456-67318475 | Msa1304000:CDS | 55.0% | |
| !! | GCCAGGGGTACCAATGAACT+TGG | + | chr8_3:67318538-67318557 | Msa1304000:CDS | 55.0% |
| CCCAAGTTCATTGGTACCCC+TGG | - | chr8_3:67318542-67318561 | None:intergenic | 55.0% | |
| ! | TGCATTGGCCAATCATCCCG+AGG | + | chr8_3:67317242-67317261 | Msa1304000:CDS | 55.0% |
| CCGAGGATGCTGTTGATCGA+TGG | + | chr8_3:67317259-67317278 | Msa1304000:CDS | 55.0% | |
| AAATTGCGGCTGATGTGCCC+GGG | + | chr8_3:67317286-67317305 | Msa1304000:CDS | 55.0% | |
| ! | GGGCGTGGAGAAGTATGGAA+AGG | + | chr8_3:67317841-67317860 | Msa1304000:CDS | 55.0% |
| TTCCCGGTAATTGGCCCTTG+AGG | - | chr8_3:67318019-67318038 | None:intergenic | 55.0% | |
| GAAGCAGCATACATTCCGGC+AGG | - | chr8_3:67318142-67318161 | None:intergenic | 55.0% | |
| ACTCCAGCATGTGGGATTGG+AGG | - | chr8_3:67318196-67318215 | None:intergenic | 55.0% | |
| GGAGCGAAAACTCCAGCATG+TGG | - | chr8_3:67318205-67318224 | None:intergenic | 55.0% | |
| ! | CTGGACTGGAGTGCCAACTT+CGG | - | chr8_3:67318266-67318285 | None:intergenic | 55.0% |
| CCAGGAATTCTGACTGCTCC+CGG | + | chr8_3:67318282-67318301 | Msa1304000:intron | 55.0% | |
| AACTCCGAGTCCAGCAAGTG+GGG | - | chr8_3:67318391-67318410 | None:intergenic | 55.0% | |
| TATCTGCTTTCGGCGCTGCA+GGG | + | chr8_3:67318456-67318475 | Msa1304000:CDS | 55.0% | |
| !! | GCCAGGGGTACCAATGAACT+TGG | + | chr8_3:67318538-67318557 | Msa1304000:CDS | 55.0% |
| CCCAAGTTCATTGGTACCCC+TGG | - | chr8_3:67318542-67318561 | None:intergenic | 55.0% | |
| ! | TATCCTCTGGCTCCACCTGC+CGG | + | chr8_3:67318124-67318143 | Msa1304000:CDS | 60.0% |
| GCAGCATACATTCCGGCAGG+TGG | - | chr8_3:67318139-67318158 | None:intergenic | 60.0% | |
| CGAAGTTGGCACTCCAGTCC+AGG | + | chr8_3:67318264-67318283 | Msa1304000:intron | 60.0% | |
| CCGGGAGCAGTCAGAATTCC+TGG | - | chr8_3:67318285-67318304 | None:intergenic | 60.0% | |
| TATGTTGCAGCCCCGCCTTC+TGG | + | chr8_3:67318339-67318358 | Msa1304000:intron | 60.0% | |
| GATCATCCAGCCCCACTTGC+TGG | + | chr8_3:67318378-67318397 | Msa1304000:intron | 60.0% | |
| GTATCTGCTTTCGGCGCTGC+AGG | + | chr8_3:67318455-67318474 | Msa1304000:CDS | 60.0% | |
| GCAGGGTTTCCTTCTGCTCC+CGG | + | chr8_3:67318473-67318492 | Msa1304000:CDS | 60.0% | |
| TCCTTCTGCTCCCGGACACA+TGG | + | chr8_3:67318481-67318500 | Msa1304000:CDS | 60.0% | |
| GCTCCCGGACACATGGCTTA+TGG | + | chr8_3:67318488-67318507 | Msa1304000:CDS | 60.0% | |
| ! | TATCCTCTGGCTCCACCTGC+CGG | + | chr8_3:67318124-67318143 | Msa1304000:CDS | 60.0% |
| GCAGCATACATTCCGGCAGG+TGG | - | chr8_3:67318139-67318158 | None:intergenic | 60.0% | |
| CGAAGTTGGCACTCCAGTCC+AGG | + | chr8_3:67318264-67318283 | Msa1304000:intron | 60.0% | |
| CCGGGAGCAGTCAGAATTCC+TGG | - | chr8_3:67318285-67318304 | None:intergenic | 60.0% | |
| TATGTTGCAGCCCCGCCTTC+TGG | + | chr8_3:67318339-67318358 | Msa1304000:intron | 60.0% | |
| GATCATCCAGCCCCACTTGC+TGG | + | chr8_3:67318378-67318397 | Msa1304000:intron | 60.0% | |
| GTATCTGCTTTCGGCGCTGC+AGG | + | chr8_3:67318455-67318474 | Msa1304000:CDS | 60.0% | |
| GCAGGGTTTCCTTCTGCTCC+CGG | + | chr8_3:67318473-67318492 | Msa1304000:CDS | 60.0% | |
| TCCTTCTGCTCCCGGACACA+TGG | + | chr8_3:67318481-67318500 | Msa1304000:CDS | 60.0% | |
| GCTCCCGGACACATGGCTTA+TGG | + | chr8_3:67318488-67318507 | Msa1304000:CDS | 60.0% | |
| ATTCCGGCAGGTGGAGCCAG+AGG | - | chr8_3:67318130-67318149 | None:intergenic | 65.0% | |
| ! | CCAGCCCCACTTGCTGGACT+CGG | + | chr8_3:67318384-67318403 | Msa1304000:intron | 65.0% |
| GCCATGTGTCCGGGAGCAGA+AGG | - | chr8_3:67318485-67318504 | None:intergenic | 65.0% | |
| ATTCCGGCAGGTGGAGCCAG+AGG | - | chr8_3:67318130-67318149 | None:intergenic | 65.0% | |
| ! | CCAGCCCCACTTGCTGGACT+CGG | + | chr8_3:67318384-67318403 | Msa1304000:intron | 65.0% |
| GCCATGTGTCCGGGAGCAGA+AGG | - | chr8_3:67318485-67318504 | None:intergenic | 65.0% | |
| CCGAGTCCAGCAAGTGGGGC+TGG | - | chr8_3:67318387-67318406 | None:intergenic | 70.0% | |
| CCGAGTCCAGCAAGTGGGGC+TGG | - | chr8_3:67318387-67318406 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 67317183 | 67318601 | 67317183 | ID=Msa1304000;Name=Msa1304000 |
| chr8_3 | mRNA | 67317183 | 67318601 | 67317183 | ID=Msa1304000-mRNA-1;Parent=Msa1304000;Name=Msa1304000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|313 |
| chr8_3 | exon | 67317183 | 67317502 | 67317183 | ID=Msa1304000-mRNA-1:exon:20591;Parent=Msa1304000-mRNA-1 |
| chr8_3 | exon | 67317829 | 67318279 | 67317829 | ID=Msa1304000-mRNA-1:exon:20592;Parent=Msa1304000-mRNA-1 |
| chr8_3 | exon | 67318431 | 67318601 | 67318431 | ID=Msa1304000-mRNA-1:exon:20593;Parent=Msa1304000-mRNA-1 |
| chr8_3 | CDS | 67317183 | 67317502 | 67317183 | ID=Msa1304000-mRNA-1:cds;Parent=Msa1304000-mRNA-1 |
| chr8_3 | CDS | 67317829 | 67318279 | 67317829 | ID=Msa1304000-mRNA-1:cds;Parent=Msa1304000-mRNA-1 |
| chr8_3 | CDS | 67318431 | 67318601 | 67318431 | ID=Msa1304000-mRNA-1:cds;Parent=Msa1304000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
