Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307480 | XP_003616150.2 | 90.265 | 339 | 26 | 2 | 1 | 332 | 1 | 339 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307480 | sp|Q6NQJ8|SDG40_ARATH | 60.778 | 334 | 116 | 5 | 1 | 328 | 1 | 325 | 6.58e-142 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307480 | G7KFS1 | 90.265 | 339 | 26 | 2 | 1 | 332 | 1 | 339 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1307480 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307480 | MtrunA17_Chr5g0433621 | 90.265 | 339 | 26 | 2 | 1 | 332 | 1 | 339 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307480 | AT5G17240.1 | 60.778 | 334 | 116 | 5 | 1 | 328 | 1 | 325 | 6.69e-143 | 415 |
| Msa1307480 | AT5G17240.2 | 62.548 | 259 | 86 | 4 | 76 | 328 | 1 | 254 | 1.43e-112 | 335 |
Find 81 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGTCATTAAAGCAGATTT+TGG | 0.219025 | 8_4:-3078784 | None:intergenic |
| CTCTTCTCTCTCCTCTGTTC+AGG | 0.231576 | 8_4:+3078858 | Msa1307480:CDS |
| CAACACTCTCTTTCCTCTCT+TGG | 0.235733 | 8_4:+3078495 | Msa1307480:CDS |
| AACATTTAAGGCATGGCTTT+GGG | 0.315162 | 8_4:+3080895 | Msa1307480:CDS |
| CACTTCTACTTCATGGTCTA+AGG | 0.325752 | 8_4:+3082236 | Msa1307480:CDS |
| CTATGTACACTTCTACTTCA+TGG | 0.363522 | 8_4:+3082229 | Msa1307480:CDS |
| TAACATTTAAGGCATGGCTT+TGG | 0.385694 | 8_4:+3080894 | Msa1307480:CDS |
| GAAAGAAGCTCATGCCTTGA+TGG | 0.398662 | 8_4:+3080844 | Msa1307480:CDS |
| AGTCATAACTTTGCGGCAAA+TGG | 0.404610 | 8_4:-3080596 | None:intergenic |
| TCTCCAGGTGCATTACCAAC+AGG | 0.422977 | 8_4:-3081635 | None:intergenic |
| GCACCTGGAGAGGACCTATC+TGG | 0.428392 | 8_4:+3081647 | Msa1307480:CDS |
| AGAATGTTGCAGTAGAGGTT+TGG | 0.444175 | 8_4:+3078717 | Msa1307480:intron |
| CAATCAAATGGAGACAAGAA+TGG | 0.446355 | 8_4:+3081692 | Msa1307480:CDS |
| GAATGTTGCAGTAGAGGTTT+GGG | 0.448690 | 8_4:+3078718 | Msa1307480:intron |
| CTTGTTATACGAAGTTGGTA+AGG | 0.457725 | 8_4:+3080542 | Msa1307480:CDS |
| GTTTGCTTGTTATACGAAGT+TGG | 0.462021 | 8_4:+3080537 | Msa1307480:CDS |
| AGGAAAGAGAGTGTTGAGAA+TGG | 0.462418 | 8_4:-3078488 | None:intergenic |
| GAATGGTCGGTGTTTGTTGT+TGG | 0.462791 | 8_4:-3078471 | None:intergenic |
| TATGACTTGCTAGCCATGTT+TGG | 0.465171 | 8_4:+3080612 | Msa1307480:CDS |
| ATGGCTTTGGGCTGCTGCAA+CGG | 0.467154 | 8_4:+3080907 | Msa1307480:CDS |
| CTACCTTTCCTCACTCTGGC+GGG | 0.467292 | 8_4:+3078535 | Msa1307480:CDS |
| GTGCTGTGAGAGATCTTAAG+AGG | 0.468743 | 8_4:+3078740 | Msa1307480:CDS |
| CACCAGGTTCTATTATGCTA+TGG | 0.472726 | 8_4:+3082117 | Msa1307480:intron |
| TGCGGCAAATGGACGAGGTA+AGG | 0.498856 | 8_4:-3080585 | None:intergenic |
| GCTAGGACAAATTACAAGAA+AGG | 0.501930 | 8_4:+3081803 | Msa1307480:CDS |
| AAATTACAAGAAAGGCGATC+AGG | 0.502432 | 8_4:+3081811 | Msa1307480:CDS |
| AAACATCAGTTCTTCCATCA+AGG | 0.504879 | 8_4:-3080858 | None:intergenic |
| AATAATCGAATAATTAAGAC+GGG | 0.509433 | 8_4:-3082333 | None:intergenic |
| AGCTATGTCTTGCTGTGAAT+AGG | 0.511400 | 8_4:+3078833 | Msa1307480:CDS |
| TTGGTAAGGGAAAGACTTCA+AGG | 0.512774 | 8_4:+3080556 | Msa1307480:CDS |
| GTTTCTACCTTTCCTCACTC+TGG | 0.514945 | 8_4:+3078531 | Msa1307480:CDS |
| TGCCCTGTTGGTAATGCACC+TGG | 0.524360 | 8_4:+3081632 | Msa1307480:CDS |
| AAGAGAGTGTTGAGAATGGT+CGG | 0.528406 | 8_4:-3078484 | None:intergenic |
| GTACGAGTTCTGAAAGAGCT+AGG | 0.531868 | 8_4:+3078372 | Msa1307480:five_prime_UTR |
| TATGATTCATGAAGTTGAGT+GGG | 0.534638 | 8_4:+3082414 | Msa1307480:exon |
| GAAAGAGCTAGGTTAGAAGA+TGG | 0.535954 | 8_4:+3078383 | Msa1307480:exon |
| AACTTTGCGGCAAATGGACG+AGG | 0.537904 | 8_4:-3080590 | None:intergenic |
| GCTAGCAAGTCATAACTTTG+CGG | 0.538816 | 8_4:-3080603 | None:intergenic |
| AAGAACATGGAAGGTTTGAA+AGG | 0.542145 | 8_4:+3078409 | Msa1307480:CDS |
| TACTAGCTGCGTTACGACTG+TGG | 0.542432 | 8_4:+3082299 | Msa1307480:CDS |
| TTTCTCAAATTCACCAAACA+TGG | 0.542605 | 8_4:-3080625 | None:intergenic |
| GAAGTAGAAGTGTACATAGC+AGG | 0.549201 | 8_4:-3082225 | None:intergenic |
| GCTGGTTGTTTATGCCCTGT+TGG | 0.550535 | 8_4:+3081620 | Msa1307480:CDS |
| AAGAACTGATGTTTAAGCCT+CGG | 0.551132 | 8_4:+3080867 | Msa1307480:CDS |
| AAATAATCGAATAATTAAGA+CGG | 0.552538 | 8_4:-3082334 | None:intergenic |
| CTCAGAGACTAACTGATGGT+GGG | 0.556902 | 8_4:+3081747 | Msa1307480:CDS |
| ATACCAGATAGGTCCTCTCC+AGG | 0.561435 | 8_4:-3081650 | None:intergenic |
| ATCAGGTGGATGAAGCTATG+TGG | 0.568564 | 8_4:+3080783 | Msa1307480:intron |
| TTTGAGCTTCTTGAACACTA+CGG | 0.569876 | 8_4:+3082153 | Msa1307480:CDS |
| GTGTACATAGCAGGTTCCAA+AGG | 0.569923 | 8_4:-3082216 | None:intergenic |
| TCTACCTTTCCTCACTCTGG+CGG | 0.572108 | 8_4:+3078534 | Msa1307480:CDS |
| CTCGGACATTGCATATACCA+TGG | 0.573706 | 8_4:+3081591 | Msa1307480:CDS |
| CTACGTCGTCAATACCAGAT+AGG | 0.574667 | 8_4:-3081661 | None:intergenic |
| TTGTTATACGAAGTTGGTAA+GGG | 0.583923 | 8_4:+3080543 | Msa1307480:CDS |
| TCAGGTGGATGAAGCTATGT+GGG | 0.588137 | 8_4:+3080784 | Msa1307480:intron |
| TCGGACATTGCATATACCAT+GGG | 0.588653 | 8_4:+3081592 | Msa1307480:CDS |
| GGTTTGAAAGGTTCTTAACA+TGG | 0.589973 | 8_4:+3078421 | Msa1307480:CDS |
| TCTCAGAGACTAACTGATGG+TGG | 0.592968 | 8_4:+3081746 | Msa1307480:CDS |
| GCCAGTTACCCGCCAGAGTG+AGG | 0.593667 | 8_4:-3078543 | None:intergenic |
| TAGAAGATGGAACAAGAACA+TGG | 0.594815 | 8_4:+3078396 | Msa1307480:exon |
| TGCTGTGAGAGATCTTAAGA+GGG | 0.596123 | 8_4:+3078741 | Msa1307480:CDS |
| TGTACATAGCAGGTTCCAAA+GGG | 0.596868 | 8_4:-3082215 | None:intergenic |
| TAACAGAGACTGAACTTGCA+GGG | 0.598802 | 8_4:-3080652 | None:intergenic |
| CTCCAGGTGCATTACCAACA+GGG | 0.599210 | 8_4:-3081634 | None:intergenic |
| TGATTTATAACTGCATAATG+TGG | 0.599380 | 8_4:+3082442 | Msa1307480:three_prime_UTR |
| CATTCTCAGAGACTAACTGA+TGG | 0.601638 | 8_4:+3081743 | Msa1307480:CDS |
| TTATGATTCATGAAGTTGAG+TGG | 0.601677 | 8_4:+3082413 | Msa1307480:exon |
| CATATACCATGGGATGAAGC+TGG | 0.602506 | 8_4:+3081602 | Msa1307480:CDS |
| AGATGGAACAAGAACATGGA+AGG | 0.604086 | 8_4:+3078400 | Msa1307480:exon |
| TGTTGGTAATGCACCTGGAG+AGG | 0.606959 | 8_4:+3081637 | Msa1307480:CDS |
| AAATGGAGACAAGAATGGAA+TGG | 0.608545 | 8_4:+3081697 | Msa1307480:CDS |
| GCAGAGAGAATGACCAAGAG+AGG | 0.631070 | 8_4:-3078508 | None:intergenic |
| AAACAACCAGCTTCATCCCA+TGG | 0.633574 | 8_4:-3081608 | None:intergenic |
| TTGGTGAATCTGATATTCCA+AGG | 0.633842 | 8_4:-3078452 | None:intergenic |
| ACTAGCTGCGTTACGACTGT+GGG | 0.639311 | 8_4:+3082300 | Msa1307480:CDS |
| TTAACATGGACATCACACCT+TGG | 0.645130 | 8_4:+3078435 | Msa1307480:CDS |
| TTACCCGCCAGAGTGAGGAA+AGG | 0.662573 | 8_4:-3078538 | None:intergenic |
| GCAGCTAGTAGCGCAAACGA+AGG | 0.670133 | 8_4:-3082286 | None:intergenic |
| AATCACTCTATCCATCCCAA+CGG | 0.685864 | 8_4:+3082259 | Msa1307480:CDS |
| GCTGTGAGAGATCTTAAGAG+GGG | 0.713261 | 8_4:+3078742 | Msa1307480:CDS |
| GTAAGGGAAAGACTTCAAGG+TGG | 0.809146 | 8_4:+3080559 | Msa1307480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATACAAAAAACTAT+TGG | - | chr8_4:3079224-3079243 | None:intergenic | 10.0% |
| !! | AATAATTCTAACAAAAAAAT+TGG | - | chr8_4:3080380-3080399 | None:intergenic | 10.0% |
| !! | TTTATGATAAAATTTATTCA+GGG | - | chr8_4:3081907-3081926 | None:intergenic | 10.0% |
| !! | ATTTATGATAAAATTTATTC+AGG | - | chr8_4:3081908-3081927 | None:intergenic | 10.0% |
| !! | ATTTAATTCTTGAAATTGTA+AGG | + | chr8_4:3079236-3079255 | Msa1307480:intron | 15.0% |
| !!! | ATTTTTTAGTTTATCTCATT+AGG | + | chr8_4:3080677-3080696 | Msa1307480:intron | 15.0% |
| !! | AAACCAAAACAAAAATAAAA+GGG | - | chr8_4:3080948-3080967 | None:intergenic | 15.0% |
| !! | TAAACCAAAACAAAAATAAA+AGG | - | chr8_4:3080949-3080968 | None:intergenic | 15.0% |
| !! | CGAATTAGAAAATATTTATA+CGG | - | chr8_4:3082018-3082037 | None:intergenic | 15.0% |
| !! | AAATAATCGAATAATTAAGA+CGG | - | chr8_4:3082337-3082356 | None:intergenic | 15.0% |
| !! | TGATGTATGATTTCAATTTA+GGG | + | chr8_4:3079386-3079405 | Msa1307480:intron | 20.0% |
| !!! | TAAGTTATTTCTATAGCAAA+AGG | - | chr8_4:3080230-3080249 | None:intergenic | 20.0% |
| !!! | TAATTTTAATTACCTTCCAT+TGG | + | chr8_4:3080341-3080360 | Msa1307480:intron | 20.0% |
| !! | TTCTAACAAAAAAATTGGAT+TGG | - | chr8_4:3080375-3080394 | None:intergenic | 20.0% |
| !! | AGCATAAAGTAAAAAACTAA+CGG | - | chr8_4:3080482-3080501 | None:intergenic | 20.0% |
| !!! | TATCCTCTATTTTATGTTAT+CGG | + | chr8_4:3081285-3081304 | Msa1307480:intron | 20.0% |
| !!! | GTAGATAATTTTCAATCAAA+TGG | + | chr8_4:3081680-3081699 | Msa1307480:CDS | 20.0% |
| !!! | GAAATTTTAACATAACCATT+AGG | + | chr8_4:3081850-3081869 | Msa1307480:intron | 20.0% |
| !! | AATTGAATATGTAAACCTAA+TGG | - | chr8_4:3081868-3081887 | None:intergenic | 20.0% |
| !! | AATAATCGAATAATTAAGAC+GGG | - | chr8_4:3082336-3082355 | None:intergenic | 20.0% |
| !!! | AAACTTTGCATTTGTTTTCT+TGG | + | chr8_4:3078606-3078625 | Msa1307480:intron | 25.0% |
| !!! | AACTTTGCATTTGTTTTCTT+GGG | + | chr8_4:3078607-3078626 | Msa1307480:intron | 25.0% |
| ! | CCAAAACAATACAACAAAAA+TGG | - | chr8_4:3078697-3078716 | None:intergenic | 25.0% |
| !!! | CCATTTTTGTTGTATTGTTT+TGG | + | chr8_4:3078694-3078713 | Msa1307480:intron | 25.0% |
| !!! | TGTTCTGTTCATGTTTTTTT+AGG | + | chr8_4:3078914-3078933 | Msa1307480:intron | 25.0% |
| ! | AATTTGATCCATGAAATAGT+AGG | + | chr8_4:3078972-3078991 | Msa1307480:intron | 25.0% |
| ! | TTGTAATTTCATTAACAGCA+GGG | - | chr8_4:3079277-3079296 | None:intergenic | 25.0% |
| ! | TTTGTAATTTCATTAACAGC+AGG | - | chr8_4:3079278-3079297 | None:intergenic | 25.0% |
| ! | ACTAAATTAACCGATCTAAA+GGG | - | chr8_4:3079338-3079357 | None:intergenic | 25.0% |
| ! | ATTGAAATCATACATCACAT+TGG | - | chr8_4:3079383-3079402 | None:intergenic | 25.0% |
| ! | GTGATGTATGATTTCAATTT+AGG | + | chr8_4:3079385-3079404 | Msa1307480:intron | 25.0% |
| !! | TTTAAGTCTTAGAGTATTCT+TGG | - | chr8_4:3079469-3079488 | None:intergenic | 25.0% |
| ! | AACAAATTGAGGACTATAAA+AGG | - | chr8_4:3079549-3079568 | None:intergenic | 25.0% |
| ! | GGAAGGTAATTAAAATTAAG+AGG | - | chr8_4:3080339-3080358 | None:intergenic | 25.0% |
| ! | TGTTAGAATTATTGTATGCA+TGG | + | chr8_4:3080387-3080406 | Msa1307480:intron | 25.0% |
| ! | ATCTGCAATATAAAAAAGCT+CGG | - | chr8_4:3080510-3080529 | None:intergenic | 25.0% |
| ! | CATTAGGTTAGATTATATCT+TGG | + | chr8_4:3080693-3080712 | Msa1307480:intron | 25.0% |
| ! | AATAACTCATCTTTATGTTG+TGG | + | chr8_4:3080758-3080777 | Msa1307480:intron | 25.0% |
| ! | TACAAAAAGCTAAATCAGAA+TGG | + | chr8_4:3080822-3080841 | Msa1307480:CDS | 25.0% |
| ! | CTACATTATAATGTTGTCAA+CGG | - | chr8_4:3081158-3081177 | None:intergenic | 25.0% |
| ! | AATGTTGTAACAGACTTATT+GGG | + | chr8_4:3081379-3081398 | Msa1307480:intron | 25.0% |
| !!! | ATTGATTCATTTTGTGTTCT+TGG | + | chr8_4:3081472-3081491 | Msa1307480:intron | 25.0% |
| ! | TTTACTCATGACAAGTAAAA+TGG | - | chr8_4:3081509-3081528 | None:intergenic | 25.0% |
| ! | TGATTTATAACTGCATAATG+TGG | + | chr8_4:3082442-3082461 | Msa1307480:three_prime_UTR | 25.0% |
| TTTCTTGGGTGATTAATCAA+AGG | + | chr8_4:3078621-3078640 | Msa1307480:intron | 30.0% | |
| TTCTTGGGTGATTAATCAAA+GGG | + | chr8_4:3078622-3078641 | Msa1307480:intron | 30.0% | |
| ! | CTAGTCATTAAAGCAGATTT+TGG | - | chr8_4:3078787-3078806 | None:intergenic | 30.0% |
| ACATGAACAGAACAAAAACT+TGG | - | chr8_4:3078908-3078927 | None:intergenic | 30.0% | |
| GATACATTCCTACTATTTCA+TGG | - | chr8_4:3078983-3079002 | None:intergenic | 30.0% | |
| CGACATTGCAAAATGTTAAT+CGG | + | chr8_4:3079043-3079062 | Msa1307480:intron | 30.0% | |
| GACTAAATTAACCGATCTAA+AGG | - | chr8_4:3079339-3079358 | None:intergenic | 30.0% | |
| AACTTAACATGCTTGACATT+TGG | - | chr8_4:3079938-3079957 | None:intergenic | 30.0% | |
| TTTATGAACTGGACTGATAT+GGG | - | chr8_4:3079988-3080007 | None:intergenic | 30.0% | |
| ATAAGTGCTCATCATGATAA+GGG | + | chr8_4:3080253-3080272 | Msa1307480:intron | 30.0% | |
| !! | TTGTTATACGAAGTTGGTAA+GGG | + | chr8_4:3080543-3080562 | Msa1307480:CDS | 30.0% |
| TTTCTCAAATTCACCAAACA+TGG | - | chr8_4:3080628-3080647 | None:intergenic | 30.0% | |
| ATCTTTATGTTGTGGTTATC+AGG | + | chr8_4:3080766-3080785 | Msa1307480:intron | 30.0% | |
| !! | GGTTTTTAACATTTAAGGCA+TGG | + | chr8_4:3080888-3080907 | Msa1307480:CDS | 30.0% |
| CCAAAACAAAAATAAAAGGG+AGG | - | chr8_4:3080945-3080964 | None:intergenic | 30.0% | |
| !!! | CCTCCCTTTTATTTTTGTTT+TGG | + | chr8_4:3080942-3080961 | Msa1307480:intron | 30.0% |
| GTAGCGAAATTTGAACAAAT+CGG | + | chr8_4:3081174-3081193 | Msa1307480:intron | 30.0% | |
| CAAGCAAAAGATTTCAAGAA+TGG | - | chr8_4:3081340-3081359 | None:intergenic | 30.0% | |
| CAATGTTGTAACAGACTTAT+TGG | + | chr8_4:3081378-3081397 | Msa1307480:intron | 30.0% | |
| ATGTTGTAACAGACTTATTG+GGG | + | chr8_4:3081380-3081399 | Msa1307480:intron | 30.0% | |
| TCAAAAACCAGATATCTTCT+CGG | + | chr8_4:3081573-3081592 | Msa1307480:intron | 30.0% | |
| !! | ATGCATATTGCTTTTATGCT+AGG | + | chr8_4:3081786-3081805 | Msa1307480:CDS | 30.0% |
| TGTAGACTACAAACTATTAC+AGG | + | chr8_4:3081975-3081994 | Msa1307480:intron | 30.0% | |
| GTAGACTACAAACTATTACA+GGG | + | chr8_4:3081976-3081995 | Msa1307480:intron | 30.0% | |
| ! | GGGATGAAAATTTTGTCATT+TGG | - | chr8_4:3082198-3082217 | None:intergenic | 30.0% |
| ! | TGACAAAATTTTCATCCCTT+TGG | + | chr8_4:3082200-3082219 | Msa1307480:CDS | 30.0% |
| TTATGATTCATGAAGTTGAG+TGG | + | chr8_4:3082413-3082432 | Msa1307480:exon | 30.0% | |
| TATGATTCATGAAGTTGAGT+GGG | + | chr8_4:3082414-3082433 | Msa1307480:exon | 30.0% | |
| !! | TAATGTGGAGTATTTTGTTG+TGG | + | chr8_4:3082457-3082476 | Msa1307480:three_prime_UTR | 30.0% |
| TAGAAGATGGAACAAGAACA+TGG | + | chr8_4:3078396-3078415 | Msa1307480:exon | 35.0% | |
| AAGAACATGGAAGGTTTGAA+AGG | + | chr8_4:3078409-3078428 | Msa1307480:CDS | 35.0% | |
| GGTTTGAAAGGTTCTTAACA+TGG | + | chr8_4:3078421-3078440 | Msa1307480:CDS | 35.0% | |
| TTGGTGAATCTGATATTCCA+AGG | - | chr8_4:3078455-3078474 | None:intergenic | 35.0% | |
| AAGAAGAAAAACCTGAACAG+AGG | - | chr8_4:3078872-3078891 | None:intergenic | 35.0% | |
| ACCTAATTAACAGGTGCTAA+TGG | + | chr8_4:3079192-3079211 | Msa1307480:intron | 35.0% | |
| TCCATTAGCACCTGTTAATT+AGG | - | chr8_4:3079196-3079215 | None:intergenic | 35.0% | |
| !! | TCCTCAATTTGTTGACTTGA+TGG | + | chr8_4:3079556-3079575 | Msa1307480:intron | 35.0% |
| !! | CCTCAATTTGTTGACTTGAT+GGG | + | chr8_4:3079557-3079576 | Msa1307480:intron | 35.0% |
| TTAACATGCTTGACATTTGG+TGG | - | chr8_4:3079935-3079954 | None:intergenic | 35.0% | |
| GTTTATGAACTGGACTGATA+TGG | - | chr8_4:3079989-3080008 | None:intergenic | 35.0% | |
| ! | AGGCAATTTGGTTTATGAAC+TGG | - | chr8_4:3079999-3080018 | None:intergenic | 35.0% |
| TGTGCAATGTTAGAGACTAA+TGG | + | chr8_4:3080023-3080042 | Msa1307480:intron | 35.0% | |
| TTAGAGACTAATGGTCTGTT+TGG | + | chr8_4:3080032-3080051 | Msa1307480:intron | 35.0% | |
| ! | ATAAGTGTTGTGAGACTGTT+TGG | + | chr8_4:3080083-3080102 | Msa1307480:intron | 35.0% |
| ! | TAAGTGTTGTGAGACTGTTT+GGG | + | chr8_4:3080084-3080103 | Msa1307480:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr8_4:3080174-3080193 | None:intergenic | 35.0% |
| CATAAGTGCTCATCATGATA+AGG | + | chr8_4:3080252-3080271 | Msa1307480:intron | 35.0% | |
| AATAAGTTGTGTGTCCAAAC+AGG | + | chr8_4:3080294-3080313 | Msa1307480:intron | 35.0% | |
| TTGGTTCAATAACCAATGGA+AGG | - | chr8_4:3080356-3080375 | None:intergenic | 35.0% | |
| !! | TGGATTGGTTCAATAACCAA+TGG | - | chr8_4:3080360-3080379 | None:intergenic | 35.0% |
| TGATGAAACCAAATCCTAAC+AGG | - | chr8_4:3080435-3080454 | None:intergenic | 35.0% | |
| !! | GTTTGCTTGTTATACGAAGT+TGG | + | chr8_4:3080537-3080556 | Msa1307480:CDS | 35.0% |
| !! | CTTGTTATACGAAGTTGGTA+AGG | + | chr8_4:3080542-3080561 | Msa1307480:CDS | 35.0% |
| TTTATGTTGTGGTTATCAGG+TGG | + | chr8_4:3080769-3080788 | Msa1307480:intron | 35.0% | |
| AAACATCAGTTCTTCCATCA+AGG | - | chr8_4:3080861-3080880 | None:intergenic | 35.0% | |
| AAGAACTGATGTTTAAGCCT+CGG | + | chr8_4:3080867-3080886 | Msa1307480:CDS | 35.0% | |
| ! | GCCTCGGTTTTTAACATTTA+AGG | + | chr8_4:3080883-3080902 | Msa1307480:CDS | 35.0% |
| GCCTTAAATGTTAAAAACCG+AGG | - | chr8_4:3080887-3080906 | None:intergenic | 35.0% | |
| ! | TAACATTTAAGGCATGGCTT+TGG | + | chr8_4:3080894-3080913 | Msa1307480:CDS | 35.0% |
| ! | AACATTTAAGGCATGGCTTT+GGG | + | chr8_4:3080895-3080914 | Msa1307480:CDS | 35.0% |
| ! | TGCAATGACGTTTTATATGG+TGG | + | chr8_4:3081117-3081136 | Msa1307480:intron | 35.0% |
| CATTATAATGTTGTCAACGG+CGG | - | chr8_4:3081155-3081174 | None:intergenic | 35.0% | |
| !! | TATGAAGCGTCGTCAAATAA+CGG | + | chr8_4:3081222-3081241 | Msa1307480:intron | 35.0% |
| TCGCCGATAACATAAAATAG+AGG | - | chr8_4:3081291-3081310 | None:intergenic | 35.0% | |
| ! | AAATCTTTTGCTTGCCTTTC+TGG | + | chr8_4:3081346-3081365 | Msa1307480:intron | 35.0% |
| CAATCAAATGGAGACAAGAA+TGG | + | chr8_4:3081692-3081711 | Msa1307480:CDS | 35.0% | |
| AAATGGAGACAAGAATGGAA+TGG | + | chr8_4:3081697-3081716 | Msa1307480:CDS | 35.0% | |
| GCTAGGACAAATTACAAGAA+AGG | + | chr8_4:3081803-3081822 | Msa1307480:CDS | 35.0% | |
| AAATTACAAGAAAGGCGATC+AGG | + | chr8_4:3081811-3081830 | Msa1307480:CDS | 35.0% | |
| ATCTTCATTCCACTGTTTAG+TGG | + | chr8_4:3082067-3082086 | Msa1307480:intron | 35.0% | |
| ! | ATTCCACTGTTTAGTGGATA+AGG | + | chr8_4:3082073-3082092 | Msa1307480:intron | 35.0% |
| AATAGAACCTGGTGAAAACA+AGG | - | chr8_4:3082111-3082130 | None:intergenic | 35.0% | |
| TTCCATAGCATAATAGAACC+TGG | - | chr8_4:3082122-3082141 | None:intergenic | 35.0% | |
| TTTGAGCTTCTTGAACACTA+CGG | + | chr8_4:3082153-3082172 | Msa1307480:CDS | 35.0% | |
| CTATGTACACTTCTACTTCA+TGG | + | chr8_4:3082229-3082248 | Msa1307480:CDS | 35.0% | |
| GAAAGAGCTAGGTTAGAAGA+TGG | + | chr8_4:3078383-3078402 | Msa1307480:exon | 40.0% | |
| AGATGGAACAAGAACATGGA+AGG | + | chr8_4:3078400-3078419 | Msa1307480:exon | 40.0% | |
| TTAACATGGACATCACACCT+TGG | + | chr8_4:3078435-3078454 | Msa1307480:CDS | 40.0% | |
| !! | AAGAGAGTGTTGAGAATGGT+CGG | - | chr8_4:3078487-3078506 | None:intergenic | 40.0% |
| !! | AGGAAAGAGAGTGTTGAGAA+TGG | - | chr8_4:3078491-3078510 | None:intergenic | 40.0% |
| TTTGGAGAATGTTGCAGTAG+AGG | + | chr8_4:3078712-3078731 | Msa1307480:intron | 40.0% | |
| AGAATGTTGCAGTAGAGGTT+TGG | + | chr8_4:3078717-3078736 | Msa1307480:intron | 40.0% | |
| GAATGTTGCAGTAGAGGTTT+GGG | + | chr8_4:3078718-3078737 | Msa1307480:intron | 40.0% | |
| TGCTGTGAGAGATCTTAAGA+GGG | + | chr8_4:3078741-3078760 | Msa1307480:CDS | 40.0% | |
| ! | AGCTATGTCTTGCTGTGAAT+AGG | + | chr8_4:3078833-3078852 | Msa1307480:CDS | 40.0% |
| ! | AATCGGATTTGTTCCTCTGT+TGG | + | chr8_4:3079060-3079079 | Msa1307480:intron | 40.0% |
| AACAGAGTCTGATCAAGAGA+CGG | + | chr8_4:3079169-3079188 | Msa1307480:intron | 40.0% | |
| AAGAGACGGACCTAATTAAC+AGG | + | chr8_4:3079183-3079202 | Msa1307480:intron | 40.0% | |
| TTCCTCTAGTCCCTTTAGAT+CGG | + | chr8_4:3079325-3079344 | Msa1307480:intron | 40.0% | |
| ACATCACATTGGACTCATGA+AGG | - | chr8_4:3079372-3079391 | None:intergenic | 40.0% | |
| TTGTTCACGTGTTACAACAG+TGG | + | chr8_4:3079425-3079444 | Msa1307480:intron | 40.0% | |
| TATAAAAGGAGACCCTTAGG+AGG | - | chr8_4:3079535-3079554 | None:intergenic | 40.0% | |
| GACTATAAAAGGAGACCCTT+AGG | - | chr8_4:3079538-3079557 | None:intergenic | 40.0% | |
| CCCATCAAGTCAACAAATTG+AGG | - | chr8_4:3079560-3079579 | None:intergenic | 40.0% | |
| GCAACAACTGTGTGTGAATT+AGG | + | chr8_4:3079603-3079622 | Msa1307480:intron | 40.0% | |
| CTGTGCAAATCAGCTTATTG+TGG | - | chr8_4:3079779-3079798 | None:intergenic | 40.0% | |
| ACAAATGTCTACGCCTTAAC+AGG | - | chr8_4:3079879-3079898 | None:intergenic | 40.0% | |
| !! | ACATTTGGTGGACTGTAAAC+TGG | - | chr8_4:3079923-3079942 | None:intergenic | 40.0% |
| ATTGCACACTTCAGGCAATT+TGG | - | chr8_4:3080011-3080030 | None:intergenic | 40.0% | |
| TCTCTAACATTGCACACTTC+AGG | - | chr8_4:3080019-3080038 | None:intergenic | 40.0% | |
| GACTAATGGTCTGTTTGGAT+TGG | + | chr8_4:3080037-3080056 | Msa1307480:intron | 40.0% | |
| TGTGTCCAAACAGGTCTAAA+TGG | + | chr8_4:3080303-3080322 | Msa1307480:intron | 40.0% | |
| CTTGACCATTTAGACCTGTT+TGG | - | chr8_4:3080311-3080330 | None:intergenic | 40.0% | |
| GAAACCAAATCCTAACAGGT+GGG | - | chr8_4:3080431-3080450 | None:intergenic | 40.0% | |
| TGAAACCAAATCCTAACAGG+TGG | - | chr8_4:3080432-3080451 | None:intergenic | 40.0% | |
| TTGGTAAGGGAAAGACTTCA+AGG | + | chr8_4:3080556-3080575 | Msa1307480:CDS | 40.0% | |
| AGTCATAACTTTGCGGCAAA+TGG | - | chr8_4:3080599-3080618 | None:intergenic | 40.0% | |
| GCTAGCAAGTCATAACTTTG+CGG | - | chr8_4:3080606-3080625 | None:intergenic | 40.0% | |
| !! | TATGACTTGCTAGCCATGTT+TGG | + | chr8_4:3080612-3080631 | Msa1307480:CDS | 40.0% |
| TAACAGAGACTGAACTTGCA+GGG | - | chr8_4:3080655-3080674 | None:intergenic | 40.0% | |
| ! | AGAATGGCGAGGCAAATTTT+AGG | + | chr8_4:3081040-3081059 | Msa1307480:intron | 40.0% |
| ! | GGCTGCAATGACGTTTTATA+TGG | + | chr8_4:3081114-3081133 | Msa1307480:intron | 40.0% |
| TCATACTGAGTAGCGTAAAG+TGG | - | chr8_4:3081207-3081226 | None:intergenic | 40.0% | |
| !! | TCGTCAAATAACGGATAGAG+CGG | + | chr8_4:3081231-3081250 | Msa1307480:intron | 40.0% |
| TTATCGGCGATTGACATCAT+TGG | + | chr8_4:3081301-3081320 | Msa1307480:intron | 40.0% | |
| CATTGATCCAAGTACCAGAA+AGG | - | chr8_4:3081363-3081382 | None:intergenic | 40.0% | |
| TCGGACATTGCATATACCAT+GGG | + | chr8_4:3081592-3081611 | Msa1307480:CDS | 40.0% | |
| CATTCTCAGAGACTAACTGA+TGG | + | chr8_4:3081743-3081762 | Msa1307480:CDS | 40.0% | |
| ATCAGGTAGTGCACAATTCT+TGG | + | chr8_4:3081828-3081847 | Msa1307480:intron | 40.0% | |
| ATGCCTTATCCACTAAACAG+TGG | - | chr8_4:3082079-3082098 | None:intergenic | 40.0% | |
| !!! | CAAGTTACCTTGTTTTCACC+AGG | + | chr8_4:3082101-3082120 | Msa1307480:intron | 40.0% |
| CACCAGGTTCTATTATGCTA+TGG | + | chr8_4:3082117-3082136 | Msa1307480:intron | 40.0% | |
| TGTACATAGCAGGTTCCAAA+GGG | - | chr8_4:3082218-3082237 | None:intergenic | 40.0% | |
| ! | GAAGTAGAAGTGTACATAGC+AGG | - | chr8_4:3082228-3082247 | None:intergenic | 40.0% |
| CACTTCTACTTCATGGTCTA+AGG | + | chr8_4:3082236-3082255 | Msa1307480:CDS | 40.0% | |
| AATCACTCTATCCATCCCAA+CGG | + | chr8_4:3082259-3082278 | Msa1307480:CDS | 40.0% | |
| !! | GTACGAGTTCTGAAAGAGCT+AGG | + | chr8_4:3078372-3078391 | Msa1307480:five_prime_UTR | 45.0% |
| !! | GAATGGTCGGTGTTTGTTGT+TGG | - | chr8_4:3078474-3078493 | None:intergenic | 45.0% |
| CAACACTCTCTTTCCTCTCT+TGG | + | chr8_4:3078495-3078514 | Msa1307480:CDS | 45.0% | |
| GTTTCTACCTTTCCTCACTC+TGG | + | chr8_4:3078531-3078550 | Msa1307480:CDS | 45.0% | |
| GTGCTGTGAGAGATCTTAAG+AGG | + | chr8_4:3078740-3078759 | Msa1307480:CDS | 45.0% | |
| GCTGTGAGAGATCTTAAGAG+GGG | + | chr8_4:3078742-3078761 | Msa1307480:CDS | 45.0% | |
| GTTCCTCTGTTGGTATTCGT+AGG | + | chr8_4:3079070-3079089 | Msa1307480:intron | 45.0% | |
| GTTCCTACGAATACCAACAG+AGG | - | chr8_4:3079076-3079095 | None:intergenic | 45.0% | |
| AACCGATCTAAAGGGACTAG+AGG | - | chr8_4:3079330-3079349 | None:intergenic | 45.0% | |
| ATGCTCTGATTTCACGTGTC+AGG | - | chr8_4:3079695-3079714 | None:intergenic | 45.0% | |
| AGGTCGTGAGACACTTGAAT+GGG | + | chr8_4:3079752-3079771 | Msa1307480:intron | 45.0% | |
| TTAACAGGCTTGACGTTTGG+TGG | - | chr8_4:3079864-3079883 | None:intergenic | 45.0% | |
| ACCAAACGTCAAGCCTGTTA+AGG | + | chr8_4:3079863-3079882 | Msa1307480:intron | 45.0% | |
| TAAACTGGTATGGGTCGATC+AGG | - | chr8_4:3079908-3079927 | None:intergenic | 45.0% | |
| !! | GGTGGACTGTAAACTGGTAT+GGG | - | chr8_4:3079917-3079936 | None:intergenic | 45.0% |
| !! | TGGTGGACTGTAAACTGGTA+TGG | - | chr8_4:3079918-3079937 | None:intergenic | 45.0% |
| GTAAGGGAAAGACTTCAAGG+TGG | + | chr8_4:3080559-3080578 | Msa1307480:CDS | 45.0% | |
| CTAACAGAGACTGAACTTGC+AGG | - | chr8_4:3080656-3080675 | None:intergenic | 45.0% | |
| ATCAGGTGGATGAAGCTATG+TGG | + | chr8_4:3080783-3080802 | Msa1307480:intron | 45.0% | |
| TCAGGTGGATGAAGCTATGT+GGG | + | chr8_4:3080784-3080803 | Msa1307480:intron | 45.0% | |
| GAAAGAAGCTCATGCCTTGA+TGG | + | chr8_4:3080844-3080863 | Msa1307480:CDS | 45.0% | |
| AGCGTAGCAGTGTGGTTAAA+TGG | + | chr8_4:3080996-3081015 | Msa1307480:intron | 45.0% | |
| GTAGCAGTGTGGTTAAATGG+TGG | + | chr8_4:3080999-3081018 | Msa1307480:intron | 45.0% | |
| GTGTGGTTAAATGGTGGTCA+TGG | + | chr8_4:3081005-3081024 | Msa1307480:intron | 45.0% | |
| TTGTGAATGAATGCCCACCA+TGG | + | chr8_4:3081081-3081100 | Msa1307480:intron | 45.0% | |
| TAAAACGTCATTGCAGCCCA+TGG | - | chr8_4:3081112-3081131 | None:intergenic | 45.0% | |
| ATAATGTTGTCAACGGCGGA+AGG | - | chr8_4:3081151-3081170 | None:intergenic | 45.0% | |
| ! | TTGCTTGCCTTTCTGGTACT+TGG | + | chr8_4:3081353-3081372 | Msa1307480:intron | 45.0% |
| GCAATGTCCGAGAAGATATC+TGG | - | chr8_4:3081583-3081602 | None:intergenic | 45.0% | |
| CTCGGACATTGCATATACCA+TGG | + | chr8_4:3081591-3081610 | Msa1307480:CDS | 45.0% | |
| CATATACCATGGGATGAAGC+TGG | + | chr8_4:3081602-3081621 | Msa1307480:CDS | 45.0% | |
| AAACAACCAGCTTCATCCCA+TGG | - | chr8_4:3081611-3081630 | None:intergenic | 45.0% | |
| CTACGTCGTCAATACCAGAT+AGG | - | chr8_4:3081664-3081683 | None:intergenic | 45.0% | |
| TCTCAGAGACTAACTGATGG+TGG | + | chr8_4:3081746-3081765 | Msa1307480:CDS | 45.0% | |
| CTCAGAGACTAACTGATGGT+GGG | + | chr8_4:3081747-3081766 | Msa1307480:CDS | 45.0% | |
| GTGTACATAGCAGGTTCCAA+AGG | - | chr8_4:3082219-3082238 | None:intergenic | 45.0% | |
| ! | GCAAACGAAGGTTTTCCGTT+GGG | - | chr8_4:3082277-3082296 | None:intergenic | 45.0% |
| GCAGAGAGAATGACCAAGAG+AGG | - | chr8_4:3078511-3078530 | None:intergenic | 50.0% | |
| TCTACCTTTCCTCACTCTGG+CGG | + | chr8_4:3078534-3078553 | Msa1307480:CDS | 50.0% | |
| CTCTTCTCTCTCCTCTGTTC+AGG | + | chr8_4:3078858-3078877 | Msa1307480:CDS | 50.0% | |
| TTACAACAGTGGAGCTGCCT+AGG | + | chr8_4:3079436-3079455 | Msa1307480:intron | 50.0% | |
| GTATTCTTGGAGCTCCTCCT+AGG | - | chr8_4:3079456-3079475 | None:intergenic | 50.0% | |
| ATGAGCGTAAGTGCCTCCTA+AGG | + | chr8_4:3079519-3079538 | Msa1307480:intron | 50.0% | |
| TGAGCGTAAGTGCCTCCTAA+GGG | + | chr8_4:3079520-3079539 | Msa1307480:intron | 50.0% | |
| CAGGTCGTGAGACACTTGAA+TGG | + | chr8_4:3079751-3079770 | Msa1307480:intron | 50.0% | |
| ! | CTGATTTGCACAGCCCAGTT+GGG | + | chr8_4:3079786-3079805 | Msa1307480:intron | 50.0% |
| ! | TGATTTGCACAGCCCAGTTG+GGG | + | chr8_4:3079787-3079806 | Msa1307480:intron | 50.0% |
| ! | TGCCATGGTTGGTGTGACTA+TGG | + | chr8_4:3079817-3079836 | Msa1307480:intron | 50.0% |
| GACCATAGTCACACCAACCA+TGG | - | chr8_4:3079822-3079841 | None:intergenic | 50.0% | |
| !! | ACGTTTGGTGGACTGTGGTT+TGG | - | chr8_4:3079852-3079871 | None:intergenic | 50.0% |
| GCCTTAACAGGCTTGACGTT+TGG | - | chr8_4:3079867-3079886 | None:intergenic | 50.0% | |
| ! | AACAGGTGGGCTCAATGCTT+TGG | - | chr8_4:3080418-3080437 | None:intergenic | 50.0% |
| !! | AAGCATTGAGCCCACCTGTT+AGG | + | chr8_4:3080418-3080437 | Msa1307480:intron | 50.0% |
| TGAGCCCACCTGTTAGGATT+TGG | + | chr8_4:3080424-3080443 | Msa1307480:intron | 50.0% | |
| AACTTTGCGGCAAATGGACG+AGG | - | chr8_4:3080593-3080612 | None:intergenic | 50.0% | |
| GTTGCTATAGCGTAGCAGTG+TGG | + | chr8_4:3080988-3081007 | Msa1307480:intron | 50.0% | |
| GCTGGTTGTTTATGCCCTGT+TGG | + | chr8_4:3081620-3081639 | Msa1307480:CDS | 50.0% | |
| CTCCAGGTGCATTACCAACA+GGG | - | chr8_4:3081637-3081656 | None:intergenic | 50.0% | |
| TCTCCAGGTGCATTACCAAC+AGG | - | chr8_4:3081638-3081657 | None:intergenic | 50.0% | |
| !! | TGTTGGTAATGCACCTGGAG+AGG | + | chr8_4:3081637-3081656 | Msa1307480:CDS | 50.0% |
| ATACCAGATAGGTCCTCTCC+AGG | - | chr8_4:3081653-3081672 | None:intergenic | 50.0% | |
| ! | ACGAAGGTTTTCCGTTGGGA+TGG | - | chr8_4:3082273-3082292 | None:intergenic | 50.0% |
| ! | CGCAAACGAAGGTTTTCCGT+TGG | - | chr8_4:3082278-3082297 | None:intergenic | 50.0% |
| TACTAGCTGCGTTACGACTG+TGG | + | chr8_4:3082299-3082318 | Msa1307480:CDS | 50.0% | |
| ACTAGCTGCGTTACGACTGT+GGG | + | chr8_4:3082300-3082319 | Msa1307480:CDS | 50.0% | |
| CTACCTTTCCTCACTCTGGC+GGG | + | chr8_4:3078535-3078554 | Msa1307480:CDS | 55.0% | |
| TTACCCGCCAGAGTGAGGAA+AGG | - | chr8_4:3078541-3078560 | None:intergenic | 55.0% | |
| ! | TGACTTGATGGGCCTCTCGT+TGG | + | chr8_4:3079568-3079587 | Msa1307480:intron | 55.0% |
| ! | TTGATGGGCCTCTCGTTGGT+TGG | + | chr8_4:3079572-3079591 | Msa1307480:intron | 55.0% |
| ! | CTCTCGTTGGTTGGCTGGTA+CGG | + | chr8_4:3079581-3079600 | Msa1307480:intron | 55.0% |
| TCAGCTTCCCATGCCCTGTA+CGG | - | chr8_4:3079640-3079659 | None:intergenic | 55.0% | |
| !! | GCTGATTTGCACAGCCCAGT+TGG | + | chr8_4:3079785-3079804 | Msa1307480:intron | 55.0% |
| GATTTGCACAGCCCAGTTGG+GGG | + | chr8_4:3079788-3079807 | Msa1307480:intron | 55.0% | |
| !! | GCTTGACGTTTGGTGGACTG+TGG | - | chr8_4:3079857-3079876 | None:intergenic | 55.0% |
| TGCGGCAAATGGACGAGGTA+AGG | - | chr8_4:3080588-3080607 | None:intergenic | 55.0% | |
| !! | ATGGCTTTGGGCTGCTGCAA+CGG | + | chr8_4:3080907-3080926 | Msa1307480:CDS | 55.0% |
| TTTGCCTCGCCATTCTGCCA+TGG | - | chr8_4:3081036-3081055 | None:intergenic | 55.0% | |
| !! | TGCCCTGTTGGTAATGCACC+TGG | + | chr8_4:3081632-3081651 | Msa1307480:CDS | 55.0% |
| GCAGCTAGTAGCGCAAACGA+AGG | - | chr8_4:3082289-3082308 | None:intergenic | 55.0% | |
| ! | TCCTCACTCTGGCGGGTAAC+TGG | + | chr8_4:3078542-3078561 | Msa1307480:intron | 60.0% |
| CAACAGTGGAGCTGCCTAGG+AGG | + | chr8_4:3079439-3079458 | Msa1307480:intron | 60.0% | |
| CGTACCAGCCAACCAACGAG+AGG | - | chr8_4:3079583-3079602 | None:intergenic | 60.0% | |
| AGGTTGCAGCTCGTCCGTAC+AGG | + | chr8_4:3079623-3079642 | Msa1307480:intron | 60.0% | |
| GGTTGCAGCTCGTCCGTACA+GGG | + | chr8_4:3079624-3079643 | Msa1307480:intron | 60.0% | |
| AGCTCGTCCGTACAGGGCAT+GGG | + | chr8_4:3079630-3079649 | Msa1307480:intron | 60.0% | |
| !! | ATGGTGCCGCCATGGCAGAA+TGG | + | chr8_4:3081024-3081043 | Msa1307480:intron | 60.0% |
| TGCCCACCATGGAGTCTCCA+TGG | + | chr8_4:3081092-3081111 | Msa1307480:intron | 60.0% | |
| GCCCACCATGGAGTCTCCAT+GGG | + | chr8_4:3081093-3081112 | Msa1307480:intron | 60.0% | |
| GCCCATGGAGACTCCATGGT+GGG | - | chr8_4:3081097-3081116 | None:intergenic | 60.0% | |
| AGCCCATGGAGACTCCATGG+TGG | - | chr8_4:3081098-3081117 | None:intergenic | 60.0% | |
| TGCAGCCCATGGAGACTCCA+TGG | - | chr8_4:3081101-3081120 | None:intergenic | 60.0% | |
| GCACCTGGAGAGGACCTATC+TGG | + | chr8_4:3081647-3081666 | Msa1307480:CDS | 60.0% | |
| GCCAGTTACCCGCCAGAGTG+AGG | - | chr8_4:3078546-3078565 | None:intergenic | 65.0% | |
| ! | TGGGCCTCTCGTTGGTTGGC+TGG | + | chr8_4:3079576-3079595 | Msa1307480:intron | 65.0% |
| CAGCTCGTCCGTACAGGGCA+TGG | + | chr8_4:3079629-3079648 | Msa1307480:intron | 65.0% | |
| GCTTACGTCACTGTGCCGCG+TGG | + | chr8_4:3079728-3079747 | Msa1307480:intron | 65.0% | |
| GTGTCTCACGACCTGCCACG+CGG | - | chr8_4:3079746-3079765 | None:intergenic | 65.0% | |
| !! | TGGTGGTCATGGTGCCGCCA+TGG | + | chr8_4:3081016-3081035 | Msa1307480:intron | 65.0% |
| GCCTCGCCATTCTGCCATGG+CGG | - | chr8_4:3081033-3081052 | None:intergenic | 65.0% | |
| ACGTCACTGTGCCGCGTGGC+AGG | + | chr8_4:3079732-3079751 | Msa1307480:intron | 70.0% | |
| TGGCAAGCGCGCCCCCAACT+GGG | - | chr8_4:3079802-3079821 | None:intergenic | 70.0% | |
| ATGGCAAGCGCGCCCCCAAC+TGG | - | chr8_4:3079803-3079822 | None:intergenic | 70.0% | |
| ! | AGTTGGGGGCGCGCTTGCCA+TGG | + | chr8_4:3079802-3079821 | Msa1307480:intron | 70.0% |
| GCCGCCATGGCAGAATGGCG+AGG | + | chr8_4:3081029-3081048 | Msa1307480:intron | 70.0% | |
| ! | GGGGGCGCGCTTGCCATGGT+TGG | + | chr8_4:3079806-3079825 | Msa1307480:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 3078352 | 3082537 | 3078352 | ID=Msa1307480;Name=Msa1307480 |
| chr8_4 | mRNA | 3078352 | 3082537 | 3078352 | ID=Msa1307480-mRNA-1;Parent=Msa1307480;Name=Msa1307480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=50|1|1|1|1|1|6|112|376 |
| chr8_4 | exon | 3078352 | 3078556 | 3078352 | ID=Msa1307480-mRNA-1:exon:889;Parent=Msa1307480-mRNA-1 |
| chr8_4 | exon | 3078729 | 3078879 | 3078729 | ID=Msa1307480-mRNA-1:exon:890;Parent=Msa1307480-mRNA-1 |
| chr8_4 | exon | 3080528 | 3080659 | 3080528 | ID=Msa1307480-mRNA-1:exon:891;Parent=Msa1307480-mRNA-1 |
| chr8_4 | exon | 3080788 | 3080928 | 3080788 | ID=Msa1307480-mRNA-1:exon:892;Parent=Msa1307480-mRNA-1 |
| chr8_4 | exon | 3081584 | 3081832 | 3081584 | ID=Msa1307480-mRNA-1:exon:893;Parent=Msa1307480-mRNA-1 |
| chr8_4 | exon | 3082123 | 3082537 | 3082123 | ID=Msa1307480-mRNA-1:exon:894;Parent=Msa1307480-mRNA-1 |
| chr8_4 | five_prime_UTR | 3078352 | 3078401 | 3078352 | ID=Msa1307480-mRNA-1:five_prime_utr;Parent=Msa1307480-mRNA-1 |
| chr8_4 | CDS | 3078402 | 3078556 | 3078402 | ID=Msa1307480-mRNA-1:cds;Parent=Msa1307480-mRNA-1 |
| chr8_4 | CDS | 3078729 | 3078879 | 3078729 | ID=Msa1307480-mRNA-1:cds;Parent=Msa1307480-mRNA-1 |
| chr8_4 | CDS | 3080528 | 3080659 | 3080528 | ID=Msa1307480-mRNA-1:cds;Parent=Msa1307480-mRNA-1 |
| chr8_4 | CDS | 3080788 | 3080928 | 3080788 | ID=Msa1307480-mRNA-1:cds;Parent=Msa1307480-mRNA-1 |
| chr8_4 | CDS | 3081584 | 3081832 | 3081584 | ID=Msa1307480-mRNA-1:cds;Parent=Msa1307480-mRNA-1 |
| chr8_4 | CDS | 3082123 | 3082425 | 3082123 | ID=Msa1307480-mRNA-1:cds;Parent=Msa1307480-mRNA-1 |
| chr8_4 | three_prime_UTR | 3082426 | 3082537 | 3082426 | ID=Msa1307480-mRNA-1:three_prime_utr;Parent=Msa1307480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
