AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1308490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1308490 MtrunA17_Chr8g0335131 98.366 306 4 1 1 306 1 305 0.0 621
Msa1308490 MtrunA17_Chr5g0399491 58.710 310 95 11 3 304 4 288 6.65e-100 295
Msa1308490 MtrunA17_Chr4g0055851 58.249 297 90 10 1 297 3 265 7.78e-96 284
Msa1308490 MtrunA17_Chr7g0258831 64.706 187 51 4 78 260 98 273 2.83e-70 219
Msa1308490 MtrunA17_Chr1g0175651 70.625 160 28 4 103 262 129 269 1.36e-67 213
Msa1308490 MtrunA17_Chr2g0308611 74.648 142 31 2 129 270 187 323 6.40e-66 210
Msa1308490 MtrunA17_Chr4g0054421 74.809 131 27 2 129 259 115 239 4.66e-64 203
Msa1308490 MtrunA17_Chr5g0400781 65.986 147 44 2 140 281 117 262 2.93e-62 198
Msa1308490 MtrunA17_Chr1g0151971 54.913 173 64 6 91 260 84 245 4.55e-53 175
Msa1308490 MtrunA17_Chr4g0044091 63.710 124 40 1 140 258 59 182 8.13e-50 164
Msa1308490 MtrunA17_Chr2g0299031 57.031 128 48 1 132 259 75 195 5.34e-43 147
Msa1308490 MtrunA17_Chr3g0135331 64.516 124 42 2 145 268 144 265 5.98e-43 149
Msa1308490 MtrunA17_Chr4g0071411 62.281 114 40 1 148 258 90 203 8.84e-38 133
Msa1308490 MtrunA17_Chr6g0450991 43.519 108 61 0 143 250 64 171 2.35e-19 86.3
Msa1308490 MtrunA17_Chr7g0217111 47.222 108 48 2 132 235 71 173 2.59e-19 85.9
Msa1308490 MtrunA17_Chr5g0416391 47.059 102 48 1 132 233 69 164 4.41e-19 85.5
Msa1308490 MtrunA17_Chr6g0453021 40.164 122 73 0 112 233 62 183 1.46e-18 84.0
Msa1308490 MtrunA17_Chr4g0060031 45.690 116 61 1 120 233 67 182 2.08e-18 84.3
Msa1308490 MtrunA17_Chr8g0362151 45.545 101 49 1 132 232 69 163 2.99e-18 83.2
Msa1308490 MtrunA17_Chr5g0415941 48.515 101 44 2 146 239 87 186 7.86e-18 82.4
Msa1308490 MtrunA17_Chr3g0123691 36.875 160 79 5 136 285 49 196 2.70e-17 80.5
Msa1308490 MtrunA17_Chr7g0265521 36.806 144 87 3 140 280 56 198 7.70e-17 78.2
Msa1308490 MtrunA17_Chr3g0119291 37.857 140 82 2 146 281 59 197 1.18e-16 78.2
Msa1308490 MtrunA17_Chr8g0381741 37.838 148 79 4 133 273 43 184 2.67e-16 77.8
Msa1308490 MtrunA17_Chr8g0362751 46.809 94 43 1 146 232 89 182 7.26e-16 76.3
Msa1308490 MtrunA17_Chr1g0179581 45.455 88 47 1 141 228 24 110 7.48e-16 72.4
Msa1308490 MtrunA17_Chr5g0403691 42.593 108 59 2 135 240 43 149 1.29e-12 66.2
Msa1308490 MtrunA17_Chr5g0403701 41.667 108 57 2 133 240 41 142 1.59e-12 65.5
Msa1308490 MtrunA17_Chr3g0127511 41.667 96 43 2 149 234 41 133 1.93e-11 63.2
Msa1308490 MtrunA17_Chr8g0346251 33.588 131 74 2 150 280 45 162 4.87e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1308490 AT3G60390.1 59.396 298 93 9 16 303 30 309 1.38e-102 303
Msa1308490 AT5G47370.1 53.674 313 87 13 1 301 3 269 2.01e-89 268
Msa1308490 AT2G44910.1 55.183 328 111 12 1 304 1 316 9.57e-88 265
Msa1308490 AT4G17460.1 52.769 307 98 11 1 299 3 270 2.99e-85 258
Msa1308490 AT4G16780.1 55.082 305 88 9 1 296 2 266 1.15e-83 254
Msa1308490 AT5G06710.1 66.138 189 49 5 90 271 134 314 7.62e-73 228
Msa1308490 AT4G37790.1 60.795 176 59 3 120 295 106 271 1.47e-65 207
Msa1308490 AT2G22800.1 75.833 120 28 1 140 259 107 225 3.78e-61 196
Msa1308490 AT2G01430.1 52.000 175 77 4 109 281 101 270 8.43e-50 167
Msa1308490 AT1G70920.2 56.028 141 48 2 130 270 29 155 3.65e-41 141
Msa1308490 AT1G70920.1 56.028 141 48 2 130 270 59 185 4.12e-41 142
Msa1308490 AT5G06710.4 59.649 114 32 4 91 197 135 241 6.45e-30 114
Msa1308490 AT1G69780.1 44.118 136 66 2 98 233 47 172 7.37e-22 93.6
Msa1308490 AT2G01430.2 53.846 91 39 2 109 197 101 190 8.51e-22 91.7
Msa1308490 AT1G26960.1 44.444 117 56 2 120 233 48 158 5.17e-19 85.1
Msa1308490 AT3G01470.1 48.387 93 41 1 146 231 68 160 1.39e-17 81.3
Msa1308490 AT5G65310.1 42.478 113 58 1 128 233 54 166 4.69e-17 80.5
Msa1308490 AT5G65310.2 42.478 113 58 1 128 233 36 148 5.60e-17 80.1
Msa1308490 AT5G15150.1 47.872 94 45 1 146 235 115 208 5.37e-16 77.4
Msa1308490 AT3G01220.1 45.745 94 47 1 146 235 87 180 2.14e-15 75.5
Msa1308490 AT5G03790.1 43.820 89 50 0 146 234 77 165 2.78e-15 74.3
Msa1308490 AT2G18550.1 43.137 102 53 1 140 241 55 151 9.06e-15 72.4
Msa1308490 AT4G40060.1 43.299 97 48 1 144 233 57 153 1.38e-14 73.2
Msa1308490 AT1G27045.4 45.833 96 45 1 146 234 68 163 2.83e-14 71.6
Msa1308490 AT1G27045.1 56.061 66 29 0 146 211 68 133 3.90e-14 70.9
Msa1308490 AT2G22430.1 45.833 96 48 1 144 235 60 155 4.64e-14 72.0
Msa1308490 AT1G27045.5 56.061 66 29 0 146 211 25 90 5.71e-14 69.3
Msa1308490 AT1G27045.3 56.061 66 29 0 146 211 25 90 5.71e-14 69.3
Msa1308490 AT1G27045.2 56.061 66 29 0 146 211 17 82 5.79e-14 69.3
Msa1308490 AT2G36610.1 36.937 111 58 2 136 234 57 167 1.97e-13 68.2
Msa1308490 AT2G46680.1 42.105 95 51 1 149 239 35 129 5.17e-13 68.2
Msa1308490 AT2G46680.2 42.045 88 51 0 149 236 35 122 5.95e-13 68.2
Msa1308490 AT4G36740.2 40.385 104 55 2 138 241 50 146 6.58e-13 67.4
Msa1308490 AT4G36740.1 40.385 104 55 2 138 241 49 145 7.00e-13 67.0
Msa1308490 AT5G03790.2 41.758 91 53 0 146 236 77 167 1.92e-12 65.5
Msa1308490 AT3G61890.1 33.333 126 84 0 149 274 33 158 1.81e-11 63.5
Msa1308490 AT5G06710.2 45.000 100 41 4 91 183 135 227 2.62e-11 62.8
Msa1308490 AT5G06710.3 45.000 100 41 4 91 183 135 227 2.62e-11 62.8

Find 131 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATGGTCGGGAACGATTT+TGG 0.169525 8_4:+4765991 None:intergenic
CAGACCATTAGGTGGGTTTA+TGG 0.177251 8_4:+4769075 None:intergenic
AAGAAGGGAAGGACAGAAAA+TGG 0.263745 8_4:+4769010 None:intergenic
TAACCTTGAAAGGATGAAAA+AGG 0.268132 8_4:-4765633 Msa1308490:three_prime_UTR
GAAAGATGATGAATTTAGTT+TGG 0.275241 8_4:-4768908 Msa1308490:CDS
GAAAACACATACCATGAAAA+TGG 0.282242 8_4:+4768758 None:intergenic
ACTTTAGAGTGTGTAAAGTT+TGG 0.319254 8_4:-4765709 Msa1308490:three_prime_UTR
ATTCAAACAAGAGAACAAAA+TGG 0.338276 8_4:-4768935 Msa1308490:exon
CACTTCAGTTTGCTTCAACT+TGG 0.366945 8_4:+4766298 None:intergenic
TTAAGCTTGAGTTTAGGATT+TGG 0.367633 8_4:-4768883 Msa1308490:CDS
AAAGATGATGAATTTAGTTT+GGG 0.373079 8_4:-4768907 Msa1308490:CDS
CTTTGGTTTGTAACCGTTTG+AGG 0.393528 8_4:+4768802 None:intergenic
TGCGGCGGCCGTCGCCGCCA+TGG 0.395192 8_4:+4768174 None:intergenic
GCTAGACAAATGTGTATGTT+TGG 0.400019 8_4:-4765917 Msa1308490:three_prime_UTR
AAAAGGAAGTGCAAGAGCTT+AGG 0.411234 8_4:-4766217 Msa1308490:CDS
TTGGGTTTAAGCTTGAGTTT+AGG 0.412484 8_4:-4768889 Msa1308490:CDS
GGCCAACACCTGTCAACCCT+TGG 0.414534 8_4:-4766028 Msa1308490:CDS
TTTGTGCATGTTTGGTATCA+AGG 0.418072 8_4:+4765829 None:intergenic
AGTGTATGTCACAGACCATT+AGG 0.420317 8_4:+4769064 None:intergenic
TATAAGAAATGGAGGAAAGA+TGG 0.424033 8_4:+4769105 None:intergenic
CTATATATAGATACATACTA+TGG 0.429771 8_4:+4769130 None:intergenic
AACCACACCTCCACTTGTCT+TGG 0.434860 8_4:+4767562 None:intergenic
TGGATGGGGTTGGGCAGCTA+TGG 0.436143 8_4:+4769030 None:intergenic
TCGCTCTAGATCCTAGTAGT+AGG 0.437773 8_4:-4765965 Msa1308490:three_prime_UTR
GACAGAAAATGGATGGGGTT+GGG 0.438980 8_4:+4769021 None:intergenic
AAAGGAAGTGCAAGAGCTTA+GGG 0.439484 8_4:-4766216 Msa1308490:CDS
GAGTCGCCTTCAAAGGAGTT+TGG 0.440862 8_4:+4768839 None:intergenic
AGTTATTGAAGGAAACCCTT+TGG 0.441554 8_4:+4768785 None:intergenic
GGTGTTGGCCGTTGAACACT+TGG 0.442745 8_4:+4766041 None:intergenic
TCTGCTTCAGCCAACCCGTC+AGG 0.450595 8_4:-4766065 Msa1308490:CDS
CAACAACCAAACTCCTTTGA+AGG 0.453048 8_4:-4768845 Msa1308490:CDS
GTTGTTGGAAGAAACTTTCA+AGG 0.454317 8_4:-4767936 Msa1308490:CDS
ATGGAGAACAGTATAAGAAA+TGG 0.455065 8_4:+4769094 None:intergenic
ATGCTTGACACGGTGCTGTT+CGG 0.456039 8_4:+4768124 None:intergenic
TTCTCCATAAACCCACCTAA+TGG 0.460282 8_4:-4769079 Msa1308490:five_prime_UTR
TGCACTTTACTTTATAGTGT+TGG 0.462412 8_4:-4765788 Msa1308490:three_prime_UTR
AGCAGCAGCAGCTGCTGATG+AGG 0.465286 8_4:+4766094 None:intergenic
TTTAATTTATTAACCTTGAA+AGG 0.467349 8_4:-4765643 Msa1308490:three_prime_UTR
AAGTTTGGAAATGTTAAAGT+AGG 0.470317 8_4:-4765694 Msa1308490:three_prime_UTR
GCGGCCGTCGCCGCCATGGA+TGG 0.472789 8_4:+4768178 None:intergenic
TTCAAACAAGAGAACAAAAT+GGG 0.475273 8_4:-4768934 Msa1308490:exon
GCCCAAGGGTTGACAGGTGT+TGG 0.475640 8_4:+4766026 None:intergenic
ACGGCGACACGCTCGCATGA+AGG 0.476495 8_4:+4766131 None:intergenic
GCCAACACCTGTCAACCCTT+GGG 0.479663 8_4:-4766027 Msa1308490:CDS
CGCTCTAGATCCTAGTAGTA+GGG 0.480212 8_4:-4765964 Msa1308490:three_prime_UTR
GATGATGACGGCGGAGGTTG+CGG 0.480696 8_4:-4768013 Msa1308490:CDS
AGACTCTAACTGATGAGAAT+AGG 0.482124 8_4:-4766247 Msa1308490:CDS
AACACTTGGGCCTGACGGGT+TGG 0.484425 8_4:+4766055 None:intergenic
CGTTGAACACTTGGGCCTGA+CGG 0.491085 8_4:+4766050 None:intergenic
TTGAGTAAAACATGTTCTCT+AGG 0.495487 8_4:+4765731 None:intergenic
GGTTCATGTTCTCGCGGCGG+CGG 0.496150 8_4:-4768043 Msa1308490:CDS
AGTAGTAGGGTAATGTAGGC+AGG 0.497613 8_4:-4765951 Msa1308490:three_prime_UTR
GAAGGAACAGTCAATGTTGT+TGG 0.498061 8_4:-4767951 Msa1308490:CDS
TCTAGGCCCAAAATAAGAAA+AGG 0.498219 8_4:+4765748 None:intergenic
ATTGCCGCCCAAGGGTTGAC+AGG 0.503094 8_4:+4766020 None:intergenic
AATGTGTATGTTTGGATTCG+CGG 0.503128 8_4:-4765909 Msa1308490:three_prime_UTR
TTCATTTGCATGTAGAGTTG+TGG 0.503551 8_4:+4766179 None:intergenic
TCATTTCTTCGCGGAATAGA+CGG 0.508707 8_4:-4768214 Msa1308490:CDS
GGCGGAGGTTGCGGTGGTGA+CGG 0.513641 8_4:-4768004 Msa1308490:CDS
TGAAAACGACGCCGTCGAAA+GGG 0.514530 8_4:-4768065 Msa1308490:CDS
TGGATAGACATTGCCGCCCA+AGG 0.515878 8_4:+4766011 None:intergenic
CTTTCCACTGATGCTTGACA+CGG 0.517994 8_4:+4768114 None:intergenic
CGGCGACACGCTCGCATGAA+GGG 0.520202 8_4:+4766132 None:intergenic
GGACAGAAAATGGATGGGGT+TGG 0.520522 8_4:+4769020 None:intergenic
AAAATGGAACAAGTTATTGA+AGG 0.520682 8_4:+4768774 None:intergenic
AGGGAAGGACAGAAAATGGA+TGG 0.521815 8_4:+4769014 None:intergenic
TCCTAGTAGTAGGGTAATGT+AGG 0.522460 8_4:-4765955 Msa1308490:three_prime_UTR
AGAAGCGAAAGAGAAGGAAA+CGG 0.525139 8_4:-4768091 Msa1308490:CDS
CATGCACAAGCCTCCTCAAA+CGG 0.530251 8_4:-4768815 Msa1308490:CDS
GGAGCATAATACTCTGAATC+CGG 0.531921 8_4:-4767915 Msa1308490:intron
TATGGAGAAGAGAAATGAAA+GGG 0.532221 8_4:+4769148 None:intergenic
GCCGCATTCGACGATGAAAA+CGG 0.539309 8_4:-4768157 Msa1308490:CDS
ATAAGAAATGGAGGAAAGAT+GGG 0.544830 8_4:+4769106 None:intergenic
ACTACCATCCATGGCGGCGA+CGG 0.547385 8_4:-4768182 Msa1308490:CDS
TGCATGTGAGTCGCCTTCAA+AGG 0.549357 8_4:+4768832 None:intergenic
CAACACTCCACTACCATCCA+TGG 0.551656 8_4:-4768191 Msa1308490:CDS
TAGAGCGAATACTCATGGTC+GGG 0.553208 8_4:+4765980 None:intergenic
CTCTAACTGATGAGAATAGG+AGG 0.555223 8_4:-4766244 Msa1308490:CDS
TCAGAAACAAAAGCAAGCAT+TGG 0.557840 8_4:-4767605 Msa1308490:intron
GTCGCCGCCATGGATGGTAG+TGG 0.558543 8_4:+4768184 None:intergenic
GAGAACAGTATAAGAAATGG+AGG 0.560086 8_4:+4769097 None:intergenic
GGAAAGAGAAGCGAAAGAGA+AGG 0.564040 8_4:-4768097 Msa1308490:CDS
TGAGAATAGGAGGTTGCAAA+AGG 0.565911 8_4:-4766234 Msa1308490:CDS
GGGCACATTGTAAGAGTGGT+GGG 0.566206 8_4:+4766152 None:intergenic
GCCTACATTACCCTACTACT+AGG 0.568684 8_4:+4765954 None:intergenic
CTCAAACGGTTACAAACCAA+AGG 0.569424 8_4:-4768801 Msa1308490:CDS
GGATCTAGAGCGAATACTCA+TGG 0.570023 8_4:+4765975 None:intergenic
TGACGGGTTGGCTGAAGCAG+AGG 0.570759 8_4:+4766067 None:intergenic
ATGAAAACGACGCCGTCGAA+AGG 0.571630 8_4:-4768066 Msa1308490:CDS
GGATAGACATTGCCGCCCAA+GGG 0.571951 8_4:+4766012 None:intergenic
CAAGTTGAAGCAAACTGAAG+TGG 0.573772 8_4:-4766297 Msa1308490:CDS
CTAGAGCGAATACTCATGGT+CGG 0.575049 8_4:+4765979 None:intergenic
CTATGGAGAAGAGAAATGAA+AGG 0.581254 8_4:+4769147 None:intergenic
GGGAAGGACAGAAAATGGAT+GGG 0.582014 8_4:+4769015 None:intergenic
TGGGCAGCTATGGACTATGA+TGG 0.585257 8_4:+4769040 None:intergenic
GACGGGTTGGCTGAAGCAGA+GGG 0.587441 8_4:+4766068 None:intergenic
AACACCTGTCAACCCTTGGG+CGG 0.591322 8_4:-4766024 Msa1308490:CDS
TCAAACGGTTACAAACCAAA+GGG 0.592760 8_4:-4768800 Msa1308490:CDS
ACATTGTAAGAGTGGTGGGA+GGG 0.595529 8_4:+4766156 None:intergenic
GGAAGGACAGAAAATGGATG+GGG 0.596500 8_4:+4769016 None:intergenic
GTGTTGGCCGTTGAACACTT+GGG 0.596735 8_4:+4766042 None:intergenic
AGCCAAGACAAGTGGAGGTG+TGG 0.599876 8_4:-4767564 Msa1308490:CDS
TGGTTTGTAACCGTTTGAGG+AGG 0.599884 8_4:+4768805 None:intergenic
AGCACCGTGTCAAGCATCAG+TGG 0.602338 8_4:-4768118 Msa1308490:CDS
CGTCAGGCCCAAGTGTTCAA+CGG 0.606766 8_4:-4766049 Msa1308490:CDS
AGAACATGAACCCCTTTCGA+CGG 0.611067 8_4:+4768054 None:intergenic
AGGGCACATTGTAAGAGTGG+TGG 0.612401 8_4:+4766151 None:intergenic
CACATTGTAAGAGTGGTGGG+AGG 0.613092 8_4:+4766155 None:intergenic
TGAAGGGCACATTGTAAGAG+TGG 0.614011 8_4:+4766148 None:intergenic
GAAAACGACGCCGTCGAAAG+GGG 0.619048 8_4:-4768064 Msa1308490:CDS
AAGGTATTAAGAAGAAGGGA+AGG 0.624463 8_4:+4768999 None:intergenic
GAATCTGAAGCCAAGACAAG+TGG 0.625066 8_4:-4767572 Msa1308490:CDS
GTAGTAGGGTAATGTAGGCA+GGG 0.627228 8_4:-4765950 Msa1308490:three_prime_UTR
GAAGAAGCTGAGGTTGTCGA+AGG 0.629748 8_4:-4767969 Msa1308490:CDS
GAAACGAGGTCATTTCTTCG+CGG 0.629814 8_4:-4768223 Msa1308490:CDS
GATGACGGCGGAGGTTGCGG+TGG 0.634690 8_4:-4768010 Msa1308490:CDS
AGTGATGATGATGACGGCGG+AGG 0.634764 8_4:-4768019 Msa1308490:CDS
TCTGAAGCCAAGACAAGTGG+AGG 0.635230 8_4:-4767569 Msa1308490:CDS
GTGGTGACGGTGATTCGTCA+AGG 0.643931 8_4:-4767991 Msa1308490:CDS
TATGTCACAGACCATTAGGT+GGG 0.647988 8_4:+4769068 None:intergenic
GTATGTCACAGACCATTAGG+TGG 0.658381 8_4:+4769067 None:intergenic
ATTCGTCAAGGAAGAAGCTG+AGG 0.662832 8_4:-4767979 Msa1308490:CDS
GAAAGGGGTTCATGTTCTCG+CGG 0.668678 8_4:-4768049 Msa1308490:CDS
GGCGGAAGTGATGATGATGA+CGG 0.668902 8_4:-4768025 Msa1308490:CDS
GGGTTGGCTGAAGCAGAGGG+AGG 0.674475 8_4:+4766071 None:intergenic
GGTTTCAAAACAGAAGAGCA+AGG 0.676969 8_4:-4767543 Msa1308490:intron
CAGATCTAAGCACAGAAACG+AGG 0.678976 8_4:-4768237 Msa1308490:CDS
TGAGGACGATGCAGATGACA+CGG 0.688825 8_4:+4766112 None:intergenic
AGGGGTTCATGTTCTCGCGG+CGG 0.699189 8_4:-4768046 Msa1308490:CDS
CACTCCACTACCATCCATGG+CGG 0.704044 8_4:-4768188 Msa1308490:CDS
GGAAGTGATGATGATGACGG+CGG 0.716365 8_4:-4768022 Msa1308490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAAAAAAAAATAAAAA+TGG + chr8_4:4766377-4766396 None:intergenic 0.0%
!!! ATTTTTAAAAAATATTTTAA+CGG + chr8_4:4767863-4767882 None:intergenic 0.0%
!! AAAAATTTAAATAATTAATT+CGG - chr8_4:4767877-4767896 Msa1308490:intron 0.0%
!! AAAAGAAAAAAGAAACAAAA+AGG + chr8_4:4765880-4765899 None:intergenic 15.0%
!!! ATTTCTCTTCATATTTTTTA+GGG - chr8_4:4766238-4766257 Msa1308490:CDS 15.0%
!!! TCATTTTTGGTTTTTTTTTT+TGG - chr8_4:4766282-4766301 Msa1308490:CDS 15.0%
!!! CATTTTTGGTTTTTTTTTTT+GGG - chr8_4:4766283-4766302 Msa1308490:CDS 15.0%
!!! TTTTTCATTATATGATTCAA+GGG + chr8_4:4766350-4766369 None:intergenic 15.0%
!! GTAATTATCAACTAAATTTA+AGG + chr8_4:4766562-4766581 None:intergenic 15.0%
!!! TTGTTTTTATTATTGTTTTG+AGG - chr8_4:4767087-4767106 Msa1308490:intron 15.0%
!!! GTCATTTTTGAATATTAATT+TGG - chr8_4:4767366-4767385 Msa1308490:intron 15.0%
!! TTTATGAGGAATAAAAAATT+AGG - chr8_4:4768181-4768200 Msa1308490:CDS 15.0%
!!! TTATTATAATCTTTTGATGA+TGG - chr8_4:4768300-4768319 Msa1308490:intron 15.0%
!!! TTTAATTTATTAACCTTGAA+AGG - chr8_4:4769214-4769233 Msa1308490:five_prime_UTR 15.0%
!! CTATATATAGATACATACTA+TGG + chr8_4:4765730-4765749 None:intergenic 20.0%
!!! TTGTTTGAATTTTGAAGAAT+GGG + chr8_4:4765912-4765931 None:intergenic 20.0%
!!! AAAGATGATGAATTTAGTTT+GGG - chr8_4:4765950-4765969 Msa1308490:three_prime_UTR 20.0%
!! TGGAAAAAAAATTTGAAGAA+AGG + chr8_4:4766147-4766166 None:intergenic 20.0%
!! GGAATTAAAAATGAAAAGAA+TGG + chr8_4:4766167-4766186 None:intergenic 20.0%
!!! GATTTCTCTTCATATTTTTT+AGG - chr8_4:4766237-4766256 Msa1308490:CDS 20.0%
!! AAAAACCAAAAATGAGAAAT+GGG + chr8_4:4766277-4766296 None:intergenic 20.0%
!! AAAAAACCAAAAATGAGAAA+TGG + chr8_4:4766278-4766297 None:intergenic 20.0%
!!! GTTTTTCATTATATGATTCA+AGG + chr8_4:4766351-4766370 None:intergenic 20.0%
!!! TGTAATTCAGTTTTATGTTA+AGG - chr8_4:4766988-4767007 Msa1308490:intron 20.0%
!!! GTAATTCAGTTTTATGTTAA+GGG - chr8_4:4766989-4767008 Msa1308490:intron 20.0%
!!! TATATTTGGAAGTGTAAATT+TGG - chr8_4:4767044-4767063 Msa1308490:intron 20.0%
!!! TTTTTTTGGTTGAGTAATTA+AGG - chr8_4:4767128-4767147 Msa1308490:intron 20.0%
!!! ACGCAAATTTTTCAAAATTT+AGG - chr8_4:4767501-4767520 Msa1308490:intron 20.0%
!!! ACAAGAAGTATAATTTTAAG+CGG - chr8_4:4767667-4767686 Msa1308490:intron 20.0%
!! TGTAAACTCTTAAAATTGAA+AGG + chr8_4:4768348-4768367 None:intergenic 20.0%
!!! CAAAAAGGTATTAAGAAGAA+GGG + chr8_4:4765865-4765884 None:intergenic 25.0%
!!! ACAAAAAGGTATTAAGAAGA+AGG + chr8_4:4765866-4765885 None:intergenic 25.0%
!!! TGTTTGAATTTTGAAGAATG+GGG + chr8_4:4765911-4765930 None:intergenic 25.0%
!!! CTTGTTTGAATTTTGAAGAA+TGG + chr8_4:4765913-4765932 None:intergenic 25.0%
! ATTCAAACAAGAGAACAAAA+TGG - chr8_4:4765922-4765941 Msa1308490:three_prime_UTR 25.0%
! TTCAAACAAGAGAACAAAAT+GGG - chr8_4:4765923-4765942 Msa1308490:three_prime_UTR 25.0%
! GAAAGATGATGAATTTAGTT+TGG - chr8_4:4765949-4765968 Msa1308490:three_prime_UTR 25.0%
! AAAATGGAACAAGTTATTGA+AGG + chr8_4:4766086-4766105 None:intergenic 25.0%
!!! AATAACTTGTTCCATTTTCA+TGG - chr8_4:4766088-4766107 Msa1308490:CDS 25.0%
! GAAAGGAAACATAGAAATTT+AGG + chr8_4:4766130-4766149 None:intergenic 25.0%
! AAAATTAACAATGCATCAAG+AGG + chr8_4:4766188-4766207 None:intergenic 25.0%
! TATGAAGAGAAATCAAGAAT+GGG + chr8_4:4766231-4766250 None:intergenic 25.0%
! ATATGAAGAGAAATCAAGAA+TGG + chr8_4:4766232-4766251 None:intergenic 25.0%
! AAAACCAAAAATGAGAAATG+GGG + chr8_4:4766276-4766295 None:intergenic 25.0%
! GTTATAACAAAAATGAGAAG+GGG + chr8_4:4766328-4766347 None:intergenic 25.0%
! GGTTATAACAAAAATGAGAA+GGG + chr8_4:4766329-4766348 None:intergenic 25.0%
! TTCATCTCATCAAAGAAAAT+GGG + chr8_4:4766448-4766467 None:intergenic 25.0%
! ATTCATCTCATCAAAGAAAA+TGG + chr8_4:4766449-4766468 None:intergenic 25.0%
!! TTTTATGTTAAGGGCTTATT+TGG - chr8_4:4766998-4767017 Msa1308490:intron 25.0%
!! CTTATTTGGAATTTCATTAC+AGG - chr8_4:4767012-4767031 Msa1308490:intron 25.0%
! GAATTTCATTACAGGATAAA+AGG - chr8_4:4767020-4767039 Msa1308490:intron 25.0%
!! TCAAAATTTAGGATACGATA+CGG - chr8_4:4767512-4767531 Msa1308490:intron 25.0%
! ATTATACTTCTTGTGAATGA+AGG + chr8_4:4767661-4767680 None:intergenic 25.0%
!! TTTACTCTTCATCTTTTTCT+AGG - chr8_4:4767775-4767794 Msa1308490:intron 25.0%
! ACTGTTTGGATCATATTAAT+TGG - chr8_4:4768052-4768071 Msa1308490:CDS 25.0%
!! AACACAACTTAACTTTTATG+AGG - chr8_4:4768167-4768186 Msa1308490:CDS 25.0%
!!! ATAATCTTTTGATGATGGAT+TGG - chr8_4:4768305-4768324 Msa1308490:intron 25.0%
!!! TAATCTTTTGATGATGGATT+GGG - chr8_4:4768306-4768325 Msa1308490:intron 25.0%
! AAGTTTGGAAATGTTAAAGT+AGG - chr8_4:4769163-4769182 Msa1308490:five_prime_UTR 25.0%
TATGGAGAAGAGAAATGAAA+GGG + chr8_4:4765712-4765731 None:intergenic 30.0%
ATAAGAAATGGAGGAAAGAT+GGG + chr8_4:4765754-4765773 None:intergenic 30.0%
TATAAGAAATGGAGGAAAGA+TGG + chr8_4:4765755-4765774 None:intergenic 30.0%
ATGGAGAACAGTATAAGAAA+TGG + chr8_4:4765766-4765785 None:intergenic 30.0%
!! TTTGAATTTTGAAGAATGGG+GGG + chr8_4:4765909-4765928 None:intergenic 30.0%
!! GTTTGAATTTTGAAGAATGG+GGG + chr8_4:4765910-4765929 None:intergenic 30.0%
! TTAAGCTTGAGTTTAGGATT+TGG - chr8_4:4765974-4765993 Msa1308490:exon 30.0%
GAAAACACATACCATGAAAA+TGG + chr8_4:4766102-4766121 None:intergenic 30.0%
!!! GGTTTTTTTTTTTGGGTGAA+TGG - chr8_4:4766290-4766309 Msa1308490:CDS 30.0%
!!! TTTTTTTTGGGTGAATGGTA+AGG - chr8_4:4766295-4766314 Msa1308490:CDS 30.0%
!!! TTTTTTTGGGTGAATGGTAA+GGG - chr8_4:4766296-4766315 Msa1308490:CDS 30.0%
GGGTTATAACAAAAATGAGA+AGG + chr8_4:4766330-4766349 None:intergenic 30.0%
ACAGGATAAAAGGCTATATT+TGG - chr8_4:4767030-4767049 Msa1308490:intron 30.0%
!!! ATTGTTTTGAGGTTATTCTG+AGG - chr8_4:4767098-4767117 Msa1308490:intron 30.0%
!!! TCTGAGGTTGTCTTTTTTTT+TGG - chr8_4:4767114-4767133 Msa1308490:intron 30.0%
TAAACATTGTTGTGATGTTG+TGG - chr8_4:4767400-4767419 Msa1308490:intron 30.0%
GAGACAATGTTGTAAACATT+CGG + chr8_4:4767750-4767769 None:intergenic 30.0%
TAATTAATTCGGATACTTCG+TGG - chr8_4:4767888-4767907 Msa1308490:intron 30.0%
AATTAATTCGGATACTTCGT+GGG - chr8_4:4767889-4767908 Msa1308490:intron 30.0%
TAATATGATCCAAACAGTGT+GGG + chr8_4:4768050-4768069 None:intergenic 30.0%
TTAATATGATCCAAACAGTG+TGG + chr8_4:4768051-4768070 None:intergenic 30.0%
GTTGTATTGTAACAAGTATG+TGG - chr8_4:4768222-4768241 Msa1308490:CDS 30.0%
! TACATTTTTGTGCATGTAGT+AGG + chr8_4:4768271-4768290 None:intergenic 30.0%
! TTGTAGCTTTTGTAGAATCA+TGG - chr8_4:4768976-4768995 Msa1308490:five_prime_UTR 30.0%
!! GATTCATTTTTGTGCATGTT+TGG + chr8_4:4769039-4769058 None:intergenic 30.0%
TGCACTTTACTTTATAGTGT+TGG - chr8_4:4769069-4769088 Msa1308490:five_prime_UTR 30.0%
!! AGTCTAGCCTTTTCTTATTT+TGG - chr8_4:4769102-4769121 Msa1308490:five_prime_UTR 30.0%
!!! GTCTAGCCTTTTCTTATTTT+GGG - chr8_4:4769103-4769122 Msa1308490:five_prime_UTR 30.0%
TTGAGTAAAACATGTTCTCT+AGG + chr8_4:4769129-4769148 None:intergenic 30.0%
!! ACTTTAGAGTGTGTAAAGTT+TGG - chr8_4:4769148-4769167 Msa1308490:five_prime_UTR 30.0%
TAACCTTGAAAGGATGAAAA+AGG - chr8_4:4769224-4769243 Msa1308490:five_prime_UTR 30.0%
CTATGGAGAAGAGAAATGAA+AGG + chr8_4:4765713-4765732 None:intergenic 35.0%
GAGAACAGTATAAGAAATGG+AGG + chr8_4:4765763-4765782 None:intergenic 35.0%
! AAGGTATTAAGAAGAAGGGA+AGG + chr8_4:4765861-4765880 None:intergenic 35.0%
TTGGGTTTAAGCTTGAGTTT+AGG - chr8_4:4765968-4765987 Msa1308490:three_prime_UTR 35.0%
TCAAACGGTTACAAACCAAA+GGG - chr8_4:4766057-4766076 Msa1308490:CDS 35.0%
AGTTATTGAAGGAAACCCTT+TGG + chr8_4:4766075-4766094 None:intergenic 35.0%
! AGAACCCCATTTCTCATTTT+TGG - chr8_4:4766269-4766288 Msa1308490:CDS 35.0%
!!! TTTTTTGGGTGAATGGTAAG+GGG - chr8_4:4766297-4766316 Msa1308490:CDS 35.0%
!! TTTGCATGTGAGTGTTTTAG+TGG + chr8_4:4766592-4766611 None:intergenic 35.0%
GTTGTTGGAAGAAACTTTCA+AGG - chr8_4:4766921-4766940 Msa1308490:intron 35.0%
TCAGAAACAAAAGCAAGCAT+TGG - chr8_4:4767252-4767271 Msa1308490:intron 35.0%
ACAATGTTGTAAACATTCGG+TGG + chr8_4:4767747-4767766 None:intergenic 35.0%
AATATGATCCAAACAGTGTG+GGG + chr8_4:4768049-4768068 None:intergenic 35.0%
! TTTTTGTGCATGTAGTAGGT+GGG + chr8_4:4768267-4768286 None:intergenic 35.0%
! ATTTTTGTGCATGTAGTAGG+TGG + chr8_4:4768268-4768287 None:intergenic 35.0%
CATGTACAAACCAATGTATG+TGG - chr8_4:4768427-4768446 Msa1308490:intron 35.0%
CACAACAAATCCACATACAT+TGG + chr8_4:4768440-4768459 None:intergenic 35.0%
TATTGTGTTCCATGCTGTTA+TGG - chr8_4:4768487-4768506 Msa1308490:intron 35.0%
! TTTTTCCTTCCATAACAGCA+TGG + chr8_4:4768499-4768518 None:intergenic 35.0%
AAAATGTGACATGAGTGCTT+TGG - chr8_4:4768521-4768540 Msa1308490:intron 35.0%
AGACTCTAACTGATGAGAAT+AGG - chr8_4:4768610-4768629 Msa1308490:intron 35.0%
TTCATTTGCATGTAGAGTTG+TGG + chr8_4:4768681-4768700 None:intergenic 35.0%
GCTAGACAAATGTGTATGTT+TGG - chr8_4:4768940-4768959 Msa1308490:five_prime_UTR 35.0%
AATGTGTATGTTTGGATTCG+CGG - chr8_4:4768948-4768967 Msa1308490:five_prime_UTR 35.0%
TTTGTGCATGTTTGGTATCA+AGG + chr8_4:4769031-4769050 None:intergenic 35.0%
TCTAGGCCCAAAATAAGAAA+AGG + chr8_4:4769112-4769131 None:intergenic 35.0%
!! TCTCCTTTTTCATCCTTTCA+AGG + chr8_4:4769230-4769249 None:intergenic 35.0%
TTCTCCATAAACCCACCTAA+TGG - chr8_4:4765778-4765797 Msa1308490:three_prime_UTR 40.0%
TATGTCACAGACCATTAGGT+GGG + chr8_4:4765792-4765811 None:intergenic 40.0%
AGTGTATGTCACAGACCATT+AGG + chr8_4:4765796-4765815 None:intergenic 40.0%
AAGAAGGGAAGGACAGAAAA+TGG + chr8_4:4765850-4765869 None:intergenic 40.0%
CAACAACCAAACTCCTTTGA+AGG - chr8_4:4766012-4766031 Msa1308490:CDS 40.0%
!! CTTTGGTTTGTAACCGTTTG+AGG + chr8_4:4766058-4766077 None:intergenic 40.0%
CTCAAACGGTTACAAACCAA+AGG - chr8_4:4766056-4766075 Msa1308490:CDS 40.0%
TCATTTCTTCGCGGAATAGA+CGG - chr8_4:4766643-4766662 Msa1308490:intron 40.0%
AGAAGCGAAAGAGAAGGAAA+CGG - chr8_4:4766766-4766785 Msa1308490:intron 40.0%
GAAGGAACAGTCAATGTTGT+TGG - chr8_4:4766906-4766925 Msa1308490:intron 40.0%
GGAGCATAATACTCTGAATC+CGG - chr8_4:4766942-4766961 Msa1308490:intron 40.0%
TACCACTACAACAAACTCAC+CGG + chr8_4:4766964-4766983 None:intergenic 40.0%
GGTTTCAAAACAGAAGAGCA+AGG - chr8_4:4767314-4767333 Msa1308490:intron 40.0%
! ATTTAGGATACGATACGGCT+AGG - chr8_4:4767517-4767536 Msa1308490:intron 40.0%
CTTGTGTATCTGCAGAGTAT+CGG - chr8_4:4767829-4767848 Msa1308490:intron 40.0%
ACAGTGTGGGGTATATAGTA+TGG + chr8_4:4768037-4768056 None:intergenic 40.0%
ACTATATACCCCACACTGTT+TGG - chr8_4:4768038-4768057 Msa1308490:CDS 40.0%
TGTGGCAACATGAGTATGTT+AGG - chr8_4:4768240-4768259 Msa1308490:intron 40.0%
GTGGCAACATGAGTATGTTA+GGG - chr8_4:4768241-4768260 Msa1308490:intron 40.0%
!!! CTTTTGATGATGGATTGGGA+AGG - chr8_4:4768310-4768329 Msa1308490:intron 40.0%
! CACTTCAGTTTGCTTCAACT+TGG + chr8_4:4768562-4768581 None:intergenic 40.0%
! CAAGTTGAAGCAAACTGAAG+TGG - chr8_4:4768560-4768579 Msa1308490:intron 40.0%
CTCTAACTGATGAGAATAGG+AGG - chr8_4:4768613-4768632 Msa1308490:intron 40.0%
TGAGAATAGGAGGTTGCAAA+AGG - chr8_4:4768623-4768642 Msa1308490:intron 40.0%
! AAAAGGAAGTGCAAGAGCTT+AGG - chr8_4:4768640-4768659 Msa1308490:intron 40.0%
! AAAGGAAGTGCAAGAGCTTA+GGG - chr8_4:4768641-4768660 Msa1308490:intron 40.0%
TCCTAGTAGTAGGGTAATGT+AGG - chr8_4:4768902-4768921 Msa1308490:CDS 40.0%
! CAGACCATTAGGTGGGTTTA+TGG + chr8_4:4765785-4765804 None:intergenic 45.0%
GTATGTCACAGACCATTAGG+TGG + chr8_4:4765793-4765812 None:intergenic 45.0%
GACAGAAAATGGATGGGGTT+GGG + chr8_4:4765839-4765858 None:intergenic 45.0%
GGAAGGACAGAAAATGGATG+GGG + chr8_4:4765844-4765863 None:intergenic 45.0%
GGGAAGGACAGAAAATGGAT+GGG + chr8_4:4765845-4765864 None:intergenic 45.0%
AGGGAAGGACAGAAAATGGA+TGG + chr8_4:4765846-4765865 None:intergenic 45.0%
! TGGTTTGTAACCGTTTGAGG+AGG + chr8_4:4766055-4766074 None:intergenic 45.0%
CAGATCTAAGCACAGAAACG+AGG - chr8_4:4766620-4766639 Msa1308490:intron 45.0%
GAAACGAGGTCATTTCTTCG+CGG - chr8_4:4766634-4766653 Msa1308490:intron 45.0%
! TCCGTTTTCATCGTCGAATG+CGG + chr8_4:4766704-4766723 None:intergenic 45.0%
CTTTCCACTGATGCTTGACA+CGG + chr8_4:4766746-4766765 None:intergenic 45.0%
GGAAAGAGAAGCGAAAGAGA+AGG - chr8_4:4766760-4766779 Msa1308490:intron 45.0%
AGAACATGAACCCCTTTCGA+CGG + chr8_4:4766806-4766825 None:intergenic 45.0%
ATTCGTCAAGGAAGAAGCTG+AGG - chr8_4:4766878-4766897 Msa1308490:intron 45.0%
!! ATCCGGTGAGTTTGTTGTAG+TGG - chr8_4:4766959-4766978 Msa1308490:intron 45.0%
! GAATCTGAAGCCAAGACAAG+TGG - chr8_4:4767285-4767304 Msa1308490:intron 45.0%
AGGTGAGCTTTCTTCTTCTC+AGG - chr8_4:4767334-4767353 Msa1308490:intron 45.0%
GGTGAGCTTTCTTCTTCTCA+GGG - chr8_4:4767335-4767354 Msa1308490:intron 45.0%
GTGAGCTTTCTTCTTCTCAG+GGG - chr8_4:4767336-4767355 Msa1308490:intron 45.0%
TGTGCTATGAAGCCCAGATA+CGG - chr8_4:4767440-4767459 Msa1308490:intron 45.0%
CGATACTCTGCAGATACACA+AGG + chr8_4:4767831-4767850 None:intergenic 45.0%
TATCGGATACCGATACTCCA+CGG + chr8_4:4767932-4767951 None:intergenic 45.0%
ATCGGTATCCGATACGTATC+CGG - chr8_4:4767938-4767957 Msa1308490:CDS 45.0%
TATCCGATACGTATCCGGTA+CGG - chr8_4:4767943-4767962 Msa1308490:CDS 45.0%
CACACATAACCTATGAAGCC+CGG + chr8_4:4767991-4768010 None:intergenic 45.0%
GTGTTCCATGCTGTTATGGA+AGG - chr8_4:4768491-4768510 Msa1308490:intron 45.0%
! GTGCTTTGGTTCAATGATGC+AGG - chr8_4:4768535-4768554 Msa1308490:intron 45.0%
! ACATTGTAAGAGTGGTGGGA+GGG + chr8_4:4768704-4768723 None:intergenic 45.0%
! TGAAGGGCACATTGTAAGAG+TGG + chr8_4:4768712-4768731 None:intergenic 45.0%
TAGAGCGAATACTCATGGTC+GGG + chr8_4:4768880-4768899 None:intergenic 45.0%
CTAGAGCGAATACTCATGGT+CGG + chr8_4:4768881-4768900 None:intergenic 45.0%
! GGATCTAGAGCGAATACTCA+TGG + chr8_4:4768885-4768904 None:intergenic 45.0%
! TCGCTCTAGATCCTAGTAGT+AGG - chr8_4:4768892-4768911 Msa1308490:CDS 45.0%
! CGCTCTAGATCCTAGTAGTA+GGG - chr8_4:4768893-4768912 Msa1308490:CDS 45.0%
GCCTACATTACCCTACTACT+AGG + chr8_4:4768906-4768925 None:intergenic 45.0%
AGTAGTAGGGTAATGTAGGC+AGG - chr8_4:4768906-4768925 Msa1308490:CDS 45.0%
GTAGTAGGGTAATGTAGGCA+GGG - chr8_4:4768907-4768926 Msa1308490:CDS 45.0%
!! TATTTATTTATGAATTAAAA+CGG - chr8_4:4766517-4766536 Msa1308490:intron 5.0%
! TGGGCAGCTATGGACTATGA+TGG + chr8_4:4765820-4765839 None:intergenic 50.0%
GGACAGAAAATGGATGGGGT+TGG + chr8_4:4765840-4765859 None:intergenic 50.0%
GAGTCGCCTTCAAAGGAGTT+TGG + chr8_4:4766021-4766040 None:intergenic 50.0%
TGCATGTGAGTCGCCTTCAA+AGG + chr8_4:4766028-4766047 None:intergenic 50.0%
CATGCACAAGCCTCCTCAAA+CGG - chr8_4:4766042-4766061 Msa1308490:CDS 50.0%
CAACACTCCACTACCATCCA+TGG - chr8_4:4766666-4766685 Msa1308490:intron 50.0%
! GTTTTCATCGTCGAATGCGG+CGG + chr8_4:4766701-4766720 None:intergenic 50.0%
GCCGCATTCGACGATGAAAA+CGG - chr8_4:4766700-4766719 Msa1308490:intron 50.0%
!! ATGCTTGACACGGTGCTGTT+CGG + chr8_4:4766736-4766755 None:intergenic 50.0%
ATGAAAACGACGCCGTCGAA+AGG - chr8_4:4766791-4766810 Msa1308490:intron 50.0%
TGAAAACGACGCCGTCGAAA+GGG - chr8_4:4766792-4766811 Msa1308490:intron 50.0%
GAAAGGGGTTCATGTTCTCG+CGG - chr8_4:4766808-4766827 Msa1308490:intron 50.0%
! GGCGGAAGTGATGATGATGA+CGG - chr8_4:4766832-4766851 Msa1308490:intron 50.0%
!! GGAAGTGATGATGATGACGG+CGG - chr8_4:4766835-4766854 Msa1308490:intron 50.0%
GAAGAAGCTGAGGTTGTCGA+AGG - chr8_4:4766888-4766907 Msa1308490:intron 50.0%
! TCTGAAGCCAAGACAAGTGG+AGG - chr8_4:4767288-4767307 Msa1308490:intron 50.0%
AACCACACCTCCACTTGTCT+TGG + chr8_4:4767298-4767317 None:intergenic 50.0%
TGAAGCCCAGATACGGATAC+CGG - chr8_4:4767447-4767466 Msa1308490:intron 50.0%
GTATCGTATCGTACCCGTAC+CGG + chr8_4:4767469-4767488 None:intergenic 50.0%
GGTACGGGTACGATACGATA+CGG - chr8_4:4767468-4767487 Msa1308490:intron 50.0%
GTACGGGTACGATACGATAC+GGG - chr8_4:4767469-4767488 Msa1308490:intron 50.0%
GGTACGATACGATACGGGTA+CGG - chr8_4:4767474-4767493 Msa1308490:intron 50.0%
GTACGATACGATACGGGTAC+GGG - chr8_4:4767475-4767494 Msa1308490:intron 50.0%
ATCCGATACGTATCCGGTAC+GGG - chr8_4:4767944-4767963 Msa1308490:CDS 50.0%
TACCCGTACCGGATACGTAT+CGG + chr8_4:4767949-4767968 None:intergenic 50.0%
!!! CGTCTCCGTTTTGGAGTATC+CGG - chr8_4:4767969-4767988 Msa1308490:CDS 50.0%
!!! GTCTCCGTTTTGGAGTATCC+GGG - chr8_4:4767970-4767989 Msa1308490:CDS 50.0%
GAAGCCCGGATACTCCAAAA+CGG + chr8_4:4767977-4767996 None:intergenic 50.0%
! TTGGAGTATCCGGGCTTCAT+AGG - chr8_4:4767979-4767998 Msa1308490:CDS 50.0%
! CACATTGTAAGAGTGGTGGG+AGG + chr8_4:4768705-4768724 None:intergenic 50.0%
GGGCACATTGTAAGAGTGGT+GGG + chr8_4:4768708-4768727 None:intergenic 50.0%
AGGGCACATTGTAAGAGTGG+TGG + chr8_4:4768709-4768728 None:intergenic 50.0%
TGAGGACGATGCAGATGACA+CGG + chr8_4:4768748-4768767 None:intergenic 50.0%
! GTGTTGGCCGTTGAACACTT+GGG + chr8_4:4768818-4768837 None:intergenic 50.0%
! CTCATGGTCGGGAACGATTT+TGG + chr8_4:4768869-4768888 None:intergenic 50.0%
CACTCCACTACCATCCATGG+CGG - chr8_4:4766669-4766688 Msa1308490:intron 55.0%
AGCACCGTGTCAAGCATCAG+TGG - chr8_4:4766739-4766758 Msa1308490:intron 55.0%
GAAAACGACGCCGTCGAAAG+GGG - chr8_4:4766793-4766812 Msa1308490:intron 55.0%
!! AGTGATGATGATGACGGCGG+AGG - chr8_4:4766838-4766857 Msa1308490:intron 55.0%
!! GTGGTGACGGTGATTCGTCA+AGG - chr8_4:4766866-4766885 Msa1308490:intron 55.0%
AGCCAAGACAAGTGGAGGTG+TGG - chr8_4:4767293-4767312 Msa1308490:intron 55.0%
! CCGTACCGGTATCCGTATCT+GGG + chr8_4:4767455-4767474 None:intergenic 55.0%
CCCAGATACGGATACCGGTA+CGG - chr8_4:4767452-4767471 Msa1308490:intron 55.0%
CCAGATACGGATACCGGTAC+GGG - chr8_4:4767453-4767472 Msa1308490:intron 55.0%
CGATACTCCACGGATACTCG+CGG + chr8_4:4767922-4767941 None:intergenic 55.0%
CGCGAGTATCCGTGGAGTAT+CGG - chr8_4:4767920-4767939 Msa1308490:CDS 55.0%
AAACGGAGACGTACCCGTAC+CGG + chr8_4:4767960-4767979 None:intergenic 55.0%
! GTACGGGTACGTCTCCGTTT+TGG - chr8_4:4767960-4767979 Msa1308490:CDS 55.0%
GTTGAACACTTGGGCCTGAC+GGG + chr8_4:4768809-4768828 None:intergenic 55.0%
CGTTGAACACTTGGGCCTGA+CGG + chr8_4:4768810-4768829 None:intergenic 55.0%
CGTCAGGCCCAAGTGTTCAA+CGG - chr8_4:4768808-4768827 Msa1308490:CDS 55.0%
!! GGTGTTGGCCGTTGAACACT+TGG + chr8_4:4768819-4768838 None:intergenic 55.0%
GCCAACACCTGTCAACCCTT+GGG - chr8_4:4768830-4768849 Msa1308490:CDS 55.0%
AACACCTGTCAACCCTTGGG+CGG - chr8_4:4768833-4768852 Msa1308490:CDS 55.0%
GGATAGACATTGCCGCCCAA+GGG + chr8_4:4768848-4768867 None:intergenic 55.0%
TGGATAGACATTGCCGCCCA+AGG + chr8_4:4768849-4768868 None:intergenic 55.0%
TGGATGGGGTTGGGCAGCTA+TGG + chr8_4:4765830-4765849 None:intergenic 60.0%
ACTACCATCCATGGCGGCGA+CGG - chr8_4:4766675-4766694 Msa1308490:intron 60.0%
AGGGGTTCATGTTCTCGCGG+CGG - chr8_4:4766811-4766830 Msa1308490:intron 60.0%
!! GATGATGACGGCGGAGGTTG+CGG - chr8_4:4766844-4766863 Msa1308490:intron 60.0%
! CCCGTACCGGTATCCGTATC+TGG + chr8_4:4767456-4767475 None:intergenic 60.0%
TGCGTATCCGCGAGTATCCG+TGG - chr8_4:4767912-4767931 Msa1308490:intron 60.0%
AGCAGCAGCAGCTGCTGATG+AGG + chr8_4:4768766-4768785 None:intergenic 60.0%
!! GACGGGTTGGCTGAAGCAGA+GGG + chr8_4:4768792-4768811 None:intergenic 60.0%
!! TGACGGGTTGGCTGAAGCAG+AGG + chr8_4:4768793-4768812 None:intergenic 60.0%
TCTGCTTCAGCCAACCCGTC+AGG - chr8_4:4768792-4768811 Msa1308490:CDS 60.0%
! AACACTTGGGCCTGACGGGT+TGG + chr8_4:4768805-4768824 None:intergenic 60.0%
GGCCAACACCTGTCAACCCT+TGG - chr8_4:4768829-4768848 Msa1308490:CDS 60.0%
GCCCAAGGGTTGACAGGTGT+TGG + chr8_4:4768834-4768853 None:intergenic 60.0%
ATTGCCGCCCAAGGGTTGAC+AGG + chr8_4:4768840-4768859 None:intergenic 60.0%
GTCGCCGCCATGGATGGTAG+TGG + chr8_4:4766676-4766695 None:intergenic 65.0%
GGTTCATGTTCTCGCGGCGG+CGG - chr8_4:4766814-4766833 Msa1308490:intron 65.0%
CGGCGACACGCTCGCATGAA+GGG + chr8_4:4768728-4768747 None:intergenic 65.0%
ACGGCGACACGCTCGCATGA+AGG + chr8_4:4768729-4768748 None:intergenic 65.0%
!! GGGTTGGCTGAAGCAGAGGG+AGG + chr8_4:4768789-4768808 None:intergenic 65.0%
! GATGACGGCGGAGGTTGCGG+TGG - chr8_4:4766847-4766866 Msa1308490:intron 70.0%
GGCGGAGGTTGCGGTGGTGA+CGG - chr8_4:4766853-4766872 Msa1308490:intron 70.0%
! GCGGCCGTCGCCGCCATGGA+TGG + chr8_4:4766682-4766701 None:intergenic 80.0%
! TGCGGCGGCCGTCGCCGCCA+TGG + chr8_4:4766686-4766705 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 4765627 4769252 4765627 ID=Msa1308490;Name=Msa1308490
chr8_4 mRNA 4765627 4769252 4765627 ID=Msa1308490-mRNA-1;Parent=Msa1308490;Name=Msa1308490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=314|1|1|1|1|1|4|365|306
chr8_4 exon 4765627 4766322 4765627 ID=Msa1308490-mRNA-1:exon:1428;Parent=Msa1308490-mRNA-1
chr8_4 exon 4767544 4767623 4767544 ID=Msa1308490-mRNA-1:exon:1427;Parent=Msa1308490-mRNA-1
chr8_4 exon 4767916 4768256 4767916 ID=Msa1308490-mRNA-1:exon:1426;Parent=Msa1308490-mRNA-1
chr8_4 exon 4768770 4769252 4768770 ID=Msa1308490-mRNA-1:exon:1425;Parent=Msa1308490-mRNA-1
chr8_4 five_prime_UTR 4768939 4769252 4768939 ID=Msa1308490-mRNA-1:five_prime_utr;Parent=Msa1308490-mRNA-1
chr8_4 CDS 4768770 4768938 4768770 ID=Msa1308490-mRNA-1:cds;Parent=Msa1308490-mRNA-1
chr8_4 CDS 4767916 4768256 4767916 ID=Msa1308490-mRNA-1:cds;Parent=Msa1308490-mRNA-1
chr8_4 CDS 4767544 4767623 4767544 ID=Msa1308490-mRNA-1:cds;Parent=Msa1308490-mRNA-1
chr8_4 CDS 4765992 4766322 4765992 ID=Msa1308490-mRNA-1:cds;Parent=Msa1308490-mRNA-1
chr8_4 three_prime_UTR 4765627 4765991 4765627 ID=Msa1308490-mRNA-1:three_prime_utr;Parent=Msa1308490-mRNA-1
Gene Sequence

>Msa1308490

ATGGGTGAGAAAGATGATGAATTTAGTTTGGGTTTAAGCTTGAGTTTAGGATTTGGAGAATATGCAAATAACAACAACCAAACTCCTTTGAAGGCGACTCACATGCACAAGCCTCCTCAAACGGTTACAAACCAAAGGGTTTCCTTCAATAACTTGTTCCATTTTCATGATCTAAGCACAGAAACGAGGTCATTTCTTCGCGGAATAGACGGCAACACTCCACTACCATCCATGGCGGCGACGGCCGCCGCATTCGACGATGAAAACGGAGTTTCATCACCGAACAGCACCGTGTCAAGCATCAGTGGAAAGAGAAGCGAAAGAGAAGGAAACGGAGATGAAAACGACGCCGTCGAAAGGGGTTCATGTTCTCGCGGCGGCGGAAGTGATGATGATGACGGCGGAGGTTGCGGTGGTGACGGTGATTCGTCAAGGAAGAAGCTGAGGTTGTCGAAGGAACAGTCAATGTTGTTGGAAGAAACTTTCAAGGAGCATAATACTCTGAATCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGAAGCCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGACTCTAACTGATGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTCTACATGCAAATGAACCCTCCCACCACTCTTACAATGTGCCCTTCATGCGAGCGTGTCGCCGTGTCATCTGCATCGTCCTCATCAGCAGCTGCTGCTGCTCCTCCCTCTGCTTCAGCCAACCCGTCAGGCCCAAGTGTTCAACGGCCAACACCTGTCAACCCTTGGGCGGCAATGTCTATCCAAAATCGTTCCCGACCATGA
Protein sequence

>Msa1308490

MGEKDDEFSLGLSLSLGFGEYANNNNQTPLKATHMHKPPQTVTNQRVSFNNLFHFHDLSTETRSFLRGIDGNTPLPSMAATAAAFDDENGVSSPNSTVSSISGKRSEREGNGDENDAVERGSCSRGGGSDDDDGGGCGGDGDSSRKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAAAPPSASANPSGPSVQRPTPVNPWAAMSIQNRSRP*