AlfalfaGEDB | Msa1308490

M. sativa cultivar zhongmu-4 / Msa1308490

KEGG: K09338
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005911 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04618.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308490	XP_013443795.1	98.366	306	4	1	1	306	1	305	0.0	621

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308490	sp\|P46602\|HAT3_ARATH	59.396	298	93	9	16	303	30	309	1.36e-101	303

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308490	A0A072TWD7	98.366	306	4	1	1	306	1	305	0.0	621

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TFs/TRs:

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Gene ID	Type	Classification
Msa1308490	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308490	MtrunA17_Chr8g0335131	98.366	306	4	1	1	306	1	305	0.0	621
Msa1308490	MtrunA17_Chr5g0399491	58.710	310	95	11	3	304	4	288	6.65e-100	295
Msa1308490	MtrunA17_Chr4g0055851	58.249	297	90	10	1	297	3	265	7.78e-96	284
Msa1308490	MtrunA17_Chr7g0258831	64.706	187	51	4	78	260	98	273	2.83e-70	219
Msa1308490	MtrunA17_Chr1g0175651	70.625	160	28	4	103	262	129	269	1.36e-67	213
Msa1308490	MtrunA17_Chr2g0308611	74.648	142	31	2	129	270	187	323	6.40e-66	210
Msa1308490	MtrunA17_Chr4g0054421	74.809	131	27	2	129	259	115	239	4.66e-64	203
Msa1308490	MtrunA17_Chr5g0400781	65.986	147	44	2	140	281	117	262	2.93e-62	198
Msa1308490	MtrunA17_Chr1g0151971	54.913	173	64	6	91	260	84	245	4.55e-53	175
Msa1308490	MtrunA17_Chr4g0044091	63.710	124	40	1	140	258	59	182	8.13e-50	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308490	AT3G60390.1	59.396	298	93	9	16	303	30	309	1.38e-102	303
Msa1308490	AT5G47370.1	53.674	313	87	13	1	301	3	269	2.01e-89	268
Msa1308490	AT2G44910.1	55.183	328	111	12	1	304	1	316	9.57e-88	265
Msa1308490	AT4G17460.1	52.769	307	98	11	1	299	3	270	2.99e-85	258
Msa1308490	AT4G16780.1	55.082	305	88	9	1	296	2	266	1.15e-83	254
Msa1308490	AT5G06710.1	66.138	189	49	5	90	271	134	314	7.62e-73	228
Msa1308490	AT4G37790.1	60.795	176	59	3	120	295	106	271	1.47e-65	207
Msa1308490	AT2G22800.1	75.833	120	28	1	140	259	107	225	3.78e-61	196
Msa1308490	AT2G01430.1	52.000	175	77	4	109	281	101	270	8.43e-50	167
Msa1308490	AT1G70920.2	56.028	141	48	2	130	270	29	155	3.65e-41	141

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Find 131 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAGTGCAAGAGCTT+AGG	0.411234	8_4:-4766217	Msa1308490:CDS
AAAATGGAACAAGTTATTGA+AGG	0.520682	8_4:+4768774	None:intergenic
AAAGATGATGAATTTAGTTT+GGG	0.373079	8_4:-4768907	Msa1308490:CDS
AAAGGAAGTGCAAGAGCTTA+GGG	0.439484	8_4:-4766216	Msa1308490:CDS
AACACCTGTCAACCCTTGGG+CGG	0.591322	8_4:-4766024	Msa1308490:CDS
AACACTTGGGCCTGACGGGT+TGG	0.484425	8_4:+4766055	None:intergenic
AACCACACCTCCACTTGTCT+TGG	0.434860	8_4:+4767562	None:intergenic
AAGAAGGGAAGGACAGAAAA+TGG	0.263745	8_4:+4769010	None:intergenic
AAGGTATTAAGAAGAAGGGA+AGG	0.624463	8_4:+4768999	None:intergenic
AAGTTTGGAAATGTTAAAGT+AGG	0.470317	8_4:-4765694	Msa1308490:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGGAGAAGAGAAATGAAA+GGG	+	chr8_4:4765712-4765731	None:intergenic	30.0%
ATAAGAAATGGAGGAAAGAT+GGG	+	chr8_4:4765754-4765773	None:intergenic	30.0%
TATAAGAAATGGAGGAAAGA+TGG	+	chr8_4:4765755-4765774	None:intergenic	30.0%
ATGGAGAACAGTATAAGAAA+TGG	+	chr8_4:4765766-4765785	None:intergenic	30.0%
GAAAACACATACCATGAAAA+TGG	+	chr8_4:4766102-4766121	None:intergenic	30.0%
GGGTTATAACAAAAATGAGA+AGG	+	chr8_4:4766330-4766349	None:intergenic	30.0%
ACAGGATAAAAGGCTATATT+TGG	-	chr8_4:4767030-4767049	Msa1308490:intron	30.0%
TAAACATTGTTGTGATGTTG+TGG	-	chr8_4:4767400-4767419	Msa1308490:intron	30.0%
GAGACAATGTTGTAAACATT+CGG	+	chr8_4:4767750-4767769	None:intergenic	30.0%
TAATTAATTCGGATACTTCG+TGG	-	chr8_4:4767888-4767907	Msa1308490:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	4765627	4769252	4765627	ID=Msa1308490;Name=Msa1308490
chr8_4	mRNA	4765627	4769252	4765627	ID=Msa1308490-mRNA-1;Parent=Msa1308490;Name=Msa1308490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=314\|1\|1\|1\|1\|1\|4\|365\|306
chr8_4	exon	4765627	4766322	4765627	ID=Msa1308490-mRNA-1:exon:1428;Parent=Msa1308490-mRNA-1
chr8_4	exon	4767544	4767623	4767544	ID=Msa1308490-mRNA-1:exon:1427;Parent=Msa1308490-mRNA-1
chr8_4	exon	4767916	4768256	4767916	ID=Msa1308490-mRNA-1:exon:1426;Parent=Msa1308490-mRNA-1
chr8_4	exon	4768770	4769252	4768770	ID=Msa1308490-mRNA-1:exon:1425;Parent=Msa1308490-mRNA-1
chr8_4	five_prime_UTR	4768939	4769252	4768939	ID=Msa1308490-mRNA-1:five_prime_utr;Parent=Msa1308490-mRNA-1
chr8_4	CDS	4768770	4768938	4768770	ID=Msa1308490-mRNA-1:cds;Parent=Msa1308490-mRNA-1
chr8_4	CDS	4767916	4768256	4767916	ID=Msa1308490-mRNA-1:cds;Parent=Msa1308490-mRNA-1
chr8_4	CDS	4767544	4767623	4767544	ID=Msa1308490-mRNA-1:cds;Parent=Msa1308490-mRNA-1
chr8_4	CDS	4765992	4766322	4765992	ID=Msa1308490-mRNA-1:cds;Parent=Msa1308490-mRNA-1
chr8_4	three_prime_UTR	4765627	4765991	4765627	ID=Msa1308490-mRNA-1:three_prime_utr;Parent=Msa1308490-mRNA-1

Gene Sequence

>Msa1308490

ATGGGTGAGAAAGATGATGAATTTAGTTTGGGTTTAAGCTTGAGTTTAGGATTTGGAGAATATGCAAATAACAACAACCAAACTCCTTTGAAGGCGACTCACATGCACAAGCCTCCTCAAACGGTTACAAACCAAAGGGTTTCCTTCAATAACTTGTTCCATTTTCATGATCTAAGCACAGAAACGAGGTCATTTCTTCGCGGAATAGACGGCAACACTCCACTACCATCCATGGCGGCGACGGCCGCCGCATTCGACGATGAAAACGGAGTTTCATCACCGAACAGCACCGTGTCAAGCATCAGTGGAAAGAGAAGCGAAAGAGAAGGAAACGGAGATGAAAACGACGCCGTCGAAAGGGGTTCATGTTCTCGCGGCGGCGGAAGTGATGATGATGACGGCGGAGGTTGCGGTGGTGACGGTGATTCGTCAAGGAAGAAGCTGAGGTTGTCGAAGGAACAGTCAATGTTGTTGGAAGAAACTTTCAAGGAGCATAATACTCTGAATCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGAAGCCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGACTCTAACTGATGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTCTACATGCAAATGAACCCTCCCACCACTCTTACAATGTGCCCTTCATGCGAGCGTGTCGCCGTGTCATCTGCATCGTCCTCATCAGCAGCTGCTGCTGCTCCTCCCTCTGCTTCAGCCAACCCGTCAGGCCCAAGTGTTCAACGGCCAACACCTGTCAACCCTTGGGCGGCAATGTCTATCCAAAATCGTTCCCGACCATGA

Protein sequence

>Msa1308490

MGEKDDEFSLGLSLSLGFGEYANNNNQTPLKATHMHKPPQTVTNQRVSFNNLFHFHDLSTETRSFLRGIDGNTPLPSMAATAAAFDDENGVSSPNSTVSSISGKRSEREGNGDENDAVERGSCSRGGGSDDDDGGGCGGDGDSSRKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAAAPPSASANPSGPSVQRPTPVNPWAAMSIQNRSRP*