Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309000 | KAE9607265.1 | 60.274 | 73 | 29 | 0 | 12 | 84 | 59 | 131 | 7.76e-19 | 95.5 |
| Msa1309000 | KAE9607265.1 | 72.662 | 139 | 38 | 0 | 78 | 216 | 289 | 427 | 2.72e-65 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309000 | sp|Q9SZL8|FRS5_ARATH | 36.111 | 144 | 88 | 2 | 73 | 215 | 331 | 471 | 5.48e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309000 | A0A6A4PZP9 | 60.274 | 73 | 29 | 0 | 12 | 84 | 59 | 131 | 3.71e-19 | 95.5 |
| Msa1309000 | A0A6A4PZP9 | 72.662 | 139 | 38 | 0 | 78 | 216 | 289 | 427 | 1.30e-65 | 218 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1309000 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309000 | MtrunA17_Chr1g0164591 | 52.500 | 120 | 57 | 0 | 78 | 197 | 173 | 292 | 1.13e-39 | 138 |
| Msa1309000 | MtrunA17_Chr3g0082121 | 52.137 | 117 | 56 | 0 | 78 | 194 | 293 | 409 | 1.90e-37 | 137 |
| Msa1309000 | MtrunA17_Chr6g0458391 | 44.538 | 119 | 66 | 0 | 78 | 196 | 465 | 583 | 5.59e-35 | 130 |
| Msa1309000 | MtrunA17_Chr6g0458391 | 50.704 | 71 | 32 | 2 | 12 | 80 | 236 | 305 | 5.45e-14 | 70.5 |
| Msa1309000 | MtrunA17_Chr1g0203721 | 45.082 | 122 | 67 | 0 | 76 | 197 | 321 | 442 | 8.59e-33 | 124 |
| Msa1309000 | MtrunA17_Chr1g0203721 | 49.296 | 71 | 33 | 2 | 12 | 80 | 74 | 143 | 6.41e-15 | 73.2 |
| Msa1309000 | MtrunA17_Chr1g0149131 | 50.505 | 99 | 49 | 0 | 99 | 197 | 1 | 99 | 3.90e-32 | 113 |
| Msa1309000 | MtrunA17_Chr2g0324011 | 43.333 | 120 | 68 | 0 | 78 | 197 | 267 | 386 | 1.35e-31 | 120 |
| Msa1309000 | MtrunA17_Chr1g0203051 | 40.833 | 120 | 66 | 1 | 78 | 197 | 337 | 451 | 3.03e-27 | 108 |
| Msa1309000 | MtrunA17_Chr5g0448761 | 37.226 | 137 | 82 | 2 | 73 | 208 | 322 | 455 | 2.04e-26 | 106 |
| Msa1309000 | MtrunA17_Chr3g0080351 | 36.719 | 128 | 78 | 1 | 70 | 197 | 318 | 442 | 1.73e-25 | 103 |
| Msa1309000 | MtrunA17_Chr2g0287061 | 36.364 | 132 | 78 | 3 | 67 | 198 | 397 | 522 | 1.05e-24 | 101 |
| Msa1309000 | MtrunA17_Chr8g0363841 | 36.434 | 129 | 78 | 2 | 68 | 196 | 268 | 392 | 1.18e-24 | 101 |
| Msa1309000 | MtrunA17_Chr5g0448511 | 34.127 | 126 | 80 | 1 | 73 | 198 | 94 | 216 | 2.40e-24 | 100 |
| Msa1309000 | MtrunA17_Chr1g0202341 | 33.846 | 130 | 83 | 1 | 67 | 196 | 300 | 426 | 4.39e-24 | 99.8 |
| Msa1309000 | MtrunA17_Chr3g0118611 | 38.710 | 124 | 73 | 1 | 73 | 196 | 200 | 320 | 1.28e-23 | 98.2 |
| Msa1309000 | MtrunA17_Chr6g0477261 | 40.157 | 127 | 66 | 3 | 73 | 196 | 137 | 256 | 3.50e-22 | 94.0 |
| Msa1309000 | MtrunA17_Chr2g0296781 | 40.157 | 127 | 66 | 4 | 73 | 196 | 248 | 367 | 4.31e-22 | 94.0 |
| Msa1309000 | MtrunA17_Chr5g0440451 | 35.484 | 124 | 77 | 1 | 73 | 196 | 303 | 423 | 1.63e-20 | 89.4 |
| Msa1309000 | MtrunA17_Chr5g0441581 | 36.290 | 124 | 75 | 2 | 73 | 196 | 276 | 395 | 5.80e-20 | 87.8 |
| Msa1309000 | MtrunA17_Chr2g0287651 | 37.500 | 112 | 65 | 1 | 78 | 189 | 335 | 441 | 3.10e-19 | 85.5 |
| Msa1309000 | MtrunA17_Chr1g0207551 | 33.571 | 140 | 89 | 2 | 70 | 208 | 284 | 420 | 7.00e-19 | 84.7 |
| Msa1309000 | MtrunA17_Chr2g0329031 | 35.484 | 124 | 77 | 1 | 73 | 196 | 260 | 380 | 1.26e-18 | 84.0 |
| Msa1309000 | MtrunA17_Chr1g0196541 | 32.283 | 127 | 82 | 2 | 70 | 196 | 245 | 367 | 8.38e-18 | 81.3 |
| Msa1309000 | MtrunA17_Chr5g0431001 | 34.058 | 138 | 85 | 4 | 73 | 208 | 327 | 460 | 1.21e-14 | 72.0 |
| Msa1309000 | MtrunA17_Chr2g0294841 | 33.600 | 125 | 79 | 3 | 74 | 196 | 307 | 429 | 1.71e-14 | 71.6 |
| Msa1309000 | MtrunA17_Chr2g0291591 | 31.429 | 140 | 91 | 3 | 73 | 211 | 315 | 450 | 1.20e-13 | 69.3 |
| Msa1309000 | MtrunA17_Chr1g0198761 | 34.058 | 138 | 85 | 4 | 73 | 208 | 313 | 446 | 8.36e-13 | 67.0 |
| Msa1309000 | MtrunA17_Chr2g0276841 | 32.540 | 126 | 80 | 3 | 73 | 197 | 331 | 452 | 8.68e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309000 | AT4G38180.1 | 36.111 | 144 | 88 | 2 | 73 | 215 | 331 | 471 | 5.57e-25 | 102 |
| Msa1309000 | AT3G06250.2 | 36.667 | 120 | 73 | 2 | 78 | 197 | 409 | 525 | 1.55e-23 | 98.6 |
| Msa1309000 | AT3G06250.1 | 36.667 | 120 | 73 | 2 | 78 | 197 | 409 | 525 | 1.55e-23 | 98.6 |
| Msa1309000 | AT3G06250.3 | 36.667 | 120 | 73 | 2 | 78 | 197 | 409 | 525 | 1.55e-23 | 98.6 |
| Msa1309000 | AT5G18960.2 | 33.333 | 132 | 82 | 2 | 67 | 198 | 425 | 550 | 1.15e-22 | 95.9 |
| Msa1309000 | AT5G18960.1 | 33.333 | 132 | 82 | 2 | 67 | 198 | 425 | 550 | 1.15e-22 | 95.9 |
| Msa1309000 | AT3G22170.2 | 32.117 | 137 | 89 | 2 | 73 | 208 | 316 | 449 | 6.71e-22 | 93.6 |
| Msa1309000 | AT3G22170.1 | 32.117 | 137 | 89 | 2 | 73 | 208 | 316 | 449 | 6.71e-22 | 93.6 |
| Msa1309000 | AT1G80010.1 | 33.333 | 144 | 91 | 3 | 70 | 212 | 350 | 489 | 8.41e-20 | 87.8 |
| Msa1309000 | AT2G27110.3 | 33.571 | 140 | 89 | 2 | 73 | 211 | 133 | 269 | 3.40e-19 | 85.9 |
| Msa1309000 | AT2G27110.2 | 33.571 | 140 | 89 | 2 | 73 | 211 | 278 | 414 | 4.68e-19 | 85.5 |
| Msa1309000 | AT2G27110.1 | 33.571 | 140 | 89 | 2 | 73 | 211 | 278 | 414 | 4.68e-19 | 85.5 |
| Msa1309000 | AT4G15090.1 | 34.188 | 117 | 74 | 1 | 73 | 189 | 307 | 420 | 1.61e-18 | 84.0 |
| Msa1309000 | AT4G15090.5 | 34.188 | 117 | 74 | 1 | 73 | 189 | 307 | 420 | 1.61e-18 | 84.0 |
| Msa1309000 | AT4G15090.3 | 34.188 | 117 | 74 | 1 | 73 | 189 | 307 | 420 | 1.61e-18 | 84.0 |
| Msa1309000 | AT4G15090.2 | 34.188 | 117 | 74 | 1 | 73 | 189 | 307 | 420 | 1.61e-18 | 84.0 |
| Msa1309000 | AT4G15090.4 | 34.188 | 117 | 74 | 1 | 73 | 189 | 307 | 420 | 1.61e-18 | 84.0 |
| Msa1309000 | AT2G32250.8 | 29.771 | 131 | 89 | 1 | 67 | 197 | 204 | 331 | 2.57e-18 | 83.2 |
| Msa1309000 | AT2G32250.5 | 29.771 | 131 | 89 | 1 | 67 | 197 | 245 | 372 | 2.64e-18 | 83.2 |
| Msa1309000 | AT2G32250.7 | 29.771 | 131 | 89 | 1 | 67 | 197 | 204 | 331 | 2.70e-18 | 83.2 |
| Msa1309000 | AT2G32250.2 | 29.771 | 131 | 89 | 1 | 67 | 197 | 245 | 372 | 3.00e-18 | 83.2 |
| Msa1309000 | AT2G32250.4 | 29.771 | 131 | 89 | 1 | 67 | 197 | 245 | 372 | 3.00e-18 | 83.2 |
| Msa1309000 | AT2G32250.6 | 29.771 | 131 | 89 | 1 | 67 | 197 | 245 | 372 | 3.09e-18 | 83.2 |
| Msa1309000 | AT2G32250.1 | 29.771 | 131 | 89 | 1 | 67 | 197 | 245 | 372 | 3.09e-18 | 83.2 |
| Msa1309000 | AT2G32250.3 | 29.771 | 131 | 89 | 1 | 67 | 197 | 245 | 372 | 3.09e-18 | 83.2 |
| Msa1309000 | AT1G76320.3 | 36.800 | 125 | 76 | 1 | 73 | 197 | 244 | 365 | 3.57e-18 | 82.8 |
| Msa1309000 | AT1G76320.2 | 36.800 | 125 | 76 | 1 | 73 | 197 | 244 | 365 | 5.88e-18 | 82.4 |
| Msa1309000 | AT1G76320.1 | 36.800 | 125 | 76 | 1 | 73 | 197 | 244 | 365 | 6.06e-18 | 82.4 |
| Msa1309000 | AT1G76320.4 | 36.800 | 125 | 76 | 1 | 73 | 197 | 244 | 365 | 6.06e-18 | 82.4 |
| Msa1309000 | AT4G19990.1 | 31.897 | 116 | 79 | 0 | 82 | 197 | 204 | 319 | 2.04e-17 | 80.9 |
| Msa1309000 | AT4G19990.5 | 31.897 | 116 | 79 | 0 | 82 | 197 | 261 | 376 | 2.29e-17 | 80.5 |
| Msa1309000 | AT4G19990.3 | 31.897 | 116 | 79 | 0 | 82 | 197 | 261 | 376 | 2.47e-17 | 80.5 |
| Msa1309000 | AT4G19990.4 | 31.897 | 116 | 79 | 0 | 82 | 197 | 261 | 376 | 2.47e-17 | 80.5 |
| Msa1309000 | AT4G19990.7 | 31.897 | 116 | 79 | 0 | 82 | 197 | 275 | 390 | 2.63e-17 | 80.5 |
| Msa1309000 | AT4G19990.6 | 31.897 | 116 | 79 | 0 | 82 | 197 | 261 | 376 | 3.19e-17 | 80.1 |
| Msa1309000 | AT4G19990.2 | 31.897 | 116 | 79 | 0 | 82 | 197 | 261 | 376 | 3.19e-17 | 80.1 |
| Msa1309000 | AT4G38170.1 | 29.197 | 137 | 93 | 2 | 73 | 208 | 96 | 229 | 6.15e-17 | 79.3 |
| Msa1309000 | AT1G52520.1 | 25.342 | 146 | 106 | 3 | 71 | 215 | 324 | 467 | 6.52e-11 | 61.6 |
Find 22 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTTGCATCCATTTATTT+TGG | 0.162980 | 8_4:-5398826 | None:intergenic |
| GAGTTGCAAAGTTGCATTTA+TGG | 0.171824 | 8_4:+5398740 | Msa1309000:CDS |
| GGAATTGCCTTTGCCATTGC+AGG | 0.215091 | 8_4:-5398611 | None:intergenic |
| ATAATCTTCGCCAAAATAAA+TGG | 0.309322 | 8_4:+5398816 | Msa1309000:CDS |
| AATATTTACGCAGGCTTTGT+TGG | 0.382142 | 8_4:+5398109 | Msa1309000:CDS |
| TGAAGATCATATATGCATAT+AGG | 0.455467 | 8_4:+5398080 | Msa1309000:CDS |
| AGAACTGGTTGTTCAGCATA+TGG | 0.459557 | 8_4:+5398268 | Msa1309000:CDS |
| CATTTATGGTTTCGAGTATG+AGG | 0.463305 | 8_4:+5398754 | Msa1309000:CDS |
| TAATTGTGTTGTTGTAGCAC+TGG | 0.475569 | 8_4:-5398902 | None:intergenic |
| CATATCATCGTTTATGCTTG+TGG | 0.499690 | 8_4:+5398651 | Msa1309000:CDS |
| TGATCTGTTAAAATTGTCAT+CGG | 0.512471 | 8_4:-5398584 | None:intergenic |
| ACTCGCAAAGATATCAGAAC+TGG | 0.524113 | 8_4:+5398253 | Msa1309000:CDS |
| AAGAGAATAAAAGATGAAGA+AGG | 0.531444 | 8_4:+5398223 | Msa1309000:CDS |
| TATAGTCCCAAATGTTGGTA+TGG | 0.538303 | 8_4:+5398047 | None:intergenic |
| TCAAGATCCTGCAATGGCAA+AGG | 0.589517 | 8_4:+5398604 | Msa1309000:CDS |
| CATAAACGATGATATGACTC+GGG | 0.591415 | 8_4:-5398644 | None:intergenic |
| AACAGATCAAGATCCTGCAA+TGG | 0.602312 | 8_4:+5398598 | Msa1309000:CDS |
| GCATAAACGATGATATGACT+CGG | 0.604014 | 8_4:-5398645 | None:intergenic |
| AAAATAATTAGATCGCTGAA+AGG | 0.605255 | 8_4:-5398711 | None:intergenic |
| AAACAAAAGTAAATTATACA+AGG | 0.614847 | 8_4:+5398156 | Msa1309000:CDS |
| AGACAGCTGAATCATTTGAG+TGG | 0.678572 | 8_4:+5398522 | Msa1309000:CDS |
| AATGGCAAAGGCAATTCCAG+AGG | 0.688167 | 8_4:+5398616 | Msa1309000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAGTAAATTATACA+AGG | + | chr8_4:5398156-5398175 | Msa1309000:CDS | 15.0% |
| !!! | TTCTTTAAAAAAAGGAAAAA+TGG | + | chr8_4:5398848-5398867 | Msa1309000:CDS | 15.0% |
| !!! | TCTTTAAAAAAAGGAAAAAT+GGG | + | chr8_4:5398849-5398868 | Msa1309000:CDS | 15.0% |
| !! | AAACAAAAGTAAATTATACA+AGG | + | chr8_4:5398156-5398175 | Msa1309000:CDS | 15.0% |
| !!! | TTCTTTAAAAAAAGGAAAAA+TGG | + | chr8_4:5398848-5398867 | Msa1309000:CDS | 15.0% |
| !!! | TCTTTAAAAAAAGGAAAAAT+GGG | + | chr8_4:5398849-5398868 | Msa1309000:CDS | 15.0% |
| !!! | AAATTTTCTTGTTTTGAAGA+AGG | + | chr8_4:5398196-5398215 | Msa1309000:CDS | 20.0% |
| !!! | TGCAAGATTTCTTTAAAAAA+AGG | + | chr8_4:5398840-5398859 | Msa1309000:CDS | 20.0% |
| !!! | AAATTTTCTTGTTTTGAAGA+AGG | + | chr8_4:5398196-5398215 | Msa1309000:CDS | 20.0% |
| !!! | TGCAAGATTTCTTTAAAAAA+AGG | + | chr8_4:5398840-5398859 | Msa1309000:CDS | 20.0% |
| ! | TGAAGATCATATATGCATAT+AGG | + | chr8_4:5398080-5398099 | Msa1309000:CDS | 25.0% |
| !!! | AGGTTTTATAATATTTACGC+AGG | + | chr8_4:5398100-5398119 | Msa1309000:CDS | 25.0% |
| !!! | GTTTTAGCATTAGAAAAGAT+TGG | + | chr8_4:5398131-5398150 | Msa1309000:CDS | 25.0% |
| ! | AAGAGAATAAAAGATGAAGA+AGG | + | chr8_4:5398223-5398242 | Msa1309000:CDS | 25.0% |
| ! | TGATGATTAAATCCAACAAA+CGG | - | chr8_4:5398461-5398480 | None:intergenic | 25.0% |
| ! | TGATCTGTTAAAATTGTCAT+CGG | - | chr8_4:5398587-5398606 | None:intergenic | 25.0% |
| ! | AAAATAATTAGATCGCTGAA+AGG | - | chr8_4:5398714-5398733 | None:intergenic | 25.0% |
| ! | ATAATCTTCGCCAAAATAAA+TGG | + | chr8_4:5398816-5398835 | Msa1309000:CDS | 25.0% |
| !! | AATCTTGCATCCATTTATTT+TGG | - | chr8_4:5398829-5398848 | None:intergenic | 25.0% |
| ! | TGAAGATCATATATGCATAT+AGG | + | chr8_4:5398080-5398099 | Msa1309000:CDS | 25.0% |
| !!! | AGGTTTTATAATATTTACGC+AGG | + | chr8_4:5398100-5398119 | Msa1309000:CDS | 25.0% |
| !!! | GTTTTAGCATTAGAAAAGAT+TGG | + | chr8_4:5398131-5398150 | Msa1309000:CDS | 25.0% |
| ! | AAGAGAATAAAAGATGAAGA+AGG | + | chr8_4:5398223-5398242 | Msa1309000:CDS | 25.0% |
| ! | TGATGATTAAATCCAACAAA+CGG | - | chr8_4:5398461-5398480 | None:intergenic | 25.0% |
| ! | TGATCTGTTAAAATTGTCAT+CGG | - | chr8_4:5398587-5398606 | None:intergenic | 25.0% |
| ! | AAAATAATTAGATCGCTGAA+AGG | - | chr8_4:5398714-5398733 | None:intergenic | 25.0% |
| ! | ATAATCTTCGCCAAAATAAA+TGG | + | chr8_4:5398816-5398835 | Msa1309000:CDS | 25.0% |
| !! | AATCTTGCATCCATTTATTT+TGG | - | chr8_4:5398829-5398848 | None:intergenic | 25.0% |
| AGAATCGAATGGAAAATATG+TGG | + | chr8_4:5398301-5398320 | Msa1309000:intron | 30.0% | |
| ! | TTTTAGCAAGTTCATGGTTT+TGG | - | chr8_4:5398346-5398365 | None:intergenic | 30.0% |
| !! | AAACCATGAACTTGCTAAAA+TGG | + | chr8_4:5398346-5398365 | Msa1309000:intron | 30.0% |
| !! | TGGATTATGCTAGCTTATTT+TGG | + | chr8_4:5398372-5398391 | Msa1309000:intron | 30.0% |
| ! | ACTTTTCTTAAAGCTATGTG+TGG | + | chr8_4:5398554-5398573 | Msa1309000:CDS | 30.0% |
| ! | AAAAAAGGAAAAATGGGCTT+CGG | + | chr8_4:5398855-5398874 | Msa1309000:CDS | 30.0% |
| AGAATCGAATGGAAAATATG+TGG | + | chr8_4:5398301-5398320 | Msa1309000:intron | 30.0% | |
| ! | TTTTAGCAAGTTCATGGTTT+TGG | - | chr8_4:5398346-5398365 | None:intergenic | 30.0% |
| !! | AAACCATGAACTTGCTAAAA+TGG | + | chr8_4:5398346-5398365 | Msa1309000:intron | 30.0% |
| !! | TGGATTATGCTAGCTTATTT+TGG | + | chr8_4:5398372-5398391 | Msa1309000:intron | 30.0% |
| ! | ACTTTTCTTAAAGCTATGTG+TGG | + | chr8_4:5398554-5398573 | Msa1309000:CDS | 30.0% |
| ! | AAAAAAGGAAAAATGGGCTT+CGG | + | chr8_4:5398855-5398874 | Msa1309000:CDS | 30.0% |
| ! | AATATTTACGCAGGCTTTGT+TGG | + | chr8_4:5398109-5398128 | Msa1309000:CDS | 35.0% |
| !! | CAACCATTTTAGCAAGTTCA+TGG | - | chr8_4:5398352-5398371 | None:intergenic | 35.0% |
| !! | TGAACTTGCTAAAATGGTTG+TGG | + | chr8_4:5398352-5398371 | Msa1309000:intron | 35.0% |
| ! | CATCGAGAAAGTGTGTTATT+TGG | + | chr8_4:5398479-5398498 | Msa1309000:intron | 35.0% |
| CATAAACGATGATATGACTC+GGG | - | chr8_4:5398647-5398666 | None:intergenic | 35.0% | |
| GCATAAACGATGATATGACT+CGG | - | chr8_4:5398648-5398667 | None:intergenic | 35.0% | |
| CATATCATCGTTTATGCTTG+TGG | + | chr8_4:5398651-5398670 | Msa1309000:CDS | 35.0% | |
| GAGTTGCAAAGTTGCATTTA+TGG | + | chr8_4:5398740-5398759 | Msa1309000:CDS | 35.0% | |
| ! | CATTTATGGTTTCGAGTATG+AGG | + | chr8_4:5398754-5398773 | Msa1309000:CDS | 35.0% |
| ! | AGGATGATTTTCTGAATGCT+TGG | + | chr8_4:5398774-5398793 | Msa1309000:CDS | 35.0% |
| ! | GGATGATTTTCTGAATGCTT+GGG | + | chr8_4:5398775-5398794 | Msa1309000:CDS | 35.0% |
| ! | AAAAATGGGCTTCGGTATAT+GGG | + | chr8_4:5398863-5398882 | Msa1309000:CDS | 35.0% |
| ! | TAATTGTGTTGTTGTAGCAC+TGG | - | chr8_4:5398905-5398924 | None:intergenic | 35.0% |
| ! | AATATTTACGCAGGCTTTGT+TGG | + | chr8_4:5398109-5398128 | Msa1309000:CDS | 35.0% |
| !! | CAACCATTTTAGCAAGTTCA+TGG | - | chr8_4:5398352-5398371 | None:intergenic | 35.0% |
| !! | TGAACTTGCTAAAATGGTTG+TGG | + | chr8_4:5398352-5398371 | Msa1309000:intron | 35.0% |
| ! | CATCGAGAAAGTGTGTTATT+TGG | + | chr8_4:5398479-5398498 | Msa1309000:intron | 35.0% |
| CATAAACGATGATATGACTC+GGG | - | chr8_4:5398647-5398666 | None:intergenic | 35.0% | |
| GCATAAACGATGATATGACT+CGG | - | chr8_4:5398648-5398667 | None:intergenic | 35.0% | |
| CATATCATCGTTTATGCTTG+TGG | + | chr8_4:5398651-5398670 | Msa1309000:CDS | 35.0% | |
| GAGTTGCAAAGTTGCATTTA+TGG | + | chr8_4:5398740-5398759 | Msa1309000:CDS | 35.0% | |
| ! | CATTTATGGTTTCGAGTATG+AGG | + | chr8_4:5398754-5398773 | Msa1309000:CDS | 35.0% |
| ! | AGGATGATTTTCTGAATGCT+TGG | + | chr8_4:5398774-5398793 | Msa1309000:CDS | 35.0% |
| ! | GGATGATTTTCTGAATGCTT+GGG | + | chr8_4:5398775-5398794 | Msa1309000:CDS | 35.0% |
| ! | AAAAATGGGCTTCGGTATAT+GGG | + | chr8_4:5398863-5398882 | Msa1309000:CDS | 35.0% |
| ! | TAATTGTGTTGTTGTAGCAC+TGG | - | chr8_4:5398905-5398924 | None:intergenic | 35.0% |
| ACTCGCAAAGATATCAGAAC+TGG | + | chr8_4:5398253-5398272 | Msa1309000:CDS | 40.0% | |
| AGAACTGGTTGTTCAGCATA+TGG | + | chr8_4:5398268-5398287 | Msa1309000:CDS | 40.0% | |
| GTTGTTCAGCATATGGTCAT+TGG | + | chr8_4:5398275-5398294 | Msa1309000:intron | 40.0% | |
| !!! | GCTAGCTTATTTTGGAGATG+TGG | + | chr8_4:5398380-5398399 | Msa1309000:intron | 40.0% |
| TATTAGTGCGATGCGATAAG+TGG | - | chr8_4:5398418-5398437 | None:intergenic | 40.0% | |
| AATCCAACAAACGGAGCAAA+TGG | - | chr8_4:5398452-5398471 | None:intergenic | 40.0% | |
| AGACAGCTGAATCATTTGAG+TGG | + | chr8_4:5398522-5398541 | Msa1309000:CDS | 40.0% | |
| AACAGATCAAGATCCTGCAA+TGG | + | chr8_4:5398598-5398617 | Msa1309000:CDS | 40.0% | |
| ! | GAAAAATGGGCTTCGGTATA+TGG | + | chr8_4:5398862-5398881 | Msa1309000:CDS | 40.0% |
| ACTCGCAAAGATATCAGAAC+TGG | + | chr8_4:5398253-5398272 | Msa1309000:CDS | 40.0% | |
| AGAACTGGTTGTTCAGCATA+TGG | + | chr8_4:5398268-5398287 | Msa1309000:CDS | 40.0% | |
| GTTGTTCAGCATATGGTCAT+TGG | + | chr8_4:5398275-5398294 | Msa1309000:intron | 40.0% | |
| !!! | GCTAGCTTATTTTGGAGATG+TGG | + | chr8_4:5398380-5398399 | Msa1309000:intron | 40.0% |
| TATTAGTGCGATGCGATAAG+TGG | - | chr8_4:5398418-5398437 | None:intergenic | 40.0% | |
| AATCCAACAAACGGAGCAAA+TGG | - | chr8_4:5398452-5398471 | None:intergenic | 40.0% | |
| AGACAGCTGAATCATTTGAG+TGG | + | chr8_4:5398522-5398541 | Msa1309000:CDS | 40.0% | |
| AACAGATCAAGATCCTGCAA+TGG | + | chr8_4:5398598-5398617 | Msa1309000:CDS | 40.0% | |
| ! | GAAAAATGGGCTTCGGTATA+TGG | + | chr8_4:5398862-5398881 | Msa1309000:CDS | 40.0% |
| GTCATTGGTCGAGAATCGAA+TGG | + | chr8_4:5398290-5398309 | Msa1309000:intron | 45.0% | |
| CAACCATTTGCTCCGTTTGT+TGG | + | chr8_4:5398446-5398465 | Msa1309000:intron | 45.0% | |
| TCAAGATCCTGCAATGGCAA+AGG | + | chr8_4:5398604-5398623 | Msa1309000:CDS | 45.0% | |
| AATGGCAAAGGCAATTCCAG+AGG | + | chr8_4:5398616-5398635 | Msa1309000:CDS | 45.0% | |
| ! | TATGACTCGGGAAAAACCTC+TGG | - | chr8_4:5398635-5398654 | None:intergenic | 45.0% |
| GTCATTGGTCGAGAATCGAA+TGG | + | chr8_4:5398290-5398309 | Msa1309000:intron | 45.0% | |
| CAACCATTTGCTCCGTTTGT+TGG | + | chr8_4:5398446-5398465 | Msa1309000:intron | 45.0% | |
| TCAAGATCCTGCAATGGCAA+AGG | + | chr8_4:5398604-5398623 | Msa1309000:CDS | 45.0% | |
| AATGGCAAAGGCAATTCCAG+AGG | + | chr8_4:5398616-5398635 | Msa1309000:CDS | 45.0% | |
| ! | TATGACTCGGGAAAAACCTC+TGG | - | chr8_4:5398635-5398654 | None:intergenic | 45.0% |
| GGAATTGCCTTTGCCATTGC+AGG | - | chr8_4:5398614-5398633 | None:intergenic | 50.0% | |
| GGAATTGCCTTTGCCATTGC+AGG | - | chr8_4:5398614-5398633 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 5398058 | 5398925 | 5398058 | ID=Msa1309000;Name=Msa1309000 |
| chr8_4 | mRNA | 5398058 | 5398925 | 5398058 | ID=Msa1309000-mRNA-1;Parent=Msa1309000;Name=Msa1309000-mRNA-1;_AED=0.35;_eAED=0.37;_QI=0|0|0|0.5|1|1|2|0|216 |
| chr8_4 | exon | 5398058 | 5398289 | 5398058 | ID=Msa1309000-mRNA-1:exon:1739;Parent=Msa1309000-mRNA-1 |
| chr8_4 | exon | 5398507 | 5398925 | 5398507 | ID=Msa1309000-mRNA-1:exon:1740;Parent=Msa1309000-mRNA-1 |
| chr8_4 | CDS | 5398058 | 5398289 | 5398058 | ID=Msa1309000-mRNA-1:cds;Parent=Msa1309000-mRNA-1 |
| chr8_4 | CDS | 5398507 | 5398925 | 5398507 | ID=Msa1309000-mRNA-1:cds;Parent=Msa1309000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
