Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313590 | sp|Q9LRW1|LBD22_ARATH | 73.276 | 116 | 31 | 0 | 11 | 126 | 35 | 150 | 3.79e-55 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313590 | G7LHF8 | 92.667 | 300 | 17 | 2 | 9 | 308 | 9 | 303 | 2.70e-180 | 509 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1313590 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313590 | MtrunA17_Chr8g0342351 | 94.208 | 259 | 10 | 2 | 1 | 259 | 1 | 254 | 0.0 | 499 |
| Msa1313590 | MtrunA17_Chr2g0330201 | 43.382 | 272 | 113 | 8 | 9 | 256 | 16 | 270 | 5.48e-52 | 173 |
| Msa1313590 | MtrunA17_Chr4g0059901 | 58.333 | 108 | 45 | 0 | 9 | 116 | 7 | 114 | 5.46e-36 | 130 |
| Msa1313590 | MtrunA17_Chr6g0452671 | 53.774 | 106 | 49 | 0 | 3 | 108 | 2 | 107 | 1.29e-34 | 125 |
| Msa1313590 | MtrunA17_Chr6g0452661 | 44.025 | 159 | 81 | 3 | 11 | 161 | 8 | 166 | 3.50e-31 | 117 |
| Msa1313590 | MtrunA17_Chr4g0055441 | 52.885 | 104 | 48 | 1 | 11 | 113 | 1 | 104 | 3.30e-30 | 112 |
| Msa1313590 | MtrunA17_Chr6g0452691 | 47.863 | 117 | 60 | 1 | 9 | 124 | 6 | 122 | 6.52e-29 | 109 |
| Msa1313590 | MtrunA17_Chr5g0439111 | 49.558 | 113 | 56 | 1 | 11 | 122 | 8 | 120 | 3.17e-27 | 106 |
| Msa1313590 | MtrunA17_Chr7g0227511 | 42.308 | 104 | 60 | 0 | 9 | 112 | 8 | 111 | 5.31e-26 | 101 |
| Msa1313590 | MtrunA17_Chr3g0117121 | 43.689 | 103 | 58 | 0 | 13 | 115 | 11 | 113 | 9.69e-26 | 101 |
| Msa1313590 | MtrunA17_Chr4g0058651 | 43.000 | 100 | 57 | 0 | 13 | 112 | 12 | 111 | 4.23e-25 | 99.4 |
| Msa1313590 | MtrunA17_Chr4g0040831 | 40.476 | 126 | 64 | 2 | 5 | 128 | 8 | 124 | 4.32e-25 | 99.8 |
| Msa1313590 | MtrunA17_Chr3g0114061 | 34.884 | 129 | 84 | 0 | 6 | 134 | 2 | 130 | 1.88e-24 | 97.1 |
| Msa1313590 | MtrunA17_Chr2g0311601 | 36.975 | 119 | 70 | 1 | 8 | 121 | 9 | 127 | 4.52e-24 | 95.9 |
| Msa1313590 | MtrunA17_Chr4g0043421 | 39.423 | 104 | 63 | 0 | 13 | 116 | 16 | 119 | 5.27e-24 | 96.3 |
| Msa1313590 | MtrunA17_Chr6g0449641 | 41.346 | 104 | 61 | 0 | 9 | 112 | 6 | 109 | 9.15e-24 | 94.7 |
| Msa1313590 | MtrunA17_Chr8g0353981 | 40.187 | 107 | 64 | 0 | 13 | 119 | 8 | 114 | 1.81e-23 | 96.3 |
| Msa1313590 | MtrunA17_Chr6g0449651 | 41.748 | 103 | 60 | 0 | 13 | 115 | 68 | 170 | 2.04e-23 | 95.5 |
| Msa1313590 | MtrunA17_Chr3g0106101 | 36.719 | 128 | 79 | 1 | 10 | 137 | 5 | 130 | 3.02e-23 | 94.4 |
| Msa1313590 | MtrunA17_Chr3g0115431 | 37.736 | 106 | 66 | 0 | 10 | 115 | 7 | 112 | 3.85e-23 | 95.1 |
| Msa1313590 | MtrunA17_Chr5g0402611 | 36.364 | 110 | 70 | 0 | 6 | 115 | 2 | 111 | 5.58e-23 | 96.7 |
| Msa1313590 | MtrunA17_Chr7g0225111 | 38.532 | 109 | 67 | 0 | 13 | 121 | 6 | 114 | 2.42e-22 | 90.1 |
| Msa1313590 | MtrunA17_Chr8g0374591 | 37.143 | 105 | 66 | 0 | 11 | 115 | 7 | 111 | 3.78e-22 | 89.7 |
| Msa1313590 | MtrunA17_Chr7g0260971 | 39.823 | 113 | 67 | 1 | 2 | 113 | 4 | 116 | 7.78e-22 | 91.7 |
| Msa1313590 | MtrunA17_Chr5g0444351 | 38.532 | 109 | 67 | 0 | 13 | 121 | 6 | 114 | 1.27e-21 | 89.0 |
| Msa1313590 | MtrunA17_Chr3g0097221 | 35.043 | 117 | 76 | 0 | 7 | 123 | 2 | 118 | 1.75e-21 | 92.0 |
| Msa1313590 | MtrunA17_Chr5g0437571 | 34.862 | 109 | 71 | 0 | 13 | 121 | 7 | 115 | 3.83e-21 | 88.2 |
| Msa1313590 | MtrunA17_Chr5g0438091 | 38.679 | 106 | 63 | 2 | 8 | 112 | 35 | 139 | 4.11e-21 | 89.0 |
| Msa1313590 | MtrunA17_Chr3g0129071 | 37.273 | 110 | 67 | 2 | 8 | 116 | 43 | 151 | 8.78e-21 | 89.0 |
| Msa1313590 | MtrunA17_Chr5g0437401 | 36.190 | 105 | 67 | 0 | 9 | 113 | 8 | 112 | 2.09e-20 | 86.7 |
| Msa1313590 | MtrunA17_Chr8g0374601 | 37.864 | 103 | 64 | 0 | 11 | 113 | 25 | 127 | 3.77e-20 | 88.2 |
| Msa1313590 | MtrunA17_Chr4g0030001 | 36.429 | 140 | 72 | 4 | 6 | 128 | 13 | 152 | 9.71e-20 | 85.1 |
| Msa1313590 | MtrunA17_Chr5g0435641 | 36.893 | 103 | 64 | 1 | 12 | 113 | 7 | 109 | 1.51e-19 | 84.7 |
| Msa1313590 | MtrunA17_Chr1g0200201 | 40.860 | 93 | 55 | 0 | 13 | 105 | 73 | 165 | 3.65e-19 | 84.7 |
| Msa1313590 | MtrunA17_Chr8g0351701 | 38.462 | 104 | 63 | 1 | 13 | 115 | 24 | 127 | 7.58e-19 | 83.6 |
| Msa1313590 | MtrunA17_Chr1g0184271 | 38.235 | 102 | 62 | 1 | 13 | 113 | 13 | 114 | 9.23e-19 | 83.6 |
| Msa1313590 | MtrunA17_Chr6g0460951 | 38.614 | 101 | 61 | 1 | 13 | 112 | 41 | 141 | 1.34e-18 | 82.8 |
| Msa1313590 | MtrunA17_Chr7g0261031 | 39.216 | 102 | 61 | 1 | 13 | 113 | 9 | 110 | 1.92e-18 | 82.4 |
| Msa1313590 | MtrunA17_Chr3g0113891 | 36.667 | 90 | 57 | 0 | 9 | 98 | 11 | 100 | 3.84e-18 | 80.9 |
| Msa1313590 | MtrunA17_Chr8g0351721 | 41.176 | 102 | 59 | 1 | 13 | 113 | 19 | 120 | 4.62e-18 | 81.3 |
| Msa1313590 | MtrunA17_Chr5g0432451 | 38.182 | 110 | 66 | 2 | 8 | 116 | 39 | 147 | 7.91e-18 | 80.9 |
| Msa1313590 | MtrunA17_Chr1g0184281 | 33.803 | 142 | 88 | 4 | 13 | 151 | 16 | 154 | 3.74e-16 | 75.9 |
| Msa1313590 | MtrunA17_Chr6g0460941 | 37.500 | 88 | 54 | 1 | 13 | 99 | 8 | 95 | 7.98e-16 | 71.6 |
| Msa1313590 | MtrunA17_Chr7g0245871 | 33.663 | 101 | 66 | 1 | 13 | 112 | 28 | 128 | 3.74e-15 | 73.6 |
| Msa1313590 | MtrunA17_Chr4g0046201 | 32.184 | 87 | 59 | 0 | 12 | 98 | 6 | 92 | 7.94e-14 | 70.5 |
| Msa1313590 | MtrunA17_Chr7g0245861 | 35.644 | 101 | 62 | 2 | 1 | 98 | 1 | 101 | 3.36e-13 | 65.9 |
| Msa1313590 | MtrunA17_Chr8g0374581 | 34.951 | 103 | 59 | 2 | 11 | 105 | 7 | 109 | 2.17e-12 | 65.5 |
| Msa1313590 | MtrunA17_Chr2g0326041 | 58.333 | 48 | 17 | 1 | 13 | 60 | 34 | 78 | 3.39e-12 | 61.6 |
| Msa1313590 | MtrunA17_Chr6g0449311 | 45.000 | 80 | 43 | 1 | 43 | 121 | 4 | 83 | 6.67e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313590 | AT3G13850.1 | 73.276 | 116 | 31 | 0 | 11 | 126 | 35 | 150 | 3.85e-56 | 183 |
| Msa1313590 | AT1G72980.1 | 52.101 | 119 | 57 | 0 | 9 | 127 | 10 | 128 | 5.25e-39 | 137 |
| Msa1313590 | AT3G47870.1 | 52.294 | 109 | 52 | 0 | 9 | 117 | 33 | 141 | 1.46e-31 | 120 |
| Msa1313590 | AT5G63090.4 | 41.284 | 109 | 64 | 0 | 5 | 113 | 4 | 112 | 4.05e-26 | 102 |
| Msa1313590 | AT5G63090.3 | 41.284 | 109 | 64 | 0 | 5 | 113 | 4 | 112 | 4.05e-26 | 102 |
| Msa1313590 | AT5G63090.2 | 41.284 | 109 | 64 | 0 | 5 | 113 | 4 | 112 | 4.05e-26 | 102 |
| Msa1313590 | AT5G63090.1 | 41.284 | 109 | 64 | 0 | 5 | 113 | 4 | 112 | 4.05e-26 | 102 |
| Msa1313590 | AT1G65620.1 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 6.02e-26 | 102 |
| Msa1313590 | AT1G65620.4 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 6.02e-26 | 102 |
| Msa1313590 | AT1G65620.3 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 6.02e-26 | 102 |
| Msa1313590 | AT1G65620.5 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 6.02e-26 | 102 |
| Msa1313590 | AT1G65620.2 | 41.071 | 112 | 66 | 0 | 6 | 117 | 3 | 114 | 6.02e-26 | 102 |
| Msa1313590 | AT3G27650.1 | 41.584 | 101 | 59 | 0 | 6 | 106 | 33 | 133 | 2.80e-24 | 96.7 |
| Msa1313590 | AT2G30130.1 | 34.677 | 124 | 81 | 0 | 10 | 133 | 6 | 129 | 6.46e-23 | 94.4 |
| Msa1313590 | AT3G50510.1 | 40.777 | 103 | 61 | 0 | 13 | 115 | 13 | 115 | 8.47e-23 | 94.0 |
| Msa1313590 | AT3G50510.2 | 40.777 | 103 | 61 | 0 | 13 | 115 | 13 | 115 | 8.47e-23 | 94.0 |
| Msa1313590 | AT1G31320.1 | 42.529 | 87 | 50 | 0 | 13 | 99 | 14 | 100 | 1.12e-21 | 90.1 |
| Msa1313590 | AT3G26660.1 | 35.135 | 111 | 72 | 0 | 13 | 123 | 6 | 116 | 1.41e-21 | 88.6 |
| Msa1313590 | AT2G42430.1 | 39.130 | 115 | 65 | 3 | 2 | 113 | 5 | 117 | 3.07e-21 | 90.9 |
| Msa1313590 | AT3G26620.1 | 34.862 | 109 | 71 | 0 | 13 | 121 | 6 | 114 | 5.43e-21 | 87.0 |
| Msa1313590 | AT5G66870.1 | 35.185 | 108 | 70 | 0 | 8 | 115 | 3 | 110 | 6.63e-21 | 91.3 |
| Msa1313590 | AT2G28500.1 | 34.899 | 149 | 79 | 4 | 13 | 143 | 56 | 204 | 1.40e-20 | 89.0 |
| Msa1313590 | AT1G07900.1 | 36.800 | 125 | 68 | 2 | 13 | 126 | 34 | 158 | 2.17e-20 | 87.4 |
| Msa1313590 | AT3G58190.1 | 41.176 | 102 | 59 | 1 | 13 | 113 | 12 | 113 | 2.50e-20 | 87.8 |
| Msa1313590 | AT3G03760.1 | 40.594 | 101 | 59 | 1 | 13 | 112 | 52 | 152 | 1.16e-19 | 87.0 |
| Msa1313590 | AT1G06280.1 | 37.500 | 104 | 62 | 1 | 11 | 114 | 23 | 123 | 1.67e-19 | 85.5 |
| Msa1313590 | AT2G23660.2 | 37.000 | 100 | 61 | 1 | 9 | 108 | 2 | 99 | 3.67e-19 | 86.3 |
| Msa1313590 | AT2G23660.3 | 37.000 | 100 | 61 | 1 | 9 | 108 | 2 | 99 | 3.67e-19 | 86.3 |
| Msa1313590 | AT2G23660.1 | 37.000 | 100 | 61 | 1 | 9 | 108 | 2 | 99 | 3.67e-19 | 86.3 |
| Msa1313590 | AT1G16530.1 | 34.513 | 113 | 73 | 1 | 6 | 117 | 8 | 120 | 4.58e-19 | 83.2 |
| Msa1313590 | AT2G30340.1 | 35.238 | 105 | 68 | 0 | 8 | 112 | 48 | 152 | 5.65e-19 | 85.1 |
| Msa1313590 | AT2G30340.2 | 35.238 | 105 | 68 | 0 | 8 | 112 | 49 | 153 | 5.68e-19 | 85.1 |
| Msa1313590 | AT2G42440.1 | 37.000 | 100 | 62 | 1 | 13 | 111 | 8 | 107 | 1.82e-18 | 83.2 |
| Msa1313590 | AT4G00210.1 | 35.043 | 117 | 75 | 1 | 13 | 128 | 12 | 128 | 2.03e-18 | 82.8 |
| Msa1313590 | AT5G06080.1 | 31.655 | 139 | 86 | 2 | 12 | 141 | 7 | 145 | 3.82e-18 | 80.9 |
| Msa1313590 | AT2G19820.1 | 37.383 | 107 | 66 | 1 | 1 | 106 | 1 | 107 | 1.01e-17 | 78.2 |
| Msa1313590 | AT3G11090.1 | 34.545 | 110 | 65 | 2 | 9 | 118 | 8 | 110 | 1.69e-17 | 79.0 |
| Msa1313590 | AT2G45420.1 | 38.000 | 100 | 61 | 1 | 15 | 113 | 40 | 139 | 2.48e-17 | 80.5 |
| Msa1313590 | AT4G00220.1 | 37.255 | 102 | 63 | 1 | 15 | 115 | 20 | 121 | 3.61e-17 | 79.3 |
| Msa1313590 | AT2G40470.2 | 34.862 | 109 | 71 | 0 | 8 | 116 | 16 | 124 | 4.78e-17 | 78.6 |
| Msa1313590 | AT2G40470.1 | 34.862 | 109 | 71 | 0 | 8 | 116 | 41 | 149 | 6.19e-17 | 78.6 |
| Msa1313590 | AT2G31310.1 | 34.043 | 141 | 83 | 3 | 13 | 143 | 8 | 148 | 9.48e-17 | 77.4 |
| Msa1313590 | AT5G15060.1 | 40.741 | 81 | 46 | 1 | 5 | 83 | 10 | 90 | 3.33e-16 | 74.7 |
| Msa1313590 | AT5G35900.1 | 34.906 | 106 | 62 | 2 | 10 | 108 | 3 | 108 | 1.78e-15 | 74.3 |
| Msa1313590 | AT2G45410.1 | 34.058 | 138 | 86 | 3 | 15 | 147 | 19 | 156 | 5.50e-14 | 69.7 |
Find 43 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAACAACATAATAATAAT+TGG | 0.125422 | 8_4:-11628475 | Msa1313590:CDS |
| CTTAATGCACACAAATTATT+TGG | 0.164688 | 8_4:-11628965 | Msa1313590:CDS |
| TGTGATGAAAGAAATGAATT+AGG | 0.196401 | 8_4:-11628362 | Msa1313590:CDS |
| CAAATAATTTGTGTGCATTA+AGG | 0.234733 | 8_4:+11628966 | None:intergenic |
| CCACCAGGATCTATTGTTTC+CGG | 0.308401 | 8_4:-11628638 | Msa1313590:CDS |
| TGTCTATCATGAGGAAAATA+AGG | 0.316434 | 8_4:+11628998 | None:intergenic |
| ATGAATTCAGACTCATTGTT+AGG | 0.332397 | 8_4:-11628671 | Msa1313590:CDS |
| GCAACAACATAATAATAATT+GGG | 0.338766 | 8_4:-11628474 | Msa1313590:CDS |
| CAACAAATACAAGTTAATTA+TGG | 0.343182 | 8_4:-11628707 | Msa1313590:CDS |
| GTGATGAAAGAAATGAATTA+GGG | 0.378390 | 8_4:-11628361 | Msa1313590:CDS |
| TCACAAGGTATATCAAGAAT+TGG | 0.381403 | 8_4:+11628380 | None:intergenic |
| CCATGTTCTTCTTGTAATTG+TGG | 0.434750 | 8_4:+11628569 | None:intergenic |
| ACCTGTGGTGAAGTATTTCT+CGG | 0.435347 | 8_4:+11628330 | None:intergenic |
| CATCACTAGCATTACTACTT+TGG | 0.436790 | 8_4:+11628417 | None:intergenic |
| CTCATGGCTTGATCTTTAAG+AGG | 0.439515 | 8_4:+11628902 | None:intergenic |
| CTATCATCTTTGTCATTGCA+TGG | 0.444287 | 8_4:-11628440 | Msa1313590:CDS |
| TTTACACCTGCATCATCAAC+TGG | 0.451044 | 8_4:+11627667 | None:intergenic |
| ACAACCACCAACAGGATCAT+TGG | 0.454245 | 8_4:+11628850 | None:intergenic |
| TATTTGTAACAACCACCAAC+AGG | 0.515920 | 8_4:+11628842 | None:intergenic |
| CAACAACATAATAATAATTG+GGG | 0.530146 | 8_4:-11628473 | Msa1313590:CDS |
| TAAGGTGCTAGAATGCAATC+AGG | 0.530324 | 8_4:+11629016 | None:intergenic |
| TATTGTTTCCGGTACCGCGC+CGG | 0.538454 | 8_4:-11628627 | Msa1313590:CDS |
| TTATTATTATGTTGTTGCAA+AGG | 0.540482 | 8_4:+11628479 | None:intergenic |
| CCTGTGGTGAAGTATTTCTC+GGG | 0.548443 | 8_4:+11628331 | None:intergenic |
| AATAATATGCAGTGATGAAG+AGG | 0.551632 | 8_4:-11627819 | Msa1313590:intron |
| GTACCGGAAACAATAGATCC+TGG | 0.559473 | 8_4:+11628635 | None:intergenic |
| ATTACAAGAAGAACATGGAC+AGG | 0.564776 | 8_4:-11628564 | Msa1313590:CDS |
| AATTCATTTCTTTCATCACA+AGG | 0.571373 | 8_4:+11628365 | None:intergenic |
| CCCGAGAAATACTTCACCAC+AGG | 0.588850 | 8_4:-11628331 | Msa1313590:intron |
| GATCAAGATCATGATCTGAA+AGG | 0.590787 | 8_4:-11627722 | Msa1313590:CDS |
| AATTGTCTTTGTCTATCATG+AGG | 0.605255 | 8_4:+11628989 | None:intergenic |
| ATGGCTTGATCTTTAAGAGG+AGG | 0.607095 | 8_4:+11628905 | None:intergenic |
| CGGGCCAATGATCCTGTTGG+TGG | 0.607502 | 8_4:-11628854 | Msa1313590:CDS |
| ACATTGTAATGATAATGAGC+CGG | 0.614117 | 8_4:+11628608 | None:intergenic |
| GAGGGATTAATTAAAACAGA+TGG | 0.625680 | 8_4:-11627779 | Msa1313590:CDS |
| ACATGCAGCACATGCTTGAG+TGG | 0.644890 | 8_4:+11629063 | None:intergenic |
| CCACAATTACAAGAAGAACA+TGG | 0.648093 | 8_4:-11628569 | Msa1313590:CDS |
| ATGCGGGCCAATGATCCTGT+TGG | 0.648354 | 8_4:-11628857 | Msa1313590:CDS |
| ACAACATAATAATAATTGGG+GGG | 0.660517 | 8_4:-11628471 | Msa1313590:CDS |
| CTCTTAAAGATCAAGCCATG+AGG | 0.672372 | 8_4:-11628901 | Msa1313590:CDS |
| CCGGAAACAATAGATCCTGG+TGG | 0.687465 | 8_4:+11628638 | None:intergenic |
| AACAACATAATAATAATTGG+GGG | 0.697306 | 8_4:-11628472 | Msa1313590:CDS |
| GTAATGATAATGAGCCGGCG+CGG | 0.775589 | 8_4:+11628613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATTTATTGTTTATAT+AGG | + | chr8_4:11628643-11628662 | None:intergenic | 10.0% |
| !! | ATTTCATTTATTGTTTATAT+AGG | + | chr8_4:11628643-11628662 | None:intergenic | 10.0% |
| !!! | ATTATTGGATTAGAAATTAA+TGG | - | chr8_4:11628770-11628789 | Msa1313590:CDS | 15.0% |
| !! | TATATTGTTAAAATCAATGA+TGG | + | chr8_4:11628821-11628840 | None:intergenic | 15.0% |
| !!! | ATTATTGGATTAGAAATTAA+TGG | - | chr8_4:11628770-11628789 | Msa1313590:CDS | 15.0% |
| !! | TATATTGTTAAAATCAATGA+TGG | + | chr8_4:11628821-11628840 | None:intergenic | 15.0% |
| !! | CAACAAATACAAGTTAATTA+TGG | - | chr8_4:11628063-11628082 | Msa1313590:intron | 20.0% |
| !! | TTATTATTATGTTGTTGCAA+AGG | + | chr8_4:11628294-11628313 | None:intergenic | 20.0% |
| !! | TGCAACAACATAATAATAAT+TGG | - | chr8_4:11628295-11628314 | Msa1313590:intron | 20.0% |
| !! | GCAACAACATAATAATAATT+GGG | - | chr8_4:11628296-11628315 | Msa1313590:intron | 20.0% |
| !! | CAACAACATAATAATAATTG+GGG | - | chr8_4:11628297-11628316 | Msa1313590:intron | 20.0% |
| !! | AACAACATAATAATAATTGG+GGG | - | chr8_4:11628298-11628317 | Msa1313590:intron | 20.0% |
| !! | AGAAAAAAATAAATTACCTG+TGG | + | chr8_4:11628458-11628477 | None:intergenic | 20.0% |
| !! | ATATGTTTGTAGTGTATTAT+TGG | - | chr8_4:11628755-11628774 | Msa1313590:CDS | 20.0% |
| !! | TTAACAATATATTCACAGAA+TGG | - | chr8_4:11628830-11628849 | Msa1313590:CDS | 20.0% |
| !! | CAACAAATACAAGTTAATTA+TGG | - | chr8_4:11628063-11628082 | Msa1313590:intron | 20.0% |
| !! | TTATTATTATGTTGTTGCAA+AGG | + | chr8_4:11628294-11628313 | None:intergenic | 20.0% |
| !! | TGCAACAACATAATAATAAT+TGG | - | chr8_4:11628295-11628314 | Msa1313590:intron | 20.0% |
| !! | GCAACAACATAATAATAATT+GGG | - | chr8_4:11628296-11628315 | Msa1313590:intron | 20.0% |
| !! | CAACAACATAATAATAATTG+GGG | - | chr8_4:11628297-11628316 | Msa1313590:intron | 20.0% |
| !! | AACAACATAATAATAATTGG+GGG | - | chr8_4:11628298-11628317 | Msa1313590:intron | 20.0% |
| !! | AGAAAAAAATAAATTACCTG+TGG | + | chr8_4:11628458-11628477 | None:intergenic | 20.0% |
| !! | ATATGTTTGTAGTGTATTAT+TGG | - | chr8_4:11628755-11628774 | Msa1313590:CDS | 20.0% |
| !! | TTAACAATATATTCACAGAA+TGG | - | chr8_4:11628830-11628849 | Msa1313590:CDS | 20.0% |
| !! | CAAATAATTTGTGTGCATTA+AGG | + | chr8_4:11627807-11627826 | None:intergenic | 25.0% |
| ! | CTTAATGCACACAAATTATT+TGG | - | chr8_4:11627805-11627824 | Msa1313590:CDS | 25.0% |
| !!! | TCATTTTTCAATCTGATATG+CGG | - | chr8_4:11627896-11627915 | Msa1313590:intron | 25.0% |
| ! | ACAACATAATAATAATTGGG+GGG | - | chr8_4:11628299-11628318 | Msa1313590:intron | 25.0% |
| ! | AATTCATTTCTTTCATCACA+AGG | + | chr8_4:11628408-11628427 | None:intergenic | 25.0% |
| ! | TGTGATGAAAGAAATGAATT+AGG | - | chr8_4:11628408-11628427 | Msa1313590:CDS | 25.0% |
| ! | GTGATGAAAGAAATGAATTA+GGG | - | chr8_4:11628409-11628428 | Msa1313590:CDS | 25.0% |
| ! | GATAGTAATTTGATAGGAAA+GGG | + | chr8_4:11628608-11628627 | None:intergenic | 25.0% |
| ! | TTAGTCGATAGTAATTTGAT+AGG | + | chr8_4:11628614-11628633 | None:intergenic | 25.0% |
| !! | CAAATAATTTGTGTGCATTA+AGG | + | chr8_4:11627807-11627826 | None:intergenic | 25.0% |
| ! | CTTAATGCACACAAATTATT+TGG | - | chr8_4:11627805-11627824 | Msa1313590:CDS | 25.0% |
| !!! | TCATTTTTCAATCTGATATG+CGG | - | chr8_4:11627896-11627915 | Msa1313590:intron | 25.0% |
| ! | ACAACATAATAATAATTGGG+GGG | - | chr8_4:11628299-11628318 | Msa1313590:intron | 25.0% |
| ! | AATTCATTTCTTTCATCACA+AGG | + | chr8_4:11628408-11628427 | None:intergenic | 25.0% |
| ! | TGTGATGAAAGAAATGAATT+AGG | - | chr8_4:11628408-11628427 | Msa1313590:CDS | 25.0% |
| ! | GTGATGAAAGAAATGAATTA+GGG | - | chr8_4:11628409-11628428 | Msa1313590:CDS | 25.0% |
| ! | GATAGTAATTTGATAGGAAA+GGG | + | chr8_4:11628608-11628627 | None:intergenic | 25.0% |
| ! | TTAGTCGATAGTAATTTGAT+AGG | + | chr8_4:11628614-11628633 | None:intergenic | 25.0% |
| TGTCTATCATGAGGAAAATA+AGG | + | chr8_4:11627775-11627794 | None:intergenic | 30.0% | |
| AATTGTCTTTGTCTATCATG+AGG | + | chr8_4:11627784-11627803 | None:intergenic | 30.0% | |
| TTGAAAAATGATTGTCCTCA+TGG | + | chr8_4:11627887-11627906 | None:intergenic | 30.0% | |
| !! | CATTTTTCAATCTGATATGC+GGG | - | chr8_4:11627897-11627916 | Msa1313590:intron | 30.0% |
| TTGAGATTGTGATCGAAAAA+TGG | + | chr8_4:11628022-11628041 | None:intergenic | 30.0% | |
| ATGAATTCAGACTCATTGTT+AGG | - | chr8_4:11628099-11628118 | Msa1313590:intron | 30.0% | |
| ! | TTAGGTTTTTATAATCCACC+AGG | - | chr8_4:11628117-11628136 | Msa1313590:intron | 30.0% |
| ! | ACATTGTAATGATAATGAGC+CGG | + | chr8_4:11628165-11628184 | None:intergenic | 30.0% |
| TCACAAGGTATATCAAGAAT+TGG | + | chr8_4:11628393-11628412 | None:intergenic | 30.0% | |
| TGAAAAAGTTACATTACCGA+CGG | - | chr8_4:11628504-11628523 | Msa1313590:CDS | 30.0% | |
| GGAAATATGGTTAGTAGTAT+GGG | - | chr8_4:11628525-11628544 | Msa1313590:CDS | 30.0% | |
| !! | ACATTGAAGGAGTATTATGT+AGG | - | chr8_4:11628552-11628571 | Msa1313590:CDS | 30.0% |
| CGATAGTAATTTGATAGGAA+AGG | + | chr8_4:11628609-11628628 | None:intergenic | 30.0% | |
| AATAATATGCAGTGATGAAG+AGG | - | chr8_4:11628951-11628970 | Msa1313590:CDS | 30.0% | |
| !!! | GTTTTGTTTAAGATAGACGA+GGG | - | chr8_4:11628973-11628992 | Msa1313590:CDS | 30.0% |
| GAGGGATTAATTAAAACAGA+TGG | - | chr8_4:11628991-11629010 | Msa1313590:CDS | 30.0% | |
| TGTCTATCATGAGGAAAATA+AGG | + | chr8_4:11627775-11627794 | None:intergenic | 30.0% | |
| AATTGTCTTTGTCTATCATG+AGG | + | chr8_4:11627784-11627803 | None:intergenic | 30.0% | |
| TTGAAAAATGATTGTCCTCA+TGG | + | chr8_4:11627887-11627906 | None:intergenic | 30.0% | |
| !! | CATTTTTCAATCTGATATGC+GGG | - | chr8_4:11627897-11627916 | Msa1313590:intron | 30.0% |
| TTGAGATTGTGATCGAAAAA+TGG | + | chr8_4:11628022-11628041 | None:intergenic | 30.0% | |
| ATGAATTCAGACTCATTGTT+AGG | - | chr8_4:11628099-11628118 | Msa1313590:intron | 30.0% | |
| ! | TTAGGTTTTTATAATCCACC+AGG | - | chr8_4:11628117-11628136 | Msa1313590:intron | 30.0% |
| ! | ACATTGTAATGATAATGAGC+CGG | + | chr8_4:11628165-11628184 | None:intergenic | 30.0% |
| TCACAAGGTATATCAAGAAT+TGG | + | chr8_4:11628393-11628412 | None:intergenic | 30.0% | |
| TGAAAAAGTTACATTACCGA+CGG | - | chr8_4:11628504-11628523 | Msa1313590:CDS | 30.0% | |
| GGAAATATGGTTAGTAGTAT+GGG | - | chr8_4:11628525-11628544 | Msa1313590:CDS | 30.0% | |
| !! | ACATTGAAGGAGTATTATGT+AGG | - | chr8_4:11628552-11628571 | Msa1313590:CDS | 30.0% |
| CGATAGTAATTTGATAGGAA+AGG | + | chr8_4:11628609-11628628 | None:intergenic | 30.0% | |
| AATAATATGCAGTGATGAAG+AGG | - | chr8_4:11628951-11628970 | Msa1313590:CDS | 30.0% | |
| !!! | GTTTTGTTTAAGATAGACGA+GGG | - | chr8_4:11628973-11628992 | Msa1313590:CDS | 30.0% |
| GAGGGATTAATTAAAACAGA+TGG | - | chr8_4:11628991-11629010 | Msa1313590:CDS | 30.0% | |
| TATTTGTAACAACCACCAAC+AGG | + | chr8_4:11627931-11627950 | None:intergenic | 35.0% | |
| CCATGTTCTTCTTGTAATTG+TGG | + | chr8_4:11628204-11628223 | None:intergenic | 35.0% | |
| CCACAATTACAAGAAGAACA+TGG | - | chr8_4:11628201-11628220 | Msa1313590:intron | 35.0% | |
| ATTACAAGAAGAACATGGAC+AGG | - | chr8_4:11628206-11628225 | Msa1313590:intron | 35.0% | |
| CTATCATCTTTGTCATTGCA+TGG | - | chr8_4:11628330-11628349 | Msa1313590:intron | 35.0% | |
| CATCACTAGCATTACTACTT+TGG | + | chr8_4:11628356-11628375 | None:intergenic | 35.0% | |
| TTACATTACCGACGGAAATA+TGG | - | chr8_4:11628512-11628531 | Msa1313590:CDS | 35.0% | |
| ACTACTAACCATATTTCCGT+CGG | + | chr8_4:11628523-11628542 | None:intergenic | 35.0% | |
| CGGAAATATGGTTAGTAGTA+TGG | - | chr8_4:11628524-11628543 | Msa1313590:CDS | 35.0% | |
| ! | TAGTATGGGTTGAACATTGA+AGG | - | chr8_4:11628539-11628558 | Msa1313590:CDS | 35.0% |
| ATCTAACATGATCCAGTTCT+TGG | - | chr8_4:11628926-11628945 | Msa1313590:CDS | 35.0% | |
| GCATATTATTAGCCAAGAAC+TGG | + | chr8_4:11628941-11628960 | None:intergenic | 35.0% | |
| !!! | GGTTTTGTTTAAGATAGACG+AGG | - | chr8_4:11628972-11628991 | Msa1313590:CDS | 35.0% |
| GATCAAGATCATGATCTGAA+AGG | - | chr8_4:11629048-11629067 | Msa1313590:CDS | 35.0% | |
| TATTTGTAACAACCACCAAC+AGG | + | chr8_4:11627931-11627950 | None:intergenic | 35.0% | |
| CCATGTTCTTCTTGTAATTG+TGG | + | chr8_4:11628204-11628223 | None:intergenic | 35.0% | |
| CCACAATTACAAGAAGAACA+TGG | - | chr8_4:11628201-11628220 | Msa1313590:intron | 35.0% | |
| ATTACAAGAAGAACATGGAC+AGG | - | chr8_4:11628206-11628225 | Msa1313590:intron | 35.0% | |
| CTATCATCTTTGTCATTGCA+TGG | - | chr8_4:11628330-11628349 | Msa1313590:intron | 35.0% | |
| CATCACTAGCATTACTACTT+TGG | + | chr8_4:11628356-11628375 | None:intergenic | 35.0% | |
| TTACATTACCGACGGAAATA+TGG | - | chr8_4:11628512-11628531 | Msa1313590:CDS | 35.0% | |
| ACTACTAACCATATTTCCGT+CGG | + | chr8_4:11628523-11628542 | None:intergenic | 35.0% | |
| CGGAAATATGGTTAGTAGTA+TGG | - | chr8_4:11628524-11628543 | Msa1313590:CDS | 35.0% | |
| ! | TAGTATGGGTTGAACATTGA+AGG | - | chr8_4:11628539-11628558 | Msa1313590:CDS | 35.0% |
| ATCTAACATGATCCAGTTCT+TGG | - | chr8_4:11628926-11628945 | Msa1313590:CDS | 35.0% | |
| GCATATTATTAGCCAAGAAC+TGG | + | chr8_4:11628941-11628960 | None:intergenic | 35.0% | |
| !!! | GGTTTTGTTTAAGATAGACG+AGG | - | chr8_4:11628972-11628991 | Msa1313590:CDS | 35.0% |
| GATCAAGATCATGATCTGAA+AGG | - | chr8_4:11629048-11629067 | Msa1313590:CDS | 35.0% | |
| ! | TAAGGTGCTAGAATGCAATC+AGG | + | chr8_4:11627757-11627776 | None:intergenic | 40.0% |
| ! | ATGGCTTGATCTTTAAGAGG+AGG | + | chr8_4:11627868-11627887 | None:intergenic | 40.0% |
| CTCATGGCTTGATCTTTAAG+AGG | + | chr8_4:11627871-11627890 | None:intergenic | 40.0% | |
| CTCTTAAAGATCAAGCCATG+AGG | - | chr8_4:11627869-11627888 | Msa1313590:intron | 40.0% | |
| ! | ACCTGTGGTGAAGTATTTCT+CGG | + | chr8_4:11628443-11628462 | None:intergenic | 40.0% |
| ! | TAAGGTGCTAGAATGCAATC+AGG | + | chr8_4:11627757-11627776 | None:intergenic | 40.0% |
| ! | ATGGCTTGATCTTTAAGAGG+AGG | + | chr8_4:11627868-11627887 | None:intergenic | 40.0% |
| CTCATGGCTTGATCTTTAAG+AGG | + | chr8_4:11627871-11627890 | None:intergenic | 40.0% | |
| CTCTTAAAGATCAAGCCATG+AGG | - | chr8_4:11627869-11627888 | Msa1313590:intron | 40.0% | |
| ! | ACCTGTGGTGAAGTATTTCT+CGG | + | chr8_4:11628443-11628462 | None:intergenic | 40.0% |
| ACAACCACCAACAGGATCAT+TGG | + | chr8_4:11627923-11627942 | None:intergenic | 45.0% | |
| CCACCAGGATCTATTGTTTC+CGG | - | chr8_4:11628132-11628151 | Msa1313590:intron | 45.0% | |
| GTACCGGAAACAATAGATCC+TGG | + | chr8_4:11628138-11628157 | None:intergenic | 45.0% | |
| ! | CCTGTGGTGAAGTATTTCTC+GGG | + | chr8_4:11628442-11628461 | None:intergenic | 45.0% |
| ACAACCACCAACAGGATCAT+TGG | + | chr8_4:11627923-11627942 | None:intergenic | 45.0% | |
| CCACCAGGATCTATTGTTTC+CGG | - | chr8_4:11628132-11628151 | Msa1313590:intron | 45.0% | |
| GTACCGGAAACAATAGATCC+TGG | + | chr8_4:11628138-11628157 | None:intergenic | 45.0% | |
| ! | CCTGTGGTGAAGTATTTCTC+GGG | + | chr8_4:11628442-11628461 | None:intergenic | 45.0% |
| ACATGCAGCACATGCTTGAG+TGG | + | chr8_4:11627710-11627729 | None:intergenic | 50.0% | |
| CCGGAAACAATAGATCCTGG+TGG | + | chr8_4:11628135-11628154 | None:intergenic | 50.0% | |
| ! | GTAATGATAATGAGCCGGCG+CGG | + | chr8_4:11628160-11628179 | None:intergenic | 50.0% |
| CCCGAGAAATACTTCACCAC+AGG | - | chr8_4:11628439-11628458 | Msa1313590:CDS | 50.0% | |
| ACATGCAGCACATGCTTGAG+TGG | + | chr8_4:11627710-11627729 | None:intergenic | 50.0% | |
| CCGGAAACAATAGATCCTGG+TGG | + | chr8_4:11628135-11628154 | None:intergenic | 50.0% | |
| ! | GTAATGATAATGAGCCGGCG+CGG | + | chr8_4:11628160-11628179 | None:intergenic | 50.0% |
| CCCGAGAAATACTTCACCAC+AGG | - | chr8_4:11628439-11628458 | Msa1313590:CDS | 50.0% | |
| ATGCGGGCCAATGATCCTGT+TGG | - | chr8_4:11627913-11627932 | Msa1313590:intron | 55.0% | |
| TATTGTTTCCGGTACCGCGC+CGG | - | chr8_4:11628143-11628162 | Msa1313590:intron | 55.0% | |
| ATGCGGGCCAATGATCCTGT+TGG | - | chr8_4:11627913-11627932 | Msa1313590:intron | 55.0% | |
| TATTGTTTCCGGTACCGCGC+CGG | - | chr8_4:11628143-11628162 | Msa1313590:intron | 55.0% | |
| CGGGCCAATGATCCTGTTGG+TGG | - | chr8_4:11627916-11627935 | Msa1313590:intron | 60.0% | |
| ATAATGAGCCGGCGCGGTAC+CGG | + | chr8_4:11628154-11628173 | None:intergenic | 60.0% | |
| CGGGCCAATGATCCTGTTGG+TGG | - | chr8_4:11627916-11627935 | Msa1313590:intron | 60.0% | |
| ATAATGAGCCGGCGCGGTAC+CGG | + | chr8_4:11628154-11628173 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 11627682 | 11629110 | 11627682 | ID=Msa1313590;Name=Msa1313590 |
| chr8_4 | mRNA | 11627682 | 11629110 | 11627682 | ID=Msa1313590-mRNA-1;Parent=Msa1313590;Name=Msa1313590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|308 |
| chr8_4 | exon | 11628332 | 11629110 | 11628332 | ID=Msa1313590-mRNA-1:exon:4397;Parent=Msa1313590-mRNA-1 |
| chr8_4 | exon | 11627682 | 11627829 | 11627682 | ID=Msa1313590-mRNA-1:exon:4396;Parent=Msa1313590-mRNA-1 |
| chr8_4 | CDS | 11628332 | 11629110 | 11628332 | ID=Msa1313590-mRNA-1:cds;Parent=Msa1313590-mRNA-1 |
| chr8_4 | CDS | 11627682 | 11627829 | 11627682 | ID=Msa1313590-mRNA-1:cds;Parent=Msa1313590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
