Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315540 | sp|Q8GX84|C3H1_ARATH | 68.790 | 314 | 92 | 4 | 60 | 369 | 25 | 336 | 1.38e-156 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315540 | G7KSR1 | 85.260 | 346 | 40 | 3 | 35 | 369 | 42 | 387 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1315540 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315540 | MtrunA17_Chr7g0269781 | 88.991 | 327 | 31 | 2 | 48 | 369 | 1 | 327 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315540 | AT1G01350.1 | 68.790 | 314 | 92 | 4 | 60 | 369 | 25 | 336 | 1.40e-157 | 446 |
| Msa1315540 | AT5G06420.1 | 67.722 | 316 | 93 | 4 | 58 | 369 | 61 | 371 | 3.28e-156 | 444 |
| Msa1315540 | AT5G06420.2 | 67.722 | 316 | 93 | 4 | 58 | 369 | 61 | 371 | 3.28e-156 | 444 |
| Msa1315540 | AT4G01023.1 | 66.667 | 57 | 19 | 0 | 302 | 358 | 78 | 134 | 2.29e-26 | 105 |
| Msa1315540 | AT4G01023.3 | 66.667 | 57 | 19 | 0 | 302 | 358 | 97 | 153 | 5.73e-26 | 105 |
| Msa1315540 | AT4G01023.2 | 66.667 | 57 | 19 | 0 | 302 | 358 | 97 | 153 | 7.59e-26 | 104 |
Find 84 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATATCGTTTAATATTTA+TGG | 0.042376 | 8_4:-15018871 | Msa1315540:CDS |
| ACATGTGCTTTGAACTTAAA+TGG | 0.105377 | 8_4:+15016608 | None:intergenic |
| CAACACATCTTCTCCGATTC+AGG | 0.223403 | 8_4:-15018218 | Msa1315540:intron |
| TAAATATTAAACGATATTAA+AGG | 0.235924 | 8_4:+15018874 | None:intergenic |
| AAAATGAAAGCTAGGTTTCT+TGG | 0.236965 | 8_4:+15017500 | None:intergenic |
| CATAAAGCTTCAGCCACTTC+TGG | 0.246245 | 8_4:-15018266 | Msa1315540:intron |
| GTGGGTCACACGGTCCTCTT+CGG | 0.314266 | 8_4:-15017236 | Msa1315540:CDS |
| TTGGTGATTTGCAGGAGATT+TGG | 0.316183 | 8_4:+15017847 | None:intergenic |
| CTCATATTCTTCTTATTAAG+AGG | 0.321707 | 8_4:+15017672 | None:intergenic |
| TGTTCAGTTTGGTGATTTGC+AGG | 0.323435 | 8_4:+15017839 | None:intergenic |
| GATCGAGGTGATTACAAATC+TGG | 0.331028 | 8_4:-15017102 | Msa1315540:CDS |
| TATACATACCTTGTTCAGTT+TGG | 0.352276 | 8_4:+15017828 | None:intergenic |
| TGGGTCACACGGTCCTCTTC+GGG | 0.377787 | 8_4:-15017235 | Msa1315540:CDS |
| GGATATATGCAAGGATTATA+AGG | 0.382708 | 8_4:-15017169 | Msa1315540:CDS |
| TGCAAGGATTATAAGGAAAC+TGG | 0.390916 | 8_4:-15017162 | Msa1315540:CDS |
| CATGTGCTTTGAACTTAAAT+GGG | 0.392797 | 8_4:+15016609 | None:intergenic |
| ATCGTTTAATATTTATGGAC+AGG | 0.407708 | 8_4:-15018866 | Msa1315540:intron |
| TTATAATCCTTGCATATATC+CGG | 0.408034 | 8_4:+15017171 | None:intergenic |
| GGTTTCTTGGATTCTTCGTT+CGG | 0.408554 | 8_4:+15017513 | None:intergenic |
| GTCGTGGCAGCTTATTAGTA+TGG | 0.411969 | 8_4:-15017882 | Msa1315540:CDS |
| TAGCAAAGCAACCGCAACTT+TGG | 0.426930 | 8_4:-15017445 | Msa1315540:CDS |
| CTTGCTTAAGAGCTCTTTCA+CGG | 0.431115 | 8_4:+15017385 | None:intergenic |
| CTGTGAGCATTGTGCATTGA+AGG | 0.436410 | 8_4:-15016896 | Msa1315540:intron |
| TGCTTGCACTTGGTTGAGAC+AGG | 0.443250 | 8_4:+15016925 | None:intergenic |
| GAAACCTAACTAACCTGAAT+CGG | 0.447164 | 8_4:+15018205 | None:intergenic |
| AAAATAGTCATTGATCGTAC+TGG | 0.453777 | 8_4:+15016671 | None:intergenic |
| GAAGACTCAAAATGAAAGCT+AGG | 0.455285 | 8_4:+15017492 | None:intergenic |
| GAAACTGGTTACTGTGGGTA+TGG | 0.457746 | 8_4:-15017147 | Msa1315540:CDS |
| CATTTGTAGAAATCCATTTG+TGG | 0.461066 | 8_4:-15016950 | Msa1315540:CDS |
| GAAAGCAAGGAGGATGAGAT+TGG | 0.475774 | 8_4:-15017046 | Msa1315540:CDS |
| CAATAATTACACAGATCATA+AGG | 0.476447 | 8_4:-15017301 | Msa1315540:CDS |
| GTGGCAGATGGAGAAGGAAT+GGG | 0.495492 | 8_4:-15017079 | Msa1315540:CDS |
| GCAAACAATTGCCAGTGAAA+AGG | 0.499122 | 8_4:-15017262 | Msa1315540:CDS |
| AAACTGGTTACTGTGGGTAT+GGG | 0.503271 | 8_4:-15017146 | Msa1315540:CDS |
| ATGTGTTGGCCGCGGCAACT+TGG | 0.504552 | 8_4:+15018233 | None:intergenic |
| GTTGAGACAGGATCCACAAA+TGG | 0.505798 | 8_4:+15016937 | None:intergenic |
| CTACAAATGAAACACGCAAA+TGG | 0.511076 | 8_4:+15016964 | None:intergenic |
| ATCGAGGTGATTACAAATCT+GGG | 0.520829 | 8_4:-15017101 | Msa1315540:CDS |
| TATTAAAGGATTATACTTGA+CGG | 0.522898 | 8_4:+15018888 | None:intergenic |
| AGCAAGATTTGATTATCAGC+CGG | 0.527438 | 8_4:-15017190 | Msa1315540:CDS |
| TTCTTCGTTCGGTTTAGCAT+AGG | 0.529758 | 8_4:+15017524 | None:intergenic |
| TGCAGGTGAGGATGCAGAAG+AGG | 0.532110 | 8_4:-15017022 | Msa1315540:CDS |
| GGTGGCAGATGGAGAAGGAA+TGG | 0.534084 | 8_4:-15017080 | Msa1315540:CDS |
| CTCTTAATAAGAAGAATATG+AGG | 0.536262 | 8_4:-15017671 | Msa1315540:CDS |
| CTTAAGAGCTCTTTCACGGA+TGG | 0.538525 | 8_4:+15017389 | None:intergenic |
| AATTACACAGATCATAAGGC+TGG | 0.540860 | 8_4:-15017297 | Msa1315540:CDS |
| GCGAAGCACTATTGAGAATG+AGG | 0.543921 | 8_4:-15017646 | Msa1315540:CDS |
| TTACAAATCTGGGTGGCAGA+TGG | 0.553483 | 8_4:-15017091 | Msa1315540:CDS |
| TATTAGTATGGAAGATTCTG+AGG | 0.556688 | 8_4:-15017870 | Msa1315540:CDS |
| ACAGAAGTAGTGCTTGCACT+TGG | 0.557721 | 8_4:+15016915 | None:intergenic |
| TCATGAGATTCGAAAGAAGA+TGG | 0.559186 | 8_4:-15016714 | Msa1315540:CDS |
| CAAGCGACAGAGAGTCTCAA+AGG | 0.560300 | 8_4:-15017366 | Msa1315540:CDS |
| AACTGGTTACTGTGGGTATG+GGG | 0.562522 | 8_4:-15017145 | Msa1315540:CDS |
| AGGTGAGGATGCAGAAGAGG+AGG | 0.575195 | 8_4:-15017019 | Msa1315540:CDS |
| ATCTGGGTGGCAGATGGAGA+AGG | 0.575589 | 8_4:-15017085 | Msa1315540:CDS |
| GGGATGAAGCTGAGAAAGCA+AGG | 0.584805 | 8_4:-15017059 | Msa1315540:CDS |
| TATAAGGAAACTGGTTACTG+TGG | 0.586008 | 8_4:-15017153 | Msa1315540:CDS |
| ACAATTGCCAGTGAAAAGGC+TGG | 0.588175 | 8_4:-15017258 | Msa1315540:CDS |
| CGGAGAAGATGTGTTGGCCG+CGG | 0.589229 | 8_4:+15018225 | None:intergenic |
| GATGAGATTGGCTGCAGGTG+AGG | 0.590274 | 8_4:-15017034 | Msa1315540:CDS |
| GGCAGAGCTCTTTGAAGAGG+CGG | 0.591989 | 8_4:+15017545 | None:intergenic |
| GCAAATCACCAAACTGAACA+AGG | 0.596043 | 8_4:-15017836 | Msa1315540:intron |
| AGAGCTCTTTGAAGAGGCGG+TGG | 0.597520 | 8_4:+15017548 | None:intergenic |
| ATAGGCAGAGCTCTTTGAAG+AGG | 0.600392 | 8_4:+15017542 | None:intergenic |
| GAAAAGGCTGGTGGGTCACA+CGG | 0.600903 | 8_4:-15017246 | Msa1315540:CDS |
| AGGAGGATGAGATTGGCTGC+AGG | 0.603143 | 8_4:-15017039 | Msa1315540:CDS |
| CTGAATCGGAGAAGATGTGT+TGG | 0.606762 | 8_4:+15018219 | None:intergenic |
| ATTGCCAGTGAAAAGGCTGG+TGG | 0.607353 | 8_4:-15017255 | Msa1315540:CDS |
| AGCACTATTGAGAATGAGGA+TGG | 0.610986 | 8_4:-15017642 | Msa1315540:CDS |
| GGTGAGGATGCAGAAGAGGA+GGG | 0.615274 | 8_4:-15017018 | Msa1315540:CDS |
| GATTCGAAAGAAGATGGCTG+AGG | 0.618322 | 8_4:-15016708 | Msa1315540:CDS |
| ATAAGGAAACTGGTTACTGT+GGG | 0.628079 | 8_4:-15017152 | Msa1315540:CDS |
| TTATCAGCCGGATATATGCA+AGG | 0.629970 | 8_4:-15017178 | Msa1315540:CDS |
| TTGCCAGTGAAAAGGCTGGT+GGG | 0.630138 | 8_4:-15017254 | Msa1315540:CDS |
| GCATCAAAACCAAGTTGCCG+CGG | 0.631230 | 8_4:-15018242 | Msa1315540:CDS |
| AGTCTCAGTCTCCAAAGTTG+CGG | 0.639796 | 8_4:+15017434 | None:intergenic |
| TAAATGGGAAAACAAAAGAG+AGG | 0.644975 | 8_4:+15016624 | None:intergenic |
| ATGTGAGCTGAAGCCCGAAG+AGG | 0.647511 | 8_4:+15017222 | None:intergenic |
| TGTAAGTTTATGCATGATCG+AGG | 0.650874 | 8_4:-15017117 | Msa1315540:CDS |
| GAGGATGTAAAATTATACAA+AGG | 0.658301 | 8_4:-15017327 | Msa1315540:CDS |
| TGAGGATGGCTCGAACAATG+AGG | 0.664875 | 8_4:-15017628 | Msa1315540:CDS |
| AGGAAAGAGTAATCGTTCCG+AGG | 0.677145 | 8_4:-15017346 | Msa1315540:CDS |
| ATGAAGCTGAGAAAGCAAGG+AGG | 0.730792 | 8_4:-15017056 | Msa1315540:CDS |
| GAGGTGATTACAAATCTGGG+TGG | 0.758440 | 8_4:-15017098 | Msa1315540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTAAACGATATTAA+AGG | + | chr8_4:15016639-15016658 | None:intergenic | 10.0% |
| !! | TTAATATCGTTTAATATTTA+TGG | - | chr8_4:15016639-15016658 | Msa1315540:three_prime_UTR | 10.0% |
| !!! | AAAAAGAAATTCAAATTTTA+TGG | - | chr8_4:15016868-15016887 | Msa1315540:intron | 10.0% |
| !!! | AAAAGAAATTCAAATTTTAT+GGG | - | chr8_4:15016869-15016888 | Msa1315540:intron | 10.0% |
| !! | TAAATATTAAACGATATTAA+AGG | + | chr8_4:15016639-15016658 | None:intergenic | 10.0% |
| !! | TTAATATCGTTTAATATTTA+TGG | - | chr8_4:15016639-15016658 | Msa1315540:three_prime_UTR | 10.0% |
| !!! | AAAAAGAAATTCAAATTTTA+TGG | - | chr8_4:15016868-15016887 | Msa1315540:intron | 10.0% |
| !!! | AAAAGAAATTCAAATTTTAT+GGG | - | chr8_4:15016869-15016888 | Msa1315540:intron | 10.0% |
| !! | TGTTATCTAACTATAAATAT+AGG | + | chr8_4:15016771-15016790 | None:intergenic | 15.0% |
| !! | CAAATTCAAATTTCAAAATT+TGG | - | chr8_4:15017005-15017024 | Msa1315540:CDS | 15.0% |
| !! | TGTTATCTAACTATAAATAT+AGG | + | chr8_4:15016771-15016790 | None:intergenic | 15.0% |
| !! | CAAATTCAAATTTCAAAATT+TGG | - | chr8_4:15017005-15017024 | Msa1315540:CDS | 15.0% |
| !! | TATTAAAGGATTATACTTGA+CGG | + | chr8_4:15016625-15016644 | None:intergenic | 20.0% |
| !! | TTTGTCTATATTAAAGGAAT+TGG | + | chr8_4:15016671-15016690 | None:intergenic | 20.0% |
| !!! | ATGGTTTTTGTCTATATTAA+AGG | + | chr8_4:15016677-15016696 | None:intergenic | 20.0% |
| !! | GAAATCACAAGAATAATTAT+TGG | + | chr8_4:15017333-15017352 | None:intergenic | 20.0% |
| !!! | GTTATAATATTTGGTTTGTA+AGG | + | chr8_4:15017453-15017472 | None:intergenic | 20.0% |
| !! | TTTCAGTTGGTTATAATATT+TGG | + | chr8_4:15017462-15017481 | None:intergenic | 20.0% |
| !!! | TTTGTATAATTTTACATCCT+CGG | + | chr8_4:15018184-15018203 | None:intergenic | 20.0% |
| !! | TATTAAAGGATTATACTTGA+CGG | + | chr8_4:15016625-15016644 | None:intergenic | 20.0% |
| !! | TTTGTCTATATTAAAGGAAT+TGG | + | chr8_4:15016671-15016690 | None:intergenic | 20.0% |
| !!! | ATGGTTTTTGTCTATATTAA+AGG | + | chr8_4:15016677-15016696 | None:intergenic | 20.0% |
| !! | GAAATCACAAGAATAATTAT+TGG | + | chr8_4:15017333-15017352 | None:intergenic | 20.0% |
| !!! | GTTATAATATTTGGTTTGTA+AGG | + | chr8_4:15017453-15017472 | None:intergenic | 20.0% |
| !! | TTTCAGTTGGTTATAATATT+TGG | + | chr8_4:15017462-15017481 | None:intergenic | 20.0% |
| !!! | TTTGTATAATTTTACATCCT+CGG | + | chr8_4:15018184-15018203 | None:intergenic | 20.0% |
| ! | ATCGTTTAATATTTATGGAC+AGG | - | chr8_4:15016644-15016663 | Msa1315540:three_prime_UTR | 25.0% |
| !!! | AAGTGATTTTAGAATGAGAA+AGG | - | chr8_4:15016723-15016742 | Msa1315540:CDS | 25.0% |
| !! | AGATAACAGACTTTATTTGA+TGG | - | chr8_4:15016783-15016802 | Msa1315540:intron | 25.0% |
| ! | TTAATTAAATGTTGTGAAGC+AGG | - | chr8_4:15016845-15016864 | Msa1315540:intron | 25.0% |
| ! | AACTCTAATAAACTTTCAGT+TGG | + | chr8_4:15017475-15017494 | None:intergenic | 25.0% |
| !!! | ATGATTTTGGGTTTAGTTAT+TGG | - | chr8_4:15017531-15017550 | Msa1315540:CDS | 25.0% |
| ! | CTCATATTCTTCTTATTAAG+AGG | + | chr8_4:15017841-15017860 | None:intergenic | 25.0% |
| ! | CTCTTAATAAGAAGAATATG+AGG | - | chr8_4:15017839-15017858 | Msa1315540:CDS | 25.0% |
| ! | GAGGATGTAAAATTATACAA+AGG | - | chr8_4:15018183-15018202 | Msa1315540:intron | 25.0% |
| ! | CAATAATTACACAGATCATA+AGG | - | chr8_4:15018209-15018228 | Msa1315540:intron | 25.0% |
| ! | TTATAATCCTTGCATATATC+CGG | + | chr8_4:15018342-15018361 | None:intergenic | 25.0% |
| !!! | TGAATTTGCTTTGAAGTTAA+GGG | + | chr8_4:15018644-15018663 | None:intergenic | 25.0% |
| !!! | TTGAATTTGCTTTGAAGTTA+AGG | + | chr8_4:15018645-15018664 | None:intergenic | 25.0% |
| ! | ATCGTTTAATATTTATGGAC+AGG | - | chr8_4:15016644-15016663 | Msa1315540:three_prime_UTR | 25.0% |
| !!! | AAGTGATTTTAGAATGAGAA+AGG | - | chr8_4:15016723-15016742 | Msa1315540:CDS | 25.0% |
| !! | AGATAACAGACTTTATTTGA+TGG | - | chr8_4:15016783-15016802 | Msa1315540:intron | 25.0% |
| ! | TTAATTAAATGTTGTGAAGC+AGG | - | chr8_4:15016845-15016864 | Msa1315540:intron | 25.0% |
| ! | AACTCTAATAAACTTTCAGT+TGG | + | chr8_4:15017475-15017494 | None:intergenic | 25.0% |
| !!! | ATGATTTTGGGTTTAGTTAT+TGG | - | chr8_4:15017531-15017550 | Msa1315540:CDS | 25.0% |
| ! | CTCATATTCTTCTTATTAAG+AGG | + | chr8_4:15017841-15017860 | None:intergenic | 25.0% |
| ! | CTCTTAATAAGAAGAATATG+AGG | - | chr8_4:15017839-15017858 | Msa1315540:CDS | 25.0% |
| ! | GAGGATGTAAAATTATACAA+AGG | - | chr8_4:15018183-15018202 | Msa1315540:intron | 25.0% |
| ! | CAATAATTACACAGATCATA+AGG | - | chr8_4:15018209-15018228 | Msa1315540:intron | 25.0% |
| ! | TTATAATCCTTGCATATATC+CGG | + | chr8_4:15018342-15018361 | None:intergenic | 25.0% |
| !!! | TGAATTTGCTTTGAAGTTAA+GGG | + | chr8_4:15018644-15018663 | None:intergenic | 25.0% |
| !!! | TTGAATTTGCTTTGAAGTTA+AGG | + | chr8_4:15018645-15018664 | None:intergenic | 25.0% |
| AACCATTTCTTGAAATGAAC+AGG | - | chr8_4:15016691-15016710 | Msa1315540:exon | 30.0% | |
| TCTAACTATAAATATAGGCG+TGG | + | chr8_4:15016766-15016785 | None:intergenic | 30.0% | |
| CTGAAAGGTCATATTGAAAT+AGG | - | chr8_4:15016894-15016913 | Msa1315540:intron | 30.0% | |
| AAAGGTCATATTGAAATAGG+AGG | - | chr8_4:15016897-15016916 | Msa1315540:CDS | 30.0% | |
| ATATTGAAATAGGAGGCAAA+TGG | - | chr8_4:15016904-15016923 | Msa1315540:CDS | 30.0% | |
| TAAGCTTGGTAAATCACTTT+AGG | - | chr8_4:15016970-15016989 | Msa1315540:CDS | 30.0% | |
| AGGGAAATTAGCAAAGAATT+AGG | - | chr8_4:15017125-15017144 | Msa1315540:CDS | 30.0% | |
| GGGAAATTAGCAAAGAATTA+GGG | - | chr8_4:15017126-15017145 | Msa1315540:CDS | 30.0% | |
| ! | ACTTACTCTAAAAGCCAATT+AGG | + | chr8_4:15017169-15017188 | None:intergenic | 30.0% |
| AACCCAAAATCATGTAAAGA+CGG | + | chr8_4:15017524-15017543 | None:intergenic | 30.0% | |
| GTCGCTAAATATTAATGTAG+AGG | + | chr8_4:15017571-15017590 | None:intergenic | 30.0% | |
| GTTACTTCTCAATTTGATTC+AGG | - | chr8_4:15017598-15017617 | Msa1315540:CDS | 30.0% | |
| TATTAGTATGGAAGATTCTG+AGG | - | chr8_4:15017640-15017659 | Msa1315540:CDS | 30.0% | |
| TATACATACCTTGTTCAGTT+TGG | + | chr8_4:15017685-15017704 | None:intergenic | 30.0% | |
| GTACAAAGAAATAAATGCAG+AGG | + | chr8_4:15017756-15017775 | None:intergenic | 30.0% | |
| AAAATGAAAGCTAGGTTTCT+TGG | + | chr8_4:15018013-15018032 | None:intergenic | 30.0% | |
| GGATATATGCAAGGATTATA+AGG | - | chr8_4:15018341-15018360 | Msa1315540:intron | 30.0% | |
| CATTTGTAGAAATCCATTTG+TGG | - | chr8_4:15018560-15018579 | Msa1315540:intron | 30.0% | |
| AGTTACGCATAATTAAAAGG+GGG | + | chr8_4:15018694-15018713 | None:intergenic | 30.0% | |
| GAGTTACGCATAATTAAAAG+GGG | + | chr8_4:15018695-15018714 | None:intergenic | 30.0% | |
| GGAGTTACGCATAATTAAAA+GGG | + | chr8_4:15018696-15018715 | None:intergenic | 30.0% | |
| AGGAGTTACGCATAATTAAA+AGG | + | chr8_4:15018697-15018716 | None:intergenic | 30.0% | |
| AAAATAGTCATTGATCGTAC+TGG | + | chr8_4:15018842-15018861 | None:intergenic | 30.0% | |
| !!! | CAATGACTATTTTTGCTTCT+TGG | - | chr8_4:15018849-15018868 | Msa1315540:intron | 30.0% |
| TAAATGGGAAAACAAAAGAG+AGG | + | chr8_4:15018889-15018908 | None:intergenic | 30.0% | |
| ! | CATGTGCTTTGAACTTAAAT+GGG | + | chr8_4:15018904-15018923 | None:intergenic | 30.0% |
| AACCATTTCTTGAAATGAAC+AGG | - | chr8_4:15016691-15016710 | Msa1315540:exon | 30.0% | |
| TCTAACTATAAATATAGGCG+TGG | + | chr8_4:15016766-15016785 | None:intergenic | 30.0% | |
| CTGAAAGGTCATATTGAAAT+AGG | - | chr8_4:15016894-15016913 | Msa1315540:intron | 30.0% | |
| AAAGGTCATATTGAAATAGG+AGG | - | chr8_4:15016897-15016916 | Msa1315540:CDS | 30.0% | |
| ATATTGAAATAGGAGGCAAA+TGG | - | chr8_4:15016904-15016923 | Msa1315540:CDS | 30.0% | |
| TAAGCTTGGTAAATCACTTT+AGG | - | chr8_4:15016970-15016989 | Msa1315540:CDS | 30.0% | |
| AGGGAAATTAGCAAAGAATT+AGG | - | chr8_4:15017125-15017144 | Msa1315540:CDS | 30.0% | |
| GGGAAATTAGCAAAGAATTA+GGG | - | chr8_4:15017126-15017145 | Msa1315540:CDS | 30.0% | |
| ! | ACTTACTCTAAAAGCCAATT+AGG | + | chr8_4:15017169-15017188 | None:intergenic | 30.0% |
| AACCCAAAATCATGTAAAGA+CGG | + | chr8_4:15017524-15017543 | None:intergenic | 30.0% | |
| GTCGCTAAATATTAATGTAG+AGG | + | chr8_4:15017571-15017590 | None:intergenic | 30.0% | |
| GTTACTTCTCAATTTGATTC+AGG | - | chr8_4:15017598-15017617 | Msa1315540:CDS | 30.0% | |
| TATTAGTATGGAAGATTCTG+AGG | - | chr8_4:15017640-15017659 | Msa1315540:CDS | 30.0% | |
| TATACATACCTTGTTCAGTT+TGG | + | chr8_4:15017685-15017704 | None:intergenic | 30.0% | |
| GTACAAAGAAATAAATGCAG+AGG | + | chr8_4:15017756-15017775 | None:intergenic | 30.0% | |
| AAAATGAAAGCTAGGTTTCT+TGG | + | chr8_4:15018013-15018032 | None:intergenic | 30.0% | |
| GGATATATGCAAGGATTATA+AGG | - | chr8_4:15018341-15018360 | Msa1315540:intron | 30.0% | |
| CATTTGTAGAAATCCATTTG+TGG | - | chr8_4:15018560-15018579 | Msa1315540:intron | 30.0% | |
| AGTTACGCATAATTAAAAGG+GGG | + | chr8_4:15018694-15018713 | None:intergenic | 30.0% | |
| GAGTTACGCATAATTAAAAG+GGG | + | chr8_4:15018695-15018714 | None:intergenic | 30.0% | |
| GGAGTTACGCATAATTAAAA+GGG | + | chr8_4:15018696-15018715 | None:intergenic | 30.0% | |
| AGGAGTTACGCATAATTAAA+AGG | + | chr8_4:15018697-15018716 | None:intergenic | 30.0% | |
| AAAATAGTCATTGATCGTAC+TGG | + | chr8_4:15018842-15018861 | None:intergenic | 30.0% | |
| !!! | CAATGACTATTTTTGCTTCT+TGG | - | chr8_4:15018849-15018868 | Msa1315540:intron | 30.0% |
| TAAATGGGAAAACAAAAGAG+AGG | + | chr8_4:15018889-15018908 | None:intergenic | 30.0% | |
| ! | CATGTGCTTTGAACTTAAAT+GGG | + | chr8_4:15018904-15018923 | None:intergenic | 30.0% |
| GACCTGTTCATTTCAAGAAA+TGG | + | chr8_4:15016696-15016715 | None:intergenic | 35.0% | |
| AACTATAAATATAGGCGTGG+TGG | + | chr8_4:15016763-15016782 | None:intergenic | 35.0% | |
| !! | AGACTTTATTTGATGGTGCA+TGG | - | chr8_4:15016790-15016809 | Msa1315540:intron | 35.0% |
| !! | GACTTTATTTGATGGTGCAT+GGG | - | chr8_4:15016791-15016810 | Msa1315540:intron | 35.0% |
| ! | CAAATTTTATGGGAGCTGAA+AGG | - | chr8_4:15016879-15016898 | Msa1315540:intron | 35.0% |
| ! | CTTGGTAAATCACTTTAGGA+GGG | - | chr8_4:15016974-15016993 | Msa1315540:CDS | 35.0% |
| AATGGGGACTCATTAAATGT+TGG | + | chr8_4:15017071-15017090 | None:intergenic | 35.0% | |
| CACTCTTTGGTTAAGTACTT+TGG | - | chr8_4:15017102-15017121 | Msa1315540:CDS | 35.0% | |
| TCTTTGGTTAAGTACTTTGG+AGG | - | chr8_4:15017105-15017124 | Msa1315540:CDS | 35.0% | |
| CTTTGGTTAAGTACTTTGGA+GGG | - | chr8_4:15017106-15017125 | Msa1315540:CDS | 35.0% | |
| GAAACCTAACTAACCTGAAT+CGG | + | chr8_4:15017308-15017327 | None:intergenic | 35.0% | |
| TCAGTTAAGCGAATAAAAGC+AGG | + | chr8_4:15017394-15017413 | None:intergenic | 35.0% | |
| ! | GATACAATGTGATTTTGCAG+TGG | + | chr8_4:15017501-15017520 | None:intergenic | 35.0% |
| ! | ATCCCGTCTTTACATGATTT+TGG | - | chr8_4:15017518-15017537 | Msa1315540:CDS | 35.0% |
| ! | TCCCGTCTTTACATGATTTT+GGG | - | chr8_4:15017519-15017538 | Msa1315540:CDS | 35.0% |
| ACCCAAAATCATGTAAAGAC+GGG | + | chr8_4:15017523-15017542 | None:intergenic | 35.0% | |
| GAAGACTCAAAATGAAAGCT+AGG | + | chr8_4:15018021-15018040 | None:intergenic | 35.0% | |
| AATTACACAGATCATAAGGC+TGG | - | chr8_4:15018213-15018232 | Msa1315540:intron | 35.0% | |
| AGCAAGATTTGATTATCAGC+CGG | - | chr8_4:15018320-15018339 | Msa1315540:intron | 35.0% | |
| TGCAAGGATTATAAGGAAAC+TGG | - | chr8_4:15018348-15018367 | Msa1315540:intron | 35.0% | |
| TATAAGGAAACTGGTTACTG+TGG | - | chr8_4:15018357-15018376 | Msa1315540:intron | 35.0% | |
| ATAAGGAAACTGGTTACTGT+GGG | - | chr8_4:15018358-15018377 | Msa1315540:intron | 35.0% | |
| TGTAAGTTTATGCATGATCG+AGG | - | chr8_4:15018393-15018412 | Msa1315540:intron | 35.0% | |
| ATCGAGGTGATTACAAATCT+GGG | - | chr8_4:15018409-15018428 | Msa1315540:intron | 35.0% | |
| CTACAAATGAAACACGCAAA+TGG | + | chr8_4:15018549-15018568 | None:intergenic | 35.0% | |
| ATGATGCTGCAAGTAAAATG+AGG | + | chr8_4:15018717-15018736 | None:intergenic | 35.0% | |
| ACATTAAAAATGCCAAGCGT+AGG | + | chr8_4:15018773-15018792 | None:intergenic | 35.0% | |
| ! | TACGCTTGGCATTTTTAATG+TGG | - | chr8_4:15018772-15018791 | Msa1315540:intron | 35.0% |
| TCATGAGATTCGAAAGAAGA+TGG | - | chr8_4:15018796-15018815 | Msa1315540:intron | 35.0% | |
| !!! | TGACTATTTTTGCTTCTTGG+AGG | - | chr8_4:15018852-15018871 | Msa1315540:intron | 35.0% |
| GACCTGTTCATTTCAAGAAA+TGG | + | chr8_4:15016696-15016715 | None:intergenic | 35.0% | |
| AACTATAAATATAGGCGTGG+TGG | + | chr8_4:15016763-15016782 | None:intergenic | 35.0% | |
| !! | AGACTTTATTTGATGGTGCA+TGG | - | chr8_4:15016790-15016809 | Msa1315540:intron | 35.0% |
| !! | GACTTTATTTGATGGTGCAT+GGG | - | chr8_4:15016791-15016810 | Msa1315540:intron | 35.0% |
| ! | CAAATTTTATGGGAGCTGAA+AGG | - | chr8_4:15016879-15016898 | Msa1315540:intron | 35.0% |
| ! | CTTGGTAAATCACTTTAGGA+GGG | - | chr8_4:15016974-15016993 | Msa1315540:CDS | 35.0% |
| AATGGGGACTCATTAAATGT+TGG | + | chr8_4:15017071-15017090 | None:intergenic | 35.0% | |
| CACTCTTTGGTTAAGTACTT+TGG | - | chr8_4:15017102-15017121 | Msa1315540:CDS | 35.0% | |
| TCTTTGGTTAAGTACTTTGG+AGG | - | chr8_4:15017105-15017124 | Msa1315540:CDS | 35.0% | |
| CTTTGGTTAAGTACTTTGGA+GGG | - | chr8_4:15017106-15017125 | Msa1315540:CDS | 35.0% | |
| GAAACCTAACTAACCTGAAT+CGG | + | chr8_4:15017308-15017327 | None:intergenic | 35.0% | |
| TCAGTTAAGCGAATAAAAGC+AGG | + | chr8_4:15017394-15017413 | None:intergenic | 35.0% | |
| ! | GATACAATGTGATTTTGCAG+TGG | + | chr8_4:15017501-15017520 | None:intergenic | 35.0% |
| ! | ATCCCGTCTTTACATGATTT+TGG | - | chr8_4:15017518-15017537 | Msa1315540:CDS | 35.0% |
| ! | TCCCGTCTTTACATGATTTT+GGG | - | chr8_4:15017519-15017538 | Msa1315540:CDS | 35.0% |
| ACCCAAAATCATGTAAAGAC+GGG | + | chr8_4:15017523-15017542 | None:intergenic | 35.0% | |
| GAAGACTCAAAATGAAAGCT+AGG | + | chr8_4:15018021-15018040 | None:intergenic | 35.0% | |
| AATTACACAGATCATAAGGC+TGG | - | chr8_4:15018213-15018232 | Msa1315540:intron | 35.0% | |
| AGCAAGATTTGATTATCAGC+CGG | - | chr8_4:15018320-15018339 | Msa1315540:intron | 35.0% | |
| TGCAAGGATTATAAGGAAAC+TGG | - | chr8_4:15018348-15018367 | Msa1315540:intron | 35.0% | |
| TATAAGGAAACTGGTTACTG+TGG | - | chr8_4:15018357-15018376 | Msa1315540:intron | 35.0% | |
| ATAAGGAAACTGGTTACTGT+GGG | - | chr8_4:15018358-15018377 | Msa1315540:intron | 35.0% | |
| TGTAAGTTTATGCATGATCG+AGG | - | chr8_4:15018393-15018412 | Msa1315540:intron | 35.0% | |
| ATCGAGGTGATTACAAATCT+GGG | - | chr8_4:15018409-15018428 | Msa1315540:intron | 35.0% | |
| CTACAAATGAAACACGCAAA+TGG | + | chr8_4:15018549-15018568 | None:intergenic | 35.0% | |
| ATGATGCTGCAAGTAAAATG+AGG | + | chr8_4:15018717-15018736 | None:intergenic | 35.0% | |
| ACATTAAAAATGCCAAGCGT+AGG | + | chr8_4:15018773-15018792 | None:intergenic | 35.0% | |
| ! | TACGCTTGGCATTTTTAATG+TGG | - | chr8_4:15018772-15018791 | Msa1315540:intron | 35.0% |
| TCATGAGATTCGAAAGAAGA+TGG | - | chr8_4:15018796-15018815 | Msa1315540:intron | 35.0% | |
| !!! | TGACTATTTTTGCTTCTTGG+AGG | - | chr8_4:15018852-15018871 | Msa1315540:intron | 35.0% |
| GCTTGGTAAATCACTTTAGG+AGG | - | chr8_4:15016973-15016992 | Msa1315540:CDS | 40.0% | |
| ! | ATCACTTTAGGAGGGAAATG+AGG | - | chr8_4:15016982-15017001 | Msa1315540:CDS | 40.0% |
| ! | AGAGTGCTTTGCAAGCTAAT+GGG | + | chr8_4:15017088-15017107 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTTGCAAGCTAA+TGG | + | chr8_4:15017089-15017108 | None:intergenic | 40.0% |
| !! | TTAGCTTGCAAAGCACTCTT+TGG | - | chr8_4:15017089-15017108 | Msa1315540:CDS | 40.0% |
| AGCCAATTGCTTGACCTAAT+TGG | - | chr8_4:15017152-15017171 | Msa1315540:CDS | 40.0% | |
| AGCCAATTAGGTCAAGCAAT+TGG | + | chr8_4:15017157-15017176 | None:intergenic | 40.0% | |
| ! | TTCTCCGATTCAGGTTAGTT+AGG | - | chr8_4:15017301-15017320 | Msa1315540:CDS | 40.0% |
| !!! | TGATTCAGGTTTTTTCGTCG+TGG | - | chr8_4:15017612-15017631 | Msa1315540:CDS | 40.0% |
| ! | TTGGTGATTTGCAGGAGATT+TGG | + | chr8_4:15017666-15017685 | None:intergenic | 40.0% |
| ! | TGTTCAGTTTGGTGATTTGC+AGG | + | chr8_4:15017674-15017693 | None:intergenic | 40.0% |
| GCAAATCACCAAACTGAACA+AGG | - | chr8_4:15017674-15017693 | Msa1315540:CDS | 40.0% | |
| AGCACTATTGAGAATGAGGA+TGG | - | chr8_4:15017868-15017887 | Msa1315540:CDS | 40.0% | |
| TTCTTCGTTCGGTTTAGCAT+AGG | + | chr8_4:15017989-15018008 | None:intergenic | 40.0% | |
| GGTTTCTTGGATTCTTCGTT+CGG | + | chr8_4:15018000-15018019 | None:intergenic | 40.0% | |
| CTTGCTTAAGAGCTCTTTCA+CGG | + | chr8_4:15018128-15018147 | None:intergenic | 40.0% | |
| GCAAACAATTGCCAGTGAAA+AGG | - | chr8_4:15018248-15018267 | Msa1315540:CDS | 40.0% | |
| TTATCAGCCGGATATATGCA+AGG | - | chr8_4:15018332-15018351 | Msa1315540:intron | 40.0% | |
| AAACTGGTTACTGTGGGTAT+GGG | - | chr8_4:15018364-15018383 | Msa1315540:intron | 40.0% | |
| GATCGAGGTGATTACAAATC+TGG | - | chr8_4:15018408-15018427 | Msa1315540:intron | 40.0% | |
| GCTTGGTAAATCACTTTAGG+AGG | - | chr8_4:15016973-15016992 | Msa1315540:CDS | 40.0% | |
| ! | ATCACTTTAGGAGGGAAATG+AGG | - | chr8_4:15016982-15017001 | Msa1315540:CDS | 40.0% |
| ! | AGAGTGCTTTGCAAGCTAAT+GGG | + | chr8_4:15017088-15017107 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTTGCAAGCTAA+TGG | + | chr8_4:15017089-15017108 | None:intergenic | 40.0% |
| !! | TTAGCTTGCAAAGCACTCTT+TGG | - | chr8_4:15017089-15017108 | Msa1315540:CDS | 40.0% |
| AGCCAATTGCTTGACCTAAT+TGG | - | chr8_4:15017152-15017171 | Msa1315540:CDS | 40.0% | |
| AGCCAATTAGGTCAAGCAAT+TGG | + | chr8_4:15017157-15017176 | None:intergenic | 40.0% | |
| ! | TTCTCCGATTCAGGTTAGTT+AGG | - | chr8_4:15017301-15017320 | Msa1315540:CDS | 40.0% |
| !!! | TGATTCAGGTTTTTTCGTCG+TGG | - | chr8_4:15017612-15017631 | Msa1315540:CDS | 40.0% |
| ! | TTGGTGATTTGCAGGAGATT+TGG | + | chr8_4:15017666-15017685 | None:intergenic | 40.0% |
| ! | TGTTCAGTTTGGTGATTTGC+AGG | + | chr8_4:15017674-15017693 | None:intergenic | 40.0% |
| GCAAATCACCAAACTGAACA+AGG | - | chr8_4:15017674-15017693 | Msa1315540:CDS | 40.0% | |
| AGCACTATTGAGAATGAGGA+TGG | - | chr8_4:15017868-15017887 | Msa1315540:CDS | 40.0% | |
| TTCTTCGTTCGGTTTAGCAT+AGG | + | chr8_4:15017989-15018008 | None:intergenic | 40.0% | |
| GGTTTCTTGGATTCTTCGTT+CGG | + | chr8_4:15018000-15018019 | None:intergenic | 40.0% | |
| CTTGCTTAAGAGCTCTTTCA+CGG | + | chr8_4:15018128-15018147 | None:intergenic | 40.0% | |
| GCAAACAATTGCCAGTGAAA+AGG | - | chr8_4:15018248-15018267 | Msa1315540:CDS | 40.0% | |
| TTATCAGCCGGATATATGCA+AGG | - | chr8_4:15018332-15018351 | Msa1315540:intron | 40.0% | |
| AAACTGGTTACTGTGGGTAT+GGG | - | chr8_4:15018364-15018383 | Msa1315540:intron | 40.0% | |
| GATCGAGGTGATTACAAATC+TGG | - | chr8_4:15018408-15018427 | Msa1315540:intron | 40.0% | |
| ! | ATAGGCGTGGTGGAAACAAA+AGG | + | chr8_4:15016753-15016772 | None:intergenic | 45.0% |
| CTGCATTTATTGCTGTCGTG+TGG | - | chr8_4:15016938-15016957 | Msa1315540:CDS | 45.0% | |
| ! | TGGTGTGTGTTGCAAGCTTT+TGG | + | chr8_4:15017051-15017070 | None:intergenic | 45.0% |
| GAGTGCTTTGCAAGCTAATG+GGG | + | chr8_4:15017087-15017106 | None:intergenic | 45.0% | |
| CAATTGCCAGCTTCATCGAT+CGG | - | chr8_4:15017214-15017233 | Msa1315540:CDS | 45.0% | |
| ! | GAAGTGGCTGAAGCTTTATG+CGG | + | chr8_4:15017244-15017263 | None:intergenic | 45.0% |
| CATAAAGCTTCAGCCACTTC+TGG | - | chr8_4:15017244-15017263 | Msa1315540:CDS | 45.0% | |
| !!! | TGGTTTTGATGCTCCAGAAG+TGG | + | chr8_4:15017260-15017279 | None:intergenic | 45.0% |
| CTGAATCGGAGAAGATGTGT+TGG | + | chr8_4:15017294-15017313 | None:intergenic | 45.0% | |
| CAACACATCTTCTCCGATTC+AGG | - | chr8_4:15017292-15017311 | Msa1315540:CDS | 45.0% | |
| GTCGTGGCAGCTTATTAGTA+TGG | - | chr8_4:15017628-15017647 | Msa1315540:CDS | 45.0% | |
| ! | GCGAAGCACTATTGAGAATG+AGG | - | chr8_4:15017864-15017883 | Msa1315540:CDS | 45.0% |
| ! | ATAGGCAGAGCTCTTTGAAG+AGG | + | chr8_4:15017971-15017990 | None:intergenic | 45.0% |
| TAGCAAAGCAACCGCAACTT+TGG | - | chr8_4:15018065-15018084 | Msa1315540:intron | 45.0% | |
| AGTCTCAGTCTCCAAAGTTG+CGG | + | chr8_4:15018079-15018098 | None:intergenic | 45.0% | |
| CTTAAGAGCTCTTTCACGGA+TGG | + | chr8_4:15018124-15018143 | None:intergenic | 45.0% | |
| AGGAAAGAGTAATCGTTCCG+AGG | - | chr8_4:15018164-15018183 | Msa1315540:intron | 45.0% | |
| ACAATTGCCAGTGAAAAGGC+TGG | - | chr8_4:15018252-15018271 | Msa1315540:CDS | 45.0% | |
| GAAACTGGTTACTGTGGGTA+TGG | - | chr8_4:15018363-15018382 | Msa1315540:intron | 45.0% | |
| AACTGGTTACTGTGGGTATG+GGG | - | chr8_4:15018365-15018384 | Msa1315540:intron | 45.0% | |
| GAGGTGATTACAAATCTGGG+TGG | - | chr8_4:15018412-15018431 | Msa1315540:intron | 45.0% | |
| TTACAAATCTGGGTGGCAGA+TGG | - | chr8_4:15018419-15018438 | Msa1315540:intron | 45.0% | |
| ATGAAGCTGAGAAAGCAAGG+AGG | - | chr8_4:15018454-15018473 | Msa1315540:intron | 45.0% | |
| GAAAGCAAGGAGGATGAGAT+TGG | - | chr8_4:15018464-15018483 | Msa1315540:intron | 45.0% | |
| GTTGAGACAGGATCCACAAA+TGG | + | chr8_4:15018576-15018595 | None:intergenic | 45.0% | |
| ACAGAAGTAGTGCTTGCACT+TGG | + | chr8_4:15018598-15018617 | None:intergenic | 45.0% | |
| ! | CTGTGAGCATTGTGCATTGA+AGG | - | chr8_4:15018614-15018633 | Msa1315540:intron | 45.0% |
| TAAAAATGCCAAGCGTAGGC+TGG | + | chr8_4:15018769-15018788 | None:intergenic | 45.0% | |
| GATTCGAAAGAAGATGGCTG+AGG | - | chr8_4:15018802-15018821 | Msa1315540:intron | 45.0% | |
| ! | ATAGGCGTGGTGGAAACAAA+AGG | + | chr8_4:15016753-15016772 | None:intergenic | 45.0% |
| CTGCATTTATTGCTGTCGTG+TGG | - | chr8_4:15016938-15016957 | Msa1315540:CDS | 45.0% | |
| ! | TGGTGTGTGTTGCAAGCTTT+TGG | + | chr8_4:15017051-15017070 | None:intergenic | 45.0% |
| GAGTGCTTTGCAAGCTAATG+GGG | + | chr8_4:15017087-15017106 | None:intergenic | 45.0% | |
| CAATTGCCAGCTTCATCGAT+CGG | - | chr8_4:15017214-15017233 | Msa1315540:CDS | 45.0% | |
| ! | GAAGTGGCTGAAGCTTTATG+CGG | + | chr8_4:15017244-15017263 | None:intergenic | 45.0% |
| CATAAAGCTTCAGCCACTTC+TGG | - | chr8_4:15017244-15017263 | Msa1315540:CDS | 45.0% | |
| !!! | TGGTTTTGATGCTCCAGAAG+TGG | + | chr8_4:15017260-15017279 | None:intergenic | 45.0% |
| CTGAATCGGAGAAGATGTGT+TGG | + | chr8_4:15017294-15017313 | None:intergenic | 45.0% | |
| CAACACATCTTCTCCGATTC+AGG | - | chr8_4:15017292-15017311 | Msa1315540:CDS | 45.0% | |
| GTCGTGGCAGCTTATTAGTA+TGG | - | chr8_4:15017628-15017647 | Msa1315540:CDS | 45.0% | |
| ! | GCGAAGCACTATTGAGAATG+AGG | - | chr8_4:15017864-15017883 | Msa1315540:CDS | 45.0% |
| ! | ATAGGCAGAGCTCTTTGAAG+AGG | + | chr8_4:15017971-15017990 | None:intergenic | 45.0% |
| TAGCAAAGCAACCGCAACTT+TGG | - | chr8_4:15018065-15018084 | Msa1315540:intron | 45.0% | |
| AGTCTCAGTCTCCAAAGTTG+CGG | + | chr8_4:15018079-15018098 | None:intergenic | 45.0% | |
| CTTAAGAGCTCTTTCACGGA+TGG | + | chr8_4:15018124-15018143 | None:intergenic | 45.0% | |
| AGGAAAGAGTAATCGTTCCG+AGG | - | chr8_4:15018164-15018183 | Msa1315540:intron | 45.0% | |
| ACAATTGCCAGTGAAAAGGC+TGG | - | chr8_4:15018252-15018271 | Msa1315540:CDS | 45.0% | |
| GAAACTGGTTACTGTGGGTA+TGG | - | chr8_4:15018363-15018382 | Msa1315540:intron | 45.0% | |
| AACTGGTTACTGTGGGTATG+GGG | - | chr8_4:15018365-15018384 | Msa1315540:intron | 45.0% | |
| GAGGTGATTACAAATCTGGG+TGG | - | chr8_4:15018412-15018431 | Msa1315540:intron | 45.0% | |
| TTACAAATCTGGGTGGCAGA+TGG | - | chr8_4:15018419-15018438 | Msa1315540:intron | 45.0% | |
| ATGAAGCTGAGAAAGCAAGG+AGG | - | chr8_4:15018454-15018473 | Msa1315540:intron | 45.0% | |
| GAAAGCAAGGAGGATGAGAT+TGG | - | chr8_4:15018464-15018483 | Msa1315540:intron | 45.0% | |
| GTTGAGACAGGATCCACAAA+TGG | + | chr8_4:15018576-15018595 | None:intergenic | 45.0% | |
| ACAGAAGTAGTGCTTGCACT+TGG | + | chr8_4:15018598-15018617 | None:intergenic | 45.0% | |
| ! | CTGTGAGCATTGTGCATTGA+AGG | - | chr8_4:15018614-15018633 | Msa1315540:intron | 45.0% |
| TAAAAATGCCAAGCGTAGGC+TGG | + | chr8_4:15018769-15018788 | None:intergenic | 45.0% | |
| GATTCGAAAGAAGATGGCTG+AGG | - | chr8_4:15018802-15018821 | Msa1315540:intron | 45.0% | |
| ! | TGTGGCTTGTGTGGTAAGCT+TGG | - | chr8_4:15016956-15016975 | Msa1315540:CDS | 50.0% |
| GGTATACCGATCGATGAAGC+TGG | + | chr8_4:15017223-15017242 | None:intergenic | 50.0% | |
| GCATCAAAACCAAGTTGCCG+CGG | - | chr8_4:15017268-15017287 | Msa1315540:CDS | 50.0% | |
| TGAGGATGGCTCGAACAATG+AGG | - | chr8_4:15017882-15017901 | Msa1315540:CDS | 50.0% | |
| CAAGCGACAGAGAGTCTCAA+AGG | - | chr8_4:15018144-15018163 | Msa1315540:intron | 50.0% | |
| ATTGCCAGTGAAAAGGCTGG+TGG | - | chr8_4:15018255-15018274 | Msa1315540:CDS | 50.0% | |
| TTGCCAGTGAAAAGGCTGGT+GGG | - | chr8_4:15018256-15018275 | Msa1315540:CDS | 50.0% | |
| GTGGCAGATGGAGAAGGAAT+GGG | - | chr8_4:15018431-15018450 | Msa1315540:intron | 50.0% | |
| GGGATGAAGCTGAGAAAGCA+AGG | - | chr8_4:15018451-15018470 | Msa1315540:intron | 50.0% | |
| TGCTTGCACTTGGTTGAGAC+AGG | + | chr8_4:15018588-15018607 | None:intergenic | 50.0% | |
| ! | TGTGGCTTGTGTGGTAAGCT+TGG | - | chr8_4:15016956-15016975 | Msa1315540:CDS | 50.0% |
| GGTATACCGATCGATGAAGC+TGG | + | chr8_4:15017223-15017242 | None:intergenic | 50.0% | |
| GCATCAAAACCAAGTTGCCG+CGG | - | chr8_4:15017268-15017287 | Msa1315540:CDS | 50.0% | |
| TGAGGATGGCTCGAACAATG+AGG | - | chr8_4:15017882-15017901 | Msa1315540:CDS | 50.0% | |
| CAAGCGACAGAGAGTCTCAA+AGG | - | chr8_4:15018144-15018163 | Msa1315540:intron | 50.0% | |
| ATTGCCAGTGAAAAGGCTGG+TGG | - | chr8_4:15018255-15018274 | Msa1315540:CDS | 50.0% | |
| TTGCCAGTGAAAAGGCTGGT+GGG | - | chr8_4:15018256-15018275 | Msa1315540:CDS | 50.0% | |
| GTGGCAGATGGAGAAGGAAT+GGG | - | chr8_4:15018431-15018450 | Msa1315540:intron | 50.0% | |
| GGGATGAAGCTGAGAAAGCA+AGG | - | chr8_4:15018451-15018470 | Msa1315540:intron | 50.0% | |
| TGCTTGCACTTGGTTGAGAC+AGG | + | chr8_4:15018588-15018607 | None:intergenic | 50.0% | |
| ! | TTGCTGTCGTGTGGCTTGTG+TGG | - | chr8_4:15016947-15016966 | Msa1315540:CDS | 55.0% |
| ! | AGAGCTCTTTGAAGAGGCGG+TGG | + | chr8_4:15017965-15017984 | None:intergenic | 55.0% |
| ! | GGCAGAGCTCTTTGAAGAGG+CGG | + | chr8_4:15017968-15017987 | None:intergenic | 55.0% |
| ! | TGACCCACCAGCCTTTTCAC+TGG | + | chr8_4:15018262-15018281 | None:intergenic | 55.0% |
| ! | GAAAAGGCTGGTGGGTCACA+CGG | - | chr8_4:15018264-15018283 | Msa1315540:intron | 55.0% |
| ATGTGAGCTGAAGCCCGAAG+AGG | + | chr8_4:15018291-15018310 | None:intergenic | 55.0% | |
| ATCTGGGTGGCAGATGGAGA+AGG | - | chr8_4:15018425-15018444 | Msa1315540:intron | 55.0% | |
| GGTGGCAGATGGAGAAGGAA+TGG | - | chr8_4:15018430-15018449 | Msa1315540:intron | 55.0% | |
| ! | AGGAGGATGAGATTGGCTGC+AGG | - | chr8_4:15018471-15018490 | Msa1315540:intron | 55.0% |
| ! | GATGAGATTGGCTGCAGGTG+AGG | - | chr8_4:15018476-15018495 | Msa1315540:intron | 55.0% |
| TGCAGGTGAGGATGCAGAAG+AGG | - | chr8_4:15018488-15018507 | Msa1315540:intron | 55.0% | |
| AGGTGAGGATGCAGAAGAGG+AGG | - | chr8_4:15018491-15018510 | Msa1315540:intron | 55.0% | |
| GGTGAGGATGCAGAAGAGGA+GGG | - | chr8_4:15018492-15018511 | Msa1315540:intron | 55.0% | |
| ! | TTGCTGTCGTGTGGCTTGTG+TGG | - | chr8_4:15016947-15016966 | Msa1315540:CDS | 55.0% |
| ! | AGAGCTCTTTGAAGAGGCGG+TGG | + | chr8_4:15017965-15017984 | None:intergenic | 55.0% |
| ! | GGCAGAGCTCTTTGAAGAGG+CGG | + | chr8_4:15017968-15017987 | None:intergenic | 55.0% |
| ! | TGACCCACCAGCCTTTTCAC+TGG | + | chr8_4:15018262-15018281 | None:intergenic | 55.0% |
| ! | GAAAAGGCTGGTGGGTCACA+CGG | - | chr8_4:15018264-15018283 | Msa1315540:intron | 55.0% |
| ATGTGAGCTGAAGCCCGAAG+AGG | + | chr8_4:15018291-15018310 | None:intergenic | 55.0% | |
| ATCTGGGTGGCAGATGGAGA+AGG | - | chr8_4:15018425-15018444 | Msa1315540:intron | 55.0% | |
| GGTGGCAGATGGAGAAGGAA+TGG | - | chr8_4:15018430-15018449 | Msa1315540:intron | 55.0% | |
| ! | AGGAGGATGAGATTGGCTGC+AGG | - | chr8_4:15018471-15018490 | Msa1315540:intron | 55.0% |
| ! | GATGAGATTGGCTGCAGGTG+AGG | - | chr8_4:15018476-15018495 | Msa1315540:intron | 55.0% |
| TGCAGGTGAGGATGCAGAAG+AGG | - | chr8_4:15018488-15018507 | Msa1315540:intron | 55.0% | |
| AGGTGAGGATGCAGAAGAGG+AGG | - | chr8_4:15018491-15018510 | Msa1315540:intron | 55.0% | |
| GGTGAGGATGCAGAAGAGGA+GGG | - | chr8_4:15018492-15018511 | Msa1315540:intron | 55.0% | |
| ! | ATGTGTTGGCCGCGGCAACT+TGG | + | chr8_4:15017280-15017299 | None:intergenic | 60.0% |
| ! | CGGAGAAGATGTGTTGGCCG+CGG | + | chr8_4:15017288-15017307 | None:intergenic | 60.0% |
| GTGGGTCACACGGTCCTCTT+CGG | - | chr8_4:15018274-15018293 | Msa1315540:intron | 60.0% | |
| TGGGTCACACGGTCCTCTTC+GGG | - | chr8_4:15018275-15018294 | Msa1315540:intron | 60.0% | |
| GTCTGCAACCAGCCTACGCT+TGG | - | chr8_4:15018758-15018777 | Msa1315540:intron | 60.0% | |
| ! | ATGTGTTGGCCGCGGCAACT+TGG | + | chr8_4:15017280-15017299 | None:intergenic | 60.0% |
| ! | CGGAGAAGATGTGTTGGCCG+CGG | + | chr8_4:15017288-15017307 | None:intergenic | 60.0% |
| GTGGGTCACACGGTCCTCTT+CGG | - | chr8_4:15018274-15018293 | Msa1315540:intron | 60.0% | |
| TGGGTCACACGGTCCTCTTC+GGG | - | chr8_4:15018275-15018294 | Msa1315540:intron | 60.0% | |
| GTCTGCAACCAGCCTACGCT+TGG | - | chr8_4:15018758-15018777 | Msa1315540:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 15016609 | 15018923 | 15016609 | ID=Msa1315540;Name=Msa1315540 |
| chr8_4 | mRNA | 15016609 | 15018923 | 15016609 | ID=Msa1315540-mRNA-1;Parent=Msa1315540;Name=Msa1315540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.4|0.6|1|1|5|91|369 |
| chr8_4 | exon | 15016609 | 15016801 | 15016609 | ID=Msa1315540-mRNA-1:exon:5718;Parent=Msa1315540-mRNA-1 |
| chr8_4 | exon | 15016897 | 15017714 | 15016897 | ID=Msa1315540-mRNA-1:exon:5717;Parent=Msa1315540-mRNA-1 |
| chr8_4 | exon | 15017837 | 15017912 | 15017837 | ID=Msa1315540-mRNA-1:exon:5716;Parent=Msa1315540-mRNA-1 |
| chr8_4 | exon | 15018219 | 15018275 | 15018219 | ID=Msa1315540-mRNA-1:exon:5715;Parent=Msa1315540-mRNA-1 |
| chr8_4 | exon | 15018867 | 15018923 | 15018867 | ID=Msa1315540-mRNA-1:exon:5714;Parent=Msa1315540-mRNA-1 |
| chr8_4 | CDS | 15018867 | 15018923 | 15018867 | ID=Msa1315540-mRNA-1:cds;Parent=Msa1315540-mRNA-1 |
| chr8_4 | CDS | 15018219 | 15018275 | 15018219 | ID=Msa1315540-mRNA-1:cds;Parent=Msa1315540-mRNA-1 |
| chr8_4 | CDS | 15017837 | 15017912 | 15017837 | ID=Msa1315540-mRNA-1:cds;Parent=Msa1315540-mRNA-1 |
| chr8_4 | CDS | 15016897 | 15017714 | 15016897 | ID=Msa1315540-mRNA-1:cds;Parent=Msa1315540-mRNA-1 |
| chr8_4 | CDS | 15016700 | 15016801 | 15016700 | ID=Msa1315540-mRNA-1:cds;Parent=Msa1315540-mRNA-1 |
| chr8_4 | three_prime_UTR | 15016609 | 15016699 | 15016609 | ID=Msa1315540-mRNA-1:three_prime_utr;Parent=Msa1315540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
