AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1315910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315910 MtrunA17_Chr8g0345671 87.407 405 45 2 1 404 1 400 0.0 713
Msa1315910 MtrunA17_Chr8g0345691 63.387 437 107 7 1 402 1 419 0.0 515
Msa1315910 MtrunA17_Chr8g0345731 65.132 152 48 3 8 154 22 173 2.11e-65 206
Msa1315910 MtrunA17_Chr8g0345711 62.987 154 54 2 1 151 1 154 1.35e-64 204
Msa1315910 MtrunA17_Chr8g0345721 56.000 175 48 1 1 146 26 200 8.43e-61 196
Msa1315910 MtrunA17_Chr8g0345741 64.493 138 49 0 21 158 2 139 4.11e-60 192
Msa1315910 MtrunA17_Chr3g0128111 55.030 169 63 6 13 175 45 206 1.73e-52 175
Msa1315910 MtrunA17_Chr5g0428991 57.233 159 59 4 8 160 23 178 9.36e-52 183
Msa1315910 MtrunA17_Chr3g0128151 55.556 162 63 5 8 163 20 178 5.07e-51 180
Msa1315910 MtrunA17_Chr8g0345701 56.291 151 48 5 10 146 7 153 1.39e-47 160
Msa1315910 MtrunA17_Chr6g0481091 52.597 154 64 5 10 157 6 156 1.06e-44 155
Msa1315910 MtrunA17_Chr2g0309891 48.795 166 72 5 10 165 6 168 1.27e-43 155
Msa1315910 MtrunA17_Chr5g0400461 49.398 166 71 5 10 165 6 168 1.06e-42 152
Msa1315910 MtrunA17_Chr5g0433781 51.613 155 66 4 10 158 6 157 1.57e-42 157
Msa1315910 MtrunA17_Chr3g0109821 45.274 201 97 7 10 201 6 202 2.09e-42 157
Msa1315910 MtrunA17_Chr1g0197361 51.656 151 66 3 13 158 11 159 6.99e-41 152
Msa1315910 MtrunA17_Chr7g0252971 42.708 192 81 7 6 175 4 188 1.03e-40 147
Msa1315910 MtrunA17_Chr2g0318101 42.289 201 108 6 10 209 15 208 1.78e-40 147
Msa1315910 MtrunA17_Chr4g0054791 41.232 211 103 6 10 202 6 213 6.38e-40 144
Msa1315910 MtrunA17_Chr4g0047841 48.276 145 71 3 6 149 11 152 6.80e-39 142
Msa1315910 MtrunA17_Chr3g0130731 48.750 160 67 6 10 160 7 160 3.49e-38 139
Msa1315910 MtrunA17_Chr3g0139331 49.020 153 71 5 10 158 11 160 7.09e-38 140
Msa1315910 MtrunA17_Chr7g0214071 44.242 165 82 4 10 170 15 173 1.46e-37 136
Msa1315910 MtrunA17_Chr5g0398971 43.429 175 89 6 3 171 2 172 1.52e-37 139
Msa1315910 MtrunA17_Chr4g0018391 47.205 161 73 7 3 157 2 156 2.65e-37 138
Msa1315910 MtrunA17_Chr3g0130101 47.020 151 71 5 13 157 10 157 2.76e-37 138
Msa1315910 MtrunA17_Chr3g0092671 49.677 155 71 3 9 158 4 156 4.43e-37 141
Msa1315910 MtrunA17_Chr2g0321741 35.517 290 156 12 31 304 13 287 5.23e-37 137
Msa1315910 MtrunA17_Chr8g0384721 44.848 165 67 6 10 160 7 161 9.67e-37 135
Msa1315910 MtrunA17_Chr3g0124761 46.497 157 69 5 10 157 7 157 1.03e-36 135
Msa1315910 MtrunA17_Chr2g0318081 46.835 158 65 6 10 157 16 164 1.20e-36 137
Msa1315910 MtrunA17_Chr8g0385991 44.231 156 71 4 10 154 14 164 3.83e-36 132
Msa1315910 MtrunA17_Chr4g0042561 45.679 162 65 6 10 157 9 161 5.61e-36 132
Msa1315910 MtrunA17_Chr4g0017921 48.026 152 72 5 10 157 8 156 6.87e-36 134
Msa1315910 MtrunA17_Chr6g0484441 45.963 161 76 6 10 164 5 160 7.22e-36 134
Msa1315910 MtrunA17_Chr4g0056541 45.000 160 78 6 3 157 2 156 8.53e-36 134
Msa1315910 MtrunA17_Chr2g0316971 53.077 130 57 3 9 137 22 148 1.90e-35 134
Msa1315910 MtrunA17_Chr1g0197351 48.408 157 66 4 13 157 45 198 2.86e-35 135
Msa1315910 MtrunA17_Chr1g0147421 45.752 153 77 4 10 158 27 177 4.81e-35 132
Msa1315910 MtrunA17_Chr8g0359921 44.311 167 72 6 10 164 14 171 4.94e-35 132
Msa1315910 MtrunA17_Chr8g0364791 43.046 151 77 4 13 157 9 156 1.03e-34 133
Msa1315910 MtrunA17_Chr8g0372121 42.169 166 85 6 10 167 6 168 1.18e-34 130
Msa1315910 MtrunA17_Chr2g0309331 35.686 255 138 10 10 241 10 261 1.81e-34 130
Msa1315910 MtrunA17_Chr3g0091921 46.497 157 71 6 10 158 16 167 1.91e-34 129
Msa1315910 MtrunA17_Chr2g0326361 43.210 162 71 5 11 158 15 169 2.37e-34 130
Msa1315910 MtrunA17_Chr5g0405211 45.455 154 74 6 10 157 8 157 5.52e-34 129
Msa1315910 MtrunA17_Chr1g0183741 44.872 156 79 5 10 163 10 160 5.72e-34 127
Msa1315910 MtrunA17_Chr4g0076731 44.937 158 75 6 7 158 51 202 5.84e-34 131
Msa1315910 MtrunA17_Chr4g0060931 46.012 163 73 8 10 162 17 174 7.88e-34 129
Msa1315910 MtrunA17_Chr8g0361731 40.994 161 77 4 13 158 17 174 9.15e-34 130
Msa1315910 MtrunA17_Chr7g0263931 40.244 164 83 6 6 157 5 165 2.57e-33 127
Msa1315910 MtrunA17_Chr5g0417791 42.442 172 76 7 10 167 3 165 2.87e-33 125
Msa1315910 MtrunA17_Chr7g0261411 44.218 147 77 4 10 154 10 153 2.89e-33 126
Msa1315910 MtrunA17_Chr1g0200561 43.506 154 77 6 10 157 19 168 3.49e-33 127
Msa1315910 MtrunA17_Chr3g0144271 48.529 136 65 3 10 142 23 156 1.05e-32 127
Msa1315910 MtrunA17_Chr1g0201021 51.034 145 62 5 13 156 22 158 1.12e-32 129
Msa1315910 MtrunA17_Chr2g0312321 43.226 155 74 5 10 157 11 158 1.52e-32 124
Msa1315910 MtrunA17_Chr7g0217721 53.543 127 53 5 12 137 21 142 3.19e-32 124
Msa1315910 MtrunA17_Chr4g0026141 42.581 155 77 4 11 154 6 159 4.99e-32 122
Msa1315910 MtrunA17_Chr7g0217711 52.756 127 54 5 12 137 21 142 6.81e-32 119
Msa1315910 MtrunA17_Chr7g0253011 48.092 131 62 4 10 137 17 144 1.11e-31 124
Msa1315910 MtrunA17_Chr8g0384201 41.060 151 80 4 13 157 9 156 1.32e-31 125
Msa1315910 MtrunA17_Chr6g0453451 45.752 153 71 5 10 161 20 161 1.55e-31 122
Msa1315910 MtrunA17_Chr5g0417001 39.375 160 80 4 13 158 17 173 1.56e-31 123
Msa1315910 MtrunA17_Chr6g0453131 41.615 161 75 5 13 158 18 174 2.07e-31 123
Msa1315910 MtrunA17_Chr8g0346001 40.642 187 89 7 10 180 15 195 2.12e-31 124
Msa1315910 MtrunA17_Chr4g0038751 41.071 168 86 6 13 170 18 182 9.22e-31 119
Msa1315910 MtrunA17_Chr6g0461661 45.802 131 65 4 10 138 18 144 2.46e-30 120
Msa1315910 MtrunA17_Chr2g0311661 39.286 168 80 6 10 157 20 185 2.62e-30 118
Msa1315910 MtrunA17_Chr2g0311651 38.202 178 88 6 10 167 21 196 3.24e-30 118
Msa1315910 MtrunA17_Chr2g0321631 42.308 156 77 5 11 154 5 159 5.86e-30 116
Msa1315910 MtrunA17_Chr3g0131911 39.286 168 83 6 10 163 14 176 1.54e-29 114
Msa1315910 MtrunA17_Chr5g0442771 45.669 127 64 4 13 137 21 144 2.90e-27 110
Msa1315910 MtrunA17_Chr7g0266701 35.976 164 90 5 10 159 4 166 3.81e-24 100
Msa1315910 MtrunA17_Chr8g0384351 33.939 165 88 6 10 173 10 154 4.52e-19 84.3
Msa1315910 MtrunA17_Chr4g0050701 28.736 174 101 5 10 171 11 173 1.49e-17 80.5
Msa1315910 MtrunA17_Chr3g0113001 40.310 129 63 6 61 177 13 139 1.12e-16 80.1
Msa1315910 MtrunA17_Chr7g0243371 42.857 84 46 2 56 137 6 89 2.43e-16 74.7
Msa1315910 MtrunA17_Chr3g0130321 32.919 161 83 6 10 154 7 158 1.92e-15 74.7
Msa1315910 MtrunA17_Chr7g0251651 28.743 167 110 5 10 172 18 179 4.15e-14 70.5
Msa1315910 MtrunA17_Chr3g0113011 62.500 48 17 1 11 58 20 66 5.75e-12 60.8
Msa1315910 MtrunA17_Chr7g0251661 33.077 130 79 5 10 137 10 133 8.42e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315910 AT4G35580.3 58.491 159 57 4 10 162 9 164 2.57e-55 191
Msa1315910 AT4G35580.2 58.491 159 57 4 10 162 9 164 2.81e-55 191
Msa1315910 AT4G35580.1 58.491 159 57 4 10 162 9 164 2.98e-55 190
Msa1315910 AT1G33060.1 57.143 154 57 4 10 157 24 174 1.91e-51 182
Msa1315910 AT1G33060.2 57.143 154 57 4 10 157 24 174 2.14e-51 182
Msa1315910 AT4G01550.1 43.805 226 108 7 12 235 6 214 3.93e-51 178
Msa1315910 AT3G49530.2 53.086 162 68 4 10 165 13 172 7.68e-51 176
Msa1315910 AT3G49530.1 53.086 162 68 4 10 165 13 172 3.58e-50 176
Msa1315910 AT5G24590.2 53.205 156 65 4 10 159 13 166 7.65e-49 172
Msa1315910 AT3G17730.1 49.102 167 76 4 10 170 6 169 1.80e-45 157
Msa1315910 AT5G17260.1 52.532 158 59 5 10 157 6 157 3.43e-45 162
Msa1315910 AT4G17980.1 48.734 158 72 3 10 159 6 162 1.89e-44 155
Msa1315910 AT3G03200.1 52.532 158 59 5 10 157 6 157 3.99e-44 160
Msa1315910 AT4G17980.2 48.734 158 72 3 10 159 6 162 5.68e-44 155
Msa1315910 AT4G01520.1 38.565 223 113 7 11 216 5 220 2.05e-43 154
Msa1315910 AT4G01540.4 38.739 222 112 7 12 216 6 220 4.70e-42 152
Msa1315910 AT1G65910.1 51.220 164 69 5 10 165 6 166 6.33e-42 156
Msa1315910 AT4G01540.2 38.739 222 112 7 12 216 6 220 6.74e-42 152
Msa1315910 AT4G01540.3 38.739 222 112 7 12 216 6 220 1.11e-41 152
Msa1315910 AT4G01540.1 38.739 222 112 7 12 216 6 220 1.74e-41 152
Msa1315910 AT5G46590.1 47.305 167 79 4 10 169 6 170 3.40e-41 147
Msa1315910 AT3G10480.1 49.342 152 67 4 13 157 30 178 1.23e-40 150
Msa1315910 AT3G10490.1 48.684 152 68 4 13 157 30 178 2.93e-40 143
Msa1315910 AT3G10480.2 49.007 151 68 4 13 157 30 177 5.78e-40 148
Msa1315910 AT1G02230.1 46.405 153 77 4 11 160 4 154 1.37e-39 145
Msa1315910 AT3G10490.2 48.684 152 68 4 13 157 30 178 2.01e-39 147
Msa1315910 AT3G04070.2 43.678 174 79 5 1 158 1 171 2.14e-38 141
Msa1315910 AT1G54330.1 50.331 151 69 4 10 157 6 153 5.27e-38 139
Msa1315910 AT3G15500.1 43.605 172 78 6 10 171 14 176 5.52e-38 139
Msa1315910 AT1G12260.2 45.963 161 75 7 3 157 2 156 9.37e-38 140
Msa1315910 AT5G08790.1 46.541 159 68 6 10 157 7 159 9.68e-38 138
Msa1315910 AT1G52890.1 44.318 176 79 6 10 175 14 180 1.16e-37 139
Msa1315910 AT1G01720.1 45.570 158 70 5 10 157 7 158 1.68e-37 137
Msa1315910 AT5G46590.2 50.725 138 65 3 10 146 6 141 2.28e-37 137
Msa1315910 AT5G09330.5 49.669 151 67 4 13 157 9 156 2.36e-37 142
Msa1315910 AT5G09330.2 49.669 151 67 4 13 157 9 156 2.36e-37 142
Msa1315910 AT5G09330.4 49.669 151 67 4 13 157 9 156 2.36e-37 142
Msa1315910 AT5G09330.3 49.669 151 67 4 13 157 9 156 2.36e-37 142
Msa1315910 AT5G09330.1 49.669 151 67 4 13 157 9 156 2.36e-37 142
Msa1315910 AT1G12260.1 45.963 161 75 7 3 157 2 156 2.44e-37 140
Msa1315910 AT4G27410.2 46.203 158 66 6 10 157 14 162 3.98e-37 137
Msa1315910 AT2G27300.1 45.181 166 81 6 13 174 17 176 5.17e-37 137
Msa1315910 AT3G18400.1 40.500 200 106 6 10 201 5 199 6.79e-37 137
Msa1315910 AT5G39610.1 46.061 165 76 6 7 163 17 176 8.54e-37 135
Msa1315910 AT3G04070.1 48.936 141 65 4 1 137 1 138 8.67e-37 137
Msa1315910 AT5G66300.1 46.753 154 73 5 10 157 12 162 1.10e-36 135
Msa1315910 AT3G10500.1 51.316 152 65 5 13 158 12 160 1.26e-36 140
Msa1315910 AT5G04410.1 50.000 152 67 4 13 158 12 160 1.50e-36 140
Msa1315910 AT3G44290.2 46.250 160 73 7 1 159 11 158 1.98e-36 133
Msa1315910 AT1G62700.1 41.935 186 95 7 3 183 2 179 2.29e-36 137
Msa1315910 AT1G62700.2 41.935 186 95 7 3 183 2 179 2.29e-36 137
Msa1315910 AT3G15510.1 40.196 204 92 7 14 190 21 221 2.41e-36 136
Msa1315910 AT1G32510.1 44.512 164 78 4 8 159 4 166 2.50e-36 134
Msa1315910 AT2G24430.2 47.097 155 74 4 10 159 16 167 3.45e-36 135
Msa1315910 AT2G24430.1 47.097 155 74 4 10 159 16 167 3.45e-36 135
Msa1315910 AT5G53950.1 53.435 131 57 3 8 137 15 142 9.07e-36 135
Msa1315910 AT1G02250.1 44.805 154 80 4 11 161 4 155 1.12e-35 134
Msa1315910 AT1G61110.1 44.379 169 72 6 7 157 13 177 2.41e-35 132
Msa1315910 AT3G44290.1 46.250 160 73 7 1 159 11 158 2.91e-35 133
Msa1315910 AT3G04060.1 36.863 255 125 11 10 242 20 260 3.23e-35 133
Msa1315910 AT5G62380.2 45.161 155 75 6 9 157 6 156 4.08e-35 132
Msa1315910 AT5G62380.1 45.161 155 75 6 9 157 6 156 4.08e-35 132
Msa1315910 AT1G69490.1 45.570 158 71 7 10 157 9 161 4.23e-35 130
Msa1315910 AT2G17040.1 45.946 148 75 4 13 158 9 153 4.39e-35 130
Msa1315910 AT5G63790.2 39.151 212 108 7 10 210 60 261 4.70e-35 132
Msa1315910 AT5G63790.1 39.151 212 108 7 10 210 50 251 4.90e-35 132
Msa1315910 AT5G22290.1 47.333 150 69 7 13 159 24 166 4.92e-35 132
Msa1315910 AT1G71930.2 44.444 153 77 5 10 157 9 158 5.90e-35 132
Msa1315910 AT1G71930.1 44.444 153 77 5 10 157 9 158 5.90e-35 132
Msa1315910 AT5G64060.1 46.753 154 67 5 13 157 9 156 6.62e-35 132
Msa1315910 AT1G76420.1 44.805 154 75 5 10 157 22 171 7.88e-35 132
Msa1315910 AT3G29035.1 52.713 129 55 5 10 137 24 147 1.23e-34 130
Msa1315910 AT5G61430.1 45.860 157 72 7 10 158 16 167 1.60e-34 131
Msa1315910 AT4G10350.1 46.452 155 73 5 10 157 9 160 1.94e-34 130
Msa1315910 AT5G04395.1 42.405 158 77 4 1 145 19 175 2.22e-34 126
Msa1315910 AT1G33280.1 46.711 152 74 5 10 157 8 156 2.46e-34 129
Msa1315910 AT4G27410.3 42.775 173 67 7 10 157 14 179 2.49e-34 130
Msa1315910 AT5G39820.1 34.081 223 117 4 13 208 23 242 3.89e-34 130
Msa1315910 AT3G10480.3 41.081 185 66 6 13 157 30 211 5.22e-34 133
Msa1315910 AT1G34190.1 47.742 155 66 5 13 158 19 167 5.82e-34 133
Msa1315910 AT2G33480.2 48.052 154 64 6 10 157 15 158 7.00e-34 127
Msa1315910 AT2G33480.1 46.753 154 68 5 10 157 15 160 9.03e-34 127
Msa1315910 AT2G02450.1 40.782 179 88 6 13 187 54 218 1.01e-33 129
Msa1315910 AT3G15170.1 50.388 129 60 3 10 137 20 145 1.03e-33 128
Msa1315910 AT5G07680.2 45.513 156 72 6 10 157 3 153 1.07e-33 128
Msa1315910 AT5G07680.1 51.938 129 56 5 10 137 17 140 1.19e-33 128
Msa1315910 AT2G18060.3 42.135 178 89 7 10 177 9 182 1.23e-33 129
Msa1315910 AT2G18060.1 42.135 178 89 7 10 177 9 182 1.23e-33 129
Msa1315910 AT2G02450.2 40.331 181 90 6 13 189 54 220 1.52e-33 130
Msa1315910 AT1G77450.1 43.590 156 73 5 11 157 11 160 4.38e-33 125
Msa1315910 AT1G34180.3 52.381 126 56 3 13 137 19 141 4.56e-33 129
Msa1315910 AT1G26870.1 38.000 200 92 6 13 183 19 215 4.88e-33 128
Msa1315910 AT4G36160.2 44.156 154 76 6 10 157 14 163 5.85e-33 127
Msa1315910 AT4G36160.1 44.156 154 76 6 10 157 10 159 6.16e-33 127
Msa1315910 AT4G36160.3 44.156 154 76 6 10 157 10 159 6.16e-33 127
Msa1315910 AT5G13180.1 42.484 153 77 4 10 157 14 160 1.15e-32 124
Msa1315910 AT1G34180.1 42.268 194 90 8 13 195 19 201 1.17e-32 129
Msa1315910 AT1G56010.2 36.634 202 97 5 10 184 19 216 2.71e-32 124
Msa1315910 AT2G43000.1 37.949 195 102 8 13 193 21 210 8.67e-32 122
Msa1315910 AT1G01010.1 44.231 156 77 4 12 159 5 158 1.44e-31 124
Msa1315910 AT1G79580.3 44.516 155 74 6 10 157 17 166 1.72e-31 123
Msa1315910 AT1G79580.5 44.516 155 74 6 10 157 17 166 1.72e-31 123
Msa1315910 AT1G79580.4 44.516 155 74 6 10 157 17 166 1.72e-31 123
Msa1315910 AT1G79580.2 44.516 155 74 6 10 157 17 166 1.72e-31 123
Msa1315910 AT1G79580.1 44.516 155 74 6 10 157 17 166 1.72e-31 123
Msa1315910 AT5G18270.2 49.612 129 60 4 10 137 21 145 3.10e-31 122
Msa1315910 AT3G12910.1 39.759 166 77 5 13 158 24 186 3.46e-31 121
Msa1315910 AT5G18270.1 48.837 129 61 4 10 137 21 145 7.42e-31 121
Msa1315910 AT2G46770.1 34.052 232 118 9 10 213 16 240 1.38e-30 120
Msa1315910 AT3G61910.1 33.607 244 130 10 10 231 11 244 2.50e-30 119
Msa1315910 AT3G04420.2 41.722 151 84 3 11 159 4 152 3.23e-30 118
Msa1315910 AT3G04420.1 41.722 151 84 3 11 159 4 152 4.65e-30 119
Msa1315910 AT1G52880.1 46.012 163 63 6 14 157 21 177 9.50e-30 117
Msa1315910 AT1G34180.4 47.826 138 56 4 13 137 19 153 9.50e-30 120
Msa1315910 AT1G34180.2 47.826 138 56 4 13 137 19 153 1.57e-29 120
Msa1315910 AT1G32770.1 41.566 166 75 7 10 157 16 177 2.22e-29 117
Msa1315910 AT4G28530.1 39.157 166 82 4 10 158 10 173 2.28e-29 117
Msa1315910 AT3G12977.1 37.433 187 91 7 10 182 18 192 7.19e-29 114
Msa1315910 AT5G22380.1 41.026 156 80 5 10 154 5 159 1.33e-28 112
Msa1315910 AT1G02220.1 41.781 146 80 4 11 155 4 145 4.55e-28 114
Msa1315910 AT1G32870.2 45.455 154 71 6 13 158 13 161 8.41e-26 109
Msa1315910 AT1G32870.1 45.455 154 71 6 13 158 13 161 8.86e-26 109
Msa1315910 AT1G32870.3 45.455 154 71 6 13 158 49 197 1.18e-25 109
Msa1315910 AT3G44350.2 37.821 156 87 4 12 158 7 161 1.64e-25 104
Msa1315910 AT3G44350.1 40.909 132 74 3 12 140 7 137 9.70e-25 99.8
Msa1315910 AT3G04430.1 40.441 136 65 5 16 139 6 137 4.28e-20 88.2
Msa1315910 AT4G28530.2 43.119 109 45 2 10 103 10 116 6.50e-19 87.4
Msa1315910 AT4G10350.2 39.855 138 65 6 59 189 11 137 1.68e-18 85.9
Msa1315910 AT5G61430.2 43.396 106 50 5 61 158 1 104 2.41e-18 84.7
Msa1315910 AT5G64530.2 35.938 128 68 4 10 137 3 116 4.17e-18 81.3
Msa1315910 AT1G56010.1 35.417 144 64 4 68 184 8 149 8.29e-18 83.2
Msa1315910 AT3G12977.2 37.903 124 64 4 68 182 20 139 8.37e-18 82.4
Msa1315910 AT5G64530.1 35.938 128 68 4 10 137 3 116 1.18e-17 80.9
Msa1315910 AT2G33480.3 44.898 98 46 3 66 157 8 103 2.21e-17 80.9
Msa1315910 AT3G56530.1 35.333 150 87 7 11 154 53 198 5.71e-14 72.8
Msa1315910 AT2G43000.2 35.338 133 70 6 75 193 2 132 1.94e-13 69.3
Msa1315910 AT5G14490.1 28.333 180 105 6 6 167 54 227 1.34e-12 68.9
Msa1315910 AT5G14490.4 28.333 180 105 6 6 167 51 224 1.35e-12 68.9
Msa1315910 AT5G14490.2 28.333 180 105 6 6 167 51 224 2.00e-12 67.8
Msa1315910 AT5G14490.3 28.333 180 105 6 6 167 54 227 2.03e-12 68.6

Find 64 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATTTCGAGATGATTTC+GGG 0.227385 8_4:+15494817 Msa1315910:CDS
AGAGGTACTGAAAATGTTAT+TGG 0.269464 8_4:+15493813 Msa1315910:CDS
ACAAATACGCAAATAGTAAA+AGG 0.269504 8_4:+15493727 Msa1315910:CDS
GCATCATTTCGAGATGATTT+CGG 0.275502 8_4:+15494816 Msa1315910:CDS
TGGTCTTGACCGTAAGATTA+AGG 0.284539 8_4:+15493788 Msa1315910:CDS
GAATATGGAACCAATGTTTC+AGG 0.286511 8_4:+15494280 Msa1315910:CDS
TTTACAGTGTGGCAATGTTC+TGG 0.292487 8_4:+15494746 Msa1315910:intron
CTCCTGGTGTTAATAGCAAC+TGG 0.300575 8_4:+15493871 Msa1315910:CDS
TACTATAATGGTTGTGCTCC+TGG 0.345726 8_4:+15493855 Msa1315910:CDS
AAAACACTTGTGTACTATAA+TGG 0.357000 8_4:+15493843 Msa1315910:CDS
GACATGGTGGTGGTTGGTCT+TGG 0.361614 8_4:-15494954 None:intergenic
CATATCGATGTGTCCACTTT+CGG 0.387067 8_4:-15494405 None:intergenic
TCGTTGAGAATGATTTACTA+TGG 0.400930 8_4:+15494566 Msa1315910:CDS
CTTCTTGAACATCCTAGTTC+AGG 0.401435 8_4:+15494783 Msa1315910:CDS
GAGGTACTGAAAATGTTATT+GGG 0.407217 8_4:+15493814 Msa1315910:CDS
TGATGAGGTTCCTGAAACAT+TGG 0.411707 8_4:-15494290 None:intergenic
GAAGGACACAGTGTGGATAC+TGG 0.428296 8_4:+15493757 Msa1315910:CDS
GACCGTAAGATTAAGGTTAG+AGG 0.442904 8_4:+15493795 Msa1315910:CDS
TGGTTGGTCTTGGATGATAC+TGG 0.447272 8_4:-15494944 None:intergenic
TGTTTGCAAGTTCGAACCTT+GGG 0.454947 8_4:+15493559 Msa1315910:CDS
TACCTCGCCAGAAAAGAATA+TGG 0.459100 8_4:+15494265 Msa1315910:CDS
CTCGGACTGGACAGGAAAGC+TGG 0.467178 8_4:-15494543 None:intergenic
TCATTCTCAACGACTCGGAC+TGG 0.469733 8_4:-15494556 None:intergenic
CCTCATAACTATGTTCCTGT+TGG 0.475870 8_4:+15493434 Msa1315910:CDS
GGTCGGAATCTGAATCCAAC+AGG 0.494801 8_4:-15493449 None:intergenic
TACCTCTAACCTTAATCTTA+CGG 0.495515 8_4:-15493797 None:intergenic
CAATTGTTTCAGGTAATAAG+TGG 0.498045 8_4:+15494242 Msa1315910:intron
GAAAATCATGAAACAGTTGA+AGG 0.499163 8_4:+15494139 Msa1315910:CDS
TCGGAACTCATGTGTCTACT+TGG 0.499283 8_4:-15494112 None:intergenic
TTCAATCTCTGAAAATGAGA+TGG 0.499943 8_4:+15494349 Msa1315910:CDS
TTTACAAGCTCTTCATCTGT+TGG 0.502845 8_4:-15493470 None:intergenic
CCAACAGGAACATAGTTATG+AGG 0.518146 8_4:-15493434 None:intergenic
TTCGAACCTTGGGACTTACC+AGG 0.522061 8_4:+15493569 Msa1315910:CDS
TTGTTTCTTCGTAGAGTGGA+AGG 0.522631 8_4:-15494918 None:intergenic
CAAGCTCTTCATCTGTTGGT+CGG 0.526541 8_4:-15493466 None:intergenic
GAAGCATCTTTATCGAACTC+AGG 0.527450 8_4:+15494371 Msa1315910:CDS
GTTATTGTTTCTTCGTAGAG+TGG 0.529521 8_4:-15494922 None:intergenic
ATCAATTCAATGTTAAATGA+CGG 0.532646 8_4:+15494467 Msa1315910:CDS
GATAGAATGATATGTGATGA+AGG 0.532647 8_4:+15494085 Msa1315910:CDS
TCCTCATCAATAGTTTCGAA+CGG 0.541580 8_4:-15494434 None:intergenic
CTCAACGACTCGGACTGGAC+AGG 0.555897 8_4:-15494551 None:intergenic
AAGCATCTTTATCGAACTCA+GGG 0.557608 8_4:+15494372 Msa1315910:CDS
CAATGTTCTGGATACTTCAA+CGG 0.563840 8_4:+15494758 Msa1315910:CDS
ACAAACCTGGTTATCATCAA+AGG 0.564326 8_4:-15493919 None:intergenic
TACCACCTTTGATGATAACC+AGG 0.567592 8_4:+15493914 Msa1315910:CDS
ATGTTTGCAAGTTCGAACCT+TGG 0.568862 8_4:+15493558 Msa1315910:CDS
ATAGTAAAAGGTTTAACAGA+AGG 0.579914 8_4:+15493739 Msa1315910:CDS
TCCTGGTGTTAATAGCAACT+GGG 0.584943 8_4:+15493872 Msa1315910:CDS
ATAGAATGATATGTGATGAA+GGG 0.590150 8_4:+15494086 Msa1315910:CDS
TGTGGATACTGGAAAGCCAC+TGG 0.602459 8_4:+15493768 Msa1315910:CDS
AGCTATAACATTGTTGACAG+TGG 0.605859 8_4:-15493528 None:intergenic
TTGCAATTGATCATCTCTAG+AGG 0.607895 8_4:-15494879 None:intergenic
TCCGTTCGAAACTATTGATG+AGG 0.608684 8_4:+15494433 Msa1315910:CDS
AATCTTACGGTCAAGACCAG+TGG 0.626820 8_4:-15493784 None:intergenic
ACCCAGTTGCTATTAACACC+AGG 0.638889 8_4:-15493873 None:intergenic
GAAGACTGGTATGTTGACAA+AGG 0.640048 8_4:-15494329 None:intergenic
TAAAATCCGATGATCCCGAA+TGG 0.649145 8_4:+15493682 Msa1315910:CDS
ATCATTTCGAGATGATTTCG+GGG 0.650121 8_4:+15494818 Msa1315910:CDS
GTAAATCATTCTCAACGACT+CGG 0.660341 8_4:-15494561 None:intergenic
AACCTGGTTATCATCAAAGG+TGG 0.663139 8_4:-15493916 None:intergenic
TAGAATGATATGTGATGAAG+GGG 0.664187 8_4:+15494087 Msa1315910:CDS
TCATTTCGAGATGATTTCGG+GGG 0.671935 8_4:+15494819 Msa1315910:CDS
TTTGCGTATTTGTAATCACG+AGG 0.676971 8_4:-15493717 None:intergenic
TTTAACAGAAGGACACAGTG+TGG 0.694289 8_4:+15493750 Msa1315910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATGAGAAAATAATGAT+GGG - chr8_4:15493613-15493632 None:intergenic 15.0%
!!! TTTTTATGAGAAAATAATGA+TGG - chr8_4:15493614-15493633 None:intergenic 15.0%
!!! TTTTATGAGAAAATAATGAT+GGG - chr8_4:15493613-15493632 None:intergenic 15.0%
!!! TTTTTATGAGAAAATAATGA+TGG - chr8_4:15493614-15493633 None:intergenic 15.0%
!! TATCTCAAAAACAAGTTATT+TGG + chr8_4:15493497-15493516 Msa1315910:CDS 20.0%
!! TTTATGAGAAAATAATGATG+GGG - chr8_4:15493612-15493631 None:intergenic 20.0%
!! ATCAATTCAATGTTAAATGA+CGG + chr8_4:15494467-15494486 Msa1315910:CDS 20.0%
!! ATACACACTTTAATATCATT+TGG - chr8_4:15494651-15494670 None:intergenic 20.0%
!! TATCTCAAAAACAAGTTATT+TGG + chr8_4:15493497-15493516 Msa1315910:CDS 20.0%
!! TTTATGAGAAAATAATGATG+GGG - chr8_4:15493612-15493631 None:intergenic 20.0%
!! ATCAATTCAATGTTAAATGA+CGG + chr8_4:15494467-15494486 Msa1315910:CDS 20.0%
!! ATACACACTTTAATATCATT+TGG - chr8_4:15494651-15494670 None:intergenic 20.0%
!!! ATAACTTGTTTTTGAGATAG+TGG - chr8_4:15493496-15493515 None:intergenic 25.0%
! TTATGAGAAAATAATGATGG+GGG - chr8_4:15493611-15493630 None:intergenic 25.0%
! ACAAATACGCAAATAGTAAA+AGG + chr8_4:15493727-15493746 Msa1315910:CDS 25.0%
! ATAGTAAAAGGTTTAACAGA+AGG + chr8_4:15493739-15493758 Msa1315910:CDS 25.0%
! AAAACACTTGTGTACTATAA+TGG + chr8_4:15493843-15493862 Msa1315910:CDS 25.0%
! ATGTTTACACTTTATGAGTA+TGG + chr8_4:15493954-15493973 Msa1315910:intron 25.0%
! ATAGAATGATATGTGATGAA+GGG + chr8_4:15494086-15494105 Msa1315910:CDS 25.0%
!!! AAATGACGGATATTTTGTTA+AGG + chr8_4:15494481-15494500 Msa1315910:CDS 25.0%
!! TTTTGAGCAGAAATATTTAC+TGG - chr8_4:15494626-15494645 None:intergenic 25.0%
!!! CTTATTTTTGAACAAGTACT+TGG + chr8_4:15494673-15494692 Msa1315910:intron 25.0%
!! TTCTTCTAAATTTTACAGTG+TGG + chr8_4:15494735-15494754 Msa1315910:intron 25.0%
!!! ATAACTTGTTTTTGAGATAG+TGG - chr8_4:15493496-15493515 None:intergenic 25.0%
! TTATGAGAAAATAATGATGG+GGG - chr8_4:15493611-15493630 None:intergenic 25.0%
! ACAAATACGCAAATAGTAAA+AGG + chr8_4:15493727-15493746 Msa1315910:CDS 25.0%
! ATAGTAAAAGGTTTAACAGA+AGG + chr8_4:15493739-15493758 Msa1315910:CDS 25.0%
! AAAACACTTGTGTACTATAA+TGG + chr8_4:15493843-15493862 Msa1315910:CDS 25.0%
! ATGTTTACACTTTATGAGTA+TGG + chr8_4:15493954-15493973 Msa1315910:intron 25.0%
! ATAGAATGATATGTGATGAA+GGG + chr8_4:15494086-15494105 Msa1315910:CDS 25.0%
!!! AAATGACGGATATTTTGTTA+AGG + chr8_4:15494481-15494500 Msa1315910:CDS 25.0%
!! TTTTGAGCAGAAATATTTAC+TGG - chr8_4:15494626-15494645 None:intergenic 25.0%
!!! CTTATTTTTGAACAAGTACT+TGG + chr8_4:15494673-15494692 Msa1315910:intron 25.0%
!! TTCTTCTAAATTTTACAGTG+TGG + chr8_4:15494735-15494754 Msa1315910:intron 25.0%
AGGACTAAAGAAAAACCATT+CGG - chr8_4:15493700-15493719 None:intergenic 30.0%
TACCTCTAACCTTAATCTTA+CGG - chr8_4:15493800-15493819 None:intergenic 30.0%
!! AGAGGTACTGAAAATGTTAT+TGG + chr8_4:15493813-15493832 Msa1315910:CDS 30.0%
!! GAGGTACTGAAAATGTTATT+GGG + chr8_4:15493814-15493833 Msa1315910:CDS 30.0%
TTGTTGTAACAAAACAAACC+TGG - chr8_4:15493935-15493954 None:intergenic 30.0%
!!! GAGTATGGTATGAGTTTTTT+CGG + chr8_4:15493969-15493988 Msa1315910:intron 30.0%
! AAAAGTCCTCTACGAAATTT+TGG - chr8_4:15494014-15494033 None:intergenic 30.0%
!!! TTCCTCTTCAGTTTTTTTCT+CGG - chr8_4:15494062-15494081 None:intergenic 30.0%
GATAGAATGATATGTGATGA+AGG + chr8_4:15494085-15494104 Msa1315910:CDS 30.0%
TAGAATGATATGTGATGAAG+GGG + chr8_4:15494087-15494106 Msa1315910:CDS 30.0%
! TGTTTCATGATTTTCGTGAT+CGG - chr8_4:15494134-15494153 None:intergenic 30.0%
GAAAATCATGAAACAGTTGA+AGG + chr8_4:15494139-15494158 Msa1315910:CDS 30.0%
AAGAATGAAATCCTTACATC+AGG - chr8_4:15494169-15494188 None:intergenic 30.0%
ACTTGTTTGTCAATTGTTTC+AGG + chr8_4:15494232-15494251 Msa1315910:intron 30.0%
! CAATTGTTTCAGGTAATAAG+TGG + chr8_4:15494242-15494261 Msa1315910:intron 30.0%
!! ATTGGTTCCATATTCTTTTC+TGG - chr8_4:15494275-15494294 None:intergenic 30.0%
!!! TGACAAAGGAAAGTACTTTT+CGG - chr8_4:15494318-15494337 None:intergenic 30.0%
! TTCAATCTCTGAAAATGAGA+TGG + chr8_4:15494349-15494368 Msa1315910:CDS 30.0%
TCGTTGAGAATGATTTACTA+TGG + chr8_4:15494566-15494585 Msa1315910:CDS 30.0%
! ATGAAATGTCTAAGTTGAGT+TGG + chr8_4:15494701-15494720 Msa1315910:intron 30.0%
AGGACTAAAGAAAAACCATT+CGG - chr8_4:15493700-15493719 None:intergenic 30.0%
TACCTCTAACCTTAATCTTA+CGG - chr8_4:15493800-15493819 None:intergenic 30.0%
!! AGAGGTACTGAAAATGTTAT+TGG + chr8_4:15493813-15493832 Msa1315910:CDS 30.0%
!! GAGGTACTGAAAATGTTATT+GGG + chr8_4:15493814-15493833 Msa1315910:CDS 30.0%
TTGTTGTAACAAAACAAACC+TGG - chr8_4:15493935-15493954 None:intergenic 30.0%
!!! GAGTATGGTATGAGTTTTTT+CGG + chr8_4:15493969-15493988 Msa1315910:intron 30.0%
! AAAAGTCCTCTACGAAATTT+TGG - chr8_4:15494014-15494033 None:intergenic 30.0%
!!! TTCCTCTTCAGTTTTTTTCT+CGG - chr8_4:15494062-15494081 None:intergenic 30.0%
GATAGAATGATATGTGATGA+AGG + chr8_4:15494085-15494104 Msa1315910:CDS 30.0%
TAGAATGATATGTGATGAAG+GGG + chr8_4:15494087-15494106 Msa1315910:CDS 30.0%
! TGTTTCATGATTTTCGTGAT+CGG - chr8_4:15494134-15494153 None:intergenic 30.0%
GAAAATCATGAAACAGTTGA+AGG + chr8_4:15494139-15494158 Msa1315910:CDS 30.0%
AAGAATGAAATCCTTACATC+AGG - chr8_4:15494169-15494188 None:intergenic 30.0%
ACTTGTTTGTCAATTGTTTC+AGG + chr8_4:15494232-15494251 Msa1315910:intron 30.0%
! CAATTGTTTCAGGTAATAAG+TGG + chr8_4:15494242-15494261 Msa1315910:intron 30.0%
!! ATTGGTTCCATATTCTTTTC+TGG - chr8_4:15494275-15494294 None:intergenic 30.0%
!!! TGACAAAGGAAAGTACTTTT+CGG - chr8_4:15494318-15494337 None:intergenic 30.0%
! TTCAATCTCTGAAAATGAGA+TGG + chr8_4:15494349-15494368 Msa1315910:CDS 30.0%
TCGTTGAGAATGATTTACTA+TGG + chr8_4:15494566-15494585 Msa1315910:CDS 30.0%
! ATGAAATGTCTAAGTTGAGT+TGG + chr8_4:15494701-15494720 Msa1315910:intron 30.0%
TTTACAAGCTCTTCATCTGT+TGG - chr8_4:15493473-15493492 None:intergenic 35.0%
AGCTATAACATTGTTGACAG+TGG - chr8_4:15493531-15493550 None:intergenic 35.0%
!! GGTTTGTTTGTGTTTTTACC+TGG - chr8_4:15493590-15493609 None:intergenic 35.0%
GGACTAAAGAAAAACCATTC+GGG - chr8_4:15493699-15493718 None:intergenic 35.0%
TTTGCGTATTTGTAATCACG+AGG - chr8_4:15493720-15493739 None:intergenic 35.0%
ACAAACCTGGTTATCATCAA+AGG - chr8_4:15493922-15493941 None:intergenic 35.0%
TATCCTCCAAAATTTCGTAG+AGG + chr8_4:15494005-15494024 Msa1315910:intron 35.0%
TTGAAGGAATTCCTGATGTA+AGG + chr8_4:15494155-15494174 Msa1315910:intron 35.0%
GAATATGGAACCAATGTTTC+AGG + chr8_4:15494280-15494299 Msa1315910:CDS 35.0%
! CATTTTCAGAGATTGAAGAC+TGG - chr8_4:15494346-15494365 None:intergenic 35.0%
AAGCATCTTTATCGAACTCA+GGG + chr8_4:15494372-15494391 Msa1315910:CDS 35.0%
TCCTCATCAATAGTTTCGAA+CGG - chr8_4:15494437-15494456 None:intergenic 35.0%
GTAAATCATTCTCAACGACT+CGG - chr8_4:15494564-15494583 None:intergenic 35.0%
!!! TGTCTAAGTTGAGTTGGTTT+TGG + chr8_4:15494707-15494726 Msa1315910:intron 35.0%
! CAATGTTCTGGATACTTCAA+CGG + chr8_4:15494758-15494777 Msa1315910:CDS 35.0%
GCATCATTTCGAGATGATTT+CGG + chr8_4:15494816-15494835 Msa1315910:CDS 35.0%
CATCATTTCGAGATGATTTC+GGG + chr8_4:15494817-15494836 Msa1315910:CDS 35.0%
ATCATTTCGAGATGATTTCG+GGG + chr8_4:15494818-15494837 Msa1315910:CDS 35.0%
TTGCAATTGATCATCTCTAG+AGG - chr8_4:15494882-15494901 None:intergenic 35.0%
! GTTATTGTTTCTTCGTAGAG+TGG - chr8_4:15494925-15494944 None:intergenic 35.0%
! TGAAGCAGATCTTTTTGACA+TGG - chr8_4:15494973-15494992 None:intergenic 35.0%
TTTACAAGCTCTTCATCTGT+TGG - chr8_4:15493473-15493492 None:intergenic 35.0%
AGCTATAACATTGTTGACAG+TGG - chr8_4:15493531-15493550 None:intergenic 35.0%
!! GGTTTGTTTGTGTTTTTACC+TGG - chr8_4:15493590-15493609 None:intergenic 35.0%
GGACTAAAGAAAAACCATTC+GGG - chr8_4:15493699-15493718 None:intergenic 35.0%
TTTGCGTATTTGTAATCACG+AGG - chr8_4:15493720-15493739 None:intergenic 35.0%
ACAAACCTGGTTATCATCAA+AGG - chr8_4:15493922-15493941 None:intergenic 35.0%
TATCCTCCAAAATTTCGTAG+AGG + chr8_4:15494005-15494024 Msa1315910:intron 35.0%
TTGAAGGAATTCCTGATGTA+AGG + chr8_4:15494155-15494174 Msa1315910:intron 35.0%
GAATATGGAACCAATGTTTC+AGG + chr8_4:15494280-15494299 Msa1315910:CDS 35.0%
! CATTTTCAGAGATTGAAGAC+TGG - chr8_4:15494346-15494365 None:intergenic 35.0%
AAGCATCTTTATCGAACTCA+GGG + chr8_4:15494372-15494391 Msa1315910:CDS 35.0%
TCCTCATCAATAGTTTCGAA+CGG - chr8_4:15494437-15494456 None:intergenic 35.0%
GTAAATCATTCTCAACGACT+CGG - chr8_4:15494564-15494583 None:intergenic 35.0%
!!! TGTCTAAGTTGAGTTGGTTT+TGG + chr8_4:15494707-15494726 Msa1315910:intron 35.0%
! CAATGTTCTGGATACTTCAA+CGG + chr8_4:15494758-15494777 Msa1315910:CDS 35.0%
GCATCATTTCGAGATGATTT+CGG + chr8_4:15494816-15494835 Msa1315910:CDS 35.0%
CATCATTTCGAGATGATTTC+GGG + chr8_4:15494817-15494836 Msa1315910:CDS 35.0%
ATCATTTCGAGATGATTTCG+GGG + chr8_4:15494818-15494837 Msa1315910:CDS 35.0%
TTGCAATTGATCATCTCTAG+AGG - chr8_4:15494882-15494901 None:intergenic 35.0%
! GTTATTGTTTCTTCGTAGAG+TGG - chr8_4:15494925-15494944 None:intergenic 35.0%
! TGAAGCAGATCTTTTTGACA+TGG - chr8_4:15494973-15494992 None:intergenic 35.0%
CCAACAGGAACATAGTTATG+AGG - chr8_4:15493437-15493456 None:intergenic 40.0%
CCTCATAACTATGTTCCTGT+TGG + chr8_4:15493434-15493453 Msa1315910:CDS 40.0%
ATGTTTGCAAGTTCGAACCT+TGG + chr8_4:15493558-15493577 Msa1315910:CDS 40.0%
TGTTTGCAAGTTCGAACCTT+GGG + chr8_4:15493559-15493578 Msa1315910:CDS 40.0%
! TTTTTACCTGGTAAGTCCCA+AGG - chr8_4:15493578-15493597 None:intergenic 40.0%
TAAAATCCGATGATCCCGAA+TGG + chr8_4:15493682-15493701 Msa1315910:CDS 40.0%
GAAAAACCATTCGGGATCAT+CGG - chr8_4:15493691-15493710 None:intergenic 40.0%
TTTAACAGAAGGACACAGTG+TGG + chr8_4:15493750-15493769 Msa1315910:CDS 40.0%
! TGGTCTTGACCGTAAGATTA+AGG + chr8_4:15493788-15493807 Msa1315910:CDS 40.0%
GACCGTAAGATTAAGGTTAG+AGG + chr8_4:15493795-15493814 Msa1315910:CDS 40.0%
TACTATAATGGTTGTGCTCC+TGG + chr8_4:15493855-15493874 Msa1315910:CDS 40.0%
! TCCTGGTGTTAATAGCAACT+GGG + chr8_4:15493872-15493891 Msa1315910:CDS 40.0%
! TACCACCTTTGATGATAACC+AGG + chr8_4:15493914-15493933 Msa1315910:CDS 40.0%
AACCTGGTTATCATCAAAGG+TGG - chr8_4:15493919-15493938 None:intergenic 40.0%
! AGTCCTCTACGAAATTTTGG+AGG - chr8_4:15494011-15494030 None:intergenic 40.0%
AGCCGAGAAAAAAACTGAAG+AGG + chr8_4:15494057-15494076 Msa1315910:CDS 40.0%
TACCTCGCCAGAAAAGAATA+TGG + chr8_4:15494265-15494284 Msa1315910:CDS 40.0%
!! TTCCATATTCTTTTCTGGCG+AGG - chr8_4:15494270-15494289 None:intergenic 40.0%
TGATGAGGTTCCTGAAACAT+TGG - chr8_4:15494293-15494312 None:intergenic 40.0%
!! AAGTACTTTTCGGCTTGATG+AGG - chr8_4:15494308-15494327 None:intergenic 40.0%
GAAGACTGGTATGTTGACAA+AGG - chr8_4:15494332-15494351 None:intergenic 40.0%
! GAAGCATCTTTATCGAACTC+AGG + chr8_4:15494371-15494390 Msa1315910:CDS 40.0%
!! GGGTTTTATGATTCCGAAAG+TGG + chr8_4:15494392-15494411 Msa1315910:CDS 40.0%
CATATCGATGTGTCCACTTT+CGG - chr8_4:15494408-15494427 None:intergenic 40.0%
TCCGTTCGAAACTATTGATG+AGG + chr8_4:15494433-15494452 Msa1315910:CDS 40.0%
TTTACAGTGTGGCAATGTTC+TGG + chr8_4:15494746-15494765 Msa1315910:intron 40.0%
CTTCTTGAACATCCTAGTTC+AGG + chr8_4:15494783-15494802 Msa1315910:CDS 40.0%
TCATTTCGAGATGATTTCGG+GGG + chr8_4:15494819-15494838 Msa1315910:CDS 40.0%
! TTGTTTCTTCGTAGAGTGGA+AGG - chr8_4:15494921-15494940 None:intergenic 40.0%
! AGATCTTTTTGACATGGTGG+TGG - chr8_4:15494967-15494986 None:intergenic 40.0%
! AGCAGATCTTTTTGACATGG+TGG - chr8_4:15494970-15494989 None:intergenic 40.0%
CCAACAGGAACATAGTTATG+AGG - chr8_4:15493437-15493456 None:intergenic 40.0%
CCTCATAACTATGTTCCTGT+TGG + chr8_4:15493434-15493453 Msa1315910:CDS 40.0%
ATGTTTGCAAGTTCGAACCT+TGG + chr8_4:15493558-15493577 Msa1315910:CDS 40.0%
TGTTTGCAAGTTCGAACCTT+GGG + chr8_4:15493559-15493578 Msa1315910:CDS 40.0%
! TTTTTACCTGGTAAGTCCCA+AGG - chr8_4:15493578-15493597 None:intergenic 40.0%
TAAAATCCGATGATCCCGAA+TGG + chr8_4:15493682-15493701 Msa1315910:CDS 40.0%
GAAAAACCATTCGGGATCAT+CGG - chr8_4:15493691-15493710 None:intergenic 40.0%
TTTAACAGAAGGACACAGTG+TGG + chr8_4:15493750-15493769 Msa1315910:CDS 40.0%
! TGGTCTTGACCGTAAGATTA+AGG + chr8_4:15493788-15493807 Msa1315910:CDS 40.0%
GACCGTAAGATTAAGGTTAG+AGG + chr8_4:15493795-15493814 Msa1315910:CDS 40.0%
TACTATAATGGTTGTGCTCC+TGG + chr8_4:15493855-15493874 Msa1315910:CDS 40.0%
! TCCTGGTGTTAATAGCAACT+GGG + chr8_4:15493872-15493891 Msa1315910:CDS 40.0%
! TACCACCTTTGATGATAACC+AGG + chr8_4:15493914-15493933 Msa1315910:CDS 40.0%
AACCTGGTTATCATCAAAGG+TGG - chr8_4:15493919-15493938 None:intergenic 40.0%
! AGTCCTCTACGAAATTTTGG+AGG - chr8_4:15494011-15494030 None:intergenic 40.0%
AGCCGAGAAAAAAACTGAAG+AGG + chr8_4:15494057-15494076 Msa1315910:CDS 40.0%
TACCTCGCCAGAAAAGAATA+TGG + chr8_4:15494265-15494284 Msa1315910:CDS 40.0%
!! TTCCATATTCTTTTCTGGCG+AGG - chr8_4:15494270-15494289 None:intergenic 40.0%
TGATGAGGTTCCTGAAACAT+TGG - chr8_4:15494293-15494312 None:intergenic 40.0%
!! AAGTACTTTTCGGCTTGATG+AGG - chr8_4:15494308-15494327 None:intergenic 40.0%
GAAGACTGGTATGTTGACAA+AGG - chr8_4:15494332-15494351 None:intergenic 40.0%
! GAAGCATCTTTATCGAACTC+AGG + chr8_4:15494371-15494390 Msa1315910:CDS 40.0%
!! GGGTTTTATGATTCCGAAAG+TGG + chr8_4:15494392-15494411 Msa1315910:CDS 40.0%
CATATCGATGTGTCCACTTT+CGG - chr8_4:15494408-15494427 None:intergenic 40.0%
TCCGTTCGAAACTATTGATG+AGG + chr8_4:15494433-15494452 Msa1315910:CDS 40.0%
TTTACAGTGTGGCAATGTTC+TGG + chr8_4:15494746-15494765 Msa1315910:intron 40.0%
CTTCTTGAACATCCTAGTTC+AGG + chr8_4:15494783-15494802 Msa1315910:CDS 40.0%
TCATTTCGAGATGATTTCGG+GGG + chr8_4:15494819-15494838 Msa1315910:CDS 40.0%
! TTGTTTCTTCGTAGAGTGGA+AGG - chr8_4:15494921-15494940 None:intergenic 40.0%
! AGATCTTTTTGACATGGTGG+TGG - chr8_4:15494967-15494986 None:intergenic 40.0%
! AGCAGATCTTTTTGACATGG+TGG - chr8_4:15494970-15494989 None:intergenic 40.0%
CAAGCTCTTCATCTGTTGGT+CGG - chr8_4:15493469-15493488 None:intergenic 45.0%
AATCTTACGGTCAAGACCAG+TGG - chr8_4:15493787-15493806 None:intergenic 45.0%
! CTCCTGGTGTTAATAGCAAC+TGG + chr8_4:15493871-15493890 Msa1315910:CDS 45.0%
! ACCCAGTTGCTATTAACACC+AGG - chr8_4:15493876-15493895 None:intergenic 45.0%
TCGGAACTCATGTGTCTACT+TGG - chr8_4:15494115-15494134 None:intergenic 45.0%
GCATAGTATTCGCCTGAACT+AGG - chr8_4:15494798-15494817 None:intergenic 45.0%
AGATGATTTCGGGGGATTTG+AGG + chr8_4:15494827-15494846 Msa1315910:CDS 45.0%
!! TGGTTGGTCTTGGATGATAC+TGG - chr8_4:15494947-15494966 None:intergenic 45.0%
!!! CTTTTTGACATGGTGGTGGT+TGG - chr8_4:15494963-15494982 None:intergenic 45.0%
CAAGCTCTTCATCTGTTGGT+CGG - chr8_4:15493469-15493488 None:intergenic 45.0%
AATCTTACGGTCAAGACCAG+TGG - chr8_4:15493787-15493806 None:intergenic 45.0%
! CTCCTGGTGTTAATAGCAAC+TGG + chr8_4:15493871-15493890 Msa1315910:CDS 45.0%
! ACCCAGTTGCTATTAACACC+AGG - chr8_4:15493876-15493895 None:intergenic 45.0%
TCGGAACTCATGTGTCTACT+TGG - chr8_4:15494115-15494134 None:intergenic 45.0%
GCATAGTATTCGCCTGAACT+AGG - chr8_4:15494798-15494817 None:intergenic 45.0%
AGATGATTTCGGGGGATTTG+AGG + chr8_4:15494827-15494846 Msa1315910:CDS 45.0%
!! TGGTTGGTCTTGGATGATAC+TGG - chr8_4:15494947-15494966 None:intergenic 45.0%
!!! CTTTTTGACATGGTGGTGGT+TGG - chr8_4:15494963-15494982 None:intergenic 45.0%
GGTCGGAATCTGAATCCAAC+AGG - chr8_4:15493452-15493471 None:intergenic 50.0%
TTCGAACCTTGGGACTTACC+AGG + chr8_4:15493569-15493588 Msa1315910:CDS 50.0%
GAAGGACACAGTGTGGATAC+TGG + chr8_4:15493757-15493776 Msa1315910:CDS 50.0%
TGTGGATACTGGAAAGCCAC+TGG + chr8_4:15493768-15493787 Msa1315910:CDS 50.0%
! TCATTCTCAACGACTCGGAC+TGG - chr8_4:15494559-15494578 None:intergenic 50.0%
GGTCGGAATCTGAATCCAAC+AGG - chr8_4:15493452-15493471 None:intergenic 50.0%
TTCGAACCTTGGGACTTACC+AGG + chr8_4:15493569-15493588 Msa1315910:CDS 50.0%
GAAGGACACAGTGTGGATAC+TGG + chr8_4:15493757-15493776 Msa1315910:CDS 50.0%
TGTGGATACTGGAAAGCCAC+TGG + chr8_4:15493768-15493787 Msa1315910:CDS 50.0%
! TCATTCTCAACGACTCGGAC+TGG - chr8_4:15494559-15494578 None:intergenic 50.0%
!! GACATGGTGGTGGTTGGTCT+TGG - chr8_4:15494957-15494976 None:intergenic 55.0%
!! GACATGGTGGTGGTTGGTCT+TGG - chr8_4:15494957-15494976 None:intergenic 55.0%
! CTCGGACTGGACAGGAAAGC+TGG - chr8_4:15494546-15494565 None:intergenic 60.0%
! CTCAACGACTCGGACTGGAC+AGG - chr8_4:15494554-15494573 None:intergenic 60.0%
! CTCGGACTGGACAGGAAAGC+TGG - chr8_4:15494546-15494565 None:intergenic 60.0%
! CTCAACGACTCGGACTGGAC+AGG - chr8_4:15494554-15494573 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 15493419 15495010 15493419 ID=Msa1315910;Name=Msa1315910
chr8_4 mRNA 15493419 15495010 15493419 ID=Msa1315910-mRNA-1;Parent=Msa1315910;Name=Msa1315910-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0.5|0|1|1|1|5|0|404
chr8_4 exon 15493419 15493590 15493419 ID=Msa1315910-mRNA-1:exon:5983;Parent=Msa1315910-mRNA-1
chr8_4 exon 15493670 15493935 15493670 ID=Msa1315910-mRNA-1:exon:5984;Parent=Msa1315910-mRNA-1
chr8_4 exon 15494025 15494171 15494025 ID=Msa1315910-mRNA-1:exon:5985;Parent=Msa1315910-mRNA-1
chr8_4 exon 15494254 15494625 15494254 ID=Msa1315910-mRNA-1:exon:5986;Parent=Msa1315910-mRNA-1
chr8_4 exon 15494753 15495010 15494753 ID=Msa1315910-mRNA-1:exon:5987;Parent=Msa1315910-mRNA-1
chr8_4 CDS 15493419 15493590 15493419 ID=Msa1315910-mRNA-1:cds;Parent=Msa1315910-mRNA-1
chr8_4 CDS 15493670 15493935 15493670 ID=Msa1315910-mRNA-1:cds;Parent=Msa1315910-mRNA-1
chr8_4 CDS 15494025 15494171 15494025 ID=Msa1315910-mRNA-1:cds;Parent=Msa1315910-mRNA-1
chr8_4 CDS 15494254 15494625 15494254 ID=Msa1315910-mRNA-1:cds;Parent=Msa1315910-mRNA-1
chr8_4 CDS 15494753 15495010 15494753 ID=Msa1315910-mRNA-1:cds;Parent=Msa1315910-mRNA-1
Gene Sequence

>Msa1315910

ATGACAAACTCATTTCCTCATAACTATGTTCCTGTTGGATTCAGATTCCGACCAACAGATGAAGAGCTTGTAAACCACTATCTCAAAAACAAGTTATTTGGTAATGATTCCACTGTCAACAATGTTATAGCTGAAGTTGATGTTTGCAAGTTCGAACCTTGGGACTTACCAGCTTGTTCAATCATAAAATCCGATGATCCCGAATGGTTTTTCTTTAGTCCTCGTGATTACAAATACGCAAATAGTAAAAGGTTTAACAGAAGGACACAGTGTGGATACTGGAAAGCCACTGGTCTTGACCGTAAGATTAAGGTTAGAGGTACTGAAAATGTTATTGGGACAAAGAAAACACTTGTGTACTATAATGGTTGTGCTCCTGGTGTTAATAGCAACTGGGTGATTCATGAATATCATTCTACCACCTTTGATGATAACCAGAGGACTTTTGTTTTGTGTCGCTTGATGAAGAAAGCCGAGAAAAAAACTGAAGAGGAAACTGATAGAATGATATGTGATGAAGGGGAGCCAAGTAGACACATGAGTTCCGATCACGAAAATCATGAAACAGTTGAAGGAATTCCTGATGTAATAAGTGGTACCTCGCCAGAAAAGAATATGGAACCAATGTTTCAGGAACCTCATCAAGCCGAAAAGTACTTTCCTTTGTCAACATACCAGTCTTCAATCTCTGAAAATGAGATGGAAGCATCTTTATCGAACTCAGGGTTTTATGATTCCGAAAGTGGACACATCGATATGCAGAGTCCGTTCGAAACTATTGATGAGGAAAATCAGTTCATCAATTCAATGTTAAATGACGGATATTTTGTTAAGGATAATGATATGTATAGCGAACAAAGAAGACACACTTTTGCCAGCTTTCCTGTCCAGTCCGAGTCGTTGAGAATGATTTACTATGGAAGCAGTGACACAAATGCTGAATTAGTCTCTATGCCATGTGGCAATGTTCTGGATACTTCAACGGCGCTTCTTGAACATCCTAGTTCAGGCGAATACTATGCATCATTTCGAGATGATTTCGGGGGATTTGAGGCATCATCTTGTGATTCAACTGCAGATAAACCTCTAGAGATGATCAATTGCAATGAAATTTCTAGTGCACCTTCCACTCTACGAAGAAACAATAACCAGTATCATCCAAGACCAACCACCACCATGTCAAAAAGATCTGCTTCAAGACGATCTCAAACATAG
Protein sequence

>Msa1315910

MTNSFPHNYVPVGFRFRPTDEELVNHYLKNKLFGNDSTVNNVIAEVDVCKFEPWDLPACSIIKSDDPEWFFFSPRDYKYANSKRFNRRTQCGYWKATGLDRKIKVRGTENVIGTKKTLVYYNGCAPGVNSNWVIHEYHSTTFDDNQRTFVLCRLMKKAEKKTEEETDRMICDEGEPSRHMSSDHENHETVEGIPDVISGTSPEKNMEPMFQEPHQAEKYFPLSTYQSSISENEMEASLSNSGFYDSESGHIDMQSPFETIDEENQFINSMLNDGYFVKDNDMYSEQRRHTFASFPVQSESLRMIYYGSSDTNAELVSMPCGNVLDTSTALLEHPSSGEYYASFRDDFGGFEASSCDSTADKPLEMINCNEISSAPSTLRRNNNQYHPRPTTTMSKRSASRRSQT*