AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1315930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315930 MtrunA17_Chr8g0345701 83.333 162 26 1 1 162 1 161 6.82e-97 280
Msa1315930 MtrunA17_Chr8g0345691 42.361 288 94 11 7 236 12 285 2.75e-52 174
Msa1315930 MtrunA17_Chr8g0345671 55.769 156 52 5 7 159 11 152 3.20e-49 166
Msa1315930 MtrunA17_Chr8g0345711 49.342 152 59 4 6 153 11 148 6.39e-42 140
Msa1315930 MtrunA17_Chr8g0345731 47.205 161 63 6 7 159 24 170 8.26e-40 135
Msa1315930 MtrunA17_Chr8g0345721 45.294 170 48 5 9 147 37 192 4.74e-39 134
Msa1315930 MtrunA17_Chr8g0345741 49.324 148 58 5 18 162 2 135 1.11e-38 132
Msa1315930 MtrunA17_Chr3g0128151 46.622 148 59 7 6 150 21 151 1.07e-32 124
Msa1315930 MtrunA17_Chr3g0128111 42.424 165 68 8 10 164 45 192 2.83e-32 118
Msa1315930 MtrunA17_Chr5g0428991 44.898 147 61 5 7 150 25 154 3.22e-32 123
Msa1315930 MtrunA17_Chr1g0197361 44.295 149 64 6 2 147 3 135 9.78e-29 113
Msa1315930 MtrunA17_Chr5g0433781 43.836 146 62 5 5 147 4 132 3.50e-28 112
Msa1315930 MtrunA17_Chr2g0309891 42.069 145 64 5 6 147 5 132 8.68e-28 108
Msa1315930 MtrunA17_Chr3g0109821 43.836 146 62 5 5 147 4 132 1.02e-27 110
Msa1315930 MtrunA17_Chr8g0364791 39.007 141 66 5 10 147 9 132 5.08e-27 107
Msa1315930 MtrunA17_Chr8g0384201 39.007 141 66 5 10 147 9 132 6.91e-27 107
Msa1315930 MtrunA17_Chr6g0481091 41.401 157 69 6 3 156 2 138 1.40e-26 102
Msa1315930 MtrunA17_Chr2g0316971 40.972 144 65 4 7 147 23 149 1.89e-26 105
Msa1315930 MtrunA17_Chr6g0484441 40.559 143 63 5 7 146 5 128 3.03e-26 103
Msa1315930 MtrunA17_Chr3g0130101 40.940 149 67 6 2 147 3 133 5.51e-26 103
Msa1315930 MtrunA17_Chr1g0147421 41.892 148 67 5 2 146 22 153 1.06e-25 103
Msa1315930 MtrunA17_Chr3g0092671 42.553 141 62 5 10 147 8 132 1.28e-25 104
Msa1315930 MtrunA17_Chr4g0060931 43.056 144 60 7 7 147 17 141 1.78e-25 102
Msa1315930 MtrunA17_Chr5g0400461 38.158 152 71 5 4 147 3 139 2.22e-25 101
Msa1315930 MtrunA17_Chr3g0091921 43.056 144 60 7 7 147 16 140 2.51e-25 101
Msa1315930 MtrunA17_Chr6g0453451 43.056 144 60 7 7 147 20 144 2.58e-25 101
Msa1315930 MtrunA17_Chr3g0139331 41.026 156 68 6 6 154 10 148 2.79e-25 101
Msa1315930 MtrunA17_Chr1g0201021 34.101 217 115 9 2 212 15 209 4.41e-25 103
Msa1315930 MtrunA17_Chr3g0124761 39.333 150 68 6 1 147 1 130 7.70e-25 99.4
Msa1315930 MtrunA17_Chr6g0461661 40.972 144 65 6 7 147 18 144 9.55e-25 100
Msa1315930 MtrunA17_Chr4g0054791 37.333 150 75 4 4 149 3 137 1.36e-24 99.4
Msa1315930 MtrunA17_Chr2g0318101 39.073 151 70 6 7 154 15 146 3.50e-24 99.0
Msa1315930 MtrunA17_Chr5g0398971 38.667 150 72 6 1 146 1 134 4.32e-24 98.6
Msa1315930 MtrunA17_Chr1g0183741 35.948 153 78 5 2 151 5 140 1.62e-23 95.5
Msa1315930 MtrunA17_Chr3g0144271 35.404 161 81 4 6 159 22 166 2.38e-23 97.4
Msa1315930 MtrunA17_Chr1g0197351 39.310 145 68 5 5 146 40 167 3.96e-23 97.1
Msa1315930 MtrunA17_Chr7g0253011 41.781 146 63 7 7 147 17 145 4.01e-23 96.3
Msa1315930 MtrunA17_Chr4g0047841 39.161 143 67 5 7 146 15 140 4.33e-23 95.9
Msa1315930 MtrunA17_Chr7g0217721 39.873 158 64 8 10 155 22 160 5.22e-23 95.5
Msa1315930 MtrunA17_Chr7g0261411 35.948 153 78 5 2 151 5 140 5.53e-23 94.7
Msa1315930 MtrunA17_Chr3g0130731 38.667 150 69 6 1 147 1 130 5.73e-23 94.7
Msa1315930 MtrunA17_Chr7g0214071 39.041 146 66 5 7 149 15 140 6.50e-23 93.6
Msa1315930 MtrunA17_Chr8g0385991 35.616 146 72 5 5 147 12 138 1.05e-22 92.4
Msa1315930 MtrunA17_Chr4g0026141 35.032 157 82 5 7 158 5 146 1.08e-22 93.2
Msa1315930 MtrunA17_Chr4g0042561 38.411 151 69 7 1 146 1 132 2.00e-22 92.8
Msa1315930 MtrunA17_Chr8g0384721 38.000 150 70 6 1 147 1 130 2.19e-22 92.8
Msa1315930 MtrunA17_Chr7g0217711 38.608 158 66 8 10 155 22 160 2.73e-22 90.1
Msa1315930 MtrunA17_Chr8g0359921 38.514 148 69 6 3 147 10 138 1.02e-21 91.7
Msa1315930 MtrunA17_Chr4g0056541 36.000 150 75 6 1 146 1 133 1.10e-21 92.0
Msa1315930 MtrunA17_Chr7g0252971 36.601 153 70 6 5 147 6 141 1.50e-21 91.7
Msa1315930 MtrunA17_Chr7g0263931 31.841 201 105 9 7 192 11 194 1.89e-21 90.9
Msa1315930 MtrunA17_Chr2g0312321 37.162 148 69 5 7 151 11 137 2.11e-21 90.5
Msa1315930 MtrunA17_Chr2g0321631 35.374 147 74 6 8 148 5 136 3.64e-21 89.0
Msa1315930 MtrunA17_Chr2g0318081 38.621 145 67 6 6 147 15 140 7.62e-21 89.7
Msa1315930 MtrunA17_Chr7g0266701 34.459 148 76 5 7 148 4 136 1.23e-20 87.4
Msa1315930 MtrunA17_Chr4g0018391 34.667 150 77 6 1 146 1 133 1.32e-20 89.0
Msa1315930 MtrunA17_Chr2g0311651 40.141 142 64 7 10 146 25 150 1.39e-20 88.6
Msa1315930 MtrunA17_Chr2g0311661 39.437 142 65 7 10 146 24 149 1.76e-20 87.8
Msa1315930 MtrunA17_Chr4g0076731 37.143 175 83 9 7 173 55 210 2.04e-20 89.4
Msa1315930 MtrunA17_Chr4g0038751 37.838 148 69 7 10 153 18 146 2.34e-20 87.4
Msa1315930 MtrunA17_Chr8g0361731 35.461 141 71 6 10 147 17 140 4.17e-20 88.2
Msa1315930 MtrunA17_Chr6g0453131 38.194 144 67 7 7 147 16 140 4.39e-20 87.8
Msa1315930 MtrunA17_Chr5g0417791 36.806 144 69 6 7 147 3 127 6.57e-20 85.9
Msa1315930 MtrunA17_Chr2g0321741 42.623 122 49 7 28 146 13 116 7.86e-20 87.0
Msa1315930 MtrunA17_Chr1g0200561 34.667 150 77 6 1 146 13 145 8.80e-20 86.7
Msa1315930 MtrunA17_Chr2g0326361 33.557 149 79 5 2 147 9 140 2.74e-19 85.1
Msa1315930 MtrunA17_Chr8g0372121 33.333 147 77 6 5 147 4 133 3.69e-19 84.3
Msa1315930 MtrunA17_Chr5g0417001 34.043 141 73 5 10 147 17 140 4.88e-19 85.1
Msa1315930 MtrunA17_Chr5g0405211 32.653 147 78 6 5 147 6 135 5.32e-19 84.7
Msa1315930 MtrunA17_Chr4g0017921 34.899 149 76 6 3 147 4 135 4.95e-18 82.0
Msa1315930 MtrunA17_Chr8g0346001 33.333 147 77 6 5 147 13 142 1.79e-17 80.9
Msa1315930 MtrunA17_Chr2g0309331 36.301 146 71 7 6 146 9 137 2.03e-17 80.1
Msa1315930 MtrunA17_Chr5g0442771 37.324 142 68 7 10 147 21 145 7.82e-17 78.2
Msa1315930 MtrunA17_Chr3g0131911 32.500 160 84 7 5 159 12 152 1.33e-16 76.3
Msa1315930 MtrunA17_Chr8g0384351 34.868 152 66 6 2 152 5 124 3.64e-14 68.6
Msa1315930 MtrunA17_Chr4g0050701 28.472 144 75 5 7 147 11 129 3.92e-13 65.9
Msa1315930 MtrunA17_Chr7g0251651 28.834 163 92 6 2 159 13 156 7.40e-13 65.1
Msa1315930 MtrunA17_Chr3g0130321 30.000 150 79 4 1 147 1 127 4.44e-11 60.5
Msa1315930 MtrunA17_Chr8g0367761 30.921 152 84 6 6 147 67 207 5.76e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1315930 AT4G35580.2 48.667 150 57 6 6 152 8 140 2.54e-37 137
Msa1315930 AT4G35580.3 48.667 150 57 6 6 152 8 140 2.65e-37 137
Msa1315930 AT4G35580.1 48.667 150 57 6 6 152 8 140 3.07e-37 137
Msa1315930 AT1G33060.1 47.619 147 57 6 6 149 23 152 5.61e-37 137
Msa1315930 AT1G33060.2 47.619 147 57 6 6 149 23 152 5.89e-37 137
Msa1315930 AT4G01520.1 39.655 174 81 6 8 171 5 164 7.06e-33 121
Msa1315930 AT4G01540.2 41.040 173 78 6 9 171 6 164 3.00e-32 122
Msa1315930 AT4G01540.4 41.040 173 78 6 9 171 6 164 3.95e-32 121
Msa1315930 AT4G01540.1 41.040 173 78 6 9 171 6 164 4.75e-32 122
Msa1315930 AT4G01540.3 41.040 173 78 6 9 171 6 164 7.67e-32 120
Msa1315930 AT5G24590.2 43.709 151 66 5 5 152 11 145 1.11e-31 120
Msa1315930 AT4G01550.1 40.936 171 78 6 9 170 6 162 1.95e-31 120
Msa1315930 AT3G10490.1 41.216 148 67 5 3 147 23 153 3.52e-31 115
Msa1315930 AT3G10480.2 42.568 148 65 5 3 147 23 153 7.93e-31 118
Msa1315930 AT3G10480.1 42.568 148 65 5 3 147 23 153 8.35e-31 118
Msa1315930 AT3G49530.2 42.000 150 68 5 6 152 12 145 1.32e-30 117
Msa1315930 AT3G49530.1 42.000 150 68 5 6 152 12 145 1.39e-30 118
Msa1315930 AT1G02230.1 38.596 171 83 6 8 170 4 160 2.22e-30 115
Msa1315930 AT3G10490.2 41.216 148 67 5 3 147 23 153 2.98e-30 117
Msa1315930 AT5G04410.1 45.890 146 59 5 5 147 7 135 2.35e-29 115
Msa1315930 AT4G17980.1 38.776 147 72 4 4 147 3 134 2.54e-29 111
Msa1315930 AT4G17980.2 38.776 147 72 4 4 147 3 134 6.38e-29 110
Msa1315930 AT3G10500.1 45.205 146 60 5 5 147 7 135 5.54e-28 111
Msa1315930 AT5G22290.1 39.106 179 78 9 1 176 16 166 8.34e-28 108
Msa1315930 AT5G17260.1 43.448 145 62 5 5 146 4 131 1.03e-27 110
Msa1315930 AT3G15170.1 41.333 150 68 4 1 147 14 146 1.43e-27 107
Msa1315930 AT1G65910.1 43.448 145 62 5 5 146 4 131 2.26e-27 110
Msa1315930 AT5G53950.1 40.816 147 67 4 4 147 14 143 3.08e-27 107
Msa1315930 AT3G17730.1 41.935 155 67 6 5 156 4 138 4.26e-27 104
Msa1315930 AT5G61430.1 41.611 149 65 7 2 147 11 140 3.18e-26 104
Msa1315930 AT3G18400.1 40.278 144 64 5 7 147 5 129 4.63e-26 103
Msa1315930 AT3G44290.2 41.497 147 64 7 3 146 11 138 5.66e-26 101
Msa1315930 AT5G46590.2 38.776 147 71 5 4 147 3 133 8.51e-26 102
Msa1315930 AT5G46590.1 38.776 147 71 5 4 147 3 133 8.52e-26 102
Msa1315930 AT2G27300.1 39.286 140 64 6 10 146 17 138 1.48e-25 102
Msa1315930 AT1G01720.1 40.667 150 66 6 1 147 1 130 1.95e-25 101
Msa1315930 AT1G02250.1 39.041 146 71 4 8 150 4 134 3.46e-25 102
Msa1315930 AT2G24430.2 42.361 144 63 6 6 146 15 141 3.55e-25 101
Msa1315930 AT2G24430.1 42.361 144 63 6 6 146 15 141 3.55e-25 101
Msa1315930 AT5G39610.1 40.881 159 69 8 2 157 15 151 5.25e-25 100
Msa1315930 AT3G44290.1 41.497 147 64 7 3 146 11 138 5.45e-25 101
Msa1315930 AT3G03200.1 41.667 144 64 5 6 146 5 131 6.10e-25 102
Msa1315930 AT1G54330.1 40.816 147 67 4 6 149 5 134 1.58e-24 99.4
Msa1315930 AT5G07680.2 41.667 144 62 7 7 147 3 127 2.03e-24 99.4
Msa1315930 AT5G07680.1 41.667 144 62 7 7 147 17 141 2.45e-24 99.4
Msa1315930 AT1G34180.1 43.571 140 59 6 10 146 19 141 3.68e-24 100
Msa1315930 AT1G34190.1 40.000 140 64 5 10 146 19 141 3.84e-24 100
Msa1315930 AT1G34180.3 43.571 140 59 6 10 146 19 141 4.39e-24 100
Msa1315930 AT5G18270.2 42.361 144 62 7 7 147 21 146 4.92e-24 98.6
Msa1315930 AT3G10480.3 34.807 181 65 6 3 147 23 186 4.94e-24 100
Msa1315930 AT3G29035.1 42.361 144 61 7 7 147 24 148 6.92e-24 97.8
Msa1315930 AT3G04060.1 41.259 143 63 7 7 146 20 144 9.25e-24 97.8
Msa1315930 AT5G08790.1 36.250 160 79 6 1 157 1 140 1.10e-23 96.7
Msa1315930 AT3G04420.2 36.420 162 78 6 8 160 4 149 2.63e-23 95.9
Msa1315930 AT3G04420.1 36.420 162 78 6 8 160 4 149 2.92e-23 96.7
Msa1315930 AT2G17040.1 38.514 148 68 7 10 153 9 137 3.41e-23 95.1
Msa1315930 AT5G18270.1 40.972 144 64 7 7 147 21 146 4.01e-23 95.9
Msa1315930 AT4G27410.2 39.310 145 66 6 6 147 13 138 7.11e-23 94.7
Msa1315930 AT5G09330.5 39.873 158 72 7 5 159 4 141 8.23e-23 96.7
Msa1315930 AT5G09330.2 39.873 158 72 7 5 159 4 141 8.23e-23 96.7
Msa1315930 AT5G09330.4 39.873 158 72 7 5 159 4 141 8.23e-23 96.7
Msa1315930 AT5G09330.3 39.873 158 72 7 5 159 4 141 8.23e-23 96.7
Msa1315930 AT5G09330.1 39.873 158 72 7 5 159 4 141 8.23e-23 96.7
Msa1315930 AT5G04395.1 33.721 172 84 6 5 161 26 182 8.37e-23 92.0
Msa1315930 AT5G39820.1 36.774 155 69 6 10 152 23 160 9.10e-23 95.1
Msa1315930 AT3G15500.1 38.816 152 71 6 6 154 13 145 1.02e-22 94.7
Msa1315930 AT1G77450.1 39.474 152 69 6 7 155 10 141 1.10e-22 93.2
Msa1315930 AT3G04070.2 38.926 149 68 6 5 147 8 139 1.93e-22 94.4
Msa1315930 AT1G32510.1 38.158 152 71 6 3 146 2 138 2.53e-22 93.2
Msa1315930 AT1G52890.1 38.065 155 74 6 3 154 10 145 2.65e-22 93.6
Msa1315930 AT1G76420.1 35.417 144 73 4 6 146 21 147 2.68e-22 94.0
Msa1315930 AT3G04070.1 38.926 149 68 6 5 147 8 139 3.14e-22 94.0
Msa1315930 AT1G69490.1 35.374 147 73 6 3 146 5 132 9.25e-22 91.3
Msa1315930 AT3G12910.1 39.161 143 65 7 10 147 24 149 9.77e-22 91.7
Msa1315930 AT5G13180.1 36.806 144 68 5 7 147 14 137 1.34e-21 90.5
Msa1315930 AT1G26870.1 37.857 140 67 5 10 146 19 141 1.53e-21 92.8
Msa1315930 AT5G63790.1 36.000 150 73 6 1 147 44 173 1.58e-21 91.3
Msa1315930 AT5G63790.2 36.000 150 73 6 1 147 54 183 2.02e-21 91.3
Msa1315930 AT1G71930.2 35.616 146 73 6 5 146 7 135 2.98e-21 90.9
Msa1315930 AT1G71930.1 35.616 146 73 6 5 146 7 135 2.98e-21 90.9
Msa1315930 AT4G27410.3 35.625 160 68 6 6 147 13 155 3.41e-21 90.5
Msa1315930 AT1G34180.2 40.132 152 59 7 10 146 19 153 4.05e-21 92.0
Msa1315930 AT2G43000.1 38.298 141 65 7 10 147 21 142 6.02e-21 89.4
Msa1315930 AT1G34180.4 40.132 152 59 7 10 146 19 153 6.46e-21 91.3
Msa1315930 AT5G66300.1 32.886 149 79 5 4 148 9 140 9.56e-21 89.0
Msa1315930 AT3G04430.1 37.821 156 65 7 11 151 2 140 2.47e-20 85.9
Msa1315930 AT1G56010.2 34.965 143 72 4 7 146 19 143 3.47e-20 87.8
Msa1315930 AT3G61910.1 34.014 147 76 6 5 147 9 138 3.69e-20 87.8
Msa1315930 AT2G02450.1 38.462 143 66 7 7 146 52 175 4.29e-20 88.2
Msa1315930 AT4G36160.1 33.775 151 79 6 1 147 4 137 5.91e-20 87.8
Msa1315930 AT4G36160.3 33.775 151 79 6 1 147 4 137 5.91e-20 87.8
Msa1315930 AT2G02450.2 38.462 143 66 7 7 146 52 175 6.67e-20 88.2
Msa1315930 AT4G36160.2 33.775 151 79 6 1 147 8 141 7.07e-20 87.8
Msa1315930 AT5G62380.2 34.667 150 77 6 1 146 1 133 7.69e-20 87.4
Msa1315930 AT5G62380.1 34.667 150 77 6 1 146 1 133 7.69e-20 87.4
Msa1315930 AT3G15510.1 36.691 139 68 5 11 146 21 142 7.74e-20 87.4
Msa1315930 AT1G01010.1 36.242 149 69 5 9 147 5 137 8.95e-20 87.8
Msa1315930 AT1G61110.1 38.514 148 66 7 7 149 16 143 1.11e-19 86.7
Msa1315930 AT1G12260.2 34.000 150 78 6 1 146 1 133 1.24e-19 86.7
Msa1315930 AT2G33480.1 36.806 144 66 6 7 147 15 136 1.37e-19 85.5
Msa1315930 AT2G33480.2 36.806 144 66 6 7 147 15 136 1.44e-19 85.1
Msa1315930 AT1G62700.1 35.333 150 76 6 1 146 1 133 1.59e-19 86.7
Msa1315930 AT1G62700.2 35.333 150 76 6 1 146 1 133 1.59e-19 86.7
Msa1315930 AT1G12260.1 34.000 150 78 6 1 146 1 133 1.71e-19 86.7
Msa1315930 AT5G64530.2 34.932 146 67 6 7 152 3 120 2.18e-19 82.4
Msa1315930 AT4G28530.1 32.184 174 74 6 2 152 5 157 2.30e-19 85.9
Msa1315930 AT5G64060.1 30.660 212 111 9 5 200 4 195 3.43e-19 85.5
Msa1315930 AT5G64530.1 34.932 146 67 6 7 152 3 120 3.53e-19 82.4
Msa1315930 AT2G18060.3 34.667 150 73 7 4 147 6 136 5.03e-19 85.1
Msa1315930 AT2G18060.1 34.667 150 73 7 4 147 6 136 5.03e-19 85.1
Msa1315930 AT3G12977.1 34.247 146 72 6 5 146 16 141 5.88e-19 84.0
Msa1315930 AT1G02220.1 34.375 160 81 6 8 160 4 146 1.00e-18 84.7
Msa1315930 AT3G44350.1 31.973 147 80 5 7 148 5 136 2.01e-18 79.7
Msa1315930 AT3G44350.2 28.571 175 92 5 7 176 5 151 2.30e-18 81.6
Msa1315930 AT5G22380.1 33.562 146 76 5 9 148 7 137 2.63e-18 81.3
Msa1315930 AT2G46770.1 33.562 146 76 6 5 146 14 142 6.65e-18 82.0
Msa1315930 AT1G33280.1 33.784 148 77 6 3 146 4 134 1.07e-17 80.9
Msa1315930 AT4G10350.1 33.784 148 77 6 3 146 5 135 2.98e-17 80.1
Msa1315930 AT1G79580.3 35.172 145 74 6 6 146 16 144 4.44e-17 79.7
Msa1315930 AT1G79580.5 35.172 145 74 6 6 146 16 144 4.44e-17 79.7
Msa1315930 AT1G79580.4 35.172 145 74 6 6 146 16 144 4.44e-17 79.7
Msa1315930 AT1G79580.2 35.172 145 74 6 6 146 16 144 4.44e-17 79.7
Msa1315930 AT1G79580.1 35.172 145 74 6 6 146 16 144 4.44e-17 79.7
Msa1315930 AT1G32870.1 37.857 140 65 5 10 146 13 133 5.70e-17 80.1
Msa1315930 AT1G32870.2 37.857 140 65 5 10 146 13 133 6.05e-17 79.7
Msa1315930 AT1G32870.3 37.857 140 65 5 10 146 49 169 6.92e-17 79.7
Msa1315930 AT5G14000.2 33.103 145 71 5 7 146 15 138 8.94e-15 70.1
Msa1315930 AT1G32770.1 31.973 147 79 6 4 146 13 142 1.01e-14 72.8
Msa1315930 AT5G14000.1 33.103 145 71 5 7 146 15 138 2.00e-14 70.1
Msa1315930 AT1G52880.1 37.086 151 67 8 11 154 21 150 1.22e-13 69.3
Msa1315930 AT4G29230.2 29.834 181 103 8 6 168 46 220 4.52e-12 65.5
Msa1315930 AT4G29230.1 29.834 181 103 8 6 168 47 221 4.65e-12 65.5
Msa1315930 AT4G29230.3 30.968 155 88 6 6 147 47 195 5.29e-12 65.1
Msa1315930 AT3G56530.1 33.103 145 76 7 6 146 51 178 7.20e-11 61.6

Find 41 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATAACCATCTTCGGTTT+TGG 0.242020 8_4:-15523030 None:intergenic
CCAAAACCGAAGATGGTTAT+TGG 0.260583 8_4:+15523030 Msa1315930:CDS
TTCTTCCCCTGAATTGAATA+TGG 0.261808 8_4:+15527092 Msa1315930:CDS
TTCGTTCGTTGATTCAATTT+TGG 0.274129 8_4:+15527251 Msa1315930:CDS
AAATCTTCCATATTCAATTC+AGG 0.275499 8_4:-15527099 None:intergenic
TACCAAGCAACTTGTGATTT+AGG 0.276773 8_4:-15522678 None:intergenic
CTATGCACCATGGGATTTAC+CGG 0.320849 8_4:+15522747 Msa1315930:CDS
CTGTCCTCTTCAAGAGCTTC+AGG 0.336996 8_4:-15527216 None:intergenic
GCAACACATACCTTGTTATC+AGG 0.347353 8_4:-15523188 None:intergenic
AACGGTACCAACATTGTTAT+AGG 0.378621 8_4:+15523086 Msa1315930:CDS
TGTTGAACTTCATGAGTTCA+AGG 0.385754 8_4:-15522950 None:intergenic
ATCAACATGAAAAGACCAAC+TGG 0.400465 8_4:+15523138 Msa1315930:CDS
ATGCTAAATTCCTCTTCCTT+CGG 0.407304 8_4:-15527135 None:intergenic
GGTCTGAATCTATAACCTAT+AGG 0.416888 8_4:-15522628 None:intergenic
GATCTTCCAATAACCATCTT+CGG 0.420218 8_4:-15523036 None:intergenic
AGCATTGTCCAAGGTGAAAT+CGG 0.446186 8_4:+15522899 Msa1315930:intron
CTCACAAGTTCTTGATCTGT+TGG 0.457501 8_4:-15522649 None:intergenic
AATCTTCCATATTCAATTCA+GGG 0.466548 8_4:-15527098 None:intergenic
TACCTAAATCACAAGTTGCT+TGG 0.491048 8_4:+15522676 Msa1315930:CDS
ACCTATAGGCATTGAAGTTG+AGG 0.493740 8_4:-15522614 None:intergenic
ACCTCAACTTCAATGCCTAT+AGG 0.499800 8_4:+15522613 Msa1315930:CDS
TGAAATCGGATGACAAAGAA+TGG 0.513259 8_4:+15522913 Msa1315930:CDS
ACCAAAACCAAAACCGAAGA+TGG 0.514791 8_4:+15523023 Msa1315930:CDS
AGCATAAATTCACTGCTACA+AGG 0.522752 8_4:+15527153 Msa1315930:CDS
GATCGTGAAATCAAGACAAA+CGG 0.547403 8_4:+15523068 Msa1315930:CDS
CGTGTTATTAGCATTGTCCA+AGG 0.553292 8_4:+15522890 Msa1315930:intron
GATGGTTATTGGAAGATCAC+TGG 0.556928 8_4:+15523041 Msa1315930:CDS
ATCTTACCCGGTAAATCCCA+TGG 0.558835 8_4:-15522754 None:intergenic
ACATACCTTGTTATCAGGAA+AGG 0.564840 8_4:-15523183 None:intergenic
CTTGAGAACGAAAACAGCAT+TGG 0.575656 8_4:+15527183 Msa1315930:CDS
TTCAACCTTTCCTGATAACA+AGG 0.579529 8_4:+15523178 Msa1315930:CDS
TTTGTCATCCGATTTCACCT+TGG 0.579656 8_4:-15522907 None:intergenic
GTTGATTATCATAGTAAACA+AGG 0.588180 8_4:-15523121 None:intergenic
ATCTTCCATATTCAATTCAG+GGG 0.593727 8_4:-15527097 None:intergenic
TCTACCTGAAGCTCTTGAAG+AGG 0.600234 8_4:+15527212 Msa1315930:CDS
TAGTTTAAAAGTTGAACATG+AGG 0.608519 8_4:-15522727 None:intergenic
ATACTCATGCATAACCCAGT+TGG 0.619724 8_4:-15523153 None:intergenic
TATGCACCATGGGATTTACC+GGG 0.653252 8_4:+15522748 Msa1315930:CDS
AGTTCAACAAAAGCAAACCA+AGG 0.671016 8_4:+15522964 Msa1315930:CDS
TTGATTATCATAGTAAACAA+GGG 0.677585 8_4:-15523120 None:intergenic
TCAACATGAAAAGACCAACT+GGG 0.701563 8_4:+15523139 Msa1315930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAATTATTTATATT+TGG + chr8_4:15526752-15526771 Msa1315930:intron 0.0%
!!! AAGTTTTAAAAATTTCAAAT+AGG + chr8_4:15523667-15523686 Msa1315930:intron 10.0%
!!! TATTTTTATTTTTTGCATTG+AGG - chr8_4:15522793-15522812 None:intergenic 15.0%
!!! TGCATTATTTTATTTTGAAA+AGG + chr8_4:15523208-15523227 Msa1315930:CDS 15.0%
!! ATTGAAGATAAAAAGATAAA+TGG - chr8_4:15524502-15524521 None:intergenic 15.0%
!!! AAAACTTTGAAAAATTACAT+AGG - chr8_4:15524526-15524545 None:intergenic 15.0%
!!! TAATTTTTCAAAGTTTTGTT+GGG + chr8_4:15524529-15524548 Msa1315930:intron 15.0%
!!! AATGATGATTTGAATTTTTT+TGG + chr8_4:15525062-15525081 Msa1315930:intron 15.0%
!! ATATGTTTGATTATTTGATT+CGG + chr8_4:15525290-15525309 Msa1315930:intron 15.0%
!! TTGATTTCTATTATTCATAT+TGG + chr8_4:15525701-15525720 Msa1315930:intron 15.0%
!!! TGACATATTTAATTGTATTT+TGG + chr8_4:15526400-15526419 Msa1315930:intron 15.0%
!!! AAAGACATATTACTTTTTAA+AGG + chr8_4:15526946-15526965 Msa1315930:intron 15.0%
!!! AAGACATATTACTTTTTAAA+GGG + chr8_4:15526947-15526966 Msa1315930:intron 15.0%
!! TTTAATGGGGTTATATTAAA+TGG + chr8_4:15522834-15522853 Msa1315930:intron 20.0%
!!! TTAGTTTTTCTATTAAACCT+TGG - chr8_4:15522984-15523003 None:intergenic 20.0%
!! TTGATTATCATAGTAAACAA+GGG - chr8_4:15523123-15523142 None:intergenic 20.0%
!! TATAATGTTGTTATATACTC+TGG + chr8_4:15523243-15523262 Msa1315930:intron 20.0%
!! ATAATGTTGTTATATACTCT+GGG + chr8_4:15523244-15523263 Msa1315930:intron 20.0%
!!! AAGCAATTTTAATCAAGTAT+TGG - chr8_4:15523294-15523313 None:intergenic 20.0%
!! ATCTAAAGAAAAATCAAACA+CGG - chr8_4:15523353-15523372 None:intergenic 20.0%
!! ATTGACTAAAAATTCATCAA+AGG - chr8_4:15523435-15523454 None:intergenic 20.0%
!!! ATGACTTTTTATTTATGACT+AGG + chr8_4:15523485-15523504 Msa1315930:intron 20.0%
!!! TGACTTTTTATTTATGACTA+GGG + chr8_4:15523486-15523505 Msa1315930:intron 20.0%
!! AAAACTTAAAAGACTAACTT+GGG - chr8_4:15523654-15523673 None:intergenic 20.0%
!! TAAAACTTAAAAGACTAACT+TGG - chr8_4:15523655-15523674 None:intergenic 20.0%
!! GAAATAGTTTATCAACTAAA+AGG - chr8_4:15524059-15524078 None:intergenic 20.0%
!! GAAATAGTTTATCAACTAAA+AGG + chr8_4:15524059-15524078 Msa1315930:intron 20.0%
!!! AAGTTTCTAAAGTTTCAAAT+AGG - chr8_4:15524086-15524105 None:intergenic 20.0%
!!! TTGAAACTTTAGAAACTTAA+AGG + chr8_4:15524088-15524107 Msa1315930:intron 20.0%
!!! TTGAAACTTTTGAAACTTAA+AGG + chr8_4:15524148-15524167 Msa1315930:intron 20.0%
!! TGTATATTGAATTAAATCCA+CGG - chr8_4:15524217-15524236 None:intergenic 20.0%
!!! ATTGATTTTTCCATCTAAAA+AGG + chr8_4:15524455-15524474 Msa1315930:intron 20.0%
!!! TTGATTTTTCCATCTAAAAA+GGG + chr8_4:15524456-15524475 Msa1315930:intron 20.0%
!!! GTAATTTTTCAAAGTTTTGT+TGG + chr8_4:15524528-15524547 Msa1315930:intron 20.0%
!! TGAAAAAAAAAAGAAAGAAG+AGG + chr8_4:15524670-15524689 Msa1315930:intron 20.0%
!!! CATTTTTAGTTTCTTGTTTA+CGG + chr8_4:15524738-15524757 Msa1315930:intron 20.0%
!!! TTTTTTTTAGCTCTCTTTAT+TGG + chr8_4:15525138-15525157 Msa1315930:intron 20.0%
!! GAATAAACCATCAATTTAAT+AGG - chr8_4:15526123-15526142 None:intergenic 20.0%
!! AAAATCATGTTTAAACTCAT+AGG - chr8_4:15526479-15526498 None:intergenic 20.0%
!! ATGTAAAAATAAGATAAAGC+TGG + chr8_4:15526569-15526588 Msa1315930:intron 20.0%
!! GAGAATTGAATGTAAAAAAA+TGG - chr8_4:15526654-15526673 None:intergenic 20.0%
!!! ATCTCACTTTTAAACAAAAA+CGG - chr8_4:15526731-15526750 None:intergenic 20.0%
!!! TGATTTTATAATAACCACAA+AGG + chr8_4:15526863-15526882 Msa1315930:intron 20.0%
!!! GATTTTATAATAACCACAAA+GGG + chr8_4:15526864-15526883 Msa1315930:intron 20.0%
!! TGCATAACATAAATTCAAAA+GGG - chr8_4:15527028-15527047 None:intergenic 20.0%
!! ATGCATAACATAAATTCAAA+AGG - chr8_4:15527029-15527048 None:intergenic 20.0%
! TAGTTTAAAAGTTGAACATG+AGG - chr8_4:15522730-15522749 None:intergenic 25.0%
!!! TTTTATTTTTTGCATTGAGG+AGG - chr8_4:15522790-15522809 None:intergenic 25.0%
!! TACATGTTTTCCTACTTTAA+TGG + chr8_4:15522819-15522838 Msa1315930:intron 25.0%
!! ACATGTTTTCCTACTTTAAT+GGG + chr8_4:15522820-15522839 Msa1315930:intron 25.0%
! TAATATAACCCCATTAAAGT+AGG - chr8_4:15522832-15522851 None:intergenic 25.0%
!! TTTTATGCCTATAACAATGT+TGG - chr8_4:15523096-15523115 None:intergenic 25.0%
! GTTGATTATCATAGTAAACA+AGG - chr8_4:15523124-15523143 None:intergenic 25.0%
! TGATTAAAATTGCTTCTCTT+TGG + chr8_4:15523299-15523318 Msa1315930:intron 25.0%
! CTTTCTAATGTCAAAATGAT+CGG - chr8_4:15523385-15523404 None:intergenic 25.0%
! CATGCAATTTGAGAAAAATT+AGG - chr8_4:15523468-15523487 None:intergenic 25.0%
! AACTGTTTGCAAGAAATTTA+AGG + chr8_4:15523530-15523549 Msa1315930:intron 25.0%
! ACTGTTTGCAAGAAATTTAA+GGG + chr8_4:15523531-15523550 Msa1315930:intron 25.0%
! CAAACTAAAAGGAACAAAAA+TGG - chr8_4:15523564-15523583 None:intergenic 25.0%
! GAGAATTATGTCAAACTAAA+AGG - chr8_4:15523575-15523594 None:intergenic 25.0%
! TAATTATTAACTGACTAGCA+AGG + chr8_4:15524028-15524047 Msa1315930:intron 25.0%
! AATTATTAACTGACTAGCAA+GGG + chr8_4:15524029-15524048 Msa1315930:intron 25.0%
! GCAAATTCTATCAAACTAAA+AGG + chr8_4:15524119-15524138 Msa1315930:intron 25.0%
! TAATTCAATATACAAGTGAG+TGG + chr8_4:15524223-15524242 Msa1315930:intron 25.0%
! AATTCAATATACAAGTGAGT+GGG + chr8_4:15524224-15524243 Msa1315930:intron 25.0%
!!! ATCAATTTGGTGTTTTGTTA+TGG + chr8_4:15524979-15524998 Msa1315930:intron 25.0%
! TGGTGTTTCTTTGAATAATT+TGG + chr8_4:15524999-15525018 Msa1315930:intron 25.0%
! ATTAAGAGAAGAACAATCAA+AGG - chr8_4:15525264-15525283 None:intergenic 25.0%
! TTGATTGTTCTTCTCTTAAT+TGG + chr8_4:15525264-15525283 Msa1315930:intron 25.0%
!!! TTTATTTTGATTCCTCTCTT+TGG + chr8_4:15525313-15525332 Msa1315930:intron 25.0%
! ATGAACATGTGTTTATAAGT+GGG + chr8_4:15525376-15525395 Msa1315930:intron 25.0%
! TGATACCATATTAGAAATCT+TGG - chr8_4:15525850-15525869 None:intergenic 25.0%
! ATGAACATGAGTTTATAAGT+GGG + chr8_4:15526011-15526030 Msa1315930:intron 25.0%
! TCCTATTCCTATTAAATTGA+TGG + chr8_4:15526113-15526132 Msa1315930:intron 25.0%
! ACCATCAATTTAATAGGAAT+AGG - chr8_4:15526117-15526136 None:intergenic 25.0%
!! AACATATATTTTCTCTTTGC+AGG + chr8_4:15526170-15526189 Msa1315930:intron 25.0%
! TAATTCTTTCTGCTCAAATT+TGG - chr8_4:15526357-15526376 None:intergenic 25.0%
! ACATGTTTAAGTCATGTAAA+CGG + chr8_4:15526540-15526559 Msa1315930:intron 25.0%
!! CAGAACTTCAAGAATATTTT+AGG + chr8_4:15526979-15526998 Msa1315930:intron 25.0%
! AATCTTCCATATTCAATTCA+GGG - chr8_4:15527101-15527120 None:intergenic 25.0%
! AAATCTTCCATATTCAATTC+AGG - chr8_4:15527102-15527121 None:intergenic 25.0%
! AACTTTTAAACTATGCACCA+TGG + chr8_4:15522737-15522756 Msa1315930:CDS 30.0%
! ACTTTTAAACTATGCACCAT+GGG + chr8_4:15522738-15522757 Msa1315930:CDS 30.0%
GGTAGAATATTTATCTTACC+CGG - chr8_4:15522769-15522788 None:intergenic 30.0%
! CATGTTTTCCTACTTTAATG+GGG + chr8_4:15522821-15522840 Msa1315930:intron 30.0%
AATGGGGTTATATTAAATGG+TGG + chr8_4:15522837-15522856 Msa1315930:intron 30.0%
ATATTGTCTATAGCTTGAAC+TGG + chr8_4:15523327-15523346 Msa1315930:intron 30.0%
CTACATCAGCATTAGTTAAA+CGG - chr8_4:15523740-15523759 None:intergenic 30.0%
GATCCAAGTCAACAATTTAA+CGG - chr8_4:15523763-15523782 None:intergenic 30.0%
TGTCAAAACACTACGTTTAA+TGG + chr8_4:15523811-15523830 Msa1315930:intron 30.0%
TGTCAAAACGTTACGTTTAA+TGG - chr8_4:15523941-15523960 None:intergenic 30.0%
TTAAATCCACGGTAAATGTT+TGG - chr8_4:15524206-15524225 None:intergenic 30.0%
CAAACATGTGAAAACATGAT+CGG + chr8_4:15524331-15524350 Msa1315930:intron 30.0%
CATGTGTTTGACACTAAAAA+TGG + chr8_4:15524362-15524381 Msa1315930:intron 30.0%
!!! TTTTTCAAAGTTTTGTTGGG+AGG + chr8_4:15524532-15524551 Msa1315930:intron 30.0%
! GTGAAAAAGAGGAAGAATTT+TGG + chr8_4:15524715-15524734 Msa1315930:intron 30.0%
! TTGATCTGGAACAAACATAT+GGG - chr8_4:15524834-15524853 None:intergenic 30.0%
! ATTGATCTGGAACAAACATA+TGG - chr8_4:15524835-15524854 None:intergenic 30.0%
ATATGTTTGTTCCAGATCAA+TGG + chr8_4:15524834-15524853 Msa1315930:intron 30.0%
! TTTATGTCTGTGGTTCTATT+TGG + chr8_4:15524907-15524926 Msa1315930:intron 30.0%
AGCTCTCTTTATTGGTATAT+TGG + chr8_4:15525146-15525165 Msa1315930:intron 30.0%
! ATGTCATCTTTTCTCTAATG+TGG - chr8_4:15525358-15525377 None:intergenic 30.0%
CATGAACATGTGTTTATAAG+TGG + chr8_4:15525375-15525394 Msa1315930:intron 30.0%
TGATACCATCTTATCAATCA+TGG - chr8_4:15525449-15525468 None:intergenic 30.0%
! AAAGCCTATCTAAGATCTAT+TGG + chr8_4:15525468-15525487 Msa1315930:intron 30.0%
TCATCTCTCATATTCAATGT+GGG - chr8_4:15525580-15525599 None:intergenic 30.0%
TGACAATGTGTTTATAAGTG+AGG + chr8_4:15525602-15525621 Msa1315930:intron 30.0%
GACAATGTGTTTATAAGTGA+GGG + chr8_4:15525603-15525622 Msa1315930:intron 30.0%
CTCAACCAAGATTTCTAATA+TGG + chr8_4:15525842-15525861 Msa1315930:intron 30.0%
CATGAACATGAGTTTATAAG+TGG + chr8_4:15526010-15526029 Msa1315930:intron 30.0%
GTCTAATACAACCAAAAAAC+CGG - chr8_4:15526057-15526076 None:intergenic 30.0%
TATTAGACCACGATTGATAA+GGG + chr8_4:15526069-15526088 Msa1315930:intron 30.0%
CTTAATGGAGAAAATTGAGA+TGG + chr8_4:15526212-15526231 Msa1315930:intron 30.0%
AAAATTGAGATGGAAACAGA+AGG + chr8_4:15526222-15526241 Msa1315930:intron 30.0%
AAATTGAGATGGAAACAGAA+GGG + chr8_4:15526223-15526242 Msa1315930:intron 30.0%
AGGATGTATTCACTTACATA+TGG - chr8_4:15526315-15526334 None:intergenic 30.0%
! AATACATCCTCCAAATGTTT+TGG + chr8_4:15526325-15526344 Msa1315930:intron 30.0%
TTGGAGTTAACCAAAACATT+TGG - chr8_4:15526338-15526357 None:intergenic 30.0%
TTGAGCAGAAAGAATTAGTT+AGG + chr8_4:15526360-15526379 Msa1315930:intron 30.0%
GACTTAAACATGTGACATTT+CGG - chr8_4:15526533-15526552 None:intergenic 30.0%
GACATAATACACCAATTGAT+GGG + chr8_4:15526591-15526610 Msa1315930:intron 30.0%
AAAAACTCTCACATATGAAG+GGG - chr8_4:15526618-15526637 None:intergenic 30.0%
CAAAAACTCTCACATATGAA+GGG - chr8_4:15526619-15526638 None:intergenic 30.0%
ACAAAAACTCTCACATATGA+AGG - chr8_4:15526620-15526639 None:intergenic 30.0%
TAATAACCACAAAGGGTTTA+AGG + chr8_4:15526871-15526890 Msa1315930:intron 30.0%
! GATTCTTGCTTCATGTTTTT+AGG + chr8_4:15527065-15527084 Msa1315930:intron 30.0%
ATCTTCCATATTCAATTCAG+GGG - chr8_4:15527100-15527119 None:intergenic 30.0%
!!! TTCGTTCGTTGATTCAATTT+TGG + chr8_4:15527251-15527270 Msa1315930:CDS 30.0%
GGTCTGAATCTATAACCTAT+AGG - chr8_4:15522631-15522650 None:intergenic 35.0%
TACCTAAATCACAAGTTGCT+TGG + chr8_4:15522676-15522695 Msa1315930:CDS 35.0%
TACCAAGCAACTTGTGATTT+AGG - chr8_4:15522681-15522700 None:intergenic 35.0%
TGAAATCGGATGACAAAGAA+TGG + chr8_4:15522913-15522932 Msa1315930:CDS 35.0%
TGTTGAACTTCATGAGTTCA+AGG - chr8_4:15522953-15522972 None:intergenic 35.0%
AGTTCAACAAAAGCAAACCA+AGG + chr8_4:15522964-15522983 Msa1315930:CDS 35.0%
!!! TTCGGTTTTGGTTTTGGTTT+CGG - chr8_4:15523021-15523040 None:intergenic 35.0%
GATCTTCCAATAACCATCTT+CGG - chr8_4:15523039-15523058 None:intergenic 35.0%
GATCGTGAAATCAAGACAAA+CGG + chr8_4:15523068-15523087 Msa1315930:CDS 35.0%
AACGGTACCAACATTGTTAT+AGG + chr8_4:15523086-15523105 Msa1315930:CDS 35.0%
ATCAACATGAAAAGACCAAC+TGG + chr8_4:15523138-15523157 Msa1315930:CDS 35.0%
TCAACATGAAAAGACCAACT+GGG + chr8_4:15523139-15523158 Msa1315930:CDS 35.0%
TTCAACCTTTCCTGATAACA+AGG + chr8_4:15523178-15523197 Msa1315930:CDS 35.0%
! ACATACCTTGTTATCAGGAA+AGG - chr8_4:15523186-15523205 None:intergenic 35.0%
! TACTGATTGTGTCACTAAAG+TGG + chr8_4:15523406-15523425 Msa1315930:intron 35.0%
GGGAATTCTGTCAAACTAAA+AGG - chr8_4:15523634-15523653 None:intergenic 35.0%
! TAGCCGTTAAATTGTTGACT+TGG + chr8_4:15523757-15523776 Msa1315930:intron 35.0%
AAAGAACCAAACATTTACCG+TGG + chr8_4:15524197-15524216 Msa1315930:intron 35.0%
! TTTTTCCAGCTTGTGAAGTT+GGG + chr8_4:15524247-15524266 Msa1315930:intron 35.0%
TTTGAGAGCTTACTATTCCA+CGG - chr8_4:15524287-15524306 None:intergenic 35.0%
! CGATCATGTTTTCACATGTT+TGG - chr8_4:15524333-15524352 None:intergenic 35.0%
AACATTGATATGCGCATTCA+TGG - chr8_4:15524400-15524419 None:intergenic 35.0%
AACACTTGAGCTGAAATGTT+TGG + chr8_4:15524631-15524650 Msa1315930:intron 35.0%
ACACTTGAGCTGAAATGTTT+GGG + chr8_4:15524632-15524651 Msa1315930:intron 35.0%
ATCTGACTCTTGTGAAAAAG+AGG + chr8_4:15524704-15524723 Msa1315930:intron 35.0%
GAAATAGTATACTCCACAGA+GGG - chr8_4:15524776-15524795 None:intergenic 35.0%
!! TGGTTTGTTCGTACTAATGT+TGG + chr8_4:15524861-15524880 Msa1315930:intron 35.0%
TTTATGTTCTGCCATGATTG+TGG + chr8_4:15524884-15524903 Msa1315930:intron 35.0%
ACAGACATAAACCACAATCA+TGG - chr8_4:15524898-15524917 None:intergenic 35.0%
ATGATTGTGGTTTATGTCTG+TGG + chr8_4:15524897-15524916 Msa1315930:intron 35.0%
! TTGAGTATTTTCGTTCGTCA+GGG + chr8_4:15524955-15524974 Msa1315930:intron 35.0%
AAGAGAAGAACAATCAAAGG+AGG - chr8_4:15525261-15525280 None:intergenic 35.0%
GAATAGAAACAACCAAAGAG+AGG - chr8_4:15525328-15525347 None:intergenic 35.0%
ACAATCCTCACTTCATAAGT+TGG + chr8_4:15525399-15525418 Msa1315930:intron 35.0%
ACAAACCAACTTATGAAGTG+AGG - chr8_4:15525407-15525426 None:intergenic 35.0%
!! TCACTTCATAAGTTGGTTTG+TGG + chr8_4:15525406-15525425 Msa1315930:intron 35.0%
!! CACTTCATAAGTTGGTTTGT+GGG + chr8_4:15525407-15525426 Msa1315930:intron 35.0%
!! ACTTCATAAGTTGGTTTGTG+GGG + chr8_4:15525408-15525427 Msa1315930:intron 35.0%
CTCAACCATGATTGATAAGA+TGG + chr8_4:15525441-15525460 Msa1315930:intron 35.0%
TGGTCCAATAGATCTTAGAT+AGG - chr8_4:15525475-15525494 None:intergenic 35.0%
!! AATGATGGATGATCTGATAG+CGG - chr8_4:15525513-15525532 None:intergenic 35.0%
ATCATCCATCATTTATGTCC+AGG + chr8_4:15525520-15525539 Msa1315930:intron 35.0%
GTCATCTCTCATATTCAATG+TGG - chr8_4:15525581-15525600 None:intergenic 35.0%
!!! ACAAGTTGGTTTTTTGAGGT+TGG + chr8_4:15525639-15525658 Msa1315930:intron 35.0%
!!! TTGGTTTTTTGAGGTTGGTT+AGG + chr8_4:15525644-15525663 Msa1315930:intron 35.0%
AAACTCTTATCAATCGTGGT+TGG - chr8_4:15525671-15525690 None:intergenic 35.0%
CAAGAAACTCTTATCAATCG+TGG - chr8_4:15525675-15525694 None:intergenic 35.0%
TGACCATGTGTTTAAAAGTG+AGG + chr8_4:15525776-15525795 Msa1315930:intron 35.0%
GACCATGTGTTTAAAAGTGA+GGG + chr8_4:15525777-15525796 Msa1315930:intron 35.0%
!! TTCCCTCACTTTTAAACACA+TGG - chr8_4:15525782-15525801 None:intergenic 35.0%
!! GTTTTGTTCGTGGACATAAA+TGG - chr8_4:15525932-15525951 None:intergenic 35.0%
!! GCACTATTATGTTTTGTTCG+TGG - chr8_4:15525942-15525961 None:intergenic 35.0%
CGAACAAAACATAATAGTGC+TGG + chr8_4:15525942-15525961 Msa1315930:intron 35.0%
TGTGTTAAAGAGTCACACTT+CGG + chr8_4:15525976-15525995 Msa1315930:intron 35.0%
ACAATCCTTACATCACAAAC+CGG + chr8_4:15526035-15526054 Msa1315930:intron 35.0%
!! AAAAACCGGTTTGTGATGTA+AGG - chr8_4:15526043-15526062 None:intergenic 35.0%
!!! TACATCACAAACCGGTTTTT+TGG + chr8_4:15526043-15526062 Msa1315930:intron 35.0%
GTATTAGACCACGATTGATA+AGG + chr8_4:15526068-15526087 Msa1315930:intron 35.0%
TGCTATGTTTCCAAAGATAG+AGG - chr8_4:15526277-15526296 None:intergenic 35.0%
! CTTTGGAAACATAGCAACAA+TGG + chr8_4:15526281-15526300 Msa1315930:intron 35.0%
GAGTTAACCAAAACATTTGG+AGG - chr8_4:15526335-15526354 None:intergenic 35.0%
! GCAAATCTTAGGTTCAAGTT+GGG - chr8_4:15526454-15526473 None:intergenic 35.0%
TGCAAATCTTAGGTTCAAGT+TGG - chr8_4:15526455-15526474 None:intergenic 35.0%
ACTCATAGGTTGCAAATCTT+AGG - chr8_4:15526465-15526484 None:intergenic 35.0%
GGACATAATACACCAATTGA+TGG + chr8_4:15526590-15526609 Msa1315930:intron 35.0%
ATTAGACCTTAAACCCTTTG+TGG - chr8_4:15526880-15526899 None:intergenic 35.0%
! GGGTTTAAGGTCTAATTTCA+AGG + chr8_4:15526884-15526903 Msa1315930:intron 35.0%
TTCTTCCCCTGAATTGAATA+TGG + chr8_4:15527092-15527111 Msa1315930:CDS 35.0%
TTTCTTTCCAAAAACACCGA+AGG + chr8_4:15527119-15527138 Msa1315930:CDS 35.0%
ATGCTAAATTCCTCTTCCTT+CGG - chr8_4:15527138-15527157 None:intergenic 35.0%
AGCATAAATTCACTGCTACA+AGG + chr8_4:15527153-15527172 Msa1315930:CDS 35.0%
!! GTTGATTCAATTTTGGACGA+TGG + chr8_4:15527258-15527277 Msa1315930:CDS 35.0%
ACCTCAACTTCAATGCCTAT+AGG + chr8_4:15522613-15522632 Msa1315930:CDS 40.0%
!! ACCTATAGGCATTGAAGTTG+AGG - chr8_4:15522617-15522636 None:intergenic 40.0%
CTCACAAGTTCTTGATCTGT+TGG - chr8_4:15522652-15522671 None:intergenic 40.0%
! CGTGTTATTAGCATTGTCCA+AGG + chr8_4:15522890-15522909 Msa1315930:intron 40.0%
AGCATTGTCCAAGGTGAAAT+CGG + chr8_4:15522899-15522918 Msa1315930:intron 40.0%
TTTGTCATCCGATTTCACCT+TGG - chr8_4:15522910-15522929 None:intergenic 40.0%
!!! TTGGTTTTGGTTTCGGGTTT+GGG - chr8_4:15523014-15523033 None:intergenic 40.0%
!!! TTTGGTTTTGGTTTCGGGTT+TGG - chr8_4:15523015-15523034 None:intergenic 40.0%
!!! TCGGTTTTGGTTTTGGTTTC+GGG - chr8_4:15523020-15523039 None:intergenic 40.0%
ACCAAAACCAAAACCGAAGA+TGG + chr8_4:15523023-15523042 Msa1315930:CDS 40.0%
!!! ACCATCTTCGGTTTTGGTTT+TGG - chr8_4:15523027-15523046 None:intergenic 40.0%
! CCAATAACCATCTTCGGTTT+TGG - chr8_4:15523033-15523052 None:intergenic 40.0%
CCAAAACCGAAGATGGTTAT+TGG + chr8_4:15523030-15523049 Msa1315930:CDS 40.0%
GATGGTTATTGGAAGATCAC+TGG + chr8_4:15523041-15523060 Msa1315930:CDS 40.0%
ATACTCATGCATAACCCAGT+TGG - chr8_4:15523156-15523175 None:intergenic 40.0%
! GCAACACATACCTTGTTATC+AGG - chr8_4:15523191-15523210 None:intergenic 40.0%
TAACTGACTAGCAAGGGTAA+CGG + chr8_4:15524035-15524054 Msa1315930:intron 40.0%
! GTTTTTCCAGCTTGTGAAGT+TGG + chr8_4:15524246-15524265 Msa1315930:intron 40.0%
! TTTTCCAGCTTGTGAAGTTG+GGG + chr8_4:15524248-15524267 Msa1315930:intron 40.0%
ACACTAAAAATGGCGTTCCT+TGG + chr8_4:15524372-15524391 Msa1315930:intron 40.0%
! CGTTGCTAACCCTTTTTAGA+TGG - chr8_4:15524468-15524487 None:intergenic 40.0%
! CTCCTAAACGATTCGTCTTT+TGG + chr8_4:15524597-15524616 Msa1315930:intron 40.0%
CACCAAAAGACGAATCGTTT+AGG - chr8_4:15524602-15524621 None:intergenic 40.0%
! CTAAACGATTCGTCTTTTGG+TGG + chr8_4:15524600-15524619 Msa1315930:intron 40.0%
GGAAATAGTATACTCCACAG+AGG - chr8_4:15524777-15524796 None:intergenic 40.0%
GTGGAGTATACTATTTCCCA+CGG + chr8_4:15524779-15524798 Msa1315930:intron 40.0%
! TATTTCCCACGGCTTGATTT+TGG + chr8_4:15524790-15524809 Msa1315930:intron 40.0%
! ATTTCCCACGGCTTGATTTT+GGG + chr8_4:15524791-15524810 Msa1315930:intron 40.0%
TGTTCCAGATCAATGGTGTT+TGG + chr8_4:15524841-15524860 Msa1315930:intron 40.0%
CAAACCAAACACCATTGATC+TGG - chr8_4:15524848-15524867 None:intergenic 40.0%
! GTTGAGTATTTTCGTTCGTC+AGG + chr8_4:15524954-15524973 Msa1315930:intron 40.0%
AGAAGAACAATCAAAGGAGG+AGG - chr8_4:15525258-15525277 None:intergenic 40.0%
TGGTTCCTGGACATAAATGA+TGG - chr8_4:15525528-15525547 None:intergenic 40.0%
AAAAACCAACTTGTGAGGTG+AGG - chr8_4:15525633-15525652 None:intergenic 40.0%
CCTCAAAAAACCAACTTGTG+AGG - chr8_4:15525638-15525657 None:intergenic 40.0%
!!! CCTCACAAGTTGGTTTTTTG+AGG + chr8_4:15525635-15525654 Msa1315930:intron 40.0%
CCATCTCTTATCCCACTATT+GGG - chr8_4:15525754-15525773 None:intergenic 40.0%
ACCATCTCTTATCCCACTAT+TGG - chr8_4:15525755-15525774 None:intergenic 40.0%
AGCCTTCGTTAAGATCCATT+GGG + chr8_4:15525871-15525890 Msa1315930:intron 40.0%
CTGCTATTAGGTTTCGCTAT+CGG + chr8_4:15525898-15525917 Msa1315930:intron 40.0%
TGCTATTAGGTTTCGCTATC+GGG + chr8_4:15525899-15525918 Msa1315930:intron 40.0%
TGTTCGTGGACATAAATGGT+CGG - chr8_4:15525928-15525947 None:intergenic 40.0%
!! CATAATAGTGCTGGTCAAGA+CGG + chr8_4:15525951-15525970 Msa1315930:intron 40.0%
!! ATAATAGTGCTGGTCAAGAC+GGG + chr8_4:15525952-15525971 Msa1315930:intron 40.0%
CAAGAAACCCTTATCAATCG+TGG - chr8_4:15526079-15526098 None:intergenic 40.0%
!! TATTGTCCTGTGTCGCTTAA+TGG + chr8_4:15526197-15526216 Msa1315930:intron 40.0%
! TTTTCTCCATTAAGCGACAC+AGG - chr8_4:15526206-15526225 None:intergenic 40.0%
CTTGAGAACGAAAACAGCAT+TGG + chr8_4:15527183-15527202 Msa1315930:CDS 40.0%
CTATGCACCATGGGATTTAC+CGG + chr8_4:15522747-15522766 Msa1315930:CDS 45.0%
TATGCACCATGGGATTTACC+GGG + chr8_4:15522748-15522767 Msa1315930:CDS 45.0%
ATCTTACCCGGTAAATCCCA+TGG - chr8_4:15522757-15522776 None:intergenic 45.0%
TATTTCACCGTTACCCATGC+TGG + chr8_4:15523708-15523727 Msa1315930:intron 45.0%
TAAACGGATACTGCCAGCAT+GGG - chr8_4:15523724-15523743 None:intergenic 45.0%
TTAAACGGATACTGCCAGCA+TGG - chr8_4:15523725-15523744 None:intergenic 45.0%
!! AACGTAACGTTTTGACACCC+TGG + chr8_4:15523944-15523963 Msa1315930:intron 45.0%
! GACACCCTGGAGCTTTTAAA+AGG + chr8_4:15523957-15523976 Msa1315930:intron 45.0%
!! GCTGCCTTTTAAAAGCTCCA+GGG - chr8_4:15523964-15523983 None:intergenic 45.0%
! GGGGATCACAATTTTTACCG+TGG + chr8_4:15524267-15524286 Msa1315930:intron 45.0%
TATGCGCATTCATGGAACCA+AGG - chr8_4:15524392-15524411 None:intergenic 45.0%
GTTTGAAAAGACTCCCTCTG+TGG + chr8_4:15524760-15524779 Msa1315930:intron 45.0%
TAGACCCAAAATCAAGCCGT+GGG - chr8_4:15524798-15524817 None:intergenic 45.0%
!! TTGGTTTGTGGGGTTGTGTT+AGG + chr8_4:15525418-15525437 Msa1315930:intron 45.0%
AGCGGAAACATGATAGCATG+TGG - chr8_4:15525495-15525514 None:intergenic 45.0%
GTACTATTGAGCTTGGTTCC+TGG - chr8_4:15525541-15525560 None:intergenic 45.0%
GGAACCAAGCTCAATAGTAC+CGG + chr8_4:15525541-15525560 Msa1315930:intron 45.0%
TGTGGGACTCTTTAACACAC+CGG - chr8_4:15525563-15525582 None:intergenic 45.0%
! GCTTGGTTCGTGGACATAAA+TGG - chr8_4:15525732-15525751 None:intergenic 45.0%
TCTTATCCCACTATTGGGCT+TGG - chr8_4:15525749-15525768 None:intergenic 45.0%
! CCCAATAGTGGGATAAGAGA+TGG + chr8_4:15525751-15525770 Msa1315930:intron 45.0%
CTAACACAACCCCACGAAAT+CGG - chr8_4:15525821-15525840 None:intergenic 45.0%
GAGCCTTCGTTAAGATCCAT+TGG + chr8_4:15525870-15525889 Msa1315930:intron 45.0%
GACCCAATGGATCTTAACGA+AGG - chr8_4:15525876-15525895 None:intergenic 45.0%
CGATAGCGAAACCTAATAGC+AGG - chr8_4:15525900-15525919 None:intergenic 45.0%
!! TAATAGTGCTGGTCAAGACG+GGG + chr8_4:15525953-15525972 Msa1315930:intron 45.0%
GTTTCCAAAGATAGAGGCAG+CGG - chr8_4:15526271-15526290 None:intergenic 45.0%
TATGAAGGGGTCCCATCAAT+TGG - chr8_4:15526605-15526624 None:intergenic 45.0%
TCCAAAAACACCGAAGGAAG+AGG + chr8_4:15527125-15527144 Msa1315930:CDS 45.0%
!!! TCCTCTTCCTTCGGTGTTTT+TGG - chr8_4:15527129-15527148 None:intergenic 45.0%
TCTACCTGAAGCTCTTGAAG+AGG + chr8_4:15527212-15527231 Msa1315930:CDS 45.0%
GATACTGCCAGCATGGGTAA+CGG - chr8_4:15523718-15523737 None:intergenic 50.0%
!! CGCTGCCTTTTAAAAGCTCC+AGG - chr8_4:15523965-15523984 None:intergenic 50.0%
TGATCCCCAACTTCACAAGC+TGG - chr8_4:15524255-15524274 None:intergenic 50.0%
CTAGACCCAAAATCAAGCCG+TGG - chr8_4:15524799-15524818 None:intergenic 50.0%
! CGTTCGTCAGGGCATCAATT+TGG + chr8_4:15524966-15524985 Msa1315930:intron 50.0%
CACACCGGTACTATTGAGCT+TGG - chr8_4:15525548-15525567 None:intergenic 50.0%
GCAATCCTCACCTCACAAGT+TGG + chr8_4:15525625-15525644 Msa1315930:intron 50.0%
CACGAACCAAGCCCAATAGT+GGG + chr8_4:15525740-15525759 Msa1315930:intron 50.0%
! ACCTCACAAGCCGATTTCGT+GGG + chr8_4:15525808-15525827 Msa1315930:intron 50.0%
CCTAATAGCAGGTGACCCAA+TGG - chr8_4:15525889-15525908 None:intergenic 50.0%
CCATTGGGTCACCTGCTATT+AGG + chr8_4:15525886-15525905 Msa1315930:intron 50.0%
CTGTCCTCTTCAAGAGCTTC+AGG - chr8_4:15527219-15527238 None:intergenic 50.0%
! CCACTATTGGGCTTGGTTCG+TGG - chr8_4:15525742-15525761 None:intergenic 55.0%
CCACGAACCAAGCCCAATAG+TGG + chr8_4:15525739-15525758 Msa1315930:intron 55.0%
!! CGAAATCGGCTTGTGAGGTG+AGG - chr8_4:15525807-15525826 None:intergenic 55.0%
! CACCTCACAAGCCGATTTCG+TGG + chr8_4:15525807-15525826 Msa1315930:intron 55.0%
! CCTCACAAGCCGATTTCGTG+GGG + chr8_4:15525809-15525828 Msa1315930:intron 55.0%
CAAAGATAGAGGCAGCGGCA+TGG - chr8_4:15526266-15526285 None:intergenic 55.0%
CATGCCGCTGCCTCTATCTT+TGG + chr8_4:15526264-15526283 Msa1315930:intron 55.0%
!! CCCCACGAAATCGGCTTGTG+AGG - chr8_4:15525812-15525831 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 15522607 15527308 15522607 ID=Msa1315930;Name=Msa1315930
chr8_4 mRNA 15522607 15527308 15522607 ID=Msa1315930-mRNA-1;Parent=Msa1315930;Name=Msa1315930-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|0.5|0.66|3|0|239
chr8_4 exon 15522607 15522769 15522607 ID=Msa1315930-mRNA-1:exon:5988;Parent=Msa1315930-mRNA-1
chr8_4 exon 15522901 15523235 15522901 ID=Msa1315930-mRNA-1:exon:5989;Parent=Msa1315930-mRNA-1
chr8_4 exon 15527087 15527308 15527087 ID=Msa1315930-mRNA-1:exon:5990;Parent=Msa1315930-mRNA-1
chr8_4 CDS 15522607 15522769 15522607 ID=Msa1315930-mRNA-1:cds;Parent=Msa1315930-mRNA-1
chr8_4 CDS 15522901 15523235 15522901 ID=Msa1315930-mRNA-1:cds;Parent=Msa1315930-mRNA-1
chr8_4 CDS 15527087 15527308 15527087 ID=Msa1315930-mRNA-1:cds;Parent=Msa1315930-mRNA-1
Gene Sequence

>Msa1315930

ATGGAGACCTCAACTTCAATGCCTATAGGTTATAGATTCAGACCAACAGATCAAGAACTTGTGAGTCACTACCTAAATCACAAGTTGCTTGGTAATGATTCTATTGTCAACAACATAATACCTCATGTTCAACTTTTAAACTATGCACCATGGGATTTACCGGCATTGTCCAAGGTGAAATCGGATGACAAAGAATGGTTTTTCTTCACTTGCCTTGAACTCATGAAGTTCAACAAAAGCAAACCAAGGTTTAATAGAAAAACTAATATCGAACCCAAACCCGAAACCAAAACCAAAACCGAAGATGGTTATTGGAAGATCACTGGTAAAGATCGTGAAATCAAGACAAACGGTACCAACATTGTTATAGGCATAAAAAAGACCCTTGTTTACTATGATAATCAACATGAAAAGACCAACTGGGTTATGCATGAGTATCATTCAACCTTTCCTGATAACAAGGTATGTGTTGCATTATTTTATTTTGAAAAGGCATGTGTATGTTCTTCCCCTGAATTGAATATGGAAGATTTCTTTCCAAAAACACCGAAGGAAGAGGAATTTAGCATAAATTCACTGCTACAAGGTGCATCTCTTGAGAACGAAAACAGCATTGGACATAATCTACCTGAAGCTCTTGAAGAGGACAGTGCTGATGATTCTTCGTTCGTTGATTCAATTTTGGACGATGGTGTTTCAATTAGTGAAGAAACAAGTTAA
Protein sequence

>Msa1315930

METSTSMPIGYRFRPTDQELVSHYLNHKLLGNDSIVNNIIPHVQLLNYAPWDLPALSKVKSDDKEWFFFTCLELMKFNKSKPRFNRKTNIEPKPETKTKTEDGYWKITGKDREIKTNGTNIVIGIKKTLVYYDNQHEKTNWVMHEYHSTFPDNKVCVALFYFEKACVCSSPELNMEDFFPKTPKEEEFSINSLLQGASLENENSIGHNLPEALEEDSADDSSFVDSILDDGVSISEETS*