AlfalfaGEDB | Msa1315960

M. sativa cultivar zhongmu-4 / Msa1315960

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315960	KYP75561.1	43.333	210	88	5	191	371	49	256	8.99e-39	152

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315960	sp\|F4JN35\|NTL9_ARATH	38.095	147	74	4	191	328	56	194	1.56e-20	96.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315960	A0A151U8J7	43.333	210	88	5	191	371	49	256	4.29e-39	152

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1315960	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315960	MtrunA17_Chr1g0186001	62.609	115	3	1	1	115	1	75	1.57e-33	124
Msa1315960	MtrunA17_Chr8g0345691	38.605	215	102	6	184	371	53	264	9.04e-27	110
Msa1315960	MtrunA17_Chr8g0345671	38.647	207	95	7	195	381	63	257	5.02e-24	102
Msa1315960	MtrunA17_Chr8g0345701	54.082	98	28	3	191	274	55	149	1.70e-23	96.3
Msa1315960	MtrunA17_Chr5g0428991	36.076	158	81	6	195	337	76	228	1.32e-20	94.0
Msa1315960	MtrunA17_Chr2g0321741	39.496	119	67	3	199	314	46	162	3.18e-20	90.9
Msa1315960	MtrunA17_Chr3g0128111	39.516	124	61	5	195	309	93	211	1.47e-19	87.0
Msa1315960	MtrunA17_Chr3g0128151	39.394	132	67	4	195	317	73	200	1.82e-19	90.1
Msa1315960	MtrunA17_Chr5g0400461	40.566	106	52	2	199	293	61	166	3.48e-19	87.8
Msa1315960	MtrunA17_Chr4g0054791	38.889	108	56	2	199	296	61	168	1.78e-18	85.5

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1315960	AT4G35580.2	38.095	147	74	4	191	328	56	194	1.45e-21	97.1
Msa1315960	AT4G35580.3	38.095	147	74	4	191	328	56	194	1.54e-21	96.7
Msa1315960	AT4G35580.1	38.095	147	74	4	191	328	56	194	1.59e-21	96.7
Msa1315960	AT3G49530.2	43.269	104	49	3	195	289	64	166	8.03e-21	94.0
Msa1315960	AT1G33060.2	44.118	102	46	2	195	287	75	174	1.08e-20	94.7
Msa1315960	AT1G33060.1	44.118	102	46	2	195	287	75	174	1.09e-20	94.4
Msa1315960	AT3G49530.1	43.269	104	49	3	195	289	64	166	1.78e-20	93.2
Msa1315960	AT2G27300.1	43.333	90	47	2	199	286	68	155	4.33e-19	87.8
Msa1315960	AT5G24590.2	41.121	107	53	2	195	292	64	169	7.89e-19	88.2
Msa1315960	AT4G17980.1	40.196	102	50	1	199	289	61	162	9.56e-19	85.5

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

Find 102 sgRNAs with CRISPR-Local

Find 691 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTCAAATCAAGACCAA+AGG	0.640209	8_4:+15593188	Msa1315960:CDS
AAAGACATGATATTCACTTC+AGG	0.464037	8_4:-15597179	None:intergenic
AAAGGAACCAACAATGTTAT+TGG	0.267087	8_4:+15593206	Msa1315960:CDS
AAATTAATGAGGAAGCGCTT+GGG	0.534615	8_4:+15588646	Msa1315960:CDS
AACACTGTAGGGTTTCCAGT+TGG	0.615012	8_4:+15597308	Msa1315960:CDS
AACAGACAAACCATGATTTA+AGG	0.154302	8_4:-15587120	None:intergenic
AACCTCAAAATCTATCGGTG+CGG	0.666966	8_4:+15586546	Msa1315960:five_prime_UTR
AAGACATGATATTCACTTCA+GGG	0.528711	8_4:-15597178	None:intergenic
AATAACATTGTTGGTTCCTT+TGG	0.265893	8_4:-15593204	None:intergenic
AATCTTTACCTTGTACAGTG+TGG	0.647262	8_4:-15588739	None:intergenic

Showing 1 to 10 of 102 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTGATGTTCAACATCTATGT+CGG	-	chr8_4:15586702-15586721	None:intergenic	30.0%
ATAGATGTTGAACATCAAGA+AGG	+	chr8_4:15586704-15586723	Msa1315960:CDS	30.0%
TCAGCTTCTTCAACTTTAAA+GGG	-	chr8_4:15586916-15586935	None:intergenic	30.0%
AAAATAGTACCTTCTCAGTT+TGG	-	chr8_4:15586955-15586974	None:intergenic	30.0%
AACAGACAAACCATGATTTA+AGG	-	chr8_4:15587123-15587142	None:intergenic	30.0%
TTCTATCATACACCTTATGT+CGG	-	chr8_4:15587245-15587264	None:intergenic	30.0%
ACAAATGTCATCTGGTATAA+AGG	+	chr8_4:15587618-15587637	Msa1315960:CDS	30.0%
GATGTGAACTTCTTGATTTA+TGG	+	chr8_4:15588303-15588322	Msa1315960:intron	30.0%
AGTACTAAACAAGAATGTTC+TGG	+	chr8_4:15589032-15589051	Msa1315960:intron	30.0%
AAATCTTACAAGTTGTAGGA+CGG	-	chr8_4:15589105-15589124	None:intergenic	30.0%

Showing 1 to 10 of 691 entries

Previous1 2 3 4 5…70Next

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	15586538	15597710	15586538	ID=Msa1315960;Name=Msa1315960
chr8_4	mRNA	15586538	15597710	15586538	ID=Msa1315960-mRNA-1;Parent=Msa1315960;Name=Msa1315960-mRNA-1;_AED=0.33;_eAED=0.33;_QI=97\|0.44\|0.6\|1\|0.44\|0.7\|10\|304\|390
chr8_4	exon	15586538	15586760	15586538	ID=Msa1315960-mRNA-1:exon:6016;Parent=Msa1315960-mRNA-1
chr8_4	exon	15587068	15587131	15587068	ID=Msa1315960-mRNA-1:exon:6017;Parent=Msa1315960-mRNA-1
chr8_4	exon	15587584	15587639	15587584	ID=Msa1315960-mRNA-1:exon:6018;Parent=Msa1315960-mRNA-1
chr8_4	exon	15587804	15587899	15587804	ID=Msa1315960-mRNA-1:exon:6019;Parent=Msa1315960-mRNA-1
chr8_4	exon	15588054	15588124	15588054	ID=Msa1315960-mRNA-1:exon:6020;Parent=Msa1315960-mRNA-1
chr8_4	exon	15588644	15588752	15588644	ID=Msa1315960-mRNA-1:exon:6021;Parent=Msa1315960-mRNA-1
chr8_4	exon	15589168	15589227	15589168	ID=Msa1315960-mRNA-1:exon:6022;Parent=Msa1315960-mRNA-1
chr8_4	exon	15593074	15593319	15593074	ID=Msa1315960-mRNA-1:exon:6023;Parent=Msa1315960-mRNA-1
chr8_4	exon	15596010	15596114	15596010	ID=Msa1315960-mRNA-1:exon:6024;Parent=Msa1315960-mRNA-1
chr8_4	exon	15597167	15597710	15597167	ID=Msa1315960-mRNA-1:exon:6025;Parent=Msa1315960-mRNA-1
chr8_4	five_prime_UTR	15586538	15586634	15586538	ID=Msa1315960-mRNA-1:five_prime_utr;Parent=Msa1315960-mRNA-1
chr8_4	CDS	15586635	15586760	15586635	ID=Msa1315960-mRNA-1:cds;Parent=Msa1315960-mRNA-1
chr8_4	CDS	15587068	15587131	15587068	ID=Msa1315960-mRNA-1:cds;Parent=Msa1315960-mRNA-1
chr8_4	CDS	15587584	15587639	15587584	ID=Msa1315960-mRNA-1:cds;Parent=Msa1315960-mRNA-1
chr8_4	CDS	15587804	15587899	15587804	ID=Msa1315960-mRNA-1:cds;Parent=Msa1315960-mRNA-1
chr8_4	CDS	15588054	15588124	15588054	ID=Msa1315960-mRNA-1:cds;Parent=Msa1315960-mRNA-1
chr8_4	CDS	15588644	15588752	15588644	ID=Msa1315960-mRNA-1:cds;Parent=Msa1315960-mRNA-1
chr8_4	CDS	15589168	15589227	15589168	ID=Msa1315960-mRNA-1:cds;Parent=Msa1315960-mRNA-1
chr8_4	CDS	15593074	15593319	15593074	ID=Msa1315960-mRNA-1:cds;Parent=Msa1315960-mRNA-1
chr8_4	CDS	15596010	15596114	15596010	ID=Msa1315960-mRNA-1:cds;Parent=Msa1315960-mRNA-1
chr8_4	CDS	15597167	15597406	15597167	ID=Msa1315960-mRNA-1:cds;Parent=Msa1315960-mRNA-1
chr8_4	three_prime_UTR	15597407	15597710	15597407	ID=Msa1315960-mRNA-1:three_prime_utr;Parent=Msa1315960-mRNA-1

Gene Sequence

>Msa1315960

ATGGAGCAGGAAGAGCTCGAAGTTTATGGTGCTGACATTCCCGATGAAGAGGTTGACATGGATGCCGACATAGATGTTGAACATCAAGAAGGCGATGAAGAACTCGCATCCAATCACACCACCAAGTTGCTTGTGCTGGGAGGCAATGGATTTGTTGGATCACATGTTTGTAGAGAAGCCTTAAATCATGGTCTGGCAAGTCATCCCTGCACGACTCCTGGGCTACAAATGTCATCTGGTATAAAGGAATTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGTGCCCTTCGTGAAATGCAAGCTAAGGTTGAGAAAGAGATGGGCGCTATTCTGCCGGGTCTTCTGTGTCTCAAGCTGAAAAGGATGAAGTGGATGCTCGATCGATCTATGTCTGTAATGGAAATTAATGAGGAAGCGCTTGGGAAAGCTTTATCTGCTGCCGTTACGCGCACAATATTGGCAGGTGCAGGGCCTCAACGTTCTCGTGTTCTTGCCACACTGTACAAGGCTGAGAAGATAGCATCAAGAATGATTTATGAGGATAGGATGAAGGGATCTATCAATCAGGTAAACTCGGATGACTCGGAATGGTTTTTCTTCACTTCCCTTGGTTTGAAGTTCAAAAAAGGCATAAAGTGTAAAAGAAAAAACCAGTTTGGTTATTGGAAGATCACGGGTAAAAAACGTCAAATCAAGACCAAAGGAACCAACAATGTTATTGGAACAAAAAAGATTCTAGTGTTCTATGCAAGTCGCGGTACTCATCATGAAAAGACCAACTGGGTTGTCCACGAGTATCATGCAATTAACAAGGGAAATTTTGTATTGTGTAGGTTAATGAAGAAAGATGAGAAGAAAAATGAAGGTGTAACTTATGCATCGATATATGATGAAGAGGAAACTCATTCAAGTAATCATGTATGTGGTTCCCCTGAAGTGAATATCATGTCTTTGTTTCAAGCATCACCGCGGAAAGAGGAATATAGCCTCCTTGCCACTGATCAGACACCGTATTTCCATGGTATAAAATCTTCATATGCCTATGCTGAGAACGAAAACAACACTGTAGGGTTTCCAGTTGGAACTTCTGAAGAGGACAGTGCTGATTATGATTGGATTCAAACTCCACCTGGTTTTAGTTATGATTCCACTGCATGA

Protein sequence

>Msa1315960

MEQEELEVYGADIPDEEVDMDADIDVEHQEGDEELASNHTTKLLVLGGNGFVGSHVCREALNHGLASHPCTTPGLQMSSGIKELEDMKKRLKEIEEEASALREMQAKVEKEMGAILPGLLCLKLKRMKWMLDRSMSVMEINEEALGKALSAAVTRTILAGAGPQRSRVLATLYKAEKIASRMIYEDRMKGSINQVNSDDSEWFFFTSLGLKFKKGIKCKRKNQFGYWKITGKKRQIKTKGTNNVIGTKKILVFYASRGTHHEKTNWVVHEYHAINKGNFVLCRLMKKDEKKNEGVTYASIYDEEETHSSNHVCGSPEVNIMSLFQASPRKEEYSLLATDQTPYFHGIKSSYAYAENENNTVGFPVGTSEEDSADYDWIQTPPGFSYDSTA*