AlfalfaGEDB | Msa1316600

M. sativa cultivar zhongmu-4 / Msa1316600

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316600	XP_003603053.1	93.333	240	13	3	8	246	26	263	7.81e-153	439

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316600	sp\|Q9SND4\|HEC2_ARATH	58.788	165	42	4	90	235	35	192	6.60e-44	153

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316600	G7J6E7	93.333	240	13	3	8	246	26	263	3.73e-153	439

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TFs/TRs:

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Gene ID	Type	Classification
Msa1316600	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316600	MtrunA17_Chr3g0134001	93.333	240	13	3	8	246	26	263	7.18e-157	439
Msa1316600	MtrunA17_Chr8g0375121	56.650	203	57	7	28	227	28	202	1.85e-50	168
Msa1316600	MtrunA17_Chr5g0402161	61.677	167	55	4	73	238	56	214	1.10e-47	160
Msa1316600	MtrunA17_Chr8g0384141	76.923	91	21	0	128	218	87	177	5.58e-46	157
Msa1316600	MtrunA17_Chr2g0330641	63.441	93	33	1	127	218	261	353	1.06e-26	108
Msa1316600	MtrunA17_Chr8g0341421	55.769	104	42	1	127	226	296	399	2.23e-26	108
Msa1316600	MtrunA17_Chr7g0243041	70.370	54	16	0	161	214	32	85	1.71e-21	89.4
Msa1316600	MtrunA17_Chr5g0435021	64.286	56	20	0	162	217	225	280	1.48e-18	84.7
Msa1316600	MtrunA17_Chr1g0207311	45.679	81	44	0	164	244	205	285	1.62e-17	81.3
Msa1316600	MtrunA17_Chr1g0152651	62.963	54	20	0	164	217	283	336	2.15e-17	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316600	AT3G50330.1	58.788	165	42	4	90	235	35	192	6.71e-45	153
Msa1316600	AT5G67060.2	87.234	94	12	0	128	221	83	176	7.52e-45	153
Msa1316600	AT5G67060.1	87.234	94	12	0	128	221	95	188	8.42e-45	153
Msa1316600	AT4G00120.1	69.663	89	27	0	130	218	87	175	1.71e-36	130
Msa1316600	AT3G21330.1	56.303	119	43	2	127	242	241	353	4.61e-36	134
Msa1316600	AT5G09750.1	75.556	90	22	0	128	217	92	181	1.87e-33	123
Msa1316600	AT5G01305.1	69.492	59	18	0	156	214	38	96	4.62e-21	89.0
Msa1316600	AT5G43175.1	50.725	69	34	0	149	217	126	194	3.35e-18	82.4
Msa1316600	AT4G33880.1	64.815	54	19	0	164	217	275	328	5.61e-18	84.0
Msa1316600	AT5G37800.1	53.333	75	28	1	150	217	189	263	1.43e-17	82.0

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Find 76 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACAGTTGATGGTTC+AGG	0.375534	8_4:-17460767	Msa1316600:CDS
AAACTCGATGGCGGCGTTGA+GGG	0.444275	8_4:-17461071	Msa1316600:CDS
AAATCATCTTCAGGCTGTGG+TGG	0.544780	8_4:+17456395	None:intergenic
AACAAATCATCTTCAGGCTG+TGG	0.550571	8_4:+17456392	None:intergenic
AACAACAATAATAACAATGG+TGG	0.626935	8_4:-17456434	Msa1316600:CDS
AACAATAATAACAATGGTGG+TGG	0.521587	8_4:-17456431	Msa1316600:CDS
AACAATGGTGGTGGTGTTTA+TGG	0.230158	8_4:-17456422	Msa1316600:CDS
AACAGTAAAAGGACAGTTGA+TGG	0.491037	8_4:-17460773	Msa1316600:CDS
AAGGCTTAGGCAATGAAACA+GGG	0.655130	8_4:+17460735	None:intergenic
AAGGTGGTGTTCGATTACAA+GGG	0.753458	8_4:+17456483	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTTAGATGAAGAAAATTCA+GGG	+	chr8_4:17456366-17456385	None:intergenic	30.0%
CTCGAATTCGAAAACATTAA+CGG	+	chr8_4:17456634-17456653	None:intergenic	30.0%
AATTACACTACAAAAGAGGA+AGG	+	chr8_4:17457386-17457405	None:intergenic	30.0%
TAACTGATTAAACTTTGCAG+GGG	+	chr8_4:17458076-17458095	None:intergenic	30.0%
AAGGAAAAAAAATAAGCCAG+GGG	+	chr8_4:17457777-17457796	None:intergenic	30.0%
TAACTGATTAAACTTTGCAG+GGG	-	chr8_4:17458076-17458095	Msa1316600:intron	30.0%
GTTTCACTGATCAATAAAAC+TGG	+	chr8_4:17459062-17459081	None:intergenic	30.0%
GGTTATCCACGTAATATTTA+TGG	+	chr8_4:17459500-17459519	None:intergenic	30.0%
AACAAAAAAAATATCCGACG+TGG	+	chr8_4:17459521-17459540	None:intergenic	30.0%
TGATAAATTACGCATGTGTT+TGG	-	chr8_4:17459540-17459559	Msa1316600:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	17456337	17461467	17456337	ID=Msa1316600;Name=Msa1316600
chr8_4	mRNA	17456337	17461467	17456337	ID=Msa1316600-mRNA-1;Parent=Msa1316600;Name=Msa1316600-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|1\|1\|1\|2\|0\|325
chr8_4	exon	17460729	17461467	17460729	ID=Msa1316600-mRNA-1:exon:6380;Parent=Msa1316600-mRNA-1
chr8_4	exon	17456337	17456575	17456337	ID=Msa1316600-mRNA-1:exon:6379;Parent=Msa1316600-mRNA-1
chr8_4	CDS	17460729	17461467	17460729	ID=Msa1316600-mRNA-1:cds;Parent=Msa1316600-mRNA-1
chr8_4	CDS	17456337	17456575	17456337	ID=Msa1316600-mRNA-1:cds;Parent=Msa1316600-mRNA-1

Gene Sequence

>Msa1316600

ATGATGTTAATGATGATGATGCAACTCCCTGAATTTTCTTCATCTAACGGTAATAACAACACCATCAATCAATTTCAACCGTCAGATCAACAATTCTATGGCACTTCAAATGCTTCTAACAATACACATCCTCTTGTAGATTTAATAGATAACCCTCCTAATCCAATAATACCATGGTCTTCATCTTCATCATTCACTCACTTACCCTCACAATCCATAACAAACACAAACACAATCTCTTTCACCAATAACAACTCTACTGCACCATTAAGGTTCCAACAACAACAAACAACACCGTTAATGTTTTCGAATTCGAGCAATGAGATTCCTCCGAATGCGAACCATTACGGTACTGCATCTCCATCAGAGAAGAGAAACTCGATGGCGGCGTTGAGGGAGATGATATTCAGAATAGCAGCGATGCAACCAATTTACATAGACCCAGAATCAGTAAAACCACCAAAGAGAAGAAACGTGAAGATTTCAAAAGATCCTCAGAGTGTAGCAGCTAGACACAGAAGAGAAAGAATAAGCGAGAAAATAAGAATACTGCAAAGAATGGTACCAGGTGGAACTAAGATGGATACTGCATCAATGTTGGATGAAGCTATTCATTATGTTAAGTTTCTCAAGACACAGCTTAAGTCACTGCAGGAACGTGCTTCAGGAGCCAACAGTAAAAGGACAGTTGATGGTTCAGGATTAGGGTTCCCTGTTTCATTGCCTAAGCCTTACCAAGTTTCAACAGCTCCACCAGCACCACCACAATCTGGATTACCATATCCACCCCCATCTGGTAATAACACTTACCCTTGTAATCGAACACCACCTTATGGCAGCGGCGGCGGTGACGACGGCAACAACAATAATAACAATGGTGGTGGTGTTTATGGTGCTCCACCACAGCCTGAAGATGATTTGTTCCCTCTTGCATATTACACAACACAAATGAAACAGACAATGACATTGATTTTGTAA

Protein sequence

>Msa1316600

MMLMMMMQLPEFSSSNGNNNTINQFQPSDQQFYGTSNASNNTHPLVDLIDNPPNPIIPWSSSSSFTHLPSQSITNTNTISFTNNNSTAPLRFQQQQTTPLMFSNSSNEIPPNANHYGTASPSEKRNSMAALREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKSLQERASGANSKRTVDGSGLGFPVSLPKPYQVSTAPPAPPQSGLPYPPPSGNNTYPCNRTPPYGSGGGDDGNNNNNNGGGVYGAPPQPEDDLFPLAYYTTQMKQTMTLIL*