AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1318610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1318610 MtrunA17_Chr8g0349261 98.653 297 4 0 15 311 1 297 0.0 609
Msa1318610 MtrunA17_Chr7g0247131 68.359 256 74 5 59 310 9 261 8.82e-116 335
Msa1318610 MtrunA17_Chr1g0203411 48.710 310 115 10 15 310 1 280 8.59e-88 265
Msa1318610 MtrunA17_Chr7g0217741 66.667 171 54 3 15 185 1 168 8.41e-78 239
Msa1318610 MtrunA17_Chr6g0453471 61.307 199 61 6 15 209 1 187 2.39e-77 240
Msa1318610 MtrunA17_Chr4g0042671 66.474 173 50 4 15 183 1 169 1.11e-75 237
Msa1318610 MtrunA17_Chr4g0039971 76.923 130 28 2 15 144 2 129 4.04e-70 221
Msa1318610 MtrunA17_Chr2g0281071 73.077 130 34 1 15 144 1 129 6.45e-69 218
Msa1318610 MtrunA17_Chr3g0115821 73.077 130 33 2 15 144 1 128 8.83e-68 215
Msa1318610 MtrunA17_Chr4g0048511 71.538 130 36 1 15 144 1 129 6.42e-67 213
Msa1318610 MtrunA17_Chr5g0434571 73.134 134 34 2 15 148 37 168 6.83e-65 208
Msa1318610 MtrunA17_Chr2g0323411 67.832 143 43 3 15 157 1 140 2.96e-64 205
Msa1318610 MtrunA17_Chr4g0057031 73.282 131 33 2 15 145 1 129 5.11e-64 203
Msa1318610 MtrunA17_Chr5g0410961 68.462 130 39 2 15 144 1 128 9.82e-64 204
Msa1318610 MtrunA17_Chr5g0395281 70.769 130 36 2 15 144 1 128 1.04e-63 203
Msa1318610 MtrunA17_Chr3g0110351 70.896 134 37 2 15 148 1 132 4.34e-63 202
Msa1318610 MtrunA17_Chr7g0228891 70.992 131 36 2 15 145 1 129 1.66e-62 199
Msa1318610 MtrunA17_Chr4g0037141 51.323 189 85 3 15 203 1 182 1.20e-61 197
Msa1318610 MtrunA17_Chr3g0121241 65.441 136 45 2 10 145 26 159 1.20e-61 198
Msa1318610 MtrunA17_Chr1g0187761 72.881 118 30 2 15 132 1 116 2.34e-61 196
Msa1318610 MtrunA17_Chr7g0261281 73.729 118 29 2 15 132 1 116 1.16e-60 194
Msa1318610 MtrunA17_Chr1g0193371 68.182 132 40 2 15 146 1 130 3.78e-60 196
Msa1318610 MtrunA17_Chr8g0385321 64.662 133 45 2 15 147 1 131 4.15e-59 192
Msa1318610 MtrunA17_Chr3g0131121 59.603 151 55 3 15 161 1 149 4.76e-59 191
Msa1318610 MtrunA17_Chr1g0167691 70.588 119 33 2 15 133 1 117 1.88e-58 188
Msa1318610 MtrunA17_Chr1g0167661 69.748 119 34 2 15 133 1 117 2.60e-58 187
Msa1318610 MtrunA17_Chr5g0417821 57.792 154 59 2 25 178 5 152 9.26e-58 187
Msa1318610 MtrunA17_Chr1g0193801 66.667 132 42 2 15 146 1 130 2.99e-57 189
Msa1318610 MtrunA17_Chr7g0270891 66.667 132 42 2 15 146 1 130 3.49e-57 188
Msa1318610 MtrunA17_Chr4g0068061 66.116 121 39 2 15 135 1 119 3.60e-57 187
Msa1318610 MtrunA17_Chr7g0274581 63.559 118 41 2 15 132 1 116 1.35e-56 182
Msa1318610 MtrunA17_Chr7g0275911 68.644 118 35 2 15 132 1 116 1.66e-56 183
Msa1318610 MtrunA17_Chr3g0117091 52.062 194 76 4 15 195 1 190 7.02e-56 184
Msa1318610 MtrunA17_Chr2g0309911 63.077 130 46 2 20 149 5 132 1.06e-55 183
Msa1318610 MtrunA17_Chr4g0058631 62.963 135 48 2 15 149 1 133 3.13e-55 183
Msa1318610 MtrunA17_Chr7g0271241 66.667 132 42 2 15 146 1 130 3.32e-55 184
Msa1318610 MtrunA17_Chr1g0211161 64.122 131 46 1 15 145 1 130 3.88e-55 179
Msa1318610 MtrunA17_Chr8g0346561 67.797 118 36 2 15 132 1 116 1.86e-54 179
Msa1318610 MtrunA17_Chr5g0435101 50.296 169 79 3 17 185 2 165 4.18e-54 176
Msa1318610 MtrunA17_Chr6g0452271 59.848 132 51 2 15 146 1 130 4.33e-54 179
Msa1318610 MtrunA17_Chr4g0060721 66.102 118 38 2 15 132 2 117 1.50e-53 178
Msa1318610 MtrunA17_Chr2g0330041 50.909 165 70 3 15 170 1 163 2.04e-53 179
Msa1318610 MtrunA17_Chr7g0217221 46.188 223 87 9 15 224 1 203 3.50e-53 175
Msa1318610 MtrunA17_Chr3g0092401 47.826 207 98 6 15 218 2 201 1.35e-52 175
Msa1318610 MtrunA17_Chr3g0103281 55.152 165 62 6 15 179 1 153 1.89e-52 175
Msa1318610 MtrunA17_Chr7g0254411 63.780 127 42 3 15 139 1 125 2.04e-52 175
Msa1318610 MtrunA17_Chr4g0044421 60.317 126 49 1 17 142 2 126 3.73e-52 170
Msa1318610 MtrunA17_Chr1g0194951 62.308 130 47 2 15 144 1 128 8.42e-52 174
Msa1318610 MtrunA17_Chr4g0022931 63.559 118 42 1 15 132 1 117 1.59e-51 171
Msa1318610 MtrunA17_Chr4g0022901 63.866 119 42 1 15 133 1 118 2.81e-51 170
Msa1318610 MtrunA17_Chr8g0342541 60.800 125 47 2 15 139 1 123 1.10e-50 171
Msa1318610 MtrunA17_Chr8g0342521 60.800 125 47 2 15 139 1 123 5.30e-50 169
Msa1318610 MtrunA17_Chr4g0070611 64.407 118 40 2 15 132 1 116 1.28e-49 167
Msa1318610 MtrunA17_Chr4g0070641 64.407 118 40 2 15 132 1 116 1.45e-49 162
Msa1318610 MtrunA17_Chr4g0022911 60.504 119 46 1 15 133 1 118 4.43e-49 165
Msa1318610 MtrunA17_Chr4g0028311 57.364 129 54 1 15 143 1 128 8.00e-49 165
Msa1318610 MtrunA17_Chr6g0453211 65.487 113 37 2 15 127 1 111 1.27e-48 164
Msa1318610 MtrunA17_Chr2g0311221 66.071 112 36 2 16 127 4 113 1.42e-48 165
Msa1318610 MtrunA17_Chr7g0269831 67.797 118 36 2 15 132 1 116 5.86e-48 164
Msa1318610 MtrunA17_Chr8g0387421 61.864 118 43 2 15 132 1 116 6.09e-48 163
Msa1318610 MtrunA17_Chr1g0151941 57.983 119 49 1 15 133 1 118 8.26e-48 160
Msa1318610 MtrunA17_Chr5g0400821 59.664 119 47 1 15 133 1 118 2.45e-47 161
Msa1318610 MtrunA17_Chr7g0264641 58.678 121 49 1 15 135 1 120 2.47e-47 160
Msa1318610 MtrunA17_Chr3g0135311 59.664 119 47 1 15 133 1 118 3.13e-47 162
Msa1318610 MtrunA17_Chr2g0323351 63.025 119 42 2 15 133 1 117 3.94e-47 159
Msa1318610 MtrunA17_Chr2g0327351 58.156 141 53 3 15 152 1 138 8.08e-47 160
Msa1318610 MtrunA17_Chr8g0342481 60.504 119 46 1 15 133 1 118 9.31e-47 162
Msa1318610 MtrunA17_Chr5g0397231 64.286 112 38 2 15 126 1 110 9.65e-47 160
Msa1318610 MtrunA17_Chr1g0152011 57.983 119 49 1 15 133 1 118 4.42e-46 159
Msa1318610 MtrunA17_Chr6g0487491 55.906 127 47 2 15 133 1 126 1.39e-45 155
Msa1318610 MtrunA17_Chr4g0032401 56.911 123 52 1 27 149 17 138 2.97e-45 156
Msa1318610 MtrunA17_Chr8g0354661 65.714 105 35 1 27 131 37 140 3.03e-45 161
Msa1318610 MtrunA17_Chr3g0088461 61.017 118 45 1 15 132 10 126 1.79e-44 154
Msa1318610 MtrunA17_Chr4g0022891 60.000 115 44 2 15 129 1 113 3.48e-44 151
Msa1318610 MtrunA17_Chr4g0072751 60.714 112 43 1 15 126 1 111 4.04e-44 154
Msa1318610 MtrunA17_Chr2g0328771 62.264 106 39 1 27 132 20 124 4.56e-44 153
Msa1318610 MtrunA17_Chr4g0022881 56.667 120 50 2 15 134 1 118 1.32e-43 149
Msa1318610 MtrunA17_Chr6g0450101 57.983 119 48 2 15 132 1 118 2.17e-43 148
Msa1318610 MtrunA17_Chr7g0228231 63.208 106 38 1 27 132 14 118 2.53e-43 147
Msa1318610 MtrunA17_Chr1g0168661 60.577 104 40 1 28 131 22 124 1.60e-42 147
Msa1318610 MtrunA17_Chr4g0054391 57.658 111 46 1 15 125 1 110 2.36e-42 147
Msa1318610 MtrunA17_Chr1g0186061 54.032 124 52 2 28 151 21 139 2.95e-42 146
Msa1318610 MtrunA17_Chr3g0080861 60.952 105 40 1 27 131 37 140 1.19e-41 150
Msa1318610 MtrunA17_Chr1g0203441 52.713 129 59 2 15 143 1 127 2.10e-41 144
Msa1318610 MtrunA17_Chr4g0042611 70.000 90 25 2 15 104 1 88 2.17e-41 139
Msa1318610 MtrunA17_Chr3g0099131 60.952 105 40 1 27 131 41 144 2.43e-41 150
Msa1318610 MtrunA17_Chr1g0154031 61.905 105 39 1 27 131 76 179 5.30e-41 147
Msa1318610 MtrunA17_Chr1g0209661 56.250 112 48 1 27 138 27 137 9.93e-41 144
Msa1318610 MtrunA17_Chr1g0180391 60.377 106 41 1 27 132 19 123 1.27e-40 141
Msa1318610 MtrunA17_Chr2g0294811 67.778 90 27 2 15 104 1 88 1.00e-39 135
Msa1318610 MtrunA17_Chr2g0322521 60.360 111 43 1 21 131 23 132 1.08e-39 143
Msa1318610 MtrunA17_Chr1g0194301 47.015 134 70 1 22 155 28 160 9.14e-39 138
Msa1318610 MtrunA17_Chr6g0470971 53.175 126 57 2 24 148 11 135 2.46e-38 137
Msa1318610 MtrunA17_Chr1g0194291 56.364 110 47 1 22 131 16 124 2.49e-38 136
Msa1318610 MtrunA17_Chr4g0055981 54.237 118 53 1 24 141 52 168 4.08e-38 135
Msa1318610 MtrunA17_Chr7g0240821 56.075 107 46 1 32 138 6 111 5.30e-37 132
Msa1318610 MtrunA17_Chr8g0343831 55.660 106 46 1 27 132 8 112 7.11e-37 132
Msa1318610 MtrunA17_Chr2g0327821 56.190 105 45 1 27 131 6 109 1.21e-36 131
Msa1318610 MtrunA17_Chr7g0220341 53.509 114 50 2 22 133 20 132 1.69e-36 132
Msa1318610 MtrunA17_Chr5g0434931 53.704 108 49 1 26 133 34 140 4.34e-36 131
Msa1318610 MtrunA17_Chr5g0434831 54.630 108 48 1 26 133 6 112 1.57e-35 127
Msa1318610 MtrunA17_Chr4g0030881 54.054 111 43 2 28 131 8 117 2.04e-35 129
Msa1318610 MtrunA17_Chr5g0434911 51.852 108 51 1 26 133 20 126 5.93e-35 128
Msa1318610 MtrunA17_Chr2g0293911 56.881 109 46 1 22 130 19 126 2.34e-34 127
Msa1318610 MtrunA17_Chr7g0228991 51.786 112 53 1 22 133 24 134 7.76e-34 125
Msa1318610 MtrunA17_Chr5g0440781 48.673 113 55 3 28 139 13 123 8.91e-34 122
Msa1318610 MtrunA17_Chr4g0068921 55.963 109 47 1 22 130 19 126 1.00e-33 122
Msa1318610 MtrunA17_Chr5g0395221 66.265 83 27 1 22 104 7 88 2.01e-33 118
Msa1318610 MtrunA17_Chr1g0192411 47.200 125 59 2 25 143 10 133 2.50e-33 126
Msa1318610 MtrunA17_Chr8g0360111 53.271 107 49 1 22 128 20 125 3.79e-33 122
Msa1318610 MtrunA17_Chr8g0342511 60.674 89 33 2 15 103 1 87 4.43e-33 117
Msa1318610 MtrunA17_Chr5g0434841 52.778 108 50 1 26 133 19 125 6.57e-33 123
Msa1318610 MtrunA17_Chr5g0441141 48.673 113 55 3 28 139 13 123 7.00e-33 122
Msa1318610 MtrunA17_Chr5g0440761 48.673 113 55 3 28 139 13 123 7.41e-33 122
Msa1318610 MtrunA17_Chr8g0342531 56.250 96 41 1 17 112 2 96 1.67e-32 118
Msa1318610 MtrunA17_Chr2g0323321 58.511 94 36 2 15 108 1 91 4.48e-32 115
Msa1318610 MtrunA17_Chr8g0334881 55.238 105 45 2 27 130 10 113 1.80e-31 119
Msa1318610 MtrunA17_Chr5g0441131 48.673 113 55 3 28 139 10 120 2.37e-31 115
Msa1318610 MtrunA17_Chr8g0342461 56.044 91 39 1 15 105 1 90 7.20e-31 113
Msa1318610 MtrunA17_Chr3g0099141 55.952 84 36 1 27 110 40 122 8.96e-31 113
Msa1318610 MtrunA17_Chr8g0342471 56.044 91 39 1 15 105 1 90 1.09e-30 112
Msa1318610 MtrunA17_Chr4g0008551 51.887 106 47 3 29 133 38 140 1.04e-29 115
Msa1318610 MtrunA17_Chr6g0454921 48.276 116 56 3 24 138 10 122 3.96e-29 110
Msa1318610 MtrunA17_Chr3g0093811 56.818 88 38 0 59 146 13 100 4.20e-29 112
Msa1318610 MtrunA17_Chr3g0133601 46.957 115 57 3 23 136 31 142 4.65e-29 111
Msa1318610 MtrunA17_Chr4g0013361 51.429 105 49 2 27 130 10 113 5.53e-29 112
Msa1318610 MtrunA17_Chr5g0401731 43.382 136 69 4 24 154 10 142 6.04e-28 110
Msa1318610 MtrunA17_Chr5g0437321 50.495 101 46 3 29 128 19 116 5.83e-27 107
Msa1318610 MtrunA17_Chr5g0429661 45.000 120 64 1 7 126 100 217 6.05e-27 108
Msa1318610 MtrunA17_Chr7g0238631 46.377 138 61 4 27 163 111 236 6.85e-27 110
Msa1318610 MtrunA17_Chr4g0053431 50.485 103 49 2 29 131 5 105 4.03e-26 104
Msa1318610 MtrunA17_Chr3g0139671 42.446 139 72 5 27 160 83 218 2.55e-25 106
Msa1318610 MtrunA17_Chr6g0480581 44.800 125 61 4 29 148 4 125 5.04e-25 100
Msa1318610 MtrunA17_Chr4g0058991 49.515 103 50 1 24 126 204 304 6.77e-25 103
Msa1318610 MtrunA17_Chr7g0229101 60.563 71 28 0 59 129 3 73 8.30e-25 99.4
Msa1318610 MtrunA17_Chr6g0453751 51.064 94 38 2 26 111 19 112 8.32e-25 97.1
Msa1318610 MtrunA17_Chr7g0247141 79.592 49 9 1 15 63 1 48 1.46e-24 94.4
Msa1318610 MtrunA17_Chr7g0229131 56.000 75 33 0 59 133 3 77 1.93e-24 97.4
Msa1318610 MtrunA17_Chr1g0157731 47.664 107 52 3 27 132 89 192 3.33e-24 103
Msa1318610 MtrunA17_Chr7g0228531 34.054 185 93 6 25 204 216 376 1.04e-23 100
Msa1318610 MtrunA17_Chr3g0117511 45.045 111 53 4 24 131 178 283 1.13e-23 100
Msa1318610 MtrunA17_Chr4g0042621 58.696 92 25 4 100 183 9 95 1.48e-23 98.6
Msa1318610 MtrunA17_Chr5g0425591 48.235 85 42 2 28 111 10 93 5.37e-23 91.3
Msa1318610 MtrunA17_Chr5g0434901 59.091 66 27 0 64 129 9 74 2.21e-22 90.1
Msa1318610 MtrunA17_Chr6g0460661 43.434 99 52 3 29 126 16 111 1.95e-20 86.3
Msa1318610 MtrunA17_Chr5g0397841 47.000 100 49 3 27 125 108 204 2.41e-20 90.9
Msa1318610 MtrunA17_Chr1g0177901 50.000 78 38 1 49 126 13 89 3.42e-20 87.0
Msa1318610 MtrunA17_Chr3g0125801 47.115 104 51 3 29 131 16 116 4.46e-20 88.2
Msa1318610 MtrunA17_Chr7g0233061 44.000 100 48 2 29 126 180 273 9.80e-20 88.2
Msa1318610 MtrunA17_Chr5g0417621 40.650 123 63 4 11 132 122 235 1.16e-19 89.0
Msa1318610 MtrunA17_Chr7g0228481 31.319 182 102 7 25 204 216 376 1.16e-19 89.0
Msa1318610 MtrunA17_Chr4g0042501 44.231 104 54 3 29 131 105 205 6.24e-19 86.7
Msa1318610 MtrunA17_Chr7g0228401 48.864 88 41 3 40 126 290 374 1.27e-18 86.3
Msa1318610 MtrunA17_Chr7g0238651 39.062 128 74 3 32 156 10 136 2.85e-17 81.3
Msa1318610 MtrunA17_Chr5g0395231 66.667 51 17 0 94 144 5 55 3.24e-17 79.7
Msa1318610 MtrunA17_Chr6g0460671 38.462 104 60 3 29 131 99 199 5.81e-17 80.5
Msa1318610 MtrunA17_Chr5g0416341 41.748 103 52 4 32 131 29 126 6.85e-16 77.8
Msa1318610 MtrunA17_Chr7g0254261 38.655 119 63 4 14 131 80 189 3.47e-15 75.1
Msa1318610 MtrunA17_Chr8g0362231 40.777 103 53 4 32 131 25 122 3.57e-15 75.5
Msa1318610 MtrunA17_Chr1g0193901 49.231 65 31 2 22 85 6 69 4.51e-14 67.4
Msa1318610 MtrunA17_Chr1g0193891 49.231 65 31 2 22 85 6 69 4.51e-14 67.4
Msa1318610 MtrunA17_Chr1g0193871 49.231 65 31 2 22 85 6 69 4.51e-14 67.4
Msa1318610 MtrunA17_Chr1g0193881 49.231 65 31 2 22 85 6 69 4.51e-14 67.4
Msa1318610 MtrunA17_Chr5g0434871 52.273 44 21 0 90 133 2 45 2.59e-13 64.3
Msa1318610 MtrunA17_Chr3g0145551 53.968 63 20 2 108 170 2 55 1.62e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1318610 AT3G61250.1 62.252 302 85 9 15 311 1 278 1.32e-120 348
Msa1318610 AT3G01140.2 65.027 183 56 3 15 191 1 181 3.07e-80 247
Msa1318610 AT5G15310.4 65.318 173 58 2 15 187 1 171 2.08e-79 242
Msa1318610 AT5G15310.1 65.318 173 58 2 15 187 1 171 3.18e-79 244
Msa1318610 AT5G15310.2 65.318 173 58 2 15 187 1 171 3.21e-79 244
Msa1318610 AT3G01140.1 64.444 180 56 3 18 191 47 224 1.10e-76 239
Msa1318610 AT3G02940.2 73.846 130 32 2 15 144 1 128 1.31e-67 214
Msa1318610 AT3G02940.1 73.846 130 32 2 15 144 1 128 3.30e-67 213
Msa1318610 AT3G02940.3 73.846 130 32 2 15 144 1 128 3.30e-67 213
Msa1318610 AT5G10280.1 53.299 197 65 4 15 190 1 191 5.53e-67 213
Msa1318610 AT5G16770.4 73.077 130 33 2 15 144 1 128 1.35e-66 212
Msa1318610 AT5G16770.3 73.077 130 33 2 15 144 1 128 1.35e-66 212
Msa1318610 AT1G34670.1 55.080 187 71 3 15 190 1 185 3.83e-66 212
Msa1318610 AT5G16770.1 73.077 130 33 2 15 144 1 128 4.39e-66 211
Msa1318610 AT5G16770.2 73.077 130 33 2 15 144 1 128 4.39e-66 211
Msa1318610 AT4G05100.1 70.000 130 38 1 15 144 1 129 5.89e-66 210
Msa1318610 AT4G21440.1 40.940 298 143 7 15 291 1 286 1.51e-65 210
Msa1318610 AT4G22680.1 72.519 131 34 2 15 145 1 129 1.57e-65 207
Msa1318610 AT4G12350.1 70.992 131 36 2 15 145 1 129 3.60e-64 204
Msa1318610 AT5G65230.1 70.769 130 36 2 15 144 1 128 1.13e-63 204
Msa1318610 AT4G28110.1 68.462 130 39 2 15 144 1 128 2.19e-63 202
Msa1318610 AT3G13540.1 70.312 128 36 2 18 145 15 140 2.57e-63 201
Msa1318610 AT5G16600.1 71.970 132 35 2 15 146 1 130 3.01e-63 203
Msa1318610 AT4G17785.2 67.692 130 41 1 15 144 1 129 1.18e-62 202
Msa1318610 AT4G17785.1 67.692 130 41 1 15 144 1 129 1.62e-62 202
Msa1318610 AT1G22640.1 47.534 223 106 6 15 232 1 217 4.68e-62 197
Msa1318610 AT3G23250.1 74.576 118 28 2 15 132 1 116 3.04e-61 196
Msa1318610 AT1G06180.1 72.881 118 30 2 15 132 1 116 6.83e-61 194
Msa1318610 AT2G31180.1 72.034 118 31 2 15 132 1 116 1.33e-60 194
Msa1318610 AT2G16720.1 59.864 147 57 2 15 161 1 145 3.30e-60 193
Msa1318610 AT4G09460.1 64.925 134 45 2 15 148 1 132 4.37e-60 192
Msa1318610 AT4G38620.1 66.418 134 43 2 15 148 1 132 5.51e-60 193
Msa1318610 AT1G09540.1 65.693 137 45 2 15 151 1 135 2.56e-59 194
Msa1318610 AT1G18570.1 64.925 134 46 1 15 148 1 133 3.56e-59 193
Msa1318610 AT5G62320.1 57.229 166 53 3 16 164 3 167 4.02e-59 190
Msa1318610 AT5G61420.2 64.925 134 45 2 15 148 1 132 8.69e-59 193
Msa1318610 AT5G14340.1 65.185 135 45 2 11 145 9 141 1.85e-58 189
Msa1318610 AT1G35515.1 63.359 131 46 2 15 145 1 129 3.95e-58 186
Msa1318610 AT1G57560.1 64.394 132 45 2 15 146 1 130 5.26e-58 189
Msa1318610 AT1G57560.2 64.394 132 45 2 15 146 1 130 1.04e-57 187
Msa1318610 AT5G07700.1 62.590 139 50 2 15 153 1 137 3.05e-57 188
Msa1318610 AT5G07700.2 62.590 139 50 2 15 153 1 137 3.05e-57 188
Msa1318610 AT4G34990.1 64.885 131 44 2 15 145 1 129 3.55e-57 186
Msa1318610 AT5G26660.1 64.662 133 45 2 15 147 1 131 4.41e-57 188
Msa1318610 AT5G07690.1 63.636 132 46 2 15 146 1 130 1.38e-56 186
Msa1318610 AT5G60890.1 63.433 134 47 2 15 148 1 132 1.80e-56 184
Msa1318610 AT4G01680.3 66.667 129 41 2 15 143 1 127 3.23e-56 182
Msa1318610 AT5G54230.1 70.339 118 34 1 27 144 12 128 8.68e-56 184
Msa1318610 AT1G08810.1 70.339 118 33 2 15 132 1 116 1.29e-55 182
Msa1318610 AT4G01680.1 66.667 129 41 2 15 143 1 127 2.41e-55 183
Msa1318610 AT1G16490.1 69.231 117 34 2 16 132 4 118 3.83e-55 181
Msa1318610 AT1G79180.1 70.085 117 33 2 16 132 4 118 1.31e-54 180
Msa1318610 AT1G56160.1 69.231 117 34 2 16 132 4 118 2.50e-54 179
Msa1318610 AT1G74650.1 67.769 121 37 2 15 135 1 119 4.69e-54 179
Msa1318610 AT5G49330.1 56.757 148 61 3 15 161 1 146 4.91e-54 180
Msa1318610 AT2G47460.1 68.644 118 35 2 15 132 1 116 1.61e-53 179
Msa1318610 AT3G47600.1 67.769 121 37 2 15 135 1 119 1.73e-53 178
Msa1318610 AT1G74430.1 64.179 134 46 2 15 148 1 132 1.96e-53 176
Msa1318610 AT1G74080.1 61.832 131 48 2 15 145 1 129 2.10e-53 178
Msa1318610 AT5G56110.1 59.848 132 51 2 15 146 1 130 5.23e-53 176
Msa1318610 AT5G62470.2 67.797 118 36 2 15 132 1 116 1.15e-52 176
Msa1318610 AT3G62610.1 67.797 118 36 2 15 132 1 116 1.65e-52 176
Msa1318610 AT3G12820.1 69.231 117 34 2 17 133 5 119 2.00e-52 172
Msa1318610 AT3G28910.1 67.797 118 36 2 15 132 1 116 4.18e-52 174
Msa1318610 AT4G01680.2 60.993 141 41 3 15 143 1 139 7.04e-52 174
Msa1318610 AT1G18710.1 63.359 131 46 2 15 145 1 129 1.63e-51 171
Msa1318610 AT5G62470.1 67.797 118 35 3 15 132 1 115 3.27e-51 172
Msa1318610 AT3G13890.2 63.866 119 41 2 15 133 1 117 1.78e-50 171
Msa1318610 AT4G37780.1 62.185 119 44 1 15 133 1 118 3.30e-50 169
Msa1318610 AT3G12720.1 56.934 137 56 3 11 147 8 141 3.44e-50 169
Msa1318610 AT3G28470.1 52.353 170 67 4 15 172 1 168 5.66e-49 166
Msa1318610 AT2G36890.2 55.396 139 60 2 10 147 37 174 3.38e-48 164
Msa1318610 AT1G63910.1 61.864 118 43 2 15 132 1 116 8.62e-48 164
Msa1318610 AT1G79180.2 54.667 150 33 3 16 132 4 151 1.16e-47 163
Msa1318610 AT3G13890.1 59.375 128 41 3 15 133 1 126 1.86e-47 163
Msa1318610 AT2G36890.1 56.716 134 56 2 15 147 1 133 1.97e-47 161
Msa1318610 AT3G49690.1 60.504 119 46 1 15 133 1 118 2.39e-47 161
Msa1318610 AT5G57620.1 59.664 119 47 1 15 133 1 118 8.93e-47 160
Msa1318610 AT5G65790.1 58.824 119 48 1 15 133 1 118 2.38e-46 160
Msa1318610 AT5G23000.1 58.824 119 48 1 15 133 1 118 2.87e-46 159
Msa1318610 AT2G32460.2 66.038 106 35 1 26 131 5 109 3.31e-46 162
Msa1318610 AT2G32460.1 66.038 106 35 1 26 131 17 121 3.34e-46 163
Msa1318610 AT3G08500.1 63.063 111 40 1 22 132 25 134 1.37e-44 155
Msa1318610 AT5G55020.1 61.207 116 43 2 22 137 21 134 3.59e-44 158
Msa1318610 AT5G40350.1 60.909 110 42 1 27 136 17 125 9.25e-44 149
Msa1318610 AT5G14750.1 41.398 186 88 4 28 211 17 183 1.35e-43 148
Msa1318610 AT5G12870.1 62.385 109 40 1 27 135 18 125 2.51e-43 150
Msa1318610 AT3G27810.1 61.321 106 40 1 27 132 20 124 3.26e-43 148
Msa1318610 AT4G26930.1 63.462 104 37 1 27 130 19 121 8.61e-43 152
Msa1318610 AT3G24310.1 61.321 106 40 1 26 131 17 121 1.54e-42 148
Msa1318610 AT3G01530.1 55.200 125 50 2 13 132 6 129 1.59e-42 145
Msa1318610 AT4G13480.1 62.500 104 38 1 28 131 7 109 3.21e-42 147
Msa1318610 AT1G25340.1 49.296 142 67 3 15 152 4 144 6.51e-42 146
Msa1318610 AT5G06100.1 57.547 106 44 1 26 131 31 135 9.90e-42 150
Msa1318610 AT3G11440.2 58.095 105 43 1 27 131 41 144 2.34e-41 149
Msa1318610 AT5G40330.1 58.095 105 43 1 28 132 13 116 2.74e-41 143
Msa1318610 AT5G06100.5 57.547 106 44 1 26 131 31 135 3.39e-41 150
Msa1318610 AT5G06100.2 57.547 106 44 1 26 131 31 135 3.39e-41 150
Msa1318610 AT5G06100.3 57.547 106 44 1 26 131 31 135 3.39e-41 150
Msa1318610 AT5G06100.4 57.547 106 44 1 26 131 31 135 3.39e-41 150
Msa1318610 AT3G11440.3 58.095 105 43 1 27 131 41 144 8.88e-41 149
Msa1318610 AT3G11440.4 58.095 105 43 1 27 131 41 144 8.88e-41 149
Msa1318610 AT3G11440.1 58.095 105 43 1 27 131 41 144 8.88e-41 149
Msa1318610 AT3G27920.1 56.604 106 45 1 28 133 15 119 1.25e-40 142
Msa1318610 AT5G35550.1 56.098 123 49 2 27 149 14 131 1.47e-40 142
Msa1318610 AT3G30210.1 58.095 105 43 1 26 130 26 129 1.77e-40 142
Msa1318610 AT2G26960.1 58.772 114 45 2 24 137 17 128 5.71e-40 145
Msa1318610 AT1G68320.1 56.250 112 48 1 27 138 19 129 1.29e-39 140
Msa1318610 AT3G46130.1 59.434 106 42 1 26 131 8 112 2.38e-39 139
Msa1318610 AT5G59780.3 59.615 104 41 1 28 131 9 111 5.89e-39 137
Msa1318610 AT5G26660.2 68.966 87 27 0 61 147 14 100 6.40e-39 140
Msa1318610 AT5G52600.1 47.059 136 62 2 22 148 7 141 1.65e-38 135
Msa1318610 AT3G53200.1 58.095 105 43 1 27 131 9 112 1.43e-37 134
Msa1318610 AT1G25340.2 47.183 142 65 4 15 152 4 139 1.59e-37 135
Msa1318610 AT2G47190.1 50.000 120 59 1 12 131 5 123 1.76e-37 135
Msa1318610 AT1G25340.3 47.183 142 65 4 15 152 4 139 2.49e-37 135
Msa1318610 AT1G48000.1 43.333 150 84 1 27 176 32 180 2.26e-36 131
Msa1318610 AT1G66370.1 55.556 117 46 2 15 131 1 111 3.21e-36 130
Msa1318610 AT5G52260.1 55.000 120 49 2 14 133 3 117 1.88e-35 129
Msa1318610 AT3G06490.1 54.098 122 55 1 22 143 14 134 1.89e-35 130
Msa1318610 AT3G48920.1 50.000 126 56 3 28 153 19 137 3.92e-35 128
Msa1318610 AT4G25560.1 55.660 106 46 1 28 133 11 115 7.72e-35 128
Msa1318610 AT5G49620.1 53.390 118 54 1 13 130 12 128 6.53e-33 124
Msa1318610 AT1G66380.1 52.846 123 47 2 26 148 7 118 2.80e-32 117
Msa1318610 AT5G14750.3 39.264 163 74 4 56 211 5 149 3.17e-32 118
Msa1318610 AT3G47600.2 75.000 72 18 0 61 132 39 110 3.26e-32 122
Msa1318610 AT3G12820.2 71.831 71 20 0 63 133 1 71 5.38e-32 118
Msa1318610 AT1G22640.3 41.718 163 86 4 75 232 2 160 6.49e-32 118
Msa1318610 AT1G56650.1 58.491 106 43 1 26 131 7 111 1.68e-31 118
Msa1318610 AT2G26950.1 48.246 114 57 2 24 137 13 124 6.12e-31 120
Msa1318610 AT5G35550.2 59.574 94 34 1 56 149 45 134 1.21e-30 116
Msa1318610 AT3G60460.1 51.852 108 50 2 24 130 8 114 1.79e-30 117
Msa1318610 AT1G66390.1 57.547 106 44 1 26 131 7 111 5.32e-30 114
Msa1318610 AT3G46130.3 66.667 72 24 0 60 131 9 80 9.16e-30 113
Msa1318610 AT5G40350.2 63.158 76 28 0 61 136 5 80 9.86e-30 111
Msa1318610 AT3G27810.2 63.889 72 26 0 61 132 4 75 1.63e-29 111
Msa1318610 AT5G59780.2 67.606 71 23 0 61 131 20 90 1.83e-29 112
Msa1318610 AT3G46130.4 67.606 71 23 0 61 131 20 90 1.92e-29 112
Msa1318610 AT3G53200.2 64.789 71 25 0 61 131 9 79 2.08e-29 111
Msa1318610 AT5G49620.2 47.727 132 54 2 13 130 12 142 2.17e-29 114
Msa1318610 AT1G18960.1 47.107 121 54 3 29 146 10 123 9.45e-28 110
Msa1318610 AT3G09230.1 51.376 109 43 3 29 133 55 157 1.35e-27 111
Msa1318610 AT3G55730.1 50.467 107 43 3 29 131 56 156 7.88e-27 108
Msa1318610 AT5G15310.3 57.143 84 36 0 104 187 9 92 2.41e-26 104
Msa1318610 AT3G23250.2 75.862 58 14 0 75 132 2 59 5.91e-26 103
Msa1318610 AT2G39880.1 48.598 107 45 3 29 131 50 150 6.09e-26 106
Msa1318610 AT1G71030.2 50.588 85 42 0 67 151 5 89 7.24e-26 101
Msa1318610 AT1G71030.1 50.588 85 42 0 67 151 19 103 1.20e-25 101
Msa1318610 AT5G02320.3 51.402 107 48 3 27 132 65 168 1.80e-25 106
Msa1318610 AT5G02320.1 51.402 107 48 3 27 132 125 228 1.91e-25 106
Msa1318610 AT5G02320.2 51.402 107 48 3 27 132 125 228 1.91e-25 106
Msa1318610 AT3G50060.1 47.706 109 51 4 29 136 6 109 1.93e-25 103
Msa1318610 AT4G18770.1 45.946 111 54 2 24 132 212 318 1.98e-25 105
Msa1318610 AT5G11510.3 50.467 107 49 3 27 132 79 182 2.39e-25 106
Msa1318610 AT5G11510.1 50.467 107 49 3 27 132 79 182 2.39e-25 106
Msa1318610 AT5G11510.4 50.467 107 49 3 27 132 79 182 2.39e-25 106
Msa1318610 AT5G11510.2 50.467 107 49 3 27 132 79 182 2.56e-25 106
Msa1318610 AT5G11510.5 50.467 107 49 3 27 132 79 182 2.80e-25 106
Msa1318610 AT5G67300.1 43.182 132 67 5 29 159 6 130 3.62e-25 102
Msa1318610 AT5G40360.1 46.226 106 54 3 27 132 156 258 1.14e-24 102
Msa1318610 AT3G27785.1 50.485 103 47 3 24 125 184 283 2.99e-24 102
Msa1318610 AT3G09370.2 50.459 109 44 3 27 131 133 235 3.37e-24 102
Msa1318610 AT3G09370.1 50.459 109 44 3 27 131 128 230 3.67e-24 102
Msa1318610 AT3G09370.3 50.459 109 44 3 27 131 141 243 4.27e-24 102
Msa1318610 AT2G23290.1 49.038 104 49 3 29 131 13 113 4.85e-24 100
Msa1318610 AT4G37260.1 45.872 109 55 3 29 136 13 118 1.08e-23 99.4
Msa1318610 AT5G58850.1 47.000 100 51 1 27 126 103 200 1.26e-23 100
Msa1318610 AT1G17950.1 47.222 108 53 3 25 131 1 105 1.52e-23 97.4
Msa1318610 AT4G32730.1 45.794 107 54 3 27 132 85 188 5.29e-23 99.8
Msa1318610 AT4G32730.5 45.794 107 54 3 27 132 85 188 5.40e-23 100
Msa1318610 AT4G32730.4 45.794 107 54 3 27 132 85 188 5.40e-23 100
Msa1318610 AT4G32730.3 45.794 107 54 3 27 132 85 188 5.40e-23 100
Msa1318610 AT4G32730.2 45.794 107 54 3 27 132 85 188 5.40e-23 100
Msa1318610 AT5G14750.4 36.691 139 68 3 75 211 2 122 2.19e-22 91.3
Msa1318610 AT5G14750.2 36.691 139 68 3 75 211 2 122 2.19e-22 91.3
Msa1318610 AT1G66380.3 52.128 94 35 1 55 148 2 85 2.81e-22 90.1
Msa1318610 AT5G11050.1 46.465 99 49 3 29 126 105 200 3.93e-22 96.3
Msa1318610 AT4G00540.2 47.706 109 52 3 27 132 101 207 7.59e-22 95.1
Msa1318610 AT1G73410.1 48.077 104 50 3 29 131 6 106 1.39e-21 92.0
Msa1318610 AT4G00540.1 47.706 109 52 3 27 132 99 205 1.51e-21 94.7
Msa1318610 AT1G73410.2 48.077 104 50 3 29 131 6 106 3.65e-21 89.7
Msa1318610 AT4G33450.1 43.243 111 59 3 22 131 12 119 7.66e-21 90.1
Msa1318610 AT1G69560.1 42.202 109 61 1 24 132 102 208 3.15e-20 89.7
Msa1318610 AT1G69560.2 42.202 109 61 1 24 132 118 224 4.29e-20 89.7
Msa1318610 AT2G25230.1 42.727 110 58 4 24 132 21 126 5.12e-20 87.4
Msa1318610 AT1G26780.1 43.810 105 57 1 27 131 96 198 3.68e-19 85.9
Msa1318610 AT1G66380.2 54.118 85 38 1 26 110 7 90 4.78e-19 81.3
Msa1318610 AT1G26780.2 43.810 105 57 1 27 131 96 198 6.12e-19 86.7
Msa1318610 AT5G61420.1 71.154 52 15 0 97 148 2 53 1.80e-18 84.3
Msa1318610 AT3G29020.1 38.095 105 61 3 29 132 65 166 8.91e-17 78.6
Msa1318610 AT3G29020.2 38.095 105 61 3 29 132 67 168 1.95e-16 78.6
Msa1318610 AT5G17800.1 41.748 103 58 2 29 131 93 193 2.45e-16 78.6
Msa1318610 AT5G59780.1 65.217 46 16 0 86 131 1 46 8.25e-16 74.3
Msa1318610 AT2G37630.1 36.220 127 78 2 32 156 7 132 8.79e-16 77.4
Msa1318610 AT1G22640.2 36.567 134 76 4 104 232 16 145 1.01e-15 74.3
Msa1318610 AT3G46130.2 65.217 46 16 0 86 131 1 46 1.10e-15 74.7
Msa1318610 AT5G40430.1 35.537 121 72 4 13 132 38 153 1.49e-15 75.5
Msa1318610 AT2G02820.3 39.000 100 59 1 32 131 33 130 5.32e-15 74.7
Msa1318610 AT4G28110.2 70.732 41 12 0 104 144 4 44 5.63e-15 72.8
Msa1318610 AT1G74650.3 69.767 43 13 0 93 135 1 43 1.15e-14 72.8
Msa1318610 AT2G02820.1 39.000 100 59 2 32 131 33 130 1.48e-14 74.3
Msa1318610 AT1G14350.2 39.000 100 59 1 32 131 28 125 1.93e-14 73.9
Msa1318610 AT1G14350.1 39.000 100 59 1 32 131 28 125 1.93e-14 73.9
Msa1318610 AT2G02820.2 39.000 100 59 1 32 131 33 130 2.20e-14 73.9
Msa1318610 AT3G28910.2 70.000 40 12 0 93 132 1 40 3.46e-13 68.6
Msa1318610 AT1G74430.2 57.895 57 23 1 93 148 7 63 4.60e-13 67.4
Msa1318610 AT4G25560.2 55.319 47 21 0 87 133 3 49 2.94e-12 65.5
Msa1318610 AT1G14350.3 48.333 60 31 0 72 131 23 82 1.13e-11 65.5
Msa1318610 AT1G14350.4 48.333 60 31 0 72 131 23 82 1.13e-11 65.5
Msa1318610 AT5G39700.1 36.538 104 63 3 30 133 57 157 1.56e-11 62.8
Msa1318610 AT5G14340.2 59.524 42 17 0 104 145 10 51 6.42e-11 60.8

Find 54 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAATTTGATTTGGAAAT+TGG 0.089428 8_4:-20735767 None:intergenic
ACCTTGTTGTGATAACAAAA+TGG 0.200976 8_4:+20733643 Msa1318610:CDS
CAATAACAACATTCCTTCTT+TGG 0.206897 8_4:+20735874 Msa1318610:CDS
CTGACTATTTCCTTAAGATA+TGG 0.244127 8_4:+20735915 Msa1318610:CDS
GGCGATAGATGAATTTGATT+TGG 0.298295 8_4:-20735774 None:intergenic
TTCGTTGCGGTAAGAGTTGC+CGG 0.304296 8_4:+20734660 Msa1318610:CDS
CACTGCACTGCAACTCTTGT+TGG 0.308906 8_4:+20736189 Msa1318610:CDS
CCTTGTTGTGATAACAAAAT+GGG 0.328230 8_4:+20733644 Msa1318610:CDS
ATCTCATTGTCAGTTCTTCC+TGG 0.339461 8_4:-20735650 None:intergenic
TAAGAAGCTCATATCATTGT+TGG 0.344662 8_4:-20736221 None:intergenic
CTTCAGAGTTCCATATCTTA+AGG 0.345177 8_4:-20735925 None:intergenic
ATGAATTTGATTTGGAAATT+GGG 0.367952 8_4:-20735766 None:intergenic
AAGGGACCGCGTTTAATATC+AGG 0.376248 8_4:-20734707 None:intergenic
CGCGTTTAATATCAGGTCTT+AGG 0.377987 8_4:-20734700 None:intergenic
TTTGAGAGAGAAAAGAAAAT+GGG 0.383444 8_4:+20733614 Msa1318610:CDS
CACGCGCCACATGGCTCAAT+GGG 0.396446 8_4:+20735796 Msa1318610:CDS
CCACGCGCCACATGGCTCAA+TGG 0.417264 8_4:+20735795 Msa1318610:CDS
CTTCTTGAGACATTGAACTT+TGG 0.418411 8_4:-20736012 None:intergenic
CGTTCTCTTCCTAAGTTAGC+AGG 0.426052 8_4:+20733749 Msa1318610:CDS
AATATCAGGTCTTAGGTAGT+TGG 0.437328 8_4:-20734693 None:intergenic
GTAAGAGTTGCCGGCTAAGA+TGG 0.456858 8_4:+20734669 Msa1318610:CDS
GTGATGAGGCTATTGGTTCA+TGG 0.467436 8_4:-20735736 None:intergenic
TTCATGCTATACTTGGAAAC+AGG 0.467617 8_4:+20734762 Msa1318610:CDS
AACAAAATGGGGTTGAAGAA+AGG 0.484655 8_4:+20733656 Msa1318610:CDS
ATACAGCTTCATGCTATACT+TGG 0.486783 8_4:+20734755 Msa1318610:CDS
AAAATGGTGGTCATGGAAGC+TGG 0.495565 8_4:+20733726 Msa1318610:CDS
AAGATATGGAACTCTGAAGT+TGG 0.497165 8_4:+20735929 Msa1318610:CDS
AACTCTTACCGCAACGAAGA+AGG 0.505550 8_4:-20734655 None:intergenic
GCTATTGGTTCATGGGTTTG+TGG 0.506899 8_4:-20735728 None:intergenic
AAAGAAACGTCTCATATGCA+TGG 0.523969 8_4:+20735697 Msa1318610:CDS
TCAATTGCCTCTCAGCTACC+AGG 0.524112 8_4:+20735632 Msa1318610:CDS
CACTTTCCCATTGAGCCATG+TGG 0.525677 8_4:-20735802 None:intergenic
TGATGAGGCTATTGGTTCAT+GGG 0.527437 8_4:-20735735 None:intergenic
TCATCTTCTTCAGTAGTCCA+TGG 0.528564 8_4:-20733680 None:intergenic
GGTAGTTGGTCCATCTTAGC+CGG 0.536805 8_4:-20734679 None:intergenic
CAAAGTTCAATGTCTCAAGA+AGG 0.548341 8_4:+20736013 Msa1318610:CDS
AACTACAAGTCATTTGATGT+AGG 0.555746 8_4:+20736121 Msa1318610:CDS
TGTAATAACAACAACAAATG+TGG 0.560142 8_4:+20736043 Msa1318610:CDS
TACTACAACAAGCAATGTGA+TGG 0.566980 8_4:+20736081 Msa1318610:CDS
AAGAAACGTCTCATATGCAT+GGG 0.571800 8_4:+20735698 Msa1318610:CDS
CTTTCAGGCCTTCTTCGTTG+CGG 0.574007 8_4:+20734647 Msa1318610:intron
TGGGGTTGAAGAAAGGTCCA+TGG 0.581977 8_4:+20733663 Msa1318610:CDS
AAGTAATGTGATGAGGCTAT+TGG 0.582396 8_4:-20735743 None:intergenic
CAAGACTTGAAGCAGAAGCA+AGG 0.585545 8_4:+20735825 Msa1318610:CDS
AAAGTTCAATGTCTCAAGAA+GGG 0.602530 8_4:+20736014 Msa1318610:CDS
CCATTGAGCCATGTGGCGCG+TGG 0.604740 8_4:-20735795 None:intergenic
AAGCTCATATCATTGTTGGA+AGG 0.616366 8_4:-20736217 None:intergenic
TACAACAAGCAATGTGATGG+AGG 0.620346 8_4:+20736084 Msa1318610:CDS
ACGCGGTCCCTTTACACCTG+AGG 0.638908 8_4:+20734718 Msa1318610:CDS
CTTGTTGTGATAACAAAATG+GGG 0.670831 8_4:+20733645 Msa1318610:CDS
AGTTCTTCCTGGTAGCTGAG+AGG 0.678055 8_4:-20735639 None:intergenic
AATTGGGAAGTAATGTGATG+AGG 0.686160 8_4:-20735750 None:intergenic
CTAAGACCTGATATTAAACG+CGG 0.689576 8_4:+20734701 Msa1318610:CDS
TGGTCGCAAATCAGACGACG+AGG 0.734614 8_4:+20735967 Msa1318610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCTTCATAAATATATA+AGG - chr8_4:20733813-20733832 None:intergenic 10.0%
!!! TTTTTTTTTTATGAAATACT+AGG + chr8_4:20734151-20734170 Msa1318610:intron 10.0%
!! TAGTATAAATATTTCATAAT+AGG + chr8_4:20735233-20735252 Msa1318610:intron 10.0%
!! AGTATAAATATTTCATAATA+GGG + chr8_4:20735234-20735253 Msa1318610:intron 10.0%
!!! GTTAATTTTATCAAGAAAAA+TGG + chr8_4:20733710-20733729 Msa1318610:CDS 15.0%
!! TGAATAAAATTTATGAAAAC+AGG + chr8_4:20733887-20733906 Msa1318610:intron 15.0%
!!! TGTATTTAAGTTATTTTCAT+AGG - chr8_4:20734009-20734028 None:intergenic 15.0%
!!! AACATTTTTGAATAAAGTTT+TGG + chr8_4:20735185-20735204 Msa1318610:intron 15.0%
!! AAATATTTATACTAACATCA+TGG - chr8_4:20735227-20735246 None:intergenic 15.0%
!! TCATTAATAATTTAAGAAAG+TGG - chr8_4:20735442-20735461 None:intergenic 15.0%
!!! AATTTTATCAAGAAAAATGG+TGG + chr8_4:20733713-20733732 Msa1318610:CDS 20.0%
!! TCTTCATAAATATATAAGGA+GGG - chr8_4:20733809-20733828 None:intergenic 20.0%
!! TTCTTCATAAATATATAAGG+AGG - chr8_4:20733810-20733829 None:intergenic 20.0%
!! AAGAAATATAAGTCTATGTT+TGG + chr8_4:20733825-20733844 Msa1318610:intron 20.0%
!!! TTTTTAACCTAACTTTTCAT+TGG + chr8_4:20734094-20734113 Msa1318610:intron 20.0%
!!! AAAAAGTACAAACCAATAAA+GGG - chr8_4:20734220-20734239 None:intergenic 20.0%
!!! TAAAAAGTACAAACCAATAA+AGG - chr8_4:20734221-20734240 None:intergenic 20.0%
!! TTACCTAAGAAGTTATTATT+AGG + chr8_4:20734238-20734257 Msa1318610:intron 20.0%
!! TATCCTAATAATAACTTCTT+AGG - chr8_4:20734244-20734263 None:intergenic 20.0%
!! GGATAATAATATTGTCTTAA+AGG + chr8_4:20734259-20734278 Msa1318610:intron 20.0%
!! TTGTTTGTATTCAATATTCA+TGG + chr8_4:20734314-20734333 Msa1318610:intron 20.0%
!!! TTCATTTTCACATATAAGTT+TGG - chr8_4:20734969-20734988 None:intergenic 20.0%
!! TCTATCATTCAATATCAATA+TGG - chr8_4:20735141-20735160 None:intergenic 20.0%
!! AAATTCTTAAAATATAGCCA+TGG - chr8_4:20735580-20735599 None:intergenic 20.0%
!! ACAATGAGATCAAAAATTTA+TGG + chr8_4:20735663-20735682 Msa1318610:CDS 20.0%
!!! ATGAATTTGATTTGGAAATT+GGG - chr8_4:20735769-20735788 None:intergenic 20.0%
!!! TTTTGAGAGAGAAAAGAAAA+TGG + chr8_4:20733613-20733632 Msa1318610:CDS 25.0%
! TTTGAGAGAGAAAAGAAAAT+GGG + chr8_4:20733614-20733633 Msa1318610:CDS 25.0%
! ATTTATGCCAATGAAAAGTT+AGG - chr8_4:20734104-20734123 None:intergenic 25.0%
!! CTCATATTTAGAACACATAA+TGG - chr8_4:20734529-20734548 None:intergenic 25.0%
!! CATTATGTGTTCTAAATATG+AGG + chr8_4:20734527-20734546 Msa1318610:intron 25.0%
!!! TAAGTTTTTTCGTTTCTTTC+AGG + chr8_4:20734632-20734651 Msa1318610:intron 25.0%
! ACAGAAAAAATCCAAACTAA+TGG + chr8_4:20735078-20735097 Msa1318610:intron 25.0%
! CAGAAAAAATCCAAACTAAT+GGG + chr8_4:20735079-20735098 Msa1318610:intron 25.0%
! GATATTGAATGATAGAAATC+AGG + chr8_4:20735145-20735164 Msa1318610:intron 25.0%
!!! GTTGTTCTGAAAGTATATAA+AGG - chr8_4:20735287-20735306 None:intergenic 25.0%
! AACAAATGTAACAATTTCAC+AGG + chr8_4:20735603-20735622 Msa1318610:intron 25.0%
!!! GATGAATTTGATTTGGAAAT+TGG - chr8_4:20735770-20735789 None:intergenic 25.0%
! TGTAATAACAACAACAAATG+TGG + chr8_4:20736043-20736062 Msa1318610:CDS 25.0%
! ACCTTGTTGTGATAACAAAA+TGG + chr8_4:20733643-20733662 Msa1318610:CDS 30.0%
! CCTTGTTGTGATAACAAAAT+GGG + chr8_4:20733644-20733663 Msa1318610:CDS 30.0%
! CTTGTTGTGATAACAAAATG+GGG + chr8_4:20733645-20733664 Msa1318610:CDS 30.0%
CAAAAACAGCTTATAGCTAA+TGG + chr8_4:20733959-20733978 Msa1318610:intron 30.0%
ATGCACATTTATGATCTGTT+TGG - chr8_4:20734073-20734092 None:intergenic 30.0%
! GCTTGTTAAACAAATGTGTT+TGG + chr8_4:20734180-20734199 Msa1318610:intron 30.0%
!!! GATTTTTTGTGACCCTTTAT+TGG + chr8_4:20734205-20734224 Msa1318610:intron 30.0%
AGAGAAAGTTCCAATCTTTA+TGG + chr8_4:20734285-20734304 Msa1318610:intron 30.0%
ACAAACACAACCATAAAGAT+TGG - chr8_4:20734298-20734317 None:intergenic 30.0%
! TTTTTCCCTTCTCATATTCT+TGG - chr8_4:20734448-20734467 None:intergenic 30.0%
AAGGGAAAAATTGAAGTAGA+AGG + chr8_4:20734458-20734477 Msa1318610:intron 30.0%
AGATAACATACTGCTTGTAA+AGG - chr8_4:20734494-20734513 None:intergenic 30.0%
! GTGTTCTAAATATGAGGTTA+AGG + chr8_4:20734533-20734552 Msa1318610:intron 30.0%
! CTGAATCAAGTAGGTTTTTA+TGG + chr8_4:20734558-20734577 Msa1318610:intron 30.0%
TAGTCAAAAGTAACAGGAAT+AGG - chr8_4:20734876-20734895 None:intergenic 30.0%
!! TTTTGGTAGTCAAAAGTAAC+AGG - chr8_4:20734882-20734901 None:intergenic 30.0%
! AACAGACACTAAATAGGTTT+TGG - chr8_4:20734899-20734918 None:intergenic 30.0%
AAACCTATTTAGTGTCTGTT+TGG + chr8_4:20734899-20734918 Msa1318610:intron 30.0%
AATCCAAACAGACACTAAAT+AGG - chr8_4:20734905-20734924 None:intergenic 30.0%
! TCTAAAACTCAGTAAATGTG+AGG + chr8_4:20734990-20735009 Msa1318610:intron 30.0%
!!! TTGGATTTTTTCTGTTCAAC+TGG - chr8_4:20735073-20735092 None:intergenic 30.0%
ATTGAATGATAGAAATCAGG+TGG + chr8_4:20735148-20735167 Msa1318610:intron 30.0%
AGAAATCAGGTGGATATTTA+TGG + chr8_4:20735158-20735177 Msa1318610:intron 30.0%
TTGACCATTGAAATACCTTT+CGG + chr8_4:20735314-20735333 Msa1318610:intron 30.0%
AAATATAGCCATGGAGAAAA+TGG - chr8_4:20735571-20735590 None:intergenic 30.0%
AAATGTAACAATTTCACAGG+TGG + chr8_4:20735606-20735625 Msa1318610:intron 30.0%
AATGTAACAATTTCACAGGT+GGG + chr8_4:20735607-20735626 Msa1318610:intron 30.0%
CAATAACAACATTCCTTCTT+TGG + chr8_4:20735874-20735893 Msa1318610:CDS 30.0%
CTGACTATTTCCTTAAGATA+TGG + chr8_4:20735915-20735934 Msa1318610:CDS 30.0%
AAAGTTCAATGTCTCAAGAA+GGG + chr8_4:20736014-20736033 Msa1318610:CDS 30.0%
AACTACAAGTCATTTGATGT+AGG + chr8_4:20736121-20736140 Msa1318610:CDS 30.0%
TAAGAAGCTCATATCATTGT+TGG - chr8_4:20736224-20736243 None:intergenic 30.0%
!! CCCATTTTGTTATCACAACA+AGG - chr8_4:20733647-20733666 None:intergenic 35.0%
AACAAAATGGGGTTGAAGAA+AGG + chr8_4:20733656-20733675 Msa1318610:CDS 35.0%
ATCAAGAAAAATGGTGGTCA+TGG + chr8_4:20733719-20733738 Msa1318610:CDS 35.0%
CTTCAAAAACCTGCTAACTT+AGG - chr8_4:20733761-20733780 None:intergenic 35.0%
ACAAAGCCAAGAATATGAGA+AGG + chr8_4:20734439-20734458 Msa1318610:intron 35.0%
CAAAGCCAAGAATATGAGAA+GGG + chr8_4:20734440-20734459 Msa1318610:intron 35.0%
!! GTTAAGGTTCTGAATCAAGT+AGG + chr8_4:20734549-20734568 Msa1318610:intron 35.0%
AATATCAGGTCTTAGGTAGT+TGG - chr8_4:20734696-20734715 None:intergenic 35.0%
CTAAGACCTGATATTAAACG+CGG + chr8_4:20734701-20734720 Msa1318610:CDS 35.0%
! TTTTCTTCCTCAGGTGTAAA+GGG - chr8_4:20734728-20734747 None:intergenic 35.0%
! TTTTTCTTCCTCAGGTGTAA+AGG - chr8_4:20734729-20734748 None:intergenic 35.0%
!!! ATGACTAGTTTTTCTTCCTC+AGG - chr8_4:20734737-20734756 None:intergenic 35.0%
ATACAGCTTCATGCTATACT+TGG + chr8_4:20734755-20734774 Msa1318610:CDS 35.0%
TTCATGCTATACTTGGAAAC+AGG + chr8_4:20734762-20734781 Msa1318610:CDS 35.0%
CTGCTGAAACAAAGTCTAAA+GGG - chr8_4:20734802-20734821 None:intergenic 35.0%
TCTGCTGAAACAAAGTCTAA+AGG - chr8_4:20734803-20734822 None:intergenic 35.0%
TTAGTGTCTGTTTGGATTGA+TGG + chr8_4:20734907-20734926 Msa1318610:intron 35.0%
!!! GATTTTTTCTGTTCAACTGG+AGG - chr8_4:20735070-20735089 None:intergenic 35.0%
TATTTCAAATGAGCCTAAGC+AGG - chr8_4:20735112-20735131 None:intergenic 35.0%
! TTTCATGACCATTTTCTCCA+TGG + chr8_4:20735560-20735579 Msa1318610:intron 35.0%
AAAGAAACGTCTCATATGCA+TGG + chr8_4:20735697-20735716 Msa1318610:CDS 35.0%
AAGAAACGTCTCATATGCAT+GGG + chr8_4:20735698-20735717 Msa1318610:CDS 35.0%
AAGTAATGTGATGAGGCTAT+TGG - chr8_4:20735746-20735765 None:intergenic 35.0%
AATTGGGAAGTAATGTGATG+AGG - chr8_4:20735753-20735772 None:intergenic 35.0%
GGCGATAGATGAATTTGATT+TGG - chr8_4:20735777-20735796 None:intergenic 35.0%
CTTCAGAGTTCCATATCTTA+AGG - chr8_4:20735928-20735947 None:intergenic 35.0%
!! AAGATATGGAACTCTGAAGT+TGG + chr8_4:20735929-20735948 Msa1318610:CDS 35.0%
CTTCTTGAGACATTGAACTT+TGG - chr8_4:20736015-20736034 None:intergenic 35.0%
CAAAGTTCAATGTCTCAAGA+AGG + chr8_4:20736013-20736032 Msa1318610:CDS 35.0%
TACTACAACAAGCAATGTGA+TGG + chr8_4:20736081-20736100 Msa1318610:CDS 35.0%
!! ATGTGATGGAGGATTTTGAA+TGG + chr8_4:20736095-20736114 Msa1318610:CDS 35.0%
AAGCTCATATCATTGTTGGA+AGG - chr8_4:20736220-20736239 None:intergenic 35.0%
TCATCTTCTTCAGTAGTCCA+TGG - chr8_4:20733683-20733702 None:intergenic 40.0%
CGCGTTTAATATCAGGTCTT+AGG - chr8_4:20734703-20734722 None:intergenic 40.0%
TGAGTTAAGCGAAATCACGT+TGG + chr8_4:20734930-20734949 Msa1318610:intron 40.0%
! CTCAGTAAATGTGAGGTGTT+TGG + chr8_4:20734997-20735016 Msa1318610:intron 40.0%
TTCTGTTCAACTGGAGGAAT+AGG - chr8_4:20735064-20735083 None:intergenic 40.0%
AGGCACAATTCCCATTAGTT+TGG - chr8_4:20735092-20735111 None:intergenic 40.0%
GAACATGGTTCATCTACTGA+GGG - chr8_4:20735341-20735360 None:intergenic 40.0%
ATCTCATTGTCAGTTCTTCC+TGG - chr8_4:20735653-20735672 None:intergenic 40.0%
!! TGATGAGGCTATTGGTTCAT+GGG - chr8_4:20735738-20735757 None:intergenic 40.0%
!! GTTTTGTTGCTTGCCAAAGA+AGG - chr8_4:20735890-20735909 None:intergenic 40.0%
TACAACAAGCAATGTGATGG+AGG + chr8_4:20736084-20736103 Msa1318610:CDS 40.0%
AAAATGGTGGTCATGGAAGC+TGG + chr8_4:20733726-20733745 Msa1318610:CDS 45.0%
CGTTCTCTTCCTAAGTTAGC+AGG + chr8_4:20733749-20733768 Msa1318610:CDS 45.0%
AACTCTTACCGCAACGAAGA+AGG - chr8_4:20734658-20734677 None:intergenic 45.0%
AAGGGACCGCGTTTAATATC+AGG - chr8_4:20734710-20734729 None:intergenic 45.0%
AATGGGAATTGTGCCTGCTT+AGG + chr8_4:20735096-20735115 Msa1318610:intron 45.0%
CATAATAGGGCTGTCACATG+TGG + chr8_4:20735247-20735266 Msa1318610:intron 45.0%
!! GGGTCCGAAAGGTATTTCAA+TGG - chr8_4:20735321-20735340 None:intergenic 45.0%
CGAACATGGTTCATCTACTG+AGG - chr8_4:20735342-20735361 None:intergenic 45.0%
CACTGAACACGAATCGAACA+TGG - chr8_4:20735356-20735375 None:intergenic 45.0%
!! CACGTGTGTTAGTGTCGTTT+CGG - chr8_4:20735403-20735422 None:intergenic 45.0%
!! GCTATTGGTTCATGGGTTTG+TGG - chr8_4:20735731-20735750 None:intergenic 45.0%
!! GTGATGAGGCTATTGGTTCA+TGG - chr8_4:20735739-20735758 None:intergenic 45.0%
CAAGACTTGAAGCAGAAGCA+AGG + chr8_4:20735825-20735844 Msa1318610:CDS 45.0%
! GTTGGACAATCTTTTCGCAC+TGG + chr8_4:20735947-20735966 Msa1318610:CDS 45.0%
TGGGGTTGAAGAAAGGTCCA+TGG + chr8_4:20733663-20733682 Msa1318610:CDS 50.0%
CTTTCAGGCCTTCTTCGTTG+CGG + chr8_4:20734647-20734666 Msa1318610:intron 50.0%
TTCGTTGCGGTAAGAGTTGC+CGG + chr8_4:20734660-20734679 Msa1318610:CDS 50.0%
! GTAAGAGTTGCCGGCTAAGA+TGG + chr8_4:20734669-20734688 Msa1318610:CDS 50.0%
GGTAGTTGGTCCATCTTAGC+CGG - chr8_4:20734682-20734701 None:intergenic 50.0%
!! GTGCACTTTAGAGTGCTGAG+TGG + chr8_4:20734849-20734868 Msa1318610:intron 50.0%
AATAGGGCTGTCACATGTGG+TGG + chr8_4:20735250-20735269 Msa1318610:intron 50.0%
TCATCTACTGAGGGTCCGAA+AGG - chr8_4:20735332-20735351 None:intergenic 50.0%
TCAATTGCCTCTCAGCTACC+AGG + chr8_4:20735632-20735651 Msa1318610:CDS 50.0%
AGTTCTTCCTGGTAGCTGAG+AGG - chr8_4:20735642-20735661 None:intergenic 50.0%
CACTTTCCCATTGAGCCATG+TGG - chr8_4:20735805-20735824 None:intergenic 50.0%
CACTGCACTGCAACTCTTGT+TGG + chr8_4:20736189-20736208 Msa1318610:CDS 50.0%
TGGTCGCAAATCAGACGACG+AGG + chr8_4:20735967-20735986 Msa1318610:CDS 55.0%
ACGCGGTCCCTTTACACCTG+AGG + chr8_4:20734718-20734737 Msa1318610:CDS 60.0%
ATCTATCGCCACGCGCCACA+TGG + chr8_4:20735787-20735806 Msa1318610:CDS 60.0%
CACGCGCCACATGGCTCAAT+GGG + chr8_4:20735796-20735815 Msa1318610:CDS 60.0%
CCATTGAGCCATGTGGCGCG+TGG - chr8_4:20735798-20735817 None:intergenic 65.0%
CCACGCGCCACATGGCTCAA+TGG + chr8_4:20735795-20735814 Msa1318610:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 20733590 20736249 20733590 ID=Msa1318610;Name=Msa1318610
chr8_4 mRNA 20733590 20736249 20733590 ID=Msa1318610-mRNA-1;Parent=Msa1318610;Name=Msa1318610-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.33|1|1|1|3|0|311
chr8_4 exon 20733590 20733770 20733590 ID=Msa1318610-mRNA-1:exon:7604;Parent=Msa1318610-mRNA-1
chr8_4 exon 20734654 20734783 20734654 ID=Msa1318610-mRNA-1:exon:7605;Parent=Msa1318610-mRNA-1
chr8_4 exon 20735625 20736249 20735625 ID=Msa1318610-mRNA-1:exon:7606;Parent=Msa1318610-mRNA-1
chr8_4 CDS 20733590 20733770 20733590 ID=Msa1318610-mRNA-1:cds;Parent=Msa1318610-mRNA-1
chr8_4 CDS 20734654 20734783 20734654 ID=Msa1318610-mRNA-1:cds;Parent=Msa1318610-mRNA-1
chr8_4 CDS 20735625 20736249 20735625 ID=Msa1318610-mRNA-1:cds;Parent=Msa1318610-mRNA-1
Gene Sequence

>Msa1318610

TTGCTTATAGTTTTCATTGCATTTTTTGAGAGAGAAAAGAAAATGGGAAGAACACCTTGTTGTGATAACAAAATGGGGTTGAAGAAAGGTCCATGGACTACTGAAGAAGATGAAGTTCTTGTTAATTTTATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCTAAGTTAGCAGGCCTTCTTCGTTGCGGTAAGAGTTGCCGGCTAAGATGGACCAACTACCTAAGACCTGATATTAAACGCGGTCCCTTTACACCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCTATACTTGGAAACAGGTGGGCTTCAATTGCCTCTCAGCTACCAGGAAGAACTGACAATGAGATCAAAAATTTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACCCATGAACCAATAGCCTCATCACATTACTTCCCAATTTCCAAATCAAATTCATCTATCGCCACGCGCCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACACATCTTTAATCAACAATAACAACATTCCTTCTTTGGCAAGCAACAAAACTGATTCTGACTATTTCCTTAAGATATGGAACTCTGAAGTTGGACAATCTTTTCGCACTGGTCGCAAATCAGACGACGAGGACGATGACGATAAAACTAAGTGCCAAAGTTCAATGTCTCAAGAAGGGTCATCTTGTAATAACAACAACAAATGTGGATCAGTTTCTGTTACTACTACAACAAGCAATGTGATGGAGGATTTTGAATGGAGAAACTACAAGTCATTTGATGTAGGTTATGATGATTCATCAAGCTCTAATGATCTTGAAGATTCATCTGACACTGCACTGCAACTCTTGTTGGATTTTCCTTCCAACAATGATATGAGCTTCTTAGAATGA
Protein sequence

>Msa1318610

LLIVFIAFFEREKKMGRTPCCDNKMGLKKGPWTTEEDEVLVNFIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWASIASQLPGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSHYFPISKSNSSIATRHMAQWESARLEAEARLSKDTSLINNNNIPSLASNKTDSDYFLKIWNSEVGQSFRTGRKSDDEDDDDKTKCQSSMSQEGSSCNNNNKCGSVSVTTTTSNVMEDFEWRNYKSFDVGYDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE*