Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319220 | sp|Q500W4|PLI2C_ARATH | 69.192 | 198 | 57 | 2 | 2 | 195 | 3 | 200 | 1.10e-101 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319220 | A0A072TZG0 | 98.537 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 1.04e-147 | 418 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1319220 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319220 | MtrunA17_Chr8g0349391 | 98.537 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 2.00e-151 | 418 |
| Msa1319220 | MtrunA17_Chr7g0247111 | 76.812 | 207 | 46 | 2 | 1 | 205 | 1 | 207 | 5.93e-111 | 316 |
| Msa1319220 | MtrunA17_Chr3g0113051 | 60.963 | 187 | 67 | 2 | 1 | 181 | 1 | 187 | 6.63e-82 | 241 |
| Msa1319220 | MtrunA17_Chr8g0386501 | 54.680 | 203 | 86 | 3 | 1 | 202 | 1 | 198 | 9.30e-75 | 224 |
| Msa1319220 | MtrunA17_Chr1g0152431 | 48.718 | 195 | 93 | 3 | 1 | 189 | 1 | 194 | 2.03e-62 | 192 |
| Msa1319220 | MtrunA17_Chr4g0059371 | 48.045 | 179 | 80 | 2 | 2 | 171 | 3 | 177 | 1.51e-56 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319220 | AT3G61230.1 | 69.192 | 198 | 57 | 2 | 2 | 195 | 3 | 200 | 1.12e-102 | 295 |
| Msa1319220 | AT1G01780.1 | 67.000 | 200 | 66 | 0 | 1 | 200 | 1 | 200 | 3.88e-100 | 288 |
| Msa1319220 | AT2G45800.1 | 69.608 | 204 | 56 | 4 | 1 | 198 | 1 | 204 | 2.30e-99 | 287 |
| Msa1319220 | AT3G55770.3 | 66.667 | 177 | 55 | 2 | 1 | 173 | 1 | 177 | 3.34e-87 | 256 |
| Msa1319220 | AT3G55770.5 | 66.667 | 177 | 55 | 2 | 1 | 173 | 1 | 177 | 3.34e-87 | 256 |
| Msa1319220 | AT3G55770.2 | 66.667 | 177 | 55 | 2 | 1 | 173 | 1 | 177 | 3.34e-87 | 256 |
| Msa1319220 | AT3G55770.1 | 66.667 | 177 | 55 | 2 | 1 | 173 | 1 | 177 | 3.34e-87 | 256 |
| Msa1319220 | AT2G39900.1 | 65.730 | 178 | 56 | 2 | 1 | 173 | 1 | 178 | 5.62e-86 | 253 |
| Msa1319220 | AT3G55770.7 | 55.924 | 211 | 55 | 3 | 1 | 173 | 1 | 211 | 3.73e-79 | 236 |
| Msa1319220 | AT3G55770.7 | 42.857 | 98 | 54 | 1 | 97 | 194 | 3 | 98 | 2.30e-19 | 83.2 |
| Msa1319220 | AT3G55770.7 | 35.088 | 114 | 40 | 1 | 3 | 82 | 101 | 214 | 4.15e-15 | 71.6 |
| Msa1319220 | AT2G45800.2 | 64.535 | 172 | 52 | 6 | 34 | 198 | 4 | 173 | 2.13e-69 | 210 |
| Msa1319220 | AT2G45800.2 | 50.685 | 73 | 36 | 0 | 3 | 75 | 68 | 140 | 2.59e-21 | 87.4 |
| Msa1319220 | AT1G10200.1 | 50.286 | 175 | 81 | 2 | 1 | 169 | 1 | 175 | 1.63e-60 | 187 |
| Msa1319220 | AT1G10200.1 | 43.373 | 83 | 47 | 0 | 3 | 85 | 103 | 185 | 2.53e-17 | 76.6 |
| Msa1319220 | AT3G55770.4 | 64.662 | 133 | 42 | 3 | 1 | 129 | 1 | 132 | 6.80e-55 | 171 |
| Msa1319220 | AT3G55770.4 | 42.857 | 98 | 54 | 1 | 97 | 194 | 3 | 98 | 1.25e-20 | 84.0 |
| Msa1319220 | AT3G55770.6 | 65.354 | 127 | 38 | 3 | 1 | 121 | 1 | 127 | 2.50e-52 | 165 |
| Msa1319220 | AT3G55770.6 | 42.857 | 98 | 54 | 1 | 97 | 194 | 3 | 98 | 7.86e-21 | 84.7 |
| Msa1319220 | AT1G10200.2 | 45.385 | 130 | 65 | 2 | 46 | 169 | 4 | 133 | 4.64e-37 | 126 |
| Msa1319220 | AT1G10200.2 | 43.373 | 83 | 47 | 0 | 3 | 85 | 61 | 143 | 4.94e-18 | 77.4 |
Find 35 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTCAAGAGGTTTCTTC+TGG | 0.235129 | 8_4:-21499602 | None:intergenic |
| GTTTCTTCTGGATGATCTTC+AGG | 0.252303 | 8_4:-21499590 | None:intergenic |
| TCAAGCTATGCTGCTCTTGA+TGG | 0.353414 | 8_4:+21499422 | Msa1319220:CDS |
| CAAAATGAACCCTGCAGTAT+AGG | 0.377575 | 8_4:-21499448 | None:intergenic |
| AGCAAGTCGCACATTTGTCC+AGG | 0.436853 | 8_4:-21499013 | None:intergenic |
| TGCTTTAGGTGTGCTCATGC+AGG | 0.437095 | 8_4:+21499383 | Msa1319220:CDS |
| TTGATGGTGTCCTATACTGC+AGG | 0.448405 | 8_4:+21499438 | Msa1319220:CDS |
| TCTACCACAAGACATGCTTT+AGG | 0.453453 | 8_4:+21499369 | Msa1319220:CDS |
| CTCTAAAACCGTCTATCCCC+TGG | 0.477045 | 8_4:+21499034 | Msa1319220:CDS |
| AACCGTCTATCCCCTGGAAA+AGG | 0.490548 | 8_4:+21499040 | Msa1319220:CDS |
| GAAGAAAACATGTCTTTCAC+TGG | 0.519623 | 8_4:+21497960 | None:intergenic |
| TTGTTACTGTTTCATTCAAG+AGG | 0.524503 | 8_4:-21499612 | None:intergenic |
| TTCCATGTTCAGTGGTACCC+TGG | 0.525905 | 8_4:+21498995 | Msa1319220:CDS |
| TCATTGCAAGGGAAATCTTA+CGG | 0.534756 | 8_4:+21498082 | Msa1319220:CDS |
| AACATGGAAGATAGTCTACT+TGG | 0.545011 | 8_4:-21498981 | None:intergenic |
| GGTGCTTCTGCTGATTGTGA+AGG | 0.545791 | 8_4:-21499569 | None:intergenic |
| ATTAAACAGGTGACACTGGA+AGG | 0.549370 | 8_4:+21499341 | Msa1319220:intron |
| CTTCAAATGTAGTCATTGCA+AGG | 0.555260 | 8_4:+21498070 | Msa1319220:CDS |
| GCAATAGAGAATTCCATCCA+TGG | 0.558350 | 8_4:-21498406 | None:intergenic |
| AGTACATACTCCTCCATGGA+TGG | 0.562913 | 8_4:+21498393 | Msa1319220:CDS |
| TTCTGACAAAGCAAATGAGC+TGG | 0.565336 | 8_4:+21498622 | Msa1319220:CDS |
| TACTCAAATCTGCACACAAG+AGG | 0.573033 | 8_4:+21499507 | Msa1319220:CDS |
| GCTTTAGGTGTGCTCATGCA+GGG | 0.590942 | 8_4:+21499384 | Msa1319220:CDS |
| TTCAAATGTAGTCATTGCAA+GGG | 0.595286 | 8_4:+21498071 | Msa1319220:CDS |
| TGATGGTGTCCTATACTGCA+GGG | 0.598936 | 8_4:+21499439 | Msa1319220:CDS |
| GATGAGTACATACTCCTCCA+TGG | 0.608526 | 8_4:+21498389 | Msa1319220:intron |
| GTCCAGGGTACCACTGAACA+TGG | 0.612761 | 8_4:-21498997 | None:intergenic |
| GCATAGCTTGAATGTGTGAG+AGG | 0.618734 | 8_4:-21499410 | None:intergenic |
| AAATCTGCACACAAGAGGAA+TGG | 0.618865 | 8_4:+21499512 | Msa1319220:CDS |
| TGGAACTCTTGATAAATGCA+AGG | 0.629692 | 8_4:+21497980 | Msa1319220:CDS |
| CATAGCTTGAATGTGTGAGA+GGG | 0.638300 | 8_4:-21499409 | None:intergenic |
| AGACTATCTTCCATGTTCAG+TGG | 0.654978 | 8_4:+21498987 | Msa1319220:CDS |
| GCAAGTCGCACATTTGTCCA+GGG | 0.661497 | 8_4:-21499012 | None:intergenic |
| CACACCTAAAGCATGTCTTG+TGG | 0.697099 | 8_4:-21499373 | None:intergenic |
| ATAGAGAATTCCATCCATGG+AGG | 0.764020 | 8_4:-21498403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATTTTTTGTTCATTT+TGG | + | chr8_4:21498566-21498585 | Msa1319220:intron | 10.0% |
| !! | TAAAATAAAAATTCAAGTAA+TGG | - | chr8_4:21498691-21498710 | None:intergenic | 10.0% |
| !! | AATTTATCTCTAATAATTTA+TGG | - | chr8_4:21498791-21498810 | None:intergenic | 10.0% |
| !!! | AATTGTTTCTTTTAAAAATT+TGG | + | chr8_4:21499127-21499146 | Msa1319220:intron | 10.0% |
| !!! | ATATAATTTTTTGTTCATTT+TGG | + | chr8_4:21498566-21498585 | Msa1319220:intron | 10.0% |
| !! | TAAAATAAAAATTCAAGTAA+TGG | - | chr8_4:21498691-21498710 | None:intergenic | 10.0% |
| !! | AATTTATCTCTAATAATTTA+TGG | - | chr8_4:21498791-21498810 | None:intergenic | 10.0% |
| !!! | AATTGTTTCTTTTAAAAATT+TGG | + | chr8_4:21499127-21499146 | Msa1319220:intron | 10.0% |
| !!! | TTAAAGCTTCAATTTATTTT+TGG | + | chr8_4:21498310-21498329 | Msa1319220:intron | 15.0% |
| !! | AAAATAAAAAATGAAGGATT+TGG | - | chr8_4:21498493-21498512 | None:intergenic | 15.0% |
| !! | AAAATTATATGTGTATCAAT+TGG | - | chr8_4:21498556-21498575 | None:intergenic | 15.0% |
| !!! | TTTTTTTGGTTTTATTAAAC+AGG | + | chr8_4:21499328-21499347 | Msa1319220:intron | 15.0% |
| !!! | TTAAAGCTTCAATTTATTTT+TGG | + | chr8_4:21498310-21498329 | Msa1319220:intron | 15.0% |
| !! | AAAATAAAAAATGAAGGATT+TGG | - | chr8_4:21498493-21498512 | None:intergenic | 15.0% |
| !! | AAAATTATATGTGTATCAAT+TGG | - | chr8_4:21498556-21498575 | None:intergenic | 15.0% |
| !!! | TTTTTTTGGTTTTATTAAAC+AGG | + | chr8_4:21499328-21499347 | Msa1319220:intron | 15.0% |
| !!! | TACAGCTTGTTTTAAAATTT+AGG | - | chr8_4:21498286-21498305 | None:intergenic | 20.0% |
| !! | TAAAAGATAAAGATCAGATA+TGG | - | chr8_4:21498654-21498673 | None:intergenic | 20.0% |
| !!! | AGACAAATTTCATATCTTTT+TGG | - | chr8_4:21498759-21498778 | None:intergenic | 20.0% |
| !!! | GCTTTTTTAAATCAAATTCT+TGG | - | chr8_4:21499180-21499199 | None:intergenic | 20.0% |
| !! | AATATGGAATTCATAAATGA+AGG | + | chr8_4:21499266-21499285 | Msa1319220:intron | 20.0% |
| !!! | TACAGCTTGTTTTAAAATTT+AGG | - | chr8_4:21498286-21498305 | None:intergenic | 20.0% |
| !! | TAAAAGATAAAGATCAGATA+TGG | - | chr8_4:21498654-21498673 | None:intergenic | 20.0% |
| !!! | AGACAAATTTCATATCTTTT+TGG | - | chr8_4:21498759-21498778 | None:intergenic | 20.0% |
| !!! | GCTTTTTTAAATCAAATTCT+TGG | - | chr8_4:21499180-21499199 | None:intergenic | 20.0% |
| !! | AATATGGAATTCATAAATGA+AGG | + | chr8_4:21499266-21499285 | Msa1319220:intron | 20.0% |
| !!! | ATGCTTATTTGAAGCATTTT+AGG | + | chr8_4:21498218-21498237 | Msa1319220:intron | 25.0% |
| ! | CCAATATTCAATAATGTCAT+TGG | - | chr8_4:21498365-21498384 | None:intergenic | 25.0% |
| ! | CCAATGACATTATTGAATAT+TGG | + | chr8_4:21498362-21498381 | Msa1319220:intron | 25.0% |
| ! | AAAAAGTTGAATTAGCCATA+TGG | + | chr8_4:21498723-21498742 | Msa1319220:intron | 25.0% |
| ! | AATTAGCCATATGGAAATTA+GGG | + | chr8_4:21498732-21498751 | Msa1319220:intron | 25.0% |
| !!! | GTATTGATCTTTTACAGAAT+AGG | + | chr8_4:21498955-21498974 | Msa1319220:intron | 25.0% |
| !! | AACAATTTTCCACAAAATCA+AGG | - | chr8_4:21499114-21499133 | None:intergenic | 25.0% |
| ! | TTACCTGATTTCATATAACT+TGG | + | chr8_4:21499153-21499172 | Msa1319220:intron | 25.0% |
| ! | TTTAAACACAAGCTGTAATA+TGG | + | chr8_4:21499250-21499269 | Msa1319220:intron | 25.0% |
| !! | AAAAAATGTGTTACGACTTT+TGG | - | chr8_4:21499314-21499333 | None:intergenic | 25.0% |
| !!! | AAAGTCGTAACACATTTTTT+TGG | + | chr8_4:21499314-21499333 | Msa1319220:intron | 25.0% |
| !!! | ATGCTTATTTGAAGCATTTT+AGG | + | chr8_4:21498218-21498237 | Msa1319220:intron | 25.0% |
| ! | CCAATATTCAATAATGTCAT+TGG | - | chr8_4:21498365-21498384 | None:intergenic | 25.0% |
| ! | CCAATGACATTATTGAATAT+TGG | + | chr8_4:21498362-21498381 | Msa1319220:intron | 25.0% |
| ! | AAAAAGTTGAATTAGCCATA+TGG | + | chr8_4:21498723-21498742 | Msa1319220:intron | 25.0% |
| ! | AATTAGCCATATGGAAATTA+GGG | + | chr8_4:21498732-21498751 | Msa1319220:intron | 25.0% |
| !!! | GTATTGATCTTTTACAGAAT+AGG | + | chr8_4:21498955-21498974 | Msa1319220:intron | 25.0% |
| !! | AACAATTTTCCACAAAATCA+AGG | - | chr8_4:21499114-21499133 | None:intergenic | 25.0% |
| ! | TTACCTGATTTCATATAACT+TGG | + | chr8_4:21499153-21499172 | Msa1319220:intron | 25.0% |
| ! | TTTAAACACAAGCTGTAATA+TGG | + | chr8_4:21499250-21499269 | Msa1319220:intron | 25.0% |
| !! | AAAAAATGTGTTACGACTTT+TGG | - | chr8_4:21499314-21499333 | None:intergenic | 25.0% |
| !!! | AAAGTCGTAACACATTTTTT+TGG | + | chr8_4:21499314-21499333 | Msa1319220:intron | 25.0% |
| !! | TACATTTGAAGCAGCTTTTA+TGG | - | chr8_4:21498061-21498080 | None:intergenic | 30.0% |
| TTCAAATGTAGTCATTGCAA+GGG | + | chr8_4:21498071-21498090 | Msa1319220:CDS | 30.0% | |
| ! | AGGAGCATATGAAGAATTTA+AGG | - | chr8_4:21498145-21498164 | None:intergenic | 30.0% |
| ATGTCATTGGTATCTCATTT+AGG | - | chr8_4:21498352-21498371 | None:intergenic | 30.0% | |
| ! | ACATTTTGAACAGCTTTTCA+AGG | + | chr8_4:21498434-21498453 | Msa1319220:CDS | 30.0% |
| GAATTAGCCATATGGAAATT+AGG | + | chr8_4:21498731-21498750 | Msa1319220:intron | 30.0% | |
| ! | TTCATAAATGAAGGTGCATT+CGG | + | chr8_4:21499275-21499294 | Msa1319220:intron | 30.0% |
| ! | TTTTATTAAACAGGTGACAC+TGG | + | chr8_4:21499337-21499356 | Msa1319220:intron | 30.0% |
| ! | TCATTTTGCACAACTTTTCA+TGG | + | chr8_4:21499463-21499482 | Msa1319220:CDS | 30.0% |
| !! | TACATTTGAAGCAGCTTTTA+TGG | - | chr8_4:21498061-21498080 | None:intergenic | 30.0% |
| TTCAAATGTAGTCATTGCAA+GGG | + | chr8_4:21498071-21498090 | Msa1319220:CDS | 30.0% | |
| ! | AGGAGCATATGAAGAATTTA+AGG | - | chr8_4:21498145-21498164 | None:intergenic | 30.0% |
| ATGTCATTGGTATCTCATTT+AGG | - | chr8_4:21498352-21498371 | None:intergenic | 30.0% | |
| ! | ACATTTTGAACAGCTTTTCA+AGG | + | chr8_4:21498434-21498453 | Msa1319220:CDS | 30.0% |
| GAATTAGCCATATGGAAATT+AGG | + | chr8_4:21498731-21498750 | Msa1319220:intron | 30.0% | |
| ! | TTCATAAATGAAGGTGCATT+CGG | + | chr8_4:21499275-21499294 | Msa1319220:intron | 30.0% |
| ! | TTTTATTAAACAGGTGACAC+TGG | + | chr8_4:21499337-21499356 | Msa1319220:intron | 30.0% |
| ! | TCATTTTGCACAACTTTTCA+TGG | + | chr8_4:21499463-21499482 | Msa1319220:CDS | 30.0% |
| TGGAACTCTTGATAAATGCA+AGG | + | chr8_4:21497980-21497999 | Msa1319220:CDS | 35.0% | |
| ! | TTGAAGCAGCTTTTATGGTA+TGG | - | chr8_4:21498056-21498075 | None:intergenic | 35.0% |
| CTTCAAATGTAGTCATTGCA+AGG | + | chr8_4:21498070-21498089 | Msa1319220:CDS | 35.0% | |
| TCATTGCAAGGGAAATCTTA+CGG | + | chr8_4:21498082-21498101 | Msa1319220:CDS | 35.0% | |
| !! | GGCAATTTTAGCAAGATCTT+TGG | + | chr8_4:21498462-21498481 | Msa1319220:CDS | 35.0% |
| TTTGGTCCCTAATTTCCATA+TGG | - | chr8_4:21498741-21498760 | None:intergenic | 35.0% | |
| AACATGGAAGATAGTCTACT+TGG | - | chr8_4:21498984-21499003 | None:intergenic | 35.0% | |
| ! | TGTTGTGATCCTTGATTTTG+TGG | + | chr8_4:21499102-21499121 | Msa1319220:intron | 35.0% |
| GGTCCAAGTTATATGAAATC+AGG | - | chr8_4:21499159-21499178 | None:intergenic | 35.0% | |
| AAAGCAATCATACGTTTCGT+TGG | + | chr8_4:21499195-21499214 | Msa1319220:intron | 35.0% | |
| ATCATACGTTTCGTTGGATA+TGG | + | chr8_4:21499201-21499220 | Msa1319220:intron | 35.0% | |
| TGGAACTCTTGATAAATGCA+AGG | + | chr8_4:21497980-21497999 | Msa1319220:CDS | 35.0% | |
| ! | TTGAAGCAGCTTTTATGGTA+TGG | - | chr8_4:21498056-21498075 | None:intergenic | 35.0% |
| CTTCAAATGTAGTCATTGCA+AGG | + | chr8_4:21498070-21498089 | Msa1319220:CDS | 35.0% | |
| TCATTGCAAGGGAAATCTTA+CGG | + | chr8_4:21498082-21498101 | Msa1319220:CDS | 35.0% | |
| !! | GGCAATTTTAGCAAGATCTT+TGG | + | chr8_4:21498462-21498481 | Msa1319220:CDS | 35.0% |
| TTTGGTCCCTAATTTCCATA+TGG | - | chr8_4:21498741-21498760 | None:intergenic | 35.0% | |
| AACATGGAAGATAGTCTACT+TGG | - | chr8_4:21498984-21499003 | None:intergenic | 35.0% | |
| ! | TGTTGTGATCCTTGATTTTG+TGG | + | chr8_4:21499102-21499121 | Msa1319220:intron | 35.0% |
| GGTCCAAGTTATATGAAATC+AGG | - | chr8_4:21499159-21499178 | None:intergenic | 35.0% | |
| AAAGCAATCATACGTTTCGT+TGG | + | chr8_4:21499195-21499214 | Msa1319220:intron | 35.0% | |
| ATCATACGTTTCGTTGGATA+TGG | + | chr8_4:21499201-21499220 | Msa1319220:intron | 35.0% | |
| ATAGAGAATTCCATCCATGG+AGG | - | chr8_4:21498406-21498425 | None:intergenic | 40.0% | |
| GCAATAGAGAATTCCATCCA+TGG | - | chr8_4:21498409-21498428 | None:intergenic | 40.0% | |
| !! | GAACAGCTTTTCAAGGAATC+TGG | + | chr8_4:21498441-21498460 | Msa1319220:CDS | 40.0% |
| TTCTGACAAAGCAAATGAGC+TGG | + | chr8_4:21498622-21498641 | Msa1319220:CDS | 40.0% | |
| AGACTATCTTCCATGTTCAG+TGG | + | chr8_4:21498987-21499006 | Msa1319220:CDS | 40.0% | |
| ! | TGTCGCGATTCTTGATTTTG+AGG | + | chr8_4:21499065-21499084 | Msa1319220:intron | 40.0% |
| ! | TGTGTTACGACTTTTGGTCA+CGG | - | chr8_4:21499308-21499327 | None:intergenic | 40.0% |
| ATTAAACAGGTGACACTGGA+AGG | + | chr8_4:21499341-21499360 | Msa1319220:intron | 40.0% | |
| TCTACCACAAGACATGCTTT+AGG | + | chr8_4:21499369-21499388 | Msa1319220:CDS | 40.0% | |
| CATAGCTTGAATGTGTGAGA+GGG | - | chr8_4:21499412-21499431 | None:intergenic | 40.0% | |
| CAAAATGAACCCTGCAGTAT+AGG | - | chr8_4:21499451-21499470 | None:intergenic | 40.0% | |
| ! | GCACAACTTTTCATGGAGAA+AGG | + | chr8_4:21499470-21499489 | Msa1319220:CDS | 40.0% |
| TACTCAAATCTGCACACAAG+AGG | + | chr8_4:21499507-21499526 | Msa1319220:CDS | 40.0% | |
| AAATCTGCACACAAGAGGAA+TGG | + | chr8_4:21499512-21499531 | Msa1319220:CDS | 40.0% | |
| GTTTCTTCTGGATGATCTTC+AGG | - | chr8_4:21499593-21499612 | None:intergenic | 40.0% | |
| ATAGAGAATTCCATCCATGG+AGG | - | chr8_4:21498406-21498425 | None:intergenic | 40.0% | |
| GCAATAGAGAATTCCATCCA+TGG | - | chr8_4:21498409-21498428 | None:intergenic | 40.0% | |
| !! | GAACAGCTTTTCAAGGAATC+TGG | + | chr8_4:21498441-21498460 | Msa1319220:CDS | 40.0% |
| TTCTGACAAAGCAAATGAGC+TGG | + | chr8_4:21498622-21498641 | Msa1319220:CDS | 40.0% | |
| AGACTATCTTCCATGTTCAG+TGG | + | chr8_4:21498987-21499006 | Msa1319220:CDS | 40.0% | |
| ! | TGTCGCGATTCTTGATTTTG+AGG | + | chr8_4:21499065-21499084 | Msa1319220:intron | 40.0% |
| ! | TGTGTTACGACTTTTGGTCA+CGG | - | chr8_4:21499308-21499327 | None:intergenic | 40.0% |
| ATTAAACAGGTGACACTGGA+AGG | + | chr8_4:21499341-21499360 | Msa1319220:intron | 40.0% | |
| TCTACCACAAGACATGCTTT+AGG | + | chr8_4:21499369-21499388 | Msa1319220:CDS | 40.0% | |
| CATAGCTTGAATGTGTGAGA+GGG | - | chr8_4:21499412-21499431 | None:intergenic | 40.0% | |
| CAAAATGAACCCTGCAGTAT+AGG | - | chr8_4:21499451-21499470 | None:intergenic | 40.0% | |
| ! | GCACAACTTTTCATGGAGAA+AGG | + | chr8_4:21499470-21499489 | Msa1319220:CDS | 40.0% |
| TACTCAAATCTGCACACAAG+AGG | + | chr8_4:21499507-21499526 | Msa1319220:CDS | 40.0% | |
| AAATCTGCACACAAGAGGAA+TGG | + | chr8_4:21499512-21499531 | Msa1319220:CDS | 40.0% | |
| GTTTCTTCTGGATGATCTTC+AGG | - | chr8_4:21499593-21499612 | None:intergenic | 40.0% | |
| ! | TGGAGGAGTATGTACTCATC+TGG | - | chr8_4:21498389-21498408 | None:intergenic | 45.0% |
| GATGAGTACATACTCCTCCA+TGG | + | chr8_4:21498389-21498408 | Msa1319220:intron | 45.0% | |
| AGTACATACTCCTCCATGGA+TGG | + | chr8_4:21498393-21498412 | Msa1319220:CDS | 45.0% | |
| ! | AACCTTTTCCAGGGGATAGA+CGG | - | chr8_4:21499045-21499064 | None:intergenic | 45.0% |
| ! | ATCGCGACAAACCTTTTCCA+GGG | - | chr8_4:21499054-21499073 | None:intergenic | 45.0% |
| ! | AATCGCGACAAACCTTTTCC+AGG | - | chr8_4:21499055-21499074 | None:intergenic | 45.0% |
| CACACCTAAAGCATGTCTTG+TGG | - | chr8_4:21499376-21499395 | None:intergenic | 45.0% | |
| GCATAGCTTGAATGTGTGAG+AGG | - | chr8_4:21499413-21499432 | None:intergenic | 45.0% | |
| TCAAGCTATGCTGCTCTTGA+TGG | + | chr8_4:21499422-21499441 | Msa1319220:CDS | 45.0% | |
| !! | TTGATGGTGTCCTATACTGC+AGG | + | chr8_4:21499438-21499457 | Msa1319220:CDS | 45.0% |
| ! | TGATGGTGTCCTATACTGCA+GGG | + | chr8_4:21499439-21499458 | Msa1319220:CDS | 45.0% |
| ! | TGGAGGAGTATGTACTCATC+TGG | - | chr8_4:21498389-21498408 | None:intergenic | 45.0% |
| GATGAGTACATACTCCTCCA+TGG | + | chr8_4:21498389-21498408 | Msa1319220:intron | 45.0% | |
| AGTACATACTCCTCCATGGA+TGG | + | chr8_4:21498393-21498412 | Msa1319220:CDS | 45.0% | |
| ! | AACCTTTTCCAGGGGATAGA+CGG | - | chr8_4:21499045-21499064 | None:intergenic | 45.0% |
| ! | ATCGCGACAAACCTTTTCCA+GGG | - | chr8_4:21499054-21499073 | None:intergenic | 45.0% |
| ! | AATCGCGACAAACCTTTTCC+AGG | - | chr8_4:21499055-21499074 | None:intergenic | 45.0% |
| CACACCTAAAGCATGTCTTG+TGG | - | chr8_4:21499376-21499395 | None:intergenic | 45.0% | |
| GCATAGCTTGAATGTGTGAG+AGG | - | chr8_4:21499413-21499432 | None:intergenic | 45.0% | |
| TCAAGCTATGCTGCTCTTGA+TGG | + | chr8_4:21499422-21499441 | Msa1319220:CDS | 45.0% | |
| !! | TTGATGGTGTCCTATACTGC+AGG | + | chr8_4:21499438-21499457 | Msa1319220:CDS | 45.0% |
| ! | TGATGGTGTCCTATACTGCA+GGG | + | chr8_4:21499439-21499458 | Msa1319220:CDS | 45.0% |
| !! | TATGTATATAAATAATTAAA+AGG | - | chr8_4:21498165-21498184 | None:intergenic | 5.0% |
| !! | AAAATTAAAATAAAAAATGA+AGG | - | chr8_4:21498499-21498518 | None:intergenic | 5.0% |
| !! | TATGTATATAAATAATTAAA+AGG | - | chr8_4:21498165-21498184 | None:intergenic | 5.0% |
| !! | AAAATTAAAATAAAAAATGA+AGG | - | chr8_4:21498499-21498518 | None:intergenic | 5.0% |
| TTCCATGTTCAGTGGTACCC+TGG | + | chr8_4:21498995-21499014 | Msa1319220:CDS | 50.0% | |
| GCAAGTCGCACATTTGTCCA+GGG | - | chr8_4:21499015-21499034 | None:intergenic | 50.0% | |
| AGCAAGTCGCACATTTGTCC+AGG | - | chr8_4:21499016-21499035 | None:intergenic | 50.0% | |
| !! | CTCTAAAACCGTCTATCCCC+TGG | + | chr8_4:21499034-21499053 | Msa1319220:CDS | 50.0% |
| AACCGTCTATCCCCTGGAAA+AGG | + | chr8_4:21499040-21499059 | Msa1319220:CDS | 50.0% | |
| ! | TCGCGACAAACCTTTTCCAG+GGG | - | chr8_4:21499053-21499072 | None:intergenic | 50.0% |
| ! | CGACTTTTGGTCACGGAGTT+TGG | - | chr8_4:21499301-21499320 | None:intergenic | 50.0% |
| ! | TGCTTTAGGTGTGCTCATGC+AGG | + | chr8_4:21499383-21499402 | Msa1319220:CDS | 50.0% |
| ! | GCTTTAGGTGTGCTCATGCA+GGG | + | chr8_4:21499384-21499403 | Msa1319220:CDS | 50.0% |
| ! | GGTGCTTCTGCTGATTGTGA+AGG | - | chr8_4:21499572-21499591 | None:intergenic | 50.0% |
| TTCCATGTTCAGTGGTACCC+TGG | + | chr8_4:21498995-21499014 | Msa1319220:CDS | 50.0% | |
| GCAAGTCGCACATTTGTCCA+GGG | - | chr8_4:21499015-21499034 | None:intergenic | 50.0% | |
| AGCAAGTCGCACATTTGTCC+AGG | - | chr8_4:21499016-21499035 | None:intergenic | 50.0% | |
| !! | CTCTAAAACCGTCTATCCCC+TGG | + | chr8_4:21499034-21499053 | Msa1319220:CDS | 50.0% |
| AACCGTCTATCCCCTGGAAA+AGG | + | chr8_4:21499040-21499059 | Msa1319220:CDS | 50.0% | |
| ! | TCGCGACAAACCTTTTCCAG+GGG | - | chr8_4:21499053-21499072 | None:intergenic | 50.0% |
| ! | CGACTTTTGGTCACGGAGTT+TGG | - | chr8_4:21499301-21499320 | None:intergenic | 50.0% |
| ! | TGCTTTAGGTGTGCTCATGC+AGG | + | chr8_4:21499383-21499402 | Msa1319220:CDS | 50.0% |
| ! | GCTTTAGGTGTGCTCATGCA+GGG | + | chr8_4:21499384-21499403 | Msa1319220:CDS | 50.0% |
| ! | GGTGCTTCTGCTGATTGTGA+AGG | - | chr8_4:21499572-21499591 | None:intergenic | 50.0% |
| ! | GTCCAGGGTACCACTGAACA+TGG | - | chr8_4:21499000-21499019 | None:intergenic | 55.0% |
| ! | GTCCAGGGTACCACTGAACA+TGG | - | chr8_4:21499000-21499019 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 21497969 | 21499619 | 21497969 | ID=Msa1319220;Name=Msa1319220 |
| chr8_4 | mRNA | 21497969 | 21499619 | 21497969 | ID=Msa1319220-mRNA-1;Parent=Msa1319220;Name=Msa1319220-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|5|0|205 |
| chr8_4 | exon | 21497969 | 21498103 | 21497969 | ID=Msa1319220-mRNA-1:exon:7814;Parent=Msa1319220-mRNA-1 |
| chr8_4 | exon | 21498390 | 21498483 | 21498390 | ID=Msa1319220-mRNA-1:exon:7815;Parent=Msa1319220-mRNA-1 |
| chr8_4 | exon | 21498615 | 21498643 | 21498615 | ID=Msa1319220-mRNA-1:exon:7816;Parent=Msa1319220-mRNA-1 |
| chr8_4 | exon | 21498972 | 21499061 | 21498972 | ID=Msa1319220-mRNA-1:exon:7817;Parent=Msa1319220-mRNA-1 |
| chr8_4 | exon | 21499350 | 21499619 | 21499350 | ID=Msa1319220-mRNA-1:exon:7818;Parent=Msa1319220-mRNA-1 |
| chr8_4 | CDS | 21497969 | 21498103 | 21497969 | ID=Msa1319220-mRNA-1:cds;Parent=Msa1319220-mRNA-1 |
| chr8_4 | CDS | 21498390 | 21498483 | 21498390 | ID=Msa1319220-mRNA-1:cds;Parent=Msa1319220-mRNA-1 |
| chr8_4 | CDS | 21498615 | 21498643 | 21498615 | ID=Msa1319220-mRNA-1:cds;Parent=Msa1319220-mRNA-1 |
| chr8_4 | CDS | 21498972 | 21499061 | 21498972 | ID=Msa1319220-mRNA-1:cds;Parent=Msa1319220-mRNA-1 |
| chr8_4 | CDS | 21499350 | 21499619 | 21499350 | ID=Msa1319220-mRNA-1:cds;Parent=Msa1319220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
