Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319600 | sp|K4BIZ9|WRK70_SOLLC | 37.838 | 185 | 98 | 5 | 5 | 185 | 10 | 181 | 1.01e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319600 | A0A072TQ59 | 79.930 | 284 | 25 | 3 | 1 | 252 | 1 | 284 | 9.29e-143 | 410 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1319600 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319600 | MtrunA17_Chr8g0350621 | 63.559 | 236 | 67 | 9 | 7 | 237 | 6 | 227 | 1.04e-94 | 278 |
| Msa1319600 | MtrunA17_Chr8g0350641 | 87.050 | 139 | 16 | 2 | 1 | 137 | 1 | 139 | 2.79e-75 | 224 |
| Msa1319600 | MtrunA17_Chr8g0334541 | 53.023 | 215 | 73 | 8 | 7 | 213 | 4 | 198 | 1.78e-65 | 205 |
| Msa1319600 | MtrunA17_Chr8g0350631 | 73.103 | 145 | 9 | 1 | 138 | 252 | 5 | 149 | 6.48e-61 | 189 |
| Msa1319600 | MtrunA17_Chr7g0244981 | 47.907 | 215 | 98 | 8 | 7 | 214 | 13 | 220 | 3.45e-59 | 189 |
| Msa1319600 | MtrunA17_Chr7g0244971 | 47.664 | 214 | 98 | 8 | 7 | 213 | 14 | 220 | 4.39e-59 | 189 |
| Msa1319600 | MtrunA17_Chr2g0315371 | 38.813 | 219 | 110 | 7 | 4 | 200 | 11 | 227 | 6.02e-40 | 139 |
| Msa1319600 | MtrunA17_Chr2g0315381 | 38.645 | 251 | 124 | 8 | 7 | 231 | 13 | 259 | 9.31e-39 | 137 |
| Msa1319600 | MtrunA17_Chr2g0315361 | 38.057 | 247 | 112 | 9 | 4 | 216 | 11 | 250 | 3.53e-35 | 127 |
| Msa1319600 | MtrunA17_Chr3g0128671 | 40.588 | 170 | 88 | 5 | 14 | 176 | 23 | 186 | 9.58e-26 | 102 |
| Msa1319600 | MtrunA17_Chr5g0428351 | 36.257 | 171 | 90 | 6 | 9 | 178 | 92 | 244 | 7.48e-25 | 100 |
| Msa1319600 | MtrunA17_Chr3g0126391 | 31.500 | 200 | 100 | 8 | 9 | 181 | 8 | 197 | 6.36e-19 | 84.7 |
| Msa1319600 | MtrunA17_Chr2g0315401 | 41.739 | 115 | 55 | 5 | 145 | 252 | 19 | 128 | 1.36e-16 | 74.3 |
| Msa1319600 | MtrunA17_Chr7g0275531 | 28.261 | 184 | 97 | 5 | 9 | 176 | 13 | 177 | 2.90e-16 | 77.0 |
| Msa1319600 | MtrunA17_Chr8g0387981 | 24.757 | 206 | 119 | 6 | 5 | 188 | 9 | 200 | 2.41e-15 | 74.7 |
| Msa1319600 | MtrunA17_Chr8g0347251 | 48.333 | 60 | 31 | 0 | 117 | 176 | 136 | 195 | 6.47e-15 | 73.2 |
| Msa1319600 | MtrunA17_Chr2g0315341 | 49.254 | 67 | 30 | 2 | 154 | 218 | 2 | 66 | 3.27e-13 | 64.7 |
| Msa1319600 | MtrunA17_Chr5g0443131 | 50.000 | 58 | 26 | 1 | 117 | 174 | 157 | 211 | 1.00e-12 | 66.6 |
| Msa1319600 | MtrunA17_Chr5g0418781 | 45.312 | 64 | 29 | 2 | 117 | 177 | 124 | 184 | 1.66e-11 | 62.8 |
| Msa1319600 | MtrunA17_Chr7g0270191 | 46.774 | 62 | 30 | 1 | 117 | 178 | 145 | 203 | 2.64e-11 | 62.4 |
| Msa1319600 | MtrunA17_Chr4g0051881 | 48.276 | 58 | 27 | 1 | 117 | 174 | 178 | 232 | 2.69e-11 | 62.8 |
| Msa1319600 | MtrunA17_Chr3g0129321 | 46.552 | 58 | 28 | 1 | 117 | 174 | 118 | 172 | 8.36e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319600 | AT3G56400.1 | 32.432 | 185 | 97 | 4 | 6 | 176 | 9 | 179 | 2.12e-25 | 102 |
| Msa1319600 | AT1G66600.1 | 34.831 | 178 | 101 | 3 | 7 | 184 | 8 | 170 | 1.26e-24 | 98.6 |
| Msa1319600 | AT1G66550.2 | 31.683 | 202 | 112 | 5 | 7 | 205 | 8 | 186 | 3.57e-24 | 97.4 |
| Msa1319600 | AT5G22570.1 | 30.870 | 230 | 136 | 6 | 5 | 226 | 7 | 221 | 9.15e-24 | 97.4 |
| Msa1319600 | AT2G46400.1 | 32.768 | 177 | 106 | 5 | 9 | 182 | 3 | 169 | 1.17e-23 | 97.1 |
| Msa1319600 | AT1G66550.1 | 31.156 | 199 | 122 | 4 | 7 | 205 | 8 | 191 | 1.23e-23 | 96.3 |
| Msa1319600 | AT1G66560.1 | 35.556 | 180 | 95 | 4 | 8 | 184 | 9 | 170 | 1.31e-23 | 96.3 |
| Msa1319600 | AT5G01900.1 | 33.523 | 176 | 98 | 5 | 7 | 176 | 7 | 169 | 1.59e-22 | 93.6 |
| Msa1319600 | AT1G80590.1 | 32.941 | 170 | 81 | 4 | 7 | 176 | 8 | 144 | 3.28e-21 | 89.4 |
| Msa1319600 | AT2G40750.1 | 28.017 | 232 | 134 | 7 | 7 | 208 | 14 | 242 | 1.14e-18 | 84.3 |
| Msa1319600 | AT4G11070.1 | 28.947 | 190 | 112 | 4 | 9 | 176 | 12 | 200 | 1.07e-17 | 81.3 |
| Msa1319600 | AT5G24110.1 | 27.941 | 204 | 118 | 7 | 1 | 189 | 1 | 190 | 4.03e-14 | 70.9 |
| Msa1319600 | AT4G11070.2 | 30.114 | 176 | 96 | 4 | 9 | 176 | 12 | 168 | 4.17e-14 | 70.9 |
| Msa1319600 | AT4G23810.1 | 26.108 | 203 | 115 | 5 | 9 | 176 | 15 | 217 | 4.20e-14 | 71.2 |
| Msa1319600 | AT2G40740.1 | 45.833 | 72 | 38 | 1 | 111 | 182 | 168 | 238 | 9.44e-14 | 69.7 |
| Msa1319600 | AT2G40740.3 | 45.833 | 72 | 38 | 1 | 111 | 182 | 177 | 247 | 1.01e-13 | 69.7 |
| Msa1319600 | AT1G29860.1 | 35.238 | 105 | 58 | 2 | 101 | 198 | 120 | 221 | 1.48e-11 | 63.5 |
| Msa1319600 | AT4G18170.1 | 50.000 | 58 | 26 | 1 | 117 | 174 | 172 | 226 | 1.98e-11 | 63.5 |
| Msa1319600 | AT5G49520.1 | 49.153 | 59 | 27 | 1 | 117 | 175 | 221 | 276 | 2.01e-11 | 63.5 |
| Msa1319600 | AT1G69310.4 | 46.552 | 58 | 28 | 1 | 117 | 174 | 147 | 201 | 2.60e-11 | 62.8 |
| Msa1319600 | AT1G69310.2 | 46.552 | 58 | 28 | 1 | 117 | 174 | 147 | 201 | 2.60e-11 | 62.8 |
| Msa1319600 | AT1G69310.1 | 46.552 | 58 | 28 | 1 | 117 | 174 | 147 | 201 | 2.60e-11 | 62.8 |
| Msa1319600 | AT5G46350.1 | 46.269 | 67 | 31 | 2 | 110 | 174 | 174 | 237 | 4.03e-11 | 62.4 |
| Msa1319600 | AT2G03340.1 | 33.065 | 124 | 68 | 4 | 60 | 174 | 352 | 469 | 4.37e-11 | 62.8 |
| Msa1319600 | AT1G13960.1 | 37.374 | 99 | 55 | 3 | 77 | 174 | 371 | 463 | 4.71e-11 | 62.8 |
| Msa1319600 | AT4G39410.1 | 36.082 | 97 | 52 | 3 | 100 | 193 | 203 | 292 | 5.85e-11 | 62.0 |
Find 42 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCACATGCTTGGTTGTT+AGG | 0.241140 | 8_4:-23009666 | None:intergenic |
| TTCTTTGCTCATGAGAAATA+TGG | 0.243077 | 8_4:-23007325 | None:intergenic |
| AGATGATGGTGATGACAAAA+AGG | 0.286879 | 8_4:-23009848 | None:intergenic |
| ATTAATTCTCACCTTAAGTA+TGG | 0.296832 | 8_4:-23008457 | None:intergenic |
| GTTATTAAAGCTAAGTAATA+AGG | 0.311772 | 8_4:-23009794 | None:intergenic |
| ACAAGTGTGGTGACCATAAT+AGG | 0.313678 | 8_4:-23009722 | None:intergenic |
| TTGTATAAGACAACCTATTA+TGG | 0.320161 | 8_4:+23009709 | Msa1319600:CDS |
| GGGCATCAATGGAGAAAATA+TGG | 0.334994 | 8_4:+23008412 | Msa1319600:CDS |
| GTCAACCTTAGTATCATCTA+AGG | 0.337000 | 8_4:-23009920 | None:intergenic |
| TCAACAAATCTCCATACTTA+AGG | 0.405104 | 8_4:+23008446 | Msa1319600:CDS |
| TTAGGATCAAGTATGTTGTC+AGG | 0.434402 | 8_4:-23009760 | None:intergenic |
| AATAAGGAAGAAGCGTCATT+AGG | 0.434765 | 8_4:-23009778 | None:intergenic |
| CAGATGATGATGGGCATCAA+TGG | 0.436426 | 8_4:+23008401 | Msa1319600:CDS |
| AATGGAGAAGTATCACATAA+AGG | 0.439739 | 8_4:+23007158 | None:intergenic |
| ATCAAGTATGTTGTCAGGGT+TGG | 0.471971 | 8_4:-23009755 | None:intergenic |
| ATCAACCTTAGATGATACTA+AGG | 0.474448 | 8_4:+23009915 | Msa1319600:CDS |
| CCCTAGTGACCAAATTCAAA+AGG | 0.484944 | 8_4:+23007350 | Msa1319600:CDS |
| TTGAATTCTATGCACATGCT+TGG | 0.487749 | 8_4:-23009674 | None:intergenic |
| ATTCAAAAGGAATCTTCCAT+TGG | 0.506526 | 8_4:+23007363 | Msa1319600:CDS |
| AAGTCGACAGATCTAACTAC+TGG | 0.506813 | 8_4:-23007387 | None:intergenic |
| CTAGAGGATGTAACAAAAGA+AGG | 0.511825 | 8_4:+23007439 | Msa1319600:CDS |
| CATCACTAAAAGCCATCAAA+AGG | 0.529575 | 8_4:-23010029 | None:intergenic |
| GAAACTCCAACAGATGATGA+TGG | 0.529624 | 8_4:+23008391 | Msa1319600:CDS |
| GAAGTATCACATAAAGGCAA+TGG | 0.530517 | 8_4:+23007164 | Msa1319600:CDS |
| TCACATAAAGGCAATGGAAG+AGG | 0.530916 | 8_4:+23007170 | Msa1319600:CDS |
| TAATAGGTTGTCTTATACAA+GGG | 0.532237 | 8_4:-23009706 | None:intergenic |
| GTATCATCTAAGGTTGATGA+AGG | 0.548960 | 8_4:-23009910 | None:intergenic |
| TGATGCCCATCATCATCTGT+TGG | 0.549449 | 8_4:-23008397 | None:intergenic |
| TATTATGGTCACCACACTTG+TGG | 0.557212 | 8_4:+23009724 | Msa1319600:CDS |
| ATATGTGCAGGAACTACTAC+AGG | 0.562723 | 8_4:+23009617 | Msa1319600:intron |
| TAGGATCAAGTATGTTGTCA+GGG | 0.578284 | 8_4:-23009759 | None:intergenic |
| AGATCTAACTACTGGACCAA+TGG | 0.579653 | 8_4:-23007379 | None:intergenic |
| AAGAGTACTTCTGCATCTAG+AGG | 0.587314 | 8_4:+23007423 | Msa1319600:CDS |
| ATAATAGGTTGTCTTATACA+AGG | 0.590401 | 8_4:-23009707 | None:intergenic |
| AAACTCCAACAGATGATGAT+GGG | 0.602197 | 8_4:+23008392 | Msa1319600:CDS |
| TAGGTTGTCTTATACAAGGG+AGG | 0.608017 | 8_4:-23009703 | None:intergenic |
| CAGAAACATTACAGAAACAT+GGG | 0.608792 | 8_4:+23008357 | Msa1319600:intron |
| TGGACAAGTTTCCACAAGTG+TGG | 0.613057 | 8_4:-23009735 | None:intergenic |
| CAATGGAAGAGGTTATGAGA+GGG | 0.615112 | 8_4:+23007181 | Msa1319600:CDS |
| GCAATGGAAGAGGTTATGAG+AGG | 0.616096 | 8_4:+23007180 | Msa1319600:CDS |
| CATTACAGAAACATGGGAGA+AGG | 0.619468 | 8_4:+23008363 | Msa1319600:CDS |
| GCAGAAACATTACAGAAACA+TGG | 0.620347 | 8_4:+23008356 | Msa1319600:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAGATTATTAAACT+AGG | + | chr8_4:23007650-23007669 | Msa1319600:intron | 10.0% |
| !! | AATTATATGCAAAAAAAATA+TGG | - | chr8_4:23007790-23007809 | None:intergenic | 10.0% |
| !!! | TATTATTTTTTTTGGTTAAA+AGG | + | chr8_4:23007847-23007866 | Msa1319600:intron | 10.0% |
| !!! | AAGTATATATGTTTTTTTTA+AGG | + | chr8_4:23008596-23008615 | Msa1319600:intron | 10.0% |
| !! | ATAATTAATTGAAATTTGAA+AGG | - | chr8_4:23008702-23008721 | None:intergenic | 10.0% |
| !! | TATTTATTTATTTACTCTTA+AGG | - | chr8_4:23008807-23008826 | None:intergenic | 10.0% |
| !! | TATCCATTAACAATTATAAA+CGG | - | chr8_4:23007907-23007926 | None:intergenic | 15.0% |
| !! | TCATTATATATAATCAATGA+TGG | + | chr8_4:23007947-23007966 | Msa1319600:intron | 15.0% |
| !! | CATTATATATAATCAATGAT+GGG | + | chr8_4:23007948-23007967 | Msa1319600:intron | 15.0% |
| !! | ATTATATATAATCAATGATG+GGG | + | chr8_4:23007949-23007968 | Msa1319600:intron | 15.0% |
| !!! | AAATTTTGTTTGGATTATAA+AGG | - | chr8_4:23007996-23008015 | None:intergenic | 15.0% |
| !! | CATTAAATTTATATACCAAA+GGG | - | chr8_4:23008187-23008206 | None:intergenic | 15.0% |
| !! | ATATACTTTATAAATTCACA+TGG | - | chr8_4:23008584-23008603 | None:intergenic | 15.0% |
| !! | AAAACAATGTAAGATAATAA+GGG | - | chr8_4:23008735-23008754 | None:intergenic | 15.0% |
| !! | TATATTAATCTAATCCATTT+GGG | - | chr8_4:23009211-23009230 | None:intergenic | 15.0% |
| !! | TTATATTAATCTAATCCATT+TGG | - | chr8_4:23009212-23009231 | None:intergenic | 15.0% |
| !! | GGATTAGATTAATATAAAAA+TGG | + | chr8_4:23009215-23009234 | Msa1319600:intron | 15.0% |
| !! | TTAGATTAATATAAAAATGG+TGG | + | chr8_4:23009218-23009237 | Msa1319600:intron | 15.0% |
| !! | ATTAAAAAATTATTGCACTA+AGG | + | chr8_4:23009331-23009350 | Msa1319600:intron | 15.0% |
| !! | ATGTGTTAAATGAAATTTAG+AGG | + | chr8_4:23007573-23007592 | Msa1319600:intron | 20.0% |
| !! | ATTAACAATTATAAACGGAT+GGG | - | chr8_4:23007902-23007921 | None:intergenic | 20.0% |
| !!! | TGGATTTGATAAATTTTGTT+TGG | - | chr8_4:23008006-23008025 | None:intergenic | 20.0% |
| !! | GCATTAAATTTATATACCAA+AGG | - | chr8_4:23008188-23008207 | None:intergenic | 20.0% |
| !! | ATAAGGACCTTAAATAATTT+GGG | - | chr8_4:23008216-23008235 | None:intergenic | 20.0% |
| !! | TATAAGGACCTTAAATAATT+TGG | - | chr8_4:23008217-23008236 | None:intergenic | 20.0% |
| !!! | TCCATAAATTAGTTTTAGAA+CGG | + | chr8_4:23008299-23008318 | Msa1319600:intron | 20.0% |
| !! | CAAAACAATGTAAGATAATA+AGG | - | chr8_4:23008736-23008755 | None:intergenic | 20.0% |
| !! | TTCACTAAAATTAAGAAAGT+TGG | - | chr8_4:23008866-23008885 | None:intergenic | 20.0% |
| !!! | TTTTCCCTAATTTCAAAAAA+TGG | + | chr8_4:23008993-23009012 | Msa1319600:intron | 20.0% |
| !! | TTTCCCTAATTTCAAAAAAT+GGG | + | chr8_4:23008994-23009013 | Msa1319600:intron | 20.0% |
| !!! | AAATACTATGAACATTTTCT+TGG | + | chr8_4:23009143-23009162 | Msa1319600:intron | 20.0% |
| !! | ATATTAATCTAATCCATTTG+GGG | - | chr8_4:23009210-23009229 | None:intergenic | 20.0% |
| !! | TTCTCAATATTCCTTTAATT+TGG | + | chr8_4:23009562-23009581 | Msa1319600:intron | 20.0% |
| !!! | TCTCAATATTCCTTTAATTT+GGG | + | chr8_4:23009563-23009582 | Msa1319600:intron | 20.0% |
| !! | AAAATTAGAACCCAAATTAA+AGG | - | chr8_4:23009576-23009595 | None:intergenic | 20.0% |
| !! | GTTATTAAAGCTAAGTAATA+AGG | - | chr8_4:23009797-23009816 | None:intergenic | 20.0% |
| ! | AAAGGTAAGTAATTTAGTGA+TGG | + | chr8_4:23007865-23007884 | Msa1319600:intron | 25.0% |
| ! | AAGGTAAGTAATTTAGTGAT+GGG | + | chr8_4:23007866-23007885 | Msa1319600:intron | 25.0% |
| ! | CATTAACAATTATAAACGGA+TGG | - | chr8_4:23007903-23007922 | None:intergenic | 25.0% |
| ! | CATCCGTTTATAATTGTTAA+TGG | + | chr8_4:23007901-23007920 | Msa1319600:intron | 25.0% |
| ! | CATTCAATTATACAAAAGCA+CGG | - | chr8_4:23008259-23008278 | None:intergenic | 25.0% |
| !!! | TCCGTTCTAAAACTAATTTA+TGG | - | chr8_4:23008303-23008322 | None:intergenic | 25.0% |
| ! | ATTAATTCTCACCTTAAGTA+TGG | - | chr8_4:23008460-23008479 | None:intergenic | 25.0% |
| !! | TTTTGCATACTCGTATTTAT+TGG | + | chr8_4:23008508-23008527 | Msa1319600:intron | 25.0% |
| ! | GAATCTCATGTAAATTTAGT+GGG | - | chr8_4:23008544-23008563 | None:intergenic | 25.0% |
| ! | TGAATCTCATGTAAATTTAG+TGG | - | chr8_4:23008545-23008564 | None:intergenic | 25.0% |
| !! | AATTTAGAGAGTATGTTGTT+AGG | + | chr8_4:23008621-23008640 | Msa1319600:intron | 25.0% |
| !! | ATTTAGAGAGTATGTTGTTA+GGG | + | chr8_4:23008622-23008641 | Msa1319600:intron | 25.0% |
| ! | CCTTAGTAATAATAAAAGAG+GGG | - | chr8_4:23008648-23008667 | None:intergenic | 25.0% |
| ! | GCCTTAGTAATAATAAAAGA+GGG | - | chr8_4:23008649-23008668 | None:intergenic | 25.0% |
| ! | AGCCTTAGTAATAATAAAAG+AGG | - | chr8_4:23008650-23008669 | None:intergenic | 25.0% |
| ! | ATTCAAACTCAATTAAAGCA+GGG | - | chr8_4:23008974-23008993 | None:intergenic | 25.0% |
| ! | AATTCAAACTCAATTAAAGC+AGG | - | chr8_4:23008975-23008994 | None:intergenic | 25.0% |
| !!! | GTACCCATTTTTTGAAATTA+GGG | - | chr8_4:23009000-23009019 | None:intergenic | 25.0% |
| !!! | TGTACCCATTTTTTGAAATT+AGG | - | chr8_4:23009001-23009020 | None:intergenic | 25.0% |
| ! | TCAAAAATATCTCAAGTGTA+TGG | - | chr8_4:23009117-23009136 | None:intergenic | 25.0% |
| ! | TTGTAATTGACAAATACACA+TGG | + | chr8_4:23009167-23009186 | Msa1319600:intron | 25.0% |
| ! | GGAAATTAATATCTGATAGT+AGG | + | chr8_4:23009239-23009258 | Msa1319600:intron | 25.0% |
| ! | TTAATATCTGATAGTAGGTT+AGG | + | chr8_4:23009244-23009263 | Msa1319600:intron | 25.0% |
| ! | TAATATCTGATAGTAGGTTA+GGG | + | chr8_4:23009245-23009264 | Msa1319600:intron | 25.0% |
| ! | TGTAACTATATTCAAAGACT+AGG | + | chr8_4:23009440-23009459 | Msa1319600:intron | 25.0% |
| ! | ACACATTTCAATAATAGCAA+TGG | - | chr8_4:23009498-23009517 | None:intergenic | 25.0% |
| ! | TTCCTTCATTCTTTCTTAAT+TGG | + | chr8_4:23009537-23009556 | Msa1319600:intron | 25.0% |
| ! | AACCAATTAAGAAAGAATGA+AGG | - | chr8_4:23009542-23009561 | None:intergenic | 25.0% |
| ! | TAATAGGTTGTCTTATACAA+GGG | - | chr8_4:23009709-23009728 | None:intergenic | 25.0% |
| ! | ATAATAGGTTGTCTTATACA+AGG | - | chr8_4:23009710-23009729 | None:intergenic | 25.0% |
| ! | TTGTATAAGACAACCTATTA+TGG | + | chr8_4:23009709-23009728 | Msa1319600:CDS | 25.0% |
| !! | CATAATTTTACACTTGACTA+TGG | + | chr8_4:23009942-23009961 | Msa1319600:intron | 25.0% |
| TTCTTTGCTCATGAGAAATA+TGG | - | chr8_4:23007328-23007347 | None:intergenic | 30.0% | |
| ! | TGGAAGATTCCTTTTGAATT+TGG | - | chr8_4:23007362-23007381 | None:intergenic | 30.0% |
| ATTCAAAAGGAATCTTCCAT+TGG | + | chr8_4:23007363-23007382 | Msa1319600:CDS | 30.0% | |
| ! | ATTAAAAAACCAGTTTTGCG+AGG | + | chr8_4:23007679-23007698 | Msa1319600:intron | 30.0% |
| AAGTAGGGTGAAAAAATAGA+TGG | - | chr8_4:23008026-23008045 | None:intergenic | 30.0% | |
| ATAAGGTTTCTTTATGCAAG+AGG | - | chr8_4:23008096-23008115 | None:intergenic | 30.0% | |
| TTGAAGTTTGATCTCTCATA+AGG | - | chr8_4:23008072-23008091 | None:intergenic | 30.0% | |
| GTTAGAGTAAATAATGCAAG+AGG | - | chr8_4:23008137-23008156 | None:intergenic | 30.0% | |
| GCATATGCCCAAATTATTTA+AGG | + | chr8_4:23008206-23008225 | Msa1319600:intron | 30.0% | |
| CAGAAACATTACAGAAACAT+GGG | + | chr8_4:23008357-23008376 | Msa1319600:intron | 30.0% | |
| TCAACAAATCTCCATACTTA+AGG | + | chr8_4:23008446-23008465 | Msa1319600:CDS | 30.0% | |
| ! | CCCCTCTTTTATTATTACTA+AGG | + | chr8_4:23008645-23008664 | Msa1319600:intron | 30.0% |
| CAATGTAAGATAATAAGGGA+TGG | - | chr8_4:23008731-23008750 | None:intergenic | 30.0% | |
| GTGAAAGAGATCCTATATTT+AGG | + | chr8_4:23008881-23008900 | Msa1319600:intron | 30.0% | |
| TTCAAAAAATGGGTACAAGA+CGG | + | chr8_4:23009004-23009023 | Msa1319600:intron | 30.0% | |
| TTGCATATCAATGGTTTCTA+CGG | - | chr8_4:23009072-23009091 | None:intergenic | 30.0% | |
| AAATTATTGCACTAAGGAGA+TGG | + | chr8_4:23009337-23009356 | Msa1319600:intron | 30.0% | |
| ACTATATTCAAAGACTAGGA+CGG | + | chr8_4:23009444-23009463 | Msa1319600:intron | 30.0% | |
| ACATATCAAATTGGATAAGC+GGG | - | chr8_4:23009603-23009622 | None:intergenic | 30.0% | |
| CACATATCAAATTGGATAAG+CGG | - | chr8_4:23009604-23009623 | None:intergenic | 30.0% | |
| TTATCCAATTTGATATGTGC+AGG | + | chr8_4:23009605-23009624 | Msa1319600:intron | 30.0% | |
| !!! | ATTCTTGTTTTGTTGGAGTT+GGG | - | chr8_4:23009825-23009844 | None:intergenic | 30.0% |
| TGTGATGAAGAAAAAGATGA+TGG | - | chr8_4:23009865-23009884 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCATCACATTCAG+AGG | + | chr8_4:23009870-23009889 | Msa1319600:CDS | 30.0% |
| ATCAACCTTAGATGATACTA+AGG | + | chr8_4:23009915-23009934 | Msa1319600:CDS | 30.0% | |
| ! | GATTTCTTTCAACCTTTTGA+TGG | + | chr8_4:23010017-23010036 | Msa1319600:CDS | 30.0% |
| ! | GAAGTATCACATAAAGGCAA+TGG | + | chr8_4:23007164-23007183 | Msa1319600:CDS | 35.0% |
| ! | CCTTTTGAATTTGGTCACTA+GGG | - | chr8_4:23007353-23007372 | None:intergenic | 35.0% |
| ! | TCCTTTTGAATTTGGTCACT+AGG | - | chr8_4:23007354-23007373 | None:intergenic | 35.0% |
| CTAGAGGATGTAACAAAAGA+AGG | + | chr8_4:23007439-23007458 | Msa1319600:CDS | 35.0% | |
| ATTTCTTTACCTCGCAAAAC+TGG | - | chr8_4:23007691-23007710 | None:intergenic | 35.0% | |
| ! | AGCAAATTCTAGCTGAAGTA+GGG | - | chr8_4:23008041-23008060 | None:intergenic | 35.0% |
| ! | GTTTCTGTAATGTTTCTGCA+TGG | - | chr8_4:23008355-23008374 | None:intergenic | 35.0% |
| GCAGAAACATTACAGAAACA+TGG | + | chr8_4:23008356-23008375 | Msa1319600:intron | 35.0% | |
| AAACTCCAACAGATGATGAT+GGG | + | chr8_4:23008392-23008411 | Msa1319600:CDS | 35.0% | |
| GAGATCCTATATTTAGGAGT+AGG | + | chr8_4:23008887-23008906 | Msa1319600:intron | 35.0% | |
| CCATACCTACTCCTAAATAT+AGG | - | chr8_4:23008895-23008914 | None:intergenic | 35.0% | |
| CCTATATTTAGGAGTAGGTA+TGG | + | chr8_4:23008892-23008911 | Msa1319600:intron | 35.0% | |
| AAAACTCGTTAAATTGGGGT+GGG | - | chr8_4:23008951-23008970 | None:intergenic | 35.0% | |
| AGGGAAAACTCGTTAAATTG+GGG | - | chr8_4:23008955-23008974 | None:intergenic | 35.0% | |
| CAGGGAAAACTCGTTAAATT+GGG | - | chr8_4:23008956-23008975 | None:intergenic | 35.0% | |
| TCAAAAAATGGGTACAAGAC+GGG | + | chr8_4:23009005-23009024 | Msa1319600:intron | 35.0% | |
| ATATCAATGGTTTCTACGGT+CGG | - | chr8_4:23009068-23009087 | None:intergenic | 35.0% | |
| AGTGTATGGATGACATGTAA+AGG | - | chr8_4:23009103-23009122 | None:intergenic | 35.0% | |
| ! | TCATGTTTTTCTACCCCAAA+TGG | + | chr8_4:23009194-23009213 | Msa1319600:intron | 35.0% |
| !! | TAGGGTTTGGGTTATGATTT+TGG | + | chr8_4:23009263-23009282 | Msa1319600:intron | 35.0% |
| !! | AGGGTTTGGGTTATGATTTT+GGG | + | chr8_4:23009264-23009283 | Msa1319600:intron | 35.0% |
| TTGGGAAAAATTCTGTGTCT+AGG | + | chr8_4:23009282-23009301 | Msa1319600:intron | 35.0% | |
| TGGGAAAAATTCTGTGTCTA+GGG | + | chr8_4:23009283-23009302 | Msa1319600:intron | 35.0% | |
| TTATCCTACTCGATTTCTGA+TGG | - | chr8_4:23009418-23009437 | None:intergenic | 35.0% | |
| TCAATAATAGCAATGGAGCT+GGG | - | chr8_4:23009491-23009510 | None:intergenic | 35.0% | |
| TTCAATAATAGCAATGGAGC+TGG | - | chr8_4:23009492-23009511 | None:intergenic | 35.0% | |
| AGTTCCTGCACATATCAAAT+TGG | - | chr8_4:23009612-23009631 | None:intergenic | 35.0% | |
| TTGAATTCTATGCACATGCT+TGG | - | chr8_4:23009677-23009696 | None:intergenic | 35.0% | |
| TAGGATCAAGTATGTTGTCA+GGG | - | chr8_4:23009762-23009781 | None:intergenic | 35.0% | |
| TTAGGATCAAGTATGTTGTC+AGG | - | chr8_4:23009763-23009782 | None:intergenic | 35.0% | |
| !! | AATAAGGAAGAAGCGTCATT+AGG | - | chr8_4:23009781-23009800 | None:intergenic | 35.0% |
| !!! | CATTCTTGTTTTGTTGGAGT+TGG | - | chr8_4:23009826-23009845 | None:intergenic | 35.0% |
| !!! | AAGGGACATTCTTGTTTTGT+TGG | - | chr8_4:23009832-23009851 | None:intergenic | 35.0% |
| ! | GATGATGGTGATGACAAAAA+GGG | - | chr8_4:23009850-23009869 | None:intergenic | 35.0% |
| ! | AGATGATGGTGATGACAAAA+AGG | - | chr8_4:23009851-23009870 | None:intergenic | 35.0% |
| !! | GTATCATCTAAGGTTGATGA+AGG | - | chr8_4:23009913-23009932 | None:intergenic | 35.0% |
| GTCAACCTTAGTATCATCTA+AGG | - | chr8_4:23009923-23009942 | None:intergenic | 35.0% | |
| TCACATAAAGGCAATGGAAG+AGG | + | chr8_4:23007170-23007189 | Msa1319600:CDS | 40.0% | |
| CAATGGAAGAGGTTATGAGA+GGG | + | chr8_4:23007181-23007200 | Msa1319600:CDS | 40.0% | |
| CCCTAGTGACCAAATTCAAA+AGG | + | chr8_4:23007350-23007369 | Msa1319600:CDS | 40.0% | |
| AGATCTAACTACTGGACCAA+TGG | - | chr8_4:23007382-23007401 | None:intergenic | 40.0% | |
| AAGTCGACAGATCTAACTAC+TGG | - | chr8_4:23007390-23007409 | None:intergenic | 40.0% | |
| !! | AAGAGTACTTCTGCATCTAG+AGG | + | chr8_4:23007423-23007442 | Msa1319600:CDS | 40.0% |
| !! | GTAATTTAGTGATGGGTGTC+TGG | + | chr8_4:23007873-23007892 | Msa1319600:intron | 40.0% |
| ! | GAGCAAATTCTAGCTGAAGT+AGG | - | chr8_4:23008042-23008061 | None:intergenic | 40.0% |
| ATCGCTACATCAACATGAGT+TGG | - | chr8_4:23008159-23008178 | None:intergenic | 40.0% | |
| CATTACAGAAACATGGGAGA+AGG | + | chr8_4:23008363-23008382 | Msa1319600:CDS | 40.0% | |
| GAAACTCCAACAGATGATGA+TGG | + | chr8_4:23008391-23008410 | Msa1319600:CDS | 40.0% | |
| GGGCATCAATGGAGAAAATA+TGG | + | chr8_4:23008412-23008431 | Msa1319600:CDS | 40.0% | |
| TGGAAAAATACCCGTATCCA+CGG | + | chr8_4:23008912-23008931 | Msa1319600:intron | 40.0% | |
| GAAAACTCGTTAAATTGGGG+TGG | - | chr8_4:23008952-23008971 | None:intergenic | 40.0% | |
| GCAGGGAAAACTCGTTAAAT+TGG | - | chr8_4:23008957-23008976 | None:intergenic | 40.0% | |
| TATCAATGGTTTCTACGGTC+GGG | - | chr8_4:23009067-23009086 | None:intergenic | 40.0% | |
| GCTAGCATGTTGCATATCAA+TGG | - | chr8_4:23009081-23009100 | None:intergenic | 40.0% | |
| TCTGATAGTAGGTTAGGGTT+TGG | + | chr8_4:23009250-23009269 | Msa1319600:intron | 40.0% | |
| CTGATAGTAGGTTAGGGTTT+GGG | + | chr8_4:23009251-23009270 | Msa1319600:intron | 40.0% | |
| ATATGTGCAGGAACTACTAC+AGG | + | chr8_4:23009617-23009636 | Msa1319600:intron | 40.0% | |
| TATGCACATGCTTGGTTGTT+AGG | - | chr8_4:23009669-23009688 | None:intergenic | 40.0% | |
| TAGGTTGTCTTATACAAGGG+AGG | - | chr8_4:23009706-23009725 | None:intergenic | 40.0% | |
| ACAAGTGTGGTGACCATAAT+AGG | - | chr8_4:23009725-23009744 | None:intergenic | 40.0% | |
| TATTATGGTCACCACACTTG+TGG | + | chr8_4:23009724-23009743 | Msa1319600:CDS | 40.0% | |
| ATCAAGTATGTTGTCAGGGT+TGG | - | chr8_4:23009758-23009777 | None:intergenic | 40.0% | |
| GCAATGGAAGAGGTTATGAG+AGG | + | chr8_4:23007180-23007199 | Msa1319600:CDS | 45.0% | |
| TGATGCCCATCATCATCTGT+TGG | - | chr8_4:23008400-23008419 | None:intergenic | 45.0% | |
| !! | CAGATGATGATGGGCATCAA+TGG | + | chr8_4:23008401-23008420 | Msa1319600:CDS | 45.0% |
| !! | TAAATTGGGGTGGGTTTTGG+CGG | - | chr8_4:23008942-23008961 | None:intergenic | 45.0% |
| !! | CGTTAAATTGGGGTGGGTTT+TGG | - | chr8_4:23008945-23008964 | None:intergenic | 45.0% |
| ACGGGTAACATGGATATAGC+TGG | + | chr8_4:23009023-23009042 | Msa1319600:intron | 45.0% | |
| ATCAATGGTTTCTACGGTCG+GGG | - | chr8_4:23009066-23009085 | None:intergenic | 45.0% | |
| CTAAGGAGATGGAGACTATG+AGG | + | chr8_4:23009348-23009367 | Msa1319600:intron | 45.0% | |
| GGAGATTCCTTGAAACACGT+TGG | + | chr8_4:23009369-23009388 | Msa1319600:intron | 45.0% | |
| TCCTTGAAACACGTTGGAGA+CGG | + | chr8_4:23009375-23009394 | Msa1319600:intron | 45.0% | |
| ACCTCCATCAGAAATCGAGT+AGG | + | chr8_4:23009411-23009430 | Msa1319600:intron | 45.0% | |
| TCCTACTCGATTTCTGATGG+AGG | - | chr8_4:23009415-23009434 | None:intergenic | 45.0% | |
| ATAATAGCAATGGAGCTGGG+CGG | - | chr8_4:23009488-23009507 | None:intergenic | 45.0% | |
| TGGACAAGTTTCCACAAGTG+TGG | - | chr8_4:23009738-23009757 | None:intergenic | 45.0% | |
| !!! | TGAATAATTATTATTTTTTT+TGG | + | chr8_4:23007839-23007858 | Msa1319600:intron | 5.0% |
| !! | AAAATATAAATATATGTATA+AGG | - | chr8_4:23008233-23008252 | None:intergenic | 5.0% |
| !!! | TATACATATATTTATATTTT+AGG | + | chr8_4:23008233-23008252 | Msa1319600:intron | 5.0% |
| ATGTAGCGATTGCGTCCCTT+TGG | + | chr8_4:23008169-23008188 | Msa1319600:intron | 50.0% | |
| TTGGCGGTTATCCGTGGATA+CGG | - | chr8_4:23008926-23008945 | None:intergenic | 50.0% | |
| TGGGTACAAGACGGGTAACA+TGG | + | chr8_4:23009013-23009032 | Msa1319600:intron | 50.0% | |
| CCTTGAAACACGTTGGAGAC+GGG | + | chr8_4:23009376-23009395 | Msa1319600:intron | 50.0% | |
| CTTGAAACACGTTGGAGACG+GGG | + | chr8_4:23009377-23009396 | Msa1319600:intron | 50.0% | |
| TAATAGCAATGGAGCTGGGC+GGG | - | chr8_4:23009487-23009506 | None:intergenic | 50.0% | |
| TGGCGGTTATCCGTGGATAC+GGG | - | chr8_4:23008925-23008944 | None:intergenic | 55.0% | |
| !! | TGGGTTTTGGCGGTTATCCG+TGG | - | chr8_4:23008932-23008951 | None:intergenic | 55.0% |
| ! | TCTGTGTCTAGGGCGAGAAC+TGG | + | chr8_4:23009293-23009312 | Msa1319600:intron | 55.0% |
| CCCGTCTCCAACGTGTTTCA+AGG | - | chr8_4:23009379-23009398 | None:intergenic | 55.0% | |
| !! | GGTCGGGGCTGGTTTAGTGT+GGG | - | chr8_4:23009051-23009070 | None:intergenic | 60.0% |
| ATGGTTTCTACGGTCGGGGC+TGG | - | chr8_4:23009062-23009081 | None:intergenic | 60.0% | |
| !! | CGGTCGGGGCTGGTTTAGTG+TGG | - | chr8_4:23009052-23009071 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 23007159 | 23010046 | 23007159 | ID=Msa1319600;Name=Msa1319600 |
| chr8_4 | mRNA | 23007159 | 23010046 | 23007159 | ID=Msa1319600-mRNA-1;Parent=Msa1319600;Name=Msa1319600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|4|0|252 |
| chr8_4 | exon | 23007159 | 23007460 | 23007159 | ID=Msa1319600-mRNA-1:exon:8103;Parent=Msa1319600-mRNA-1 |
| chr8_4 | exon | 23008360 | 23008467 | 23008360 | ID=Msa1319600-mRNA-1:exon:8104;Parent=Msa1319600-mRNA-1 |
| chr8_4 | exon | 23009627 | 23009936 | 23009627 | ID=Msa1319600-mRNA-1:exon:8105;Parent=Msa1319600-mRNA-1 |
| chr8_4 | exon | 23010008 | 23010046 | 23010008 | ID=Msa1319600-mRNA-1:exon:8106;Parent=Msa1319600-mRNA-1 |
| chr8_4 | CDS | 23007159 | 23007460 | 23007159 | ID=Msa1319600-mRNA-1:cds;Parent=Msa1319600-mRNA-1 |
| chr8_4 | CDS | 23008360 | 23008467 | 23008360 | ID=Msa1319600-mRNA-1:cds;Parent=Msa1319600-mRNA-1 |
| chr8_4 | CDS | 23009627 | 23009936 | 23009627 | ID=Msa1319600-mRNA-1:cds;Parent=Msa1319600-mRNA-1 |
| chr8_4 | CDS | 23010008 | 23010046 | 23010008 | ID=Msa1319600-mRNA-1:cds;Parent=Msa1319600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
