Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319940 | RDX68490.1 | 89.394 | 66 | 7 | 0 | 6 | 71 | 15 | 80 | 2.72e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319940 | sp|Q38838|AGL14_ARATH | 92.063 | 63 | 5 | 0 | 11 | 73 | 1 | 63 | 9.76e-36 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319940 | A0A371ER05 | 89.394 | 66 | 7 | 0 | 6 | 71 | 15 | 80 | 1.30e-35 | 126 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1319940 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319940 | MtrunA17_Chr8g0351041 | 100.000 | 60 | 0 | 0 | 11 | 70 | 1 | 60 | 2.03e-38 | 125 |
| Msa1319940 | MtrunA17_Chr8g0351031 | 98.333 | 60 | 1 | 0 | 11 | 70 | 1 | 60 | 3.12e-37 | 124 |
| Msa1319940 | MtrunA17_Chr7g0246431 | 95.000 | 60 | 3 | 0 | 11 | 70 | 1 | 60 | 8.05e-37 | 122 |
| Msa1319940 | MtrunA17_Chr4g0057151 | 78.378 | 74 | 15 | 1 | 11 | 84 | 1 | 73 | 8.82e-33 | 112 |
| Msa1319940 | MtrunA17_Chr3g0097101 | 76.190 | 63 | 15 | 0 | 8 | 70 | 13 | 75 | 3.77e-29 | 103 |
| Msa1319940 | MtrunA17_Chr7g0246381 | 75.806 | 62 | 15 | 0 | 11 | 72 | 1 | 62 | 8.88e-29 | 98.2 |
| Msa1319940 | MtrunA17_Chr3g0077501 | 78.333 | 60 | 13 | 0 | 11 | 70 | 1 | 60 | 1.43e-28 | 102 |
| Msa1319940 | MtrunA17_Chr2g0284911 | 71.642 | 67 | 19 | 0 | 4 | 70 | 9 | 75 | 1.47e-28 | 102 |
| Msa1319940 | MtrunA17_Chr8g0380021 | 78.689 | 61 | 13 | 0 | 10 | 70 | 16 | 76 | 1.82e-28 | 102 |
| Msa1319940 | MtrunA17_Chr6g0455511 | 74.603 | 63 | 16 | 0 | 11 | 73 | 1 | 63 | 9.97e-28 | 100 |
| Msa1319940 | MtrunA17_Chr3g0122251 | 74.603 | 63 | 16 | 0 | 11 | 73 | 1 | 63 | 1.24e-27 | 100 |
| Msa1319940 | MtrunA17_Chr5g0420091 | 70.312 | 64 | 19 | 0 | 11 | 74 | 1 | 64 | 1.50e-27 | 99.4 |
| Msa1319940 | MtrunA17_Chr4g0061671 | 73.333 | 60 | 16 | 0 | 11 | 70 | 1 | 60 | 1.61e-27 | 98.6 |
| Msa1319940 | MtrunA17_Chr8g0377561 | 75.862 | 58 | 14 | 0 | 11 | 68 | 1 | 58 | 2.55e-27 | 95.5 |
| Msa1319940 | MtrunA17_Chr7g0220111 | 71.429 | 63 | 18 | 0 | 11 | 73 | 1 | 63 | 3.38e-27 | 99.4 |
| Msa1319940 | MtrunA17_Chr8g0351051 | 77.966 | 59 | 13 | 0 | 11 | 69 | 1 | 59 | 3.59e-27 | 99.4 |
| Msa1319940 | MtrunA17_Chr2g0308251 | 64.474 | 76 | 26 | 1 | 11 | 86 | 1 | 75 | 4.40e-27 | 94.4 |
| Msa1319940 | MtrunA17_Chr5g0427921 | 68.852 | 61 | 19 | 0 | 11 | 71 | 1 | 61 | 7.41e-27 | 93.2 |
| Msa1319940 | MtrunA17_Chr1g0173161 | 72.131 | 61 | 17 | 0 | 11 | 71 | 1 | 61 | 1.16e-26 | 93.2 |
| Msa1319940 | MtrunA17_Chr2g0279821 | 71.667 | 60 | 17 | 0 | 11 | 70 | 1 | 60 | 2.69e-25 | 94.0 |
| Msa1319940 | MtrunA17_Chr4g0020221 | 73.333 | 60 | 16 | 0 | 11 | 70 | 1 | 60 | 4.75e-25 | 94.0 |
| Msa1319940 | MtrunA17_Chr6g0474371 | 62.857 | 70 | 26 | 0 | 11 | 80 | 1 | 70 | 6.60e-25 | 92.0 |
| Msa1319940 | MtrunA17_Chr8g0366231 | 71.667 | 60 | 17 | 0 | 11 | 70 | 1 | 60 | 1.18e-24 | 92.4 |
| Msa1319940 | MtrunA17_Chr4g0061691 | 70.000 | 60 | 18 | 0 | 11 | 70 | 1 | 60 | 2.38e-24 | 91.3 |
| Msa1319940 | MtrunA17_Chr1g0204111 | 63.768 | 69 | 24 | 1 | 3 | 70 | 8 | 76 | 6.38e-24 | 90.9 |
| Msa1319940 | MtrunA17_Chr5g0425191 | 55.682 | 88 | 26 | 2 | 11 | 85 | 1 | 88 | 7.53e-24 | 86.7 |
| Msa1319940 | MtrunA17_Chr7g0220121 | 65.152 | 66 | 23 | 0 | 11 | 76 | 1 | 66 | 1.09e-23 | 90.1 |
| Msa1319940 | MtrunA17_Chr3g0134451 | 63.014 | 73 | 27 | 0 | 11 | 83 | 1 | 73 | 1.31e-23 | 91.3 |
| Msa1319940 | MtrunA17_Chr4g0018421 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 1.45e-23 | 88.6 |
| Msa1319940 | MtrunA17_Chr5g0427401 | 65.574 | 61 | 21 | 0 | 11 | 71 | 1 | 61 | 2.56e-23 | 88.6 |
| Msa1319940 | MtrunA17_Chr3g0142191 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 3.21e-23 | 88.6 |
| Msa1319940 | MtrunA17_Chr5g0412271 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 3.43e-23 | 88.2 |
| Msa1319940 | MtrunA17_Chr5g0412461 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 4.35e-23 | 88.2 |
| Msa1319940 | MtrunA17_Chr4g0044071 | 62.295 | 61 | 23 | 0 | 11 | 71 | 1 | 61 | 5.79e-23 | 84.7 |
| Msa1319940 | MtrunA17_Chr4g0049541 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 1.76e-22 | 86.3 |
| Msa1319940 | MtrunA17_Chr5g0420081 | 65.000 | 60 | 21 | 0 | 11 | 70 | 1 | 60 | 4.17e-22 | 85.9 |
| Msa1319940 | MtrunA17_Chr5g0411691 | 63.333 | 60 | 22 | 0 | 11 | 70 | 1 | 60 | 5.42e-22 | 85.5 |
| Msa1319940 | MtrunA17_Chr3g0125241 | 61.017 | 59 | 23 | 0 | 11 | 69 | 26 | 84 | 8.07e-22 | 84.3 |
| Msa1319940 | MtrunA17_Chr4g0049901 | 65.000 | 60 | 21 | 0 | 11 | 70 | 27 | 86 | 1.94e-21 | 84.0 |
| Msa1319940 | MtrunA17_Chr1g0159661 | 55.932 | 59 | 26 | 0 | 11 | 69 | 1 | 59 | 5.24e-21 | 81.6 |
| Msa1319940 | MtrunA17_Chr5g0404951 | 61.017 | 59 | 23 | 0 | 11 | 69 | 1 | 59 | 1.86e-20 | 81.3 |
| Msa1319940 | MtrunA17_Chr1g0166611 | 61.290 | 62 | 24 | 0 | 23 | 84 | 17 | 78 | 3.26e-20 | 78.6 |
| Msa1319940 | MtrunA17_Chr1g0164791 | 58.065 | 62 | 26 | 0 | 11 | 72 | 1 | 62 | 3.57e-20 | 80.5 |
| Msa1319940 | MtrunA17_Chr1g0175611 | 49.315 | 73 | 36 | 1 | 11 | 83 | 1 | 72 | 2.84e-18 | 74.3 |
| Msa1319940 | MtrunA17_Chr8g0379021 | 43.590 | 78 | 44 | 0 | 7 | 84 | 7 | 84 | 1.27e-17 | 72.8 |
| Msa1319940 | MtrunA17_Chr1g0180591 | 46.575 | 73 | 38 | 1 | 11 | 83 | 1 | 72 | 2.30e-17 | 72.0 |
| Msa1319940 | MtrunA17_Chr8g0376821 | 49.296 | 71 | 35 | 1 | 11 | 81 | 1 | 70 | 3.02e-17 | 72.0 |
| Msa1319940 | MtrunA17_Chr1g0169761 | 49.296 | 71 | 35 | 1 | 11 | 81 | 1 | 70 | 4.51e-17 | 71.2 |
| Msa1319940 | MtrunA17_Chr1g0208581 | 54.237 | 59 | 27 | 0 | 13 | 71 | 10 | 68 | 5.57e-17 | 72.0 |
| Msa1319940 | MtrunA17_Chr2g0333981 | 47.222 | 72 | 38 | 0 | 1 | 72 | 1 | 72 | 9.10e-17 | 70.5 |
| Msa1319940 | MtrunA17_Chr2g0292791 | 60.000 | 55 | 22 | 0 | 13 | 67 | 10 | 64 | 1.28e-16 | 71.2 |
| Msa1319940 | MtrunA17_Chr4g0074101 | 47.887 | 71 | 36 | 1 | 11 | 81 | 1 | 70 | 1.83e-16 | 70.1 |
| Msa1319940 | MtrunA17_Chr1g0175601 | 46.575 | 73 | 38 | 1 | 11 | 83 | 1 | 72 | 2.49e-16 | 69.7 |
| Msa1319940 | MtrunA17_Chr1g0208561 | 52.542 | 59 | 28 | 0 | 13 | 71 | 10 | 68 | 4.23e-16 | 69.7 |
| Msa1319940 | MtrunA17_Chr3g0089141 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 4.75e-16 | 69.7 |
| Msa1319940 | MtrunA17_Chr5g0417661 | 52.830 | 53 | 25 | 0 | 11 | 63 | 56 | 108 | 1.24e-15 | 66.6 |
| Msa1319940 | MtrunA17_Chr1g0188671 | 52.459 | 61 | 29 | 0 | 8 | 68 | 43 | 103 | 1.33e-15 | 68.9 |
| Msa1319940 | MtrunA17_Chr4g0018951 | 68.182 | 44 | 14 | 0 | 24 | 67 | 24 | 67 | 1.81e-15 | 67.0 |
| Msa1319940 | MtrunA17_Chr3g0099411 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 3.98e-15 | 67.0 |
| Msa1319940 | MtrunA17_Chr1g0149391 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 5.11e-15 | 67.0 |
| Msa1319940 | MtrunA17_Chr3g0099421 | 54.237 | 59 | 27 | 0 | 13 | 71 | 35 | 93 | 5.24e-15 | 67.4 |
| Msa1319940 | MtrunA17_Chr8g0355091 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 5.27e-15 | 67.0 |
| Msa1319940 | MtrunA17_Chr1g0206721 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 5.38e-15 | 67.0 |
| Msa1319940 | MtrunA17_Chr1g0206701 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 6.22e-15 | 67.0 |
| Msa1319940 | MtrunA17_Chr1g0187361 | 55.357 | 56 | 25 | 0 | 13 | 68 | 10 | 65 | 6.76e-15 | 66.6 |
| Msa1319940 | MtrunA17_Chr8g0357771 | 54.386 | 57 | 26 | 0 | 11 | 67 | 1 | 57 | 7.75e-15 | 65.9 |
| Msa1319940 | MtrunA17_Chr5g0422421 | 57.143 | 56 | 24 | 0 | 13 | 68 | 10 | 65 | 7.82e-15 | 66.6 |
| Msa1319940 | MtrunA17_Chr5g0419601 | 50.000 | 64 | 32 | 0 | 8 | 71 | 5 | 68 | 1.09e-14 | 66.2 |
| Msa1319940 | MtrunA17_Chr2g0300421 | 44.444 | 72 | 39 | 1 | 13 | 84 | 10 | 80 | 1.21e-14 | 65.1 |
| Msa1319940 | MtrunA17_Chr4g0052081 | 47.541 | 61 | 32 | 0 | 11 | 71 | 1 | 61 | 1.92e-14 | 64.7 |
| Msa1319940 | MtrunA17_Chr2g0325971 | 50.847 | 59 | 29 | 0 | 13 | 71 | 10 | 68 | 2.58e-14 | 65.1 |
| Msa1319940 | MtrunA17_Chr2g0317481 | 53.571 | 56 | 26 | 0 | 13 | 68 | 10 | 65 | 2.67e-14 | 65.1 |
| Msa1319940 | MtrunA17_Chr2g0317451 | 53.571 | 56 | 26 | 0 | 13 | 68 | 10 | 65 | 2.67e-14 | 65.1 |
| Msa1319940 | MtrunA17_Chr4g0060841 | 46.774 | 62 | 33 | 0 | 11 | 72 | 1 | 62 | 2.80e-14 | 65.9 |
| Msa1319940 | MtrunA17_Chr4g0052061 | 47.458 | 59 | 31 | 0 | 11 | 69 | 1 | 59 | 3.74e-14 | 63.5 |
| Msa1319940 | MtrunA17_Chr1g0206991 | 51.786 | 56 | 27 | 0 | 13 | 68 | 10 | 65 | 5.37e-14 | 63.5 |
| Msa1319940 | MtrunA17_Chr3g0111841 | 52.941 | 51 | 24 | 0 | 18 | 68 | 2 | 52 | 6.32e-14 | 60.8 |
| Msa1319940 | MtrunA17_Chr5g0422941 | 53.571 | 56 | 26 | 0 | 13 | 68 | 10 | 65 | 1.16e-13 | 63.5 |
| Msa1319940 | MtrunA17_Chr4g0071601 | 43.590 | 78 | 44 | 0 | 1 | 78 | 1 | 78 | 1.79e-13 | 62.4 |
| Msa1319940 | MtrunA17_Chr6g0457851 | 50.000 | 52 | 26 | 0 | 9 | 60 | 9 | 60 | 7.30e-13 | 62.0 |
| Msa1319940 | MtrunA17_Chr3g0119901 | 46.032 | 63 | 34 | 0 | 6 | 68 | 3 | 65 | 1.03e-12 | 60.5 |
| Msa1319940 | MtrunA17_Chr3g0089151 | 48.214 | 56 | 29 | 0 | 13 | 68 | 10 | 65 | 2.16e-12 | 58.2 |
| Msa1319940 | MtrunA17_Chr8g0356071 | 40.845 | 71 | 41 | 1 | 11 | 81 | 1 | 70 | 2.19e-12 | 58.9 |
| Msa1319940 | MtrunA17_Chr1g0187351 | 55.319 | 47 | 21 | 0 | 21 | 67 | 1 | 47 | 2.34e-12 | 56.6 |
| Msa1319940 | MtrunA17_Chr3g0085241 | 45.161 | 62 | 34 | 0 | 7 | 68 | 36 | 97 | 2.71e-12 | 60.1 |
| Msa1319940 | MtrunA17_Chr2g0300441 | 47.368 | 57 | 30 | 0 | 15 | 71 | 12 | 68 | 3.03e-12 | 59.7 |
| Msa1319940 | MtrunA17_Chr1g0206691 | 54.167 | 48 | 22 | 0 | 21 | 68 | 1 | 48 | 9.04e-12 | 58.2 |
| Msa1319940 | MtrunA17_Chr6g0449851 | 48.000 | 50 | 26 | 0 | 11 | 60 | 1 | 50 | 4.84e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319940 | AT4G11880.2 | 92.063 | 63 | 5 | 0 | 11 | 73 | 1 | 63 | 3.04e-37 | 123 |
| Msa1319940 | AT4G11880.3 | 92.063 | 63 | 5 | 0 | 11 | 73 | 1 | 63 | 3.04e-37 | 123 |
| Msa1319940 | AT4G11880.4 | 92.063 | 63 | 5 | 0 | 11 | 73 | 1 | 63 | 9.93e-37 | 123 |
| Msa1319940 | AT4G11880.1 | 92.063 | 63 | 5 | 0 | 11 | 73 | 1 | 63 | 9.93e-37 | 123 |
| Msa1319940 | AT2G45660.2 | 93.333 | 60 | 4 | 0 | 11 | 70 | 1 | 60 | 1.10e-36 | 121 |
| Msa1319940 | AT2G45660.1 | 93.333 | 60 | 4 | 0 | 11 | 70 | 1 | 60 | 5.71e-36 | 121 |
| Msa1319940 | AT4G22950.2 | 90.000 | 60 | 6 | 0 | 11 | 70 | 1 | 60 | 2.96e-35 | 118 |
| Msa1319940 | AT4G22950.3 | 90.000 | 60 | 6 | 0 | 11 | 70 | 1 | 60 | 2.04e-34 | 117 |
| Msa1319940 | AT4G22950.1 | 90.000 | 60 | 6 | 0 | 11 | 70 | 1 | 60 | 2.04e-34 | 117 |
| Msa1319940 | AT5G62165.6 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.47e-32 | 110 |
| Msa1319940 | AT5G62165.9 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.47e-32 | 110 |
| Msa1319940 | AT5G62165.7 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.47e-32 | 110 |
| Msa1319940 | AT5G62165.8 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.47e-32 | 110 |
| Msa1319940 | AT5G62165.13 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.47e-32 | 110 |
| Msa1319940 | AT5G62165.17 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.84e-32 | 110 |
| Msa1319940 | AT5G62165.12 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.84e-32 | 110 |
| Msa1319940 | AT5G62165.11 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.84e-32 | 110 |
| Msa1319940 | AT5G62165.14 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 2.14e-32 | 108 |
| Msa1319940 | AT5G62165.10 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 9.24e-32 | 110 |
| Msa1319940 | AT5G62165.4 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 9.24e-32 | 110 |
| Msa1319940 | AT5G62165.3 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.08e-31 | 110 |
| Msa1319940 | AT5G62165.1 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.08e-31 | 110 |
| Msa1319940 | AT5G62165.2 | 83.333 | 60 | 10 | 0 | 11 | 70 | 1 | 60 | 1.08e-31 | 110 |
| Msa1319940 | AT4G09960.2 | 80.000 | 60 | 12 | 0 | 11 | 70 | 1 | 60 | 1.90e-29 | 104 |
| Msa1319940 | AT4G09960.1 | 80.000 | 60 | 12 | 0 | 11 | 70 | 1 | 60 | 2.51e-29 | 104 |
| Msa1319940 | AT4G09960.6 | 80.000 | 60 | 12 | 0 | 11 | 70 | 2 | 61 | 2.54e-29 | 104 |
| Msa1319940 | AT4G09960.5 | 80.000 | 60 | 12 | 0 | 11 | 70 | 11 | 70 | 3.49e-29 | 104 |
| Msa1319940 | AT4G09960.3 | 78.689 | 61 | 13 | 0 | 10 | 70 | 26 | 86 | 4.50e-29 | 104 |
| Msa1319940 | AT3G58780.2 | 75.806 | 62 | 15 | 0 | 10 | 71 | 15 | 76 | 5.98e-29 | 103 |
| Msa1319940 | AT4G09960.4 | 78.689 | 61 | 13 | 0 | 10 | 70 | 95 | 155 | 1.47e-28 | 104 |
| Msa1319940 | AT2G42830.1 | 71.642 | 67 | 19 | 0 | 10 | 76 | 15 | 81 | 1.75e-28 | 102 |
| Msa1319940 | AT3G58780.1 | 71.642 | 67 | 19 | 0 | 10 | 76 | 15 | 81 | 1.86e-28 | 102 |
| Msa1319940 | AT2G42830.2 | 71.642 | 67 | 19 | 0 | 10 | 76 | 15 | 81 | 1.94e-28 | 102 |
| Msa1319940 | AT3G58780.5 | 71.642 | 67 | 19 | 0 | 10 | 76 | 21 | 87 | 2.08e-28 | 102 |
| Msa1319940 | AT3G58780.4 | 68.000 | 75 | 23 | 1 | 2 | 76 | 8 | 81 | 3.72e-28 | 102 |
| Msa1319940 | AT2G03710.3 | 74.194 | 62 | 16 | 0 | 11 | 72 | 1 | 62 | 5.46e-28 | 100 |
| Msa1319940 | AT4G18960.1 | 73.134 | 67 | 18 | 0 | 10 | 76 | 16 | 82 | 5.90e-28 | 101 |
| Msa1319940 | AT3G58780.3 | 75.410 | 61 | 15 | 0 | 10 | 70 | 15 | 75 | 6.89e-28 | 102 |
| Msa1319940 | AT1G24260.3 | 74.603 | 63 | 16 | 0 | 11 | 73 | 1 | 63 | 1.05e-27 | 100 |
| Msa1319940 | AT2G45650.1 | 79.661 | 59 | 12 | 0 | 11 | 69 | 1 | 59 | 1.56e-27 | 100 |
| Msa1319940 | AT1G24260.2 | 74.603 | 63 | 16 | 0 | 11 | 73 | 1 | 63 | 1.56e-27 | 100 |
| Msa1319940 | AT1G24260.1 | 74.603 | 63 | 16 | 0 | 11 | 73 | 1 | 63 | 1.62e-27 | 100 |
| Msa1319940 | AT5G15800.1 | 73.016 | 63 | 17 | 0 | 11 | 73 | 1 | 63 | 1.96e-27 | 100 |
| Msa1319940 | AT2G03710.2 | 74.194 | 62 | 16 | 0 | 11 | 72 | 1 | 62 | 2.40e-27 | 100 |
| Msa1319940 | AT2G03710.1 | 74.194 | 62 | 16 | 0 | 11 | 72 | 1 | 62 | 2.64e-27 | 100 |
| Msa1319940 | AT5G51860.2 | 76.667 | 60 | 14 | 0 | 11 | 70 | 1 | 60 | 2.93e-27 | 98.6 |
| Msa1319940 | AT5G51860.1 | 76.667 | 60 | 14 | 0 | 11 | 70 | 1 | 60 | 3.24e-27 | 98.6 |
| Msa1319940 | AT3G02310.2 | 71.429 | 63 | 18 | 0 | 11 | 73 | 1 | 63 | 5.83e-27 | 97.8 |
| Msa1319940 | AT3G02310.1 | 71.429 | 63 | 18 | 0 | 11 | 73 | 1 | 63 | 8.13e-27 | 98.6 |
| Msa1319940 | AT5G51870.2 | 73.770 | 61 | 16 | 0 | 11 | 71 | 1 | 61 | 1.10e-26 | 96.3 |
| Msa1319940 | AT5G51870.5 | 71.875 | 64 | 18 | 0 | 8 | 71 | 21 | 84 | 1.56e-26 | 96.7 |
| Msa1319940 | AT5G51870.1 | 73.770 | 61 | 16 | 0 | 11 | 71 | 1 | 61 | 3.20e-26 | 95.9 |
| Msa1319940 | AT3G57230.2 | 73.333 | 60 | 16 | 0 | 11 | 70 | 1 | 60 | 3.82e-26 | 94.4 |
| Msa1319940 | AT5G15800.2 | 73.016 | 63 | 17 | 0 | 11 | 73 | 1 | 63 | 4.23e-26 | 97.1 |
| Msa1319940 | AT5G51870.4 | 73.770 | 61 | 16 | 0 | 11 | 71 | 1 | 61 | 7.16e-26 | 95.5 |
| Msa1319940 | AT5G51870.3 | 73.770 | 61 | 16 | 0 | 11 | 71 | 11 | 71 | 1.01e-25 | 95.1 |
| Msa1319940 | AT3G57230.1 | 73.333 | 60 | 16 | 0 | 11 | 70 | 1 | 60 | 1.36e-25 | 95.1 |
| Msa1319940 | AT3G57230.4 | 73.333 | 60 | 16 | 0 | 11 | 70 | 1 | 60 | 1.36e-25 | 95.1 |
| Msa1319940 | AT5G13790.1 | 75.000 | 60 | 15 | 0 | 11 | 70 | 1 | 60 | 9.14e-25 | 93.6 |
| Msa1319940 | AT5G60910.1 | 70.000 | 60 | 18 | 0 | 11 | 70 | 1 | 60 | 1.91e-24 | 92.4 |
| Msa1319940 | AT2G14210.1 | 65.152 | 66 | 23 | 0 | 11 | 76 | 1 | 66 | 2.73e-24 | 91.7 |
| Msa1319940 | AT1G71692.1 | 67.797 | 59 | 19 | 0 | 11 | 69 | 1 | 59 | 3.01e-24 | 90.9 |
| Msa1319940 | AT2G14210.2 | 65.152 | 66 | 23 | 0 | 11 | 76 | 1 | 66 | 3.10e-24 | 91.7 |
| Msa1319940 | AT3G57390.3 | 69.492 | 59 | 18 | 0 | 11 | 69 | 1 | 59 | 3.46e-24 | 91.3 |
| Msa1319940 | AT3G61120.1 | 71.186 | 59 | 17 | 0 | 11 | 69 | 1 | 59 | 3.68e-24 | 91.7 |
| Msa1319940 | AT3G30260.1 | 66.667 | 63 | 21 | 0 | 11 | 73 | 1 | 63 | 4.00e-24 | 91.7 |
| Msa1319940 | AT1G69120.2 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 5.47e-24 | 90.9 |
| Msa1319940 | AT3G57390.1 | 69.492 | 59 | 18 | 0 | 11 | 69 | 1 | 59 | 5.56e-24 | 91.3 |
| Msa1319940 | AT1G69120.1 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 1.26e-23 | 90.5 |
| Msa1319940 | AT2G22540.3 | 70.000 | 60 | 18 | 0 | 11 | 70 | 1 | 60 | 1.94e-23 | 89.7 |
| Msa1319940 | AT2G22540.1 | 70.000 | 60 | 18 | 0 | 11 | 70 | 1 | 60 | 1.94e-23 | 89.7 |
| Msa1319940 | AT4G37940.3 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 2.21e-23 | 87.8 |
| Msa1319940 | AT4G37940.4 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 2.41e-23 | 89.0 |
| Msa1319940 | AT4G37940.1 | 68.333 | 60 | 19 | 0 | 11 | 70 | 1 | 60 | 2.96e-23 | 89.0 |
| Msa1319940 | AT4G24540.1 | 62.687 | 67 | 25 | 0 | 11 | 77 | 1 | 67 | 3.63e-23 | 88.6 |
| Msa1319940 | AT1G26310.1 | 69.492 | 59 | 18 | 0 | 11 | 69 | 1 | 59 | 4.37e-23 | 89.0 |
| Msa1319940 | AT3G54340.1 | 62.903 | 62 | 23 | 0 | 11 | 72 | 1 | 62 | 8.62e-23 | 87.8 |
| Msa1319940 | AT5G13790.2 | 75.000 | 60 | 15 | 0 | 11 | 70 | 1 | 60 | 1.17e-22 | 88.2 |
| Msa1319940 | AT5G23260.1 | 58.824 | 68 | 28 | 0 | 5 | 72 | 11 | 78 | 1.69e-22 | 87.8 |
| Msa1319940 | AT5G23260.4 | 58.824 | 68 | 28 | 0 | 5 | 72 | 11 | 78 | 1.73e-22 | 87.8 |
| Msa1319940 | AT5G10140.2 | 63.492 | 63 | 23 | 0 | 11 | 73 | 1 | 63 | 4.45e-22 | 84.3 |
| Msa1319940 | AT5G10140.4 | 63.492 | 63 | 23 | 0 | 11 | 73 | 1 | 63 | 6.76e-22 | 84.3 |
| Msa1319940 | AT5G10140.1 | 63.492 | 63 | 23 | 0 | 11 | 73 | 1 | 63 | 8.23e-22 | 84.3 |
| Msa1319940 | AT5G10140.3 | 63.492 | 63 | 23 | 0 | 11 | 73 | 1 | 63 | 9.78e-22 | 84.0 |
| Msa1319940 | AT2G22630.1 | 65.000 | 60 | 21 | 0 | 11 | 70 | 1 | 60 | 1.16e-21 | 84.7 |
| Msa1319940 | AT2G22630.2 | 65.000 | 60 | 21 | 0 | 11 | 70 | 1 | 60 | 1.16e-21 | 84.7 |
| Msa1319940 | AT1G77980.1 | 56.164 | 73 | 32 | 0 | 11 | 83 | 1 | 73 | 1.38e-21 | 86.3 |
| Msa1319940 | AT5G65070.4 | 57.143 | 70 | 30 | 0 | 11 | 80 | 1 | 70 | 1.57e-21 | 82.4 |
| Msa1319940 | AT1G22130.1 | 63.492 | 63 | 23 | 0 | 11 | 73 | 1 | 63 | 1.84e-21 | 85.9 |
| Msa1319940 | AT5G23260.3 | 62.903 | 62 | 23 | 0 | 11 | 72 | 1 | 62 | 3.22e-21 | 84.0 |
| Msa1319940 | AT5G65070.1 | 57.143 | 70 | 30 | 0 | 11 | 80 | 1 | 70 | 3.24e-21 | 82.8 |
| Msa1319940 | AT5G23260.2 | 62.903 | 62 | 23 | 0 | 11 | 72 | 1 | 62 | 4.02e-21 | 84.0 |
| Msa1319940 | AT2G22540.2 | 66.667 | 57 | 19 | 0 | 11 | 67 | 1 | 57 | 4.57e-21 | 83.2 |
| Msa1319940 | AT5G20240.2 | 62.069 | 58 | 22 | 0 | 11 | 68 | 1 | 58 | 5.07e-21 | 81.3 |
| Msa1319940 | AT5G65070.2 | 57.143 | 70 | 30 | 0 | 11 | 80 | 1 | 70 | 7.40e-21 | 82.8 |
| Msa1319940 | AT5G65070.5 | 57.143 | 70 | 30 | 0 | 11 | 80 | 1 | 70 | 1.04e-20 | 82.0 |
| Msa1319940 | AT5G20240.1 | 62.069 | 58 | 22 | 0 | 11 | 68 | 1 | 58 | 2.75e-20 | 80.9 |
| Msa1319940 | AT1G77950.3 | 52.055 | 73 | 35 | 0 | 11 | 83 | 1 | 73 | 1.51e-19 | 79.7 |
| Msa1319940 | AT1G77950.2 | 52.055 | 73 | 35 | 0 | 11 | 83 | 1 | 73 | 1.51e-19 | 79.7 |
| Msa1319940 | AT1G77950.1 | 52.055 | 73 | 35 | 0 | 11 | 83 | 1 | 73 | 1.51e-19 | 79.7 |
| Msa1319940 | AT1G77950.4 | 52.055 | 73 | 35 | 0 | 11 | 83 | 1 | 73 | 1.51e-19 | 79.7 |
| Msa1319940 | AT5G65070.3 | 62.712 | 59 | 22 | 0 | 11 | 69 | 1 | 59 | 1.68e-19 | 79.3 |
| Msa1319940 | AT5G65050.2 | 54.545 | 66 | 30 | 0 | 11 | 76 | 1 | 66 | 4.85e-19 | 77.0 |
| Msa1319940 | AT5G65050.1 | 54.545 | 66 | 30 | 0 | 11 | 76 | 1 | 66 | 8.09e-19 | 76.3 |
| Msa1319940 | AT5G65050.3 | 54.545 | 66 | 30 | 0 | 11 | 76 | 1 | 66 | 9.38e-19 | 76.6 |
| Msa1319940 | AT5G65050.5 | 54.545 | 66 | 30 | 0 | 11 | 76 | 1 | 66 | 9.57e-19 | 76.3 |
| Msa1319940 | AT5G65080.3 | 50.704 | 71 | 35 | 0 | 6 | 76 | 3 | 73 | 1.02e-17 | 73.6 |
| Msa1319940 | AT5G65060.2 | 51.515 | 66 | 32 | 0 | 11 | 76 | 1 | 66 | 2.50e-17 | 72.4 |
| Msa1319940 | AT5G65060.3 | 51.515 | 66 | 32 | 0 | 11 | 76 | 1 | 66 | 2.60e-17 | 72.8 |
| Msa1319940 | AT5G65060.1 | 51.515 | 66 | 32 | 0 | 11 | 76 | 1 | 66 | 2.73e-17 | 72.8 |
| Msa1319940 | AT5G65080.2 | 47.222 | 72 | 38 | 0 | 6 | 77 | 3 | 74 | 3.93e-17 | 72.4 |
| Msa1319940 | AT1G31140.1 | 55.000 | 60 | 27 | 0 | 11 | 70 | 1 | 60 | 8.19e-17 | 71.6 |
| Msa1319940 | AT1G18750.4 | 51.613 | 62 | 30 | 0 | 11 | 72 | 1 | 62 | 8.70e-17 | 73.6 |
| Msa1319940 | AT1G18750.1 | 51.613 | 62 | 30 | 0 | 11 | 72 | 1 | 62 | 8.95e-17 | 73.6 |
| Msa1319940 | AT1G31140.2 | 55.000 | 60 | 27 | 0 | 11 | 70 | 1 | 60 | 9.01e-17 | 71.6 |
| Msa1319940 | AT1G18750.3 | 51.613 | 62 | 30 | 0 | 11 | 72 | 1 | 62 | 9.47e-17 | 73.6 |
| Msa1319940 | AT4G37435.1 | 57.895 | 57 | 24 | 0 | 11 | 67 | 1 | 57 | 2.30e-16 | 70.1 |
| Msa1319940 | AT3G66656.1 | 51.724 | 58 | 28 | 0 | 11 | 68 | 1 | 58 | 1.47e-15 | 67.8 |
| Msa1319940 | AT1G01530.1 | 50.820 | 61 | 30 | 0 | 8 | 68 | 3 | 63 | 1.72e-15 | 68.9 |
| Msa1319940 | AT2G03060.3 | 50.000 | 62 | 31 | 0 | 11 | 72 | 1 | 62 | 1.93e-15 | 69.7 |
| Msa1319940 | AT2G03060.7 | 50.000 | 62 | 31 | 0 | 11 | 72 | 1 | 62 | 1.93e-15 | 69.7 |
| Msa1319940 | AT2G03060.1 | 50.000 | 62 | 31 | 0 | 11 | 72 | 1 | 62 | 1.93e-15 | 69.7 |
| Msa1319940 | AT2G03060.2 | 50.000 | 62 | 31 | 0 | 11 | 72 | 1 | 62 | 3.13e-15 | 69.3 |
| Msa1319940 | AT2G34440.1 | 50.000 | 58 | 29 | 0 | 11 | 68 | 1 | 58 | 5.52e-15 | 66.2 |
| Msa1319940 | AT1G77080.5 | 54.286 | 70 | 32 | 0 | 11 | 80 | 1 | 70 | 5.80e-15 | 66.2 |
| Msa1319940 | AT1G77080.11 | 56.061 | 66 | 29 | 0 | 11 | 76 | 1 | 66 | 6.53e-15 | 66.2 |
| Msa1319940 | AT1G77080.4 | 56.061 | 66 | 29 | 0 | 11 | 76 | 1 | 66 | 1.32e-14 | 65.9 |
| Msa1319940 | AT5G60440.1 | 50.820 | 61 | 30 | 0 | 8 | 68 | 3 | 63 | 1.52e-14 | 67.0 |
| Msa1319940 | AT1G77080.12 | 57.143 | 63 | 27 | 0 | 11 | 73 | 1 | 63 | 2.16e-14 | 64.3 |
| Msa1319940 | AT1G69540.2 | 44.286 | 70 | 39 | 0 | 11 | 80 | 1 | 70 | 2.52e-14 | 66.6 |
| Msa1319940 | AT4G36590.1 | 57.143 | 56 | 24 | 0 | 13 | 68 | 8 | 63 | 2.83e-14 | 65.5 |
| Msa1319940 | AT1G69540.1 | 44.286 | 70 | 39 | 0 | 11 | 80 | 1 | 70 | 3.03e-14 | 66.2 |
| Msa1319940 | AT1G77080.8 | 56.061 | 66 | 29 | 0 | 11 | 76 | 1 | 66 | 3.24e-14 | 65.1 |
| Msa1319940 | AT1G77080.2 | 57.143 | 63 | 27 | 0 | 11 | 73 | 1 | 63 | 4.99e-14 | 64.3 |
| Msa1319940 | AT1G72350.1 | 54.098 | 61 | 28 | 0 | 13 | 73 | 44 | 104 | 1.43e-13 | 63.5 |
| Msa1319940 | AT2G24840.1 | 52.542 | 59 | 28 | 0 | 9 | 67 | 60 | 118 | 5.68e-13 | 62.4 |
| Msa1319940 | AT1G65360.1 | 45.902 | 61 | 33 | 0 | 8 | 68 | 3 | 63 | 6.33e-13 | 61.6 |
| Msa1319940 | AT2G26320.1 | 47.143 | 70 | 36 | 1 | 8 | 76 | 14 | 83 | 1.96e-12 | 58.2 |
| Msa1319940 | AT3G04100.1 | 48.148 | 54 | 28 | 0 | 15 | 68 | 17 | 70 | 9.85e-12 | 58.2 |
| Msa1319940 | AT1G47760.1 | 46.552 | 58 | 31 | 0 | 11 | 68 | 1 | 58 | 1.02e-11 | 57.8 |
| Msa1319940 | AT1G29962.1 | 47.692 | 65 | 32 | 1 | 8 | 70 | 2 | 66 | 5.85e-11 | 55.8 |
Find 21 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCATTTATTTCTTAATA+TGG | 0.167043 | 8_4:+23981517 | Msa1319940:five_prime_UTR |
| TTTATAGGTGCTGTGTATTT+TGG | 0.193681 | 8_4:+23984760 | Msa1319940:CDS |
| TTCAGATCCATTGGATTTAT+AGG | 0.253584 | 8_4:+23984745 | Msa1319940:intron |
| CTTAATATGGTGGGGTAAGA+TGG | 0.331970 | 8_4:+23981530 | Msa1319940:five_prime_UTR |
| TGTTTCTGTTTCAGATCCAT+TGG | 0.421330 | 8_4:+23984736 | Msa1319940:intron |
| ACATTCTCAAAGAGGAGAAA+TGG | 0.421788 | 8_4:+23982411 | Msa1319940:CDS |
| CATTTATTTCTTAATATGGT+GGG | 0.422909 | 8_4:+23981521 | Msa1319940:five_prime_UTR |
| TTAATATGGTGGGGTAAGAT+GGG | 0.445741 | 8_4:+23981531 | Msa1319940:five_prime_UTR |
| TGGTGGGGTAAGATGGGGTC+AGG | 0.482684 | 8_4:+23981537 | Msa1319940:five_prime_UTR |
| TCATTTATTTCTTAATATGG+TGG | 0.491560 | 8_4:+23981520 | Msa1319940:five_prime_UTR |
| TTTATGAATTTGCTAGCTCT+AGG | 0.521973 | 8_4:+23982514 | Msa1319940:CDS |
| TGGGGTCAGGTTGATTAATG+AGG | 0.540818 | 8_4:+23981550 | Msa1319940:exon |
| ATTTATTTCTTAATATGGTG+GGG | 0.544084 | 8_4:+23981522 | Msa1319940:five_prime_UTR |
| AATTCATAAAGCCTCCCTCT+TGG | 0.547865 | 8_4:-23982501 | None:intergenic |
| TCAGGTTGATTAATGAGGAA+AGG | 0.559252 | 8_4:+23981555 | Msa1319940:exon |
| ATCAGTGTTGTGTGATGCTG+AGG | 0.567431 | 8_4:+23982458 | Msa1319940:CDS |
| CACAGCACCTATAAATCCAA+TGG | 0.575959 | 8_4:-23984752 | None:intergenic |
| GGCAAGTAACATTCTCAAAG+AGG | 0.594159 | 8_4:+23982403 | Msa1319940:CDS |
| ACACAACACTGATAACTCAA+AGG | 0.620897 | 8_4:-23982448 | None:intergenic |
| TAATATGGTGGGGTAAGATG+GGG | 0.636610 | 8_4:+23981532 | Msa1319940:five_prime_UTR |
| GTATAGAGAACGCAACAAGT+AGG | 0.642404 | 8_4:+23982382 | Msa1319940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTATTTTTTAA+GGG | + | chr8_4:23984710-23984729 | Msa1319940:intron | 0.0% |
| !!! | ATTTTCTTGAAAAAATTAAA+TGG | - | chr8_4:23981960-23981979 | None:intergenic | 10.0% |
| !!! | AATAATAATTTTATACATCA+AGG | + | chr8_4:23982596-23982615 | Msa1319940:intron | 10.0% |
| !!! | ATAATAATTTTATACATCAA+GGG | + | chr8_4:23982597-23982616 | Msa1319940:intron | 10.0% |
| !!! | ATACTGTAATTATTATATTT+TGG | + | chr8_4:23983606-23983625 | Msa1319940:intron | 10.0% |
| !! | GAATTTGATATTAAAATTAA+AGG | - | chr8_4:23983812-23983831 | None:intergenic | 10.0% |
| !! | TTAAATCCATAATATAATAA+AGG | - | chr8_4:23983834-23983853 | None:intergenic | 10.0% |
| !! | AAAATAAAAAAAAAATCCAA+TGG | - | chr8_4:23984706-23984725 | None:intergenic | 10.0% |
| !!! | CAATCATTTATTTCTTAATA+TGG | + | chr8_4:23981517-23981536 | Msa1319940:five_prime_UTR | 15.0% |
| !! | TAAAAAATAAATAAGAGTCA+AGG | - | chr8_4:23981716-23981735 | None:intergenic | 15.0% |
| !!! | TTTCTTTTATTTTTCCAATT+TGG | + | chr8_4:23981808-23981827 | Msa1319940:intron | 15.0% |
| !!! | TTTTTGTTATGAATTGAAAT+AGG | + | chr8_4:23982233-23982252 | Msa1319940:intron | 15.0% |
| !! | ATTAATTAAGTCGAAAAAAA+AGG | - | chr8_4:23982545-23982564 | None:intergenic | 15.0% |
| !! | TGTTAGATTAAATATTTAAG+AGG | + | chr8_4:23982703-23982722 | Msa1319940:intron | 15.0% |
| !! | GTTAGATTAAATATTTAAGA+GGG | + | chr8_4:23982704-23982723 | Msa1319940:intron | 15.0% |
| !!! | TTTTTATTGACTAAACAAAT+AGG | + | chr8_4:23982824-23982843 | Msa1319940:intron | 15.0% |
| !! | TGATAACATTAAGTTATATA+GGG | + | chr8_4:23983311-23983330 | Msa1319940:intron | 15.0% |
| !!! | GTACTTTTTTTTTTTTTTGA+AGG | + | chr8_4:23983365-23983384 | Msa1319940:intron | 15.0% |
| !! | TGCAAATATATATATATCAA+AGG | - | chr8_4:23983410-23983429 | None:intergenic | 15.0% |
| !! | TTTAAAAAATAATGTGTACT+TGG | + | chr8_4:23983430-23983449 | Msa1319940:intron | 15.0% |
| !!! | TTTAAGTTACATTTTCATTT+TGG | - | chr8_4:23983695-23983714 | None:intergenic | 15.0% |
| !! | CAAATTCCTTTATTATATTA+TGG | + | chr8_4:23983825-23983844 | Msa1319940:intron | 15.0% |
| !! | ATAAAGATTCTTTACATTTA+CGG | - | chr8_4:23983867-23983886 | None:intergenic | 15.0% |
| !! | ATCATTAATAGTAACAATAT+TGG | + | chr8_4:23984085-23984104 | Msa1319940:intron | 15.0% |
| !!! | TAGTTAATAACTTAAGATTT+TGG | + | chr8_4:23984422-23984441 | Msa1319940:intron | 15.0% |
| !!! | AGTTAATAACTTAAGATTTT+GGG | + | chr8_4:23984423-23984442 | Msa1319940:intron | 15.0% |
| !!! | TCATTTATTTCTTAATATGG+TGG | + | chr8_4:23981520-23981539 | Msa1319940:five_prime_UTR | 20.0% |
| !!! | CATTTATTTCTTAATATGGT+GGG | + | chr8_4:23981521-23981540 | Msa1319940:five_prime_UTR | 20.0% |
| !!! | ATTTATTTCTTAATATGGTG+GGG | + | chr8_4:23981522-23981541 | Msa1319940:five_prime_UTR | 20.0% |
| !!! | ATTATGTATCACTACTTTTT+TGG | + | chr8_4:23981659-23981678 | Msa1319940:intron | 20.0% |
| !!! | TTATGTATCACTACTTTTTT+GGG | + | chr8_4:23981660-23981679 | Msa1319940:intron | 20.0% |
| !! | TAAAAGAAAAAATGAACCAA+AGG | - | chr8_4:23981797-23981816 | None:intergenic | 20.0% |
| !! | GAATTATATCTCATAAAAGA+AGG | - | chr8_4:23981895-23981914 | None:intergenic | 20.0% |
| !!! | CTTTTATGAGATATAATTCT+TGG | + | chr8_4:23981896-23981915 | Msa1319940:intron | 20.0% |
| !! | AAAATAGATTCCTAGAAAAA+GGG | - | chr8_4:23981934-23981953 | None:intergenic | 20.0% |
| !! | TAAAATAGATTCCTAGAAAA+AGG | - | chr8_4:23981935-23981954 | None:intergenic | 20.0% |
| !! | TTAAGATCTAGAAAACTATA+AGG | - | chr8_4:23982145-23982164 | None:intergenic | 20.0% |
| !!! | TAGTTTTCTAGATCTTAAAA+AGG | + | chr8_4:23982147-23982166 | Msa1319940:intron | 20.0% |
| !! | AGAGAAAAGAAAAGAAAAAA+TGG | + | chr8_4:23982335-23982354 | Msa1319940:CDS | 20.0% |
| !! | TTCTAATTCCAATGTTATAT+TGG | + | chr8_4:23982760-23982779 | Msa1319940:intron | 20.0% |
| !! | TTATGATTCCAATATAACAT+TGG | - | chr8_4:23982771-23982790 | None:intergenic | 20.0% |
| !! | GGAAATTTATATATATGAGT+TGG | - | chr8_4:23982863-23982882 | None:intergenic | 20.0% |
| !! | TTTGTGATTTATATAATCGA+AGG | - | chr8_4:23982884-23982903 | None:intergenic | 20.0% |
| !! | AAATCACAAATAAATCTCTT+AGG | + | chr8_4:23982894-23982913 | Msa1319940:intron | 20.0% |
| !! | AATCACAAATAAATCTCTTA+GGG | + | chr8_4:23982895-23982914 | Msa1319940:intron | 20.0% |
| !! | GAAAAACATGTTATATAGTA+TGG | - | chr8_4:23982984-23983003 | None:intergenic | 20.0% |
| !!! | CATATATCAAGTTTTGATTT+CGG | - | chr8_4:23983221-23983240 | None:intergenic | 20.0% |
| !! | CTGATAACATTAAGTTATAT+AGG | + | chr8_4:23983310-23983329 | Msa1319940:intron | 20.0% |
| !!! | TTATATTTTGGTTTTCGTAA+AGG | + | chr8_4:23983618-23983637 | Msa1319940:intron | 20.0% |
| !!! | TATATTTTGGTTTTCGTAAA+GGG | + | chr8_4:23983619-23983638 | Msa1319940:intron | 20.0% |
| !! | AATCATACTCTTGTATTATT+AGG | + | chr8_4:23984026-23984045 | Msa1319940:intron | 20.0% |
| !! | ATTAATCATAACCTAAACTA+TGG | + | chr8_4:23984054-23984073 | Msa1319940:intron | 20.0% |
| !! | TTAATCATAACCTAAACTAT+GGG | + | chr8_4:23984055-23984074 | Msa1319940:intron | 20.0% |
| !!! | CTTGACACTAATATTTTTAA+TGG | - | chr8_4:23984631-23984650 | None:intergenic | 20.0% |
| ! | ACATAATTGAGGTAAATTCA+AGG | - | chr8_4:23981646-23981665 | None:intergenic | 25.0% |
| ! | AAAGTAGTGATACATAATTG+AGG | - | chr8_4:23981657-23981676 | None:intergenic | 25.0% |
| !!! | TATGTATCACTACTTTTTTG+GGG | + | chr8_4:23981661-23981680 | Msa1319940:intron | 25.0% |
| ! | TATATCTCATAAAAGAAGGT+GGG | - | chr8_4:23981891-23981910 | None:intergenic | 25.0% |
| ! | TTATATCTCATAAAAGAAGG+TGG | - | chr8_4:23981892-23981911 | None:intergenic | 25.0% |
| ! | TATGAGATATAATTCTTGGT+AGG | + | chr8_4:23981900-23981919 | Msa1319940:intron | 25.0% |
| !! | AAATGGACGGAAAATTTTAA+GGG | - | chr8_4:23982077-23982096 | None:intergenic | 25.0% |
| ! | TTTAAACCTTGTAAGGAAAA+GGG | - | chr8_4:23982186-23982205 | None:intergenic | 25.0% |
| ! | ATTTAAACCTTGTAAGGAAA+AGG | - | chr8_4:23982187-23982206 | None:intergenic | 25.0% |
| ! | AACACAATTTAAACCTTGTA+AGG | - | chr8_4:23982193-23982212 | None:intergenic | 25.0% |
| !! | TAAATTGTGTTTTTCCTTCT+TGG | + | chr8_4:23982202-23982221 | Msa1319940:intron | 25.0% |
| ! | ACAACACAACAACAAAAATT+AGG | - | chr8_4:23982306-23982325 | None:intergenic | 25.0% |
| !! | TCATGCTAATCTTTTATTGT+TGG | - | chr8_4:23983170-23983189 | None:intergenic | 25.0% |
| ! | TATAACTTGATGTTATGGTT+GGG | - | chr8_4:23983284-23983303 | None:intergenic | 25.0% |
| ! | ATATAACTTGATGTTATGGT+TGG | - | chr8_4:23983285-23983304 | None:intergenic | 25.0% |
| ! | ACAGATATAACTTGATGTTA+TGG | - | chr8_4:23983289-23983308 | None:intergenic | 25.0% |
| ! | AATAATAACCTCATTTCCAA+AGG | + | chr8_4:23983767-23983786 | Msa1319940:intron | 25.0% |
| ! | CAGAATTATATAACAACCTT+TGG | - | chr8_4:23983786-23983805 | None:intergenic | 25.0% |
| ! | TAATCATAACCTAAACTATG+GGG | + | chr8_4:23984056-23984075 | Msa1319940:intron | 25.0% |
| ! | AATAGTAACAATATTGGTGA+AGG | + | chr8_4:23984091-23984110 | Msa1319940:intron | 25.0% |
| ! | ACCATTCCATTTGATAAAAA+TGG | + | chr8_4:23984367-23984386 | Msa1319940:intron | 25.0% |
| !!! | TCCATTTTTATCAAATGGAA+TGG | - | chr8_4:23984371-23984390 | None:intergenic | 25.0% |
| !!! | CAACATCCATTTTTATCAAA+TGG | - | chr8_4:23984376-23984395 | None:intergenic | 25.0% |
| !!! | GACACTAATATTTTTAATGG+CGG | - | chr8_4:23984628-23984647 | None:intergenic | 25.0% |
| !! | TTCTAGCTGAAATTTGAAAT+TGG | + | chr8_4:23984663-23984682 | Msa1319940:intron | 25.0% |
| ! | AAAAATCCAATGGTTCTTAA+AGG | - | chr8_4:23984696-23984715 | None:intergenic | 25.0% |
| GTAAATTCAAGGAAAAGGAT+TGG | - | chr8_4:23981635-23981654 | None:intergenic | 30.0% | |
| TTGAGGTAAATTCAAGGAAA+AGG | - | chr8_4:23981640-23981659 | None:intergenic | 30.0% | |
| !!! | ATGTATCACTACTTTTTTGG+GGG | + | chr8_4:23981662-23981681 | Msa1319940:intron | 30.0% |
| AGGAAAAGAATGGAAGAAAA+GGG | - | chr8_4:23981739-23981758 | None:intergenic | 30.0% | |
| AAGGAAAAGAATGGAAGAAA+AGG | - | chr8_4:23981740-23981759 | None:intergenic | 30.0% | |
| ! | TTCCATTCTTTTCCTTTTCT+AGG | + | chr8_4:23981744-23981763 | Msa1319940:intron | 30.0% |
| GAAAAAATGAACCAAAGGTA+CGG | - | chr8_4:23981792-23981811 | None:intergenic | 30.0% | |
| AAGGGTGATTATATGAATGA+TGG | - | chr8_4:23982059-23982078 | None:intergenic | 30.0% | |
| ! | CAAATGGACGGAAAATTTTA+AGG | - | chr8_4:23982078-23982097 | None:intergenic | 30.0% |
| ! | CTTAAAATTTTCCGTCCATT+TGG | + | chr8_4:23982076-23982095 | Msa1319940:intron | 30.0% |
| ACTCAATAAAACCAAATGGA+CGG | - | chr8_4:23982090-23982109 | None:intergenic | 30.0% | |
| TACCACTCAATAAAACCAAA+TGG | - | chr8_4:23982094-23982113 | None:intergenic | 30.0% | |
| AGGAAAAGGGATGAAAATAT+TGG | - | chr8_4:23982173-23982192 | None:intergenic | 30.0% | |
| AGAAAAGAAAAAATGGTGAG+AGG | + | chr8_4:23982342-23982361 | Msa1319940:CDS | 30.0% | |
| ! | TTATTGTTTTCTCACCAAGA+GGG | + | chr8_4:23982487-23982506 | Msa1319940:CDS | 30.0% |
| !! | TTTATGAATTTGCTAGCTCT+AGG | + | chr8_4:23982514-23982533 | Msa1319940:CDS | 30.0% |
| TATTTAAGAGGGCTAATAAG+AGG | + | chr8_4:23982715-23982734 | Msa1319940:intron | 30.0% | |
| GAAAAGCCACAAAAAATTTC+AGG | - | chr8_4:23982743-23982762 | None:intergenic | 30.0% | |
| ATAACTTGATGTTATGGTTG+GGG | - | chr8_4:23983283-23983302 | None:intergenic | 30.0% | |
| TATTGATCATACGATATTGC+AGG | - | chr8_4:23983589-23983608 | None:intergenic | 30.0% | |
| TTACCATCACAGATATAATG+CGG | + | chr8_4:23983663-23983682 | Msa1319940:intron | 30.0% | |
| ! | TATAACAACCTTTGGAAATG+AGG | - | chr8_4:23983778-23983797 | None:intergenic | 30.0% |
| ! | AACCATCATTTGTTAGTTTG+AGG | + | chr8_4:23984175-23984194 | Msa1319940:intron | 30.0% |
| !! | TTTTGGGTAACATGTGATAT+CGG | + | chr8_4:23984439-23984458 | Msa1319940:intron | 30.0% |
| TGATATCGGAATCAATTAAG+TGG | + | chr8_4:23984453-23984472 | Msa1319940:intron | 30.0% | |
| GAACTAACAAACAACTACAA+AGG | - | chr8_4:23984498-23984517 | None:intergenic | 30.0% | |
| TTCAGATCCATTGGATTTAT+AGG | + | chr8_4:23984745-23984764 | Msa1319940:intron | 30.0% | |
| !! | TTTATAGGTGCTGTGTATTT+TGG | + | chr8_4:23984760-23984779 | Msa1319940:CDS | 30.0% |
| ! | TTAATATGGTGGGGTAAGAT+GGG | + | chr8_4:23981531-23981550 | Msa1319940:five_prime_UTR | 35.0% |
| !! | TCAGGTTGATTAATGAGGAA+AGG | + | chr8_4:23981555-23981574 | Msa1319940:exon | 35.0% |
| GTTGATTAATGAGGAAAGGT+AGG | + | chr8_4:23981559-23981578 | Msa1319940:intron | 35.0% | |
| TCAAGGAAAAGGATTGGATT+TGG | - | chr8_4:23981629-23981648 | None:intergenic | 35.0% | |
| TGCCTAGAAAAGGAAAAGAA+TGG | - | chr8_4:23981749-23981768 | None:intergenic | 35.0% | |
| ! | AATCTGCTTCATTTTGTTGC+TGG | + | chr8_4:23981835-23981854 | Msa1319940:intron | 35.0% |
| !!! | GTCCATTTGGTTTTATTGAG+TGG | + | chr8_4:23982089-23982108 | Msa1319940:intron | 35.0% |
| ! | TTTCATCCCTTTTCCTTACA+AGG | + | chr8_4:23982177-23982196 | Msa1319940:intron | 35.0% |
| ! | TGTGTTTTTCCTTCTTGGTT+AGG | + | chr8_4:23982207-23982226 | Msa1319940:intron | 35.0% |
| CAAAAAAGTCCTAACCAAGA+AGG | - | chr8_4:23982219-23982238 | None:intergenic | 35.0% | |
| ACATTCTCAAAGAGGAGAAA+TGG | + | chr8_4:23982411-23982430 | Msa1319940:CDS | 35.0% | |
| ACACAACACTGATAACTCAA+AGG | - | chr8_4:23982451-23982470 | None:intergenic | 35.0% | |
| ! | CTTATTGTTTTCTCACCAAG+AGG | + | chr8_4:23982486-23982505 | Msa1319940:CDS | 35.0% |
| AGATGCAATCACACAATTTG+AGG | - | chr8_4:23982576-23982595 | None:intergenic | 35.0% | |
| TAAATCTCTTAGGGTGTGTT+TGG | + | chr8_4:23982904-23982923 | Msa1319940:intron | 35.0% | |
| TTATTGTTGGTGTGACCTTA+GGG | - | chr8_4:23983157-23983176 | None:intergenic | 35.0% | |
| TTTATTGTTGGTGTGACCTT+AGG | - | chr8_4:23983158-23983177 | None:intergenic | 35.0% | |
| TAACTTGATGTTATGGTTGG+GGG | - | chr8_4:23983282-23983301 | None:intergenic | 35.0% | |
| TATATAGGGTTGAAGTAGCA+CGG | + | chr8_4:23983325-23983344 | Msa1319940:intron | 35.0% | |
| GATATTGATCCCCATAGTTT+AGG | - | chr8_4:23984068-23984087 | None:intergenic | 35.0% | |
| TGCCTCAAACTAACAAATGA+TGG | - | chr8_4:23984180-23984199 | None:intergenic | 35.0% | |
| ATCGTATACCATACGTTGTT+GGG | - | chr8_4:23984275-23984294 | None:intergenic | 35.0% | |
| AATCGTATACCATACGTTGT+TGG | - | chr8_4:23984276-23984295 | None:intergenic | 35.0% | |
| CATTCAATCAAATCAACCCT+TGG | + | chr8_4:23984322-23984341 | Msa1319940:intron | 35.0% | |
| AATCAAATCAACCCTTGGAT+TGG | + | chr8_4:23984327-23984346 | Msa1319940:intron | 35.0% | |
| ATCAAATCAACCCTTGGATT+GGG | + | chr8_4:23984328-23984347 | Msa1319940:intron | 35.0% | |
| AAGTCAAGAGCTAACAGAAA+TGG | - | chr8_4:23984568-23984587 | None:intergenic | 35.0% | |
| ! | TGTTTCTGTTTCAGATCCAT+TGG | + | chr8_4:23984736-23984755 | Msa1319940:intron | 35.0% |
| ! | CTTAATATGGTGGGGTAAGA+TGG | + | chr8_4:23981530-23981549 | Msa1319940:five_prime_UTR | 40.0% |
| ! | TAATATGGTGGGGTAAGATG+GGG | + | chr8_4:23981532-23981551 | Msa1319940:five_prime_UTR | 40.0% |
| TAAAGGGTTGTGCCTAGAAA+AGG | - | chr8_4:23981759-23981778 | None:intergenic | 40.0% | |
| GTACGGATAGGAGGAATAAA+GGG | - | chr8_4:23981775-23981794 | None:intergenic | 40.0% | |
| ! | AATGAACCAAAGGTACGGAT+AGG | - | chr8_4:23981787-23981806 | None:intergenic | 40.0% |
| GAAGCAGATTTGCACCAAAT+TGG | - | chr8_4:23981825-23981844 | None:intergenic | 40.0% | |
| ! | GGTGTTTAGACCCTTTTTCT+AGG | + | chr8_4:23981921-23981940 | Msa1319940:intron | 40.0% |
| GTATAGAGAACGCAACAAGT+AGG | + | chr8_4:23982382-23982401 | Msa1319940:CDS | 40.0% | |
| GGCAAGTAACATTCTCAAAG+AGG | + | chr8_4:23982403-23982422 | Msa1319940:CDS | 40.0% | |
| AATTCATAAAGCCTCCCTCT+TGG | - | chr8_4:23982504-23982523 | None:intergenic | 40.0% | |
| !!! | GAGGAGCCTGAAATTTTTTG+TGG | + | chr8_4:23982734-23982753 | Msa1319940:intron | 40.0% |
| TTAGGGTGTGTTTGGATTGA+GGG | + | chr8_4:23982912-23982931 | Msa1319940:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr8_4:23982918-23982937 | Msa1319940:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr8_4:23982922-23982941 | Msa1319940:intron | 40.0% | |
| TTTGGATGAGGGTTTAGAAG+GGG | - | chr8_4:23983130-23983149 | None:intergenic | 40.0% | |
| GTTTGGATGAGGGTTTAGAA+GGG | - | chr8_4:23983131-23983150 | None:intergenic | 40.0% | |
| TGTTTGGATGAGGGTTTAGA+AGG | - | chr8_4:23983132-23983151 | None:intergenic | 40.0% | |
| TGATCATACGATATTGCAGG+AGG | - | chr8_4:23983586-23983605 | None:intergenic | 40.0% | |
| ACACCGCATTATATCTGTGA+TGG | - | chr8_4:23983669-23983688 | None:intergenic | 40.0% | |
| TAAAGATGCACCCAATCCAA+GGG | - | chr8_4:23984341-23984360 | None:intergenic | 40.0% | |
| ATAAAGATGCACCCAATCCA+AGG | - | chr8_4:23984342-23984361 | None:intergenic | 40.0% | |
| GATTGGGTGCATCTTTATAG+AGG | + | chr8_4:23984344-23984363 | Msa1319940:intron | 40.0% | |
| AAGTGGTTGTCCAATGCTTT+AGG | + | chr8_4:23984470-23984489 | Msa1319940:intron | 40.0% | |
| TACAAAGGAGCCTAAAGCAT+TGG | - | chr8_4:23984483-23984502 | None:intergenic | 40.0% | |
| ! | GCTTCACCTTTAAGAACCAT+TGG | + | chr8_4:23984687-23984706 | Msa1319940:intron | 40.0% |
| CACAGCACCTATAAATCCAA+TGG | - | chr8_4:23984755-23984774 | None:intergenic | 40.0% | |
| !! | TGGGGTCAGGTTGATTAATG+AGG | + | chr8_4:23981550-23981569 | Msa1319940:exon | 45.0% |
| GGTACGGATAGGAGGAATAA+AGG | - | chr8_4:23981776-23981795 | None:intergenic | 45.0% | |
| ATTCCTCCTATCCGTACCTT+TGG | + | chr8_4:23981778-23981797 | Msa1319940:intron | 45.0% | |
| ATCAGTGTTGTGTGATGCTG+AGG | + | chr8_4:23982458-23982477 | Msa1319940:CDS | 45.0% | |
| ! | TTGTTTTCTCACCAAGAGGG+AGG | + | chr8_4:23982490-23982509 | Msa1319940:CDS | 45.0% |
| CTTAGGGTGTGTTTGGATTG+AGG | + | chr8_4:23982911-23982930 | Msa1319940:intron | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr8_4:23982921-23982940 | Msa1319940:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr8_4:23982923-23982942 | Msa1319940:intron | 45.0% | |
| ATGAGGGTTTAGAAGGGGAA+GGG | - | chr8_4:23983125-23983144 | None:intergenic | 45.0% | |
| CTTAGGGTGTGTTTGGATGA+GGG | - | chr8_4:23983141-23983160 | None:intergenic | 45.0% | |
| CTTTGACACCCAACAACGTA+TGG | + | chr8_4:23984264-23984283 | Msa1319940:intron | 45.0% | |
| AGAAATGGCTGCCTCAACAA+GGG | - | chr8_4:23984553-23984572 | None:intergenic | 45.0% | |
| !!! | TATTTTTCATTTTTAAATTA+CGG | - | chr8_4:23983091-23983110 | None:intergenic | 5.0% |
| !!! | ATTTTTTATGAATATAATAA+TGG | - | chr8_4:23984240-23984259 | None:intergenic | 5.0% |
| !!! | GATTTTTTTTTTATTTTTTA+AGG | + | chr8_4:23984709-23984728 | Msa1319940:intron | 5.0% |
| ! | GAACCAAAGGTACGGATAGG+AGG | - | chr8_4:23981784-23981803 | None:intergenic | 50.0% |
| AGGGTTTAGGAGGGGAATGA+AGG | + | chr8_4:23982931-23982950 | Msa1319940:intron | 50.0% | |
| GGGTTTAGGAGGGGAATGAA+GGG | + | chr8_4:23982932-23982951 | Msa1319940:intron | 50.0% | |
| GGTTTAGGAGGGGAATGAAG+GGG | + | chr8_4:23982933-23982952 | Msa1319940:intron | 50.0% | |
| GGTTTAGAAGGGGAAGGGAT+GGG | - | chr8_4:23983120-23983139 | None:intergenic | 50.0% | |
| GATGAGGGTTTAGAAGGGGA+AGG | - | chr8_4:23983126-23983145 | None:intergenic | 50.0% | |
| CCTTAGGGTGTGTTTGGATG+AGG | - | chr8_4:23983142-23983161 | None:intergenic | 50.0% | |
| CCTCATCCAAACACACCCTA+AGG | + | chr8_4:23983139-23983158 | Msa1319940:intron | 50.0% | |
| GTGTGACCTTAGGGTGTGTT+TGG | - | chr8_4:23983148-23983167 | None:intergenic | 50.0% | |
| ! | GTTATGGTTGGGGGTGCAAA+GGG | - | chr8_4:23983273-23983292 | None:intergenic | 50.0% |
| ! | TGTTATGGTTGGGGGTGCAA+AGG | - | chr8_4:23983274-23983293 | None:intergenic | 50.0% |
| TGCCTCAACAAGGGCAAGAA+CGG | - | chr8_4:23984544-23984563 | None:intergenic | 50.0% | |
| CAGAAATGGCTGCCTCAACA+AGG | - | chr8_4:23984554-23984573 | None:intergenic | 50.0% | |
| TAGAAGGGGAAGGGATGGGA+GGG | - | chr8_4:23983116-23983135 | None:intergenic | 55.0% | |
| TTAGAAGGGGAAGGGATGGG+AGG | - | chr8_4:23983117-23983136 | None:intergenic | 55.0% | |
| GGGTTTAGAAGGGGAAGGGA+TGG | - | chr8_4:23983121-23983140 | None:intergenic | 55.0% | |
| CACCGTTCTTGCCCTTGTTG+AGG | + | chr8_4:23984539-23984558 | Msa1319940:intron | 55.0% | |
| TGGTGGGGTAAGATGGGGTC+AGG | + | chr8_4:23981537-23981556 | Msa1319940:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 23981514 | 23984798 | 23981514 | ID=Msa1319940;Name=Msa1319940 |
| chr8_4 | mRNA | 23981514 | 23984798 | 23981514 | ID=Msa1319940-mRNA-1;Parent=Msa1319940;Name=Msa1319940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=53|0.5|0.66|0.66|0.5|0.33|3|0|86 |
| chr8_4 | exon | 23981514 | 23981576 | 23981514 | ID=Msa1319940-mRNA-1:exon:8261;Parent=Msa1319940-mRNA-1 |
| chr8_4 | exon | 23982334 | 23982535 | 23982334 | ID=Msa1319940-mRNA-1:exon:8262;Parent=Msa1319940-mRNA-1 |
| chr8_4 | exon | 23984750 | 23984798 | 23984750 | ID=Msa1319940-mRNA-1:exon:8263;Parent=Msa1319940-mRNA-1 |
| chr8_4 | five_prime_UTR | 23981514 | 23981566 | 23981514 | ID=Msa1319940-mRNA-1:five_prime_utr;Parent=Msa1319940-mRNA-1 |
| chr8_4 | CDS | 23981567 | 23981576 | 23981567 | ID=Msa1319940-mRNA-1:cds;Parent=Msa1319940-mRNA-1 |
| chr8_4 | CDS | 23982334 | 23982535 | 23982334 | ID=Msa1319940-mRNA-1:cds;Parent=Msa1319940-mRNA-1 |
| chr8_4 | CDS | 23984750 | 23984798 | 23984750 | ID=Msa1319940-mRNA-1:cds;Parent=Msa1319940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
