AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1319960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319960 MtrunA17_Chr8g0351051 98.333 240 4 0 1 240 12 251 3.61e-179 491
Msa1319960 MtrunA17_Chr3g0122251 48.780 246 107 7 1 239 12 245 5.36e-66 204
Msa1319960 MtrunA17_Chr6g0455511 48.163 245 116 7 1 240 12 250 2.52e-64 200
Msa1319960 MtrunA17_Chr7g0220111 46.122 245 120 7 1 240 12 249 2.10e-60 190
Msa1319960 MtrunA17_Chr7g0246401 70.370 135 30 3 110 240 1 129 4.53e-60 185
Msa1319960 MtrunA17_Chr5g0420091 61.963 163 59 2 1 161 12 173 9.95e-60 187
Msa1319960 MtrunA17_Chr1g0204111 44.495 218 101 2 2 218 29 227 2.10e-55 177
Msa1319960 MtrunA17_Chr4g0061671 56.790 162 67 3 1 161 12 171 1.81e-52 168
Msa1319960 MtrunA17_Chr6g0474371 56.962 158 66 2 1 156 12 169 9.38e-52 166
Msa1319960 MtrunA17_Chr4g0061691 56.051 157 68 1 1 156 12 168 5.46e-51 166
Msa1319960 MtrunA17_Chr2g0284911 48.125 160 83 0 1 160 27 186 2.60e-47 157
Msa1319960 MtrunA17_Chr8g0366231 44.498 209 107 5 1 204 12 216 4.86e-46 153
Msa1319960 MtrunA17_Chr3g0097101 49.375 160 81 0 1 160 27 186 1.25e-45 152
Msa1319960 MtrunA17_Chr8g0380021 43.229 192 102 2 1 191 28 213 1.58e-45 152
Msa1319960 MtrunA17_Chr5g0420081 44.279 201 108 4 1 198 12 211 1.50e-43 147
Msa1319960 MtrunA17_Chr4g0057151 51.220 164 64 3 1 156 12 167 2.51e-43 145
Msa1319960 MtrunA17_Chr8g0351031 49.682 157 78 1 1 156 12 168 4.49e-43 145
Msa1319960 MtrunA17_Chr7g0246431 50.000 156 78 0 1 156 12 167 5.74e-43 144
Msa1319960 MtrunA17_Chr3g0077501 42.781 187 97 1 1 177 12 198 7.25e-43 144
Msa1319960 MtrunA17_Chr8g0351041 48.667 150 76 1 1 149 12 161 6.65e-41 137
Msa1319960 MtrunA17_Chr2g0279821 38.496 226 126 5 1 222 12 228 1.03e-40 139
Msa1319960 MtrunA17_Chr7g0220121 47.826 161 73 3 1 156 12 166 6.97e-39 135
Msa1319960 MtrunA17_Chr5g0411691 44.595 148 74 2 1 145 12 154 1.61e-35 126
Msa1319960 MtrunA17_Chr1g0164791 36.161 224 119 5 1 215 12 220 8.32e-35 124
Msa1319960 MtrunA17_Chr8g0377551 37.766 188 105 4 53 239 3 179 3.25e-34 121
Msa1319960 MtrunA17_Chr4g0049541 45.270 148 74 2 1 145 12 155 4.38e-34 122
Msa1319960 MtrunA17_Chr4g0020221 44.848 165 85 2 1 161 12 174 3.45e-31 115
Msa1319960 MtrunA17_Chr4g0018421 42.593 162 85 3 1 157 12 170 1.67e-30 112
Msa1319960 MtrunA17_Chr3g0125241 44.118 136 69 2 1 134 37 167 9.43e-30 110
Msa1319960 MtrunA17_Chr5g0427401 39.583 192 97 5 1 188 12 188 8.36e-29 108
Msa1319960 MtrunA17_Chr5g0412461 40.541 185 99 4 1 180 12 190 1.05e-28 108
Msa1319960 MtrunA17_Chr5g0412271 40.237 169 87 3 1 162 12 173 3.13e-28 107
Msa1319960 MtrunA17_Chr4g0049901 36.410 195 108 5 1 188 38 223 4.37e-28 107
Msa1319960 MtrunA17_Chr3g0142191 34.956 226 119 7 1 207 12 228 3.75e-27 104
Msa1319960 MtrunA17_Chr5g0404951 38.596 171 86 5 1 161 12 173 2.26e-26 102
Msa1319960 MtrunA17_Chr1g0159661 39.333 150 82 3 1 146 12 156 4.76e-25 97.4
Msa1319960 MtrunA17_Chr8g0377561 95.652 46 2 0 1 46 12 57 3.50e-24 92.8
Msa1319960 MtrunA17_Chr7g0246381 93.750 48 3 0 1 48 12 59 1.83e-23 90.1
Msa1319960 MtrunA17_Chr2g0308251 83.333 48 8 0 1 48 12 59 3.64e-22 87.0
Msa1319960 MtrunA17_Chr1g0173161 83.333 48 8 0 1 48 12 59 1.68e-19 80.1
Msa1319960 MtrunA17_Chr2g0308271 40.741 108 64 0 53 160 36 143 1.17e-18 81.3
Msa1319960 MtrunA17_Chr1g0166611 44.762 105 48 3 5 109 20 114 1.63e-18 79.0
Msa1319960 MtrunA17_Chr5g0427921 70.833 48 14 0 1 48 12 59 1.56e-16 71.6
Msa1319960 MtrunA17_Chr3g0134451 34.940 166 86 7 1 149 12 172 3.79e-16 76.3
Msa1319960 MtrunA17_Chr4g0044071 65.957 47 16 0 1 47 12 58 5.84e-16 71.6
Msa1319960 MtrunA17_Chr2g0292791 36.306 157 84 5 2 151 20 167 6.69e-16 74.3
Msa1319960 MtrunA17_Chr1g0208581 34.437 151 81 4 2 144 20 160 8.73e-16 73.9
Msa1319960 MtrunA17_Chr5g0425191 68.085 47 15 0 1 47 12 58 1.78e-15 70.1
Msa1319960 MtrunA17_Chr7g0246391 53.521 71 30 3 32 101 26 94 2.67e-15 69.7
Msa1319960 MtrunA17_Chr3g0089141 40.000 95 55 1 2 96 20 112 9.88e-15 70.9
Msa1319960 MtrunA17_Chr1g0208561 50.000 68 32 1 2 69 20 85 1.04e-14 70.9
Msa1319960 MtrunA17_Chr2g0325971 33.113 151 83 5 2 144 20 160 1.10e-14 70.9
Msa1319960 MtrunA17_Chr5g0419601 54.412 68 29 1 2 69 20 85 3.04e-14 69.7
Msa1319960 MtrunA17_Chr4g0018951 57.407 54 23 0 5 58 26 79 4.16e-14 68.2
Msa1319960 MtrunA17_Chr2g0317451 52.941 68 30 1 2 69 20 85 6.24e-14 68.9
Msa1319960 MtrunA17_Chr2g0317481 52.941 68 30 1 2 69 20 85 6.63e-14 68.9
Msa1319960 MtrunA17_Chr3g0099411 54.386 57 26 0 2 58 20 76 7.12e-14 68.6
Msa1319960 MtrunA17_Chr8g0376821 56.604 53 23 0 6 58 17 69 7.40e-14 67.8
Msa1319960 MtrunA17_Chr3g0099421 35.669 157 85 5 2 151 45 192 1.06e-13 68.6
Msa1319960 MtrunA17_Chr1g0206721 54.386 57 26 0 2 58 20 76 1.16e-13 68.2
Msa1319960 MtrunA17_Chr1g0169761 56.604 53 23 0 6 58 17 69 1.27e-13 67.0
Msa1319960 MtrunA17_Chr1g0206701 54.386 57 26 0 2 58 20 76 1.47e-13 67.8
Msa1319960 MtrunA17_Chr8g0355091 33.333 156 90 4 2 151 20 167 1.91e-13 67.8
Msa1319960 MtrunA17_Chr8g0379021 51.724 58 28 0 1 58 22 79 2.28e-13 66.2
Msa1319960 MtrunA17_Chr1g0187361 54.386 57 26 0 2 58 20 76 2.84e-13 67.0
Msa1319960 MtrunA17_Chr1g0149391 56.140 57 25 0 2 58 20 76 3.33e-13 67.0
Msa1319960 MtrunA17_Chr5g0422941 51.471 68 32 1 2 69 20 86 6.48e-13 66.2
Msa1319960 MtrunA17_Chr1g0188671 54.386 57 26 0 2 58 58 114 6.50e-13 66.6
Msa1319960 MtrunA17_Chr1g0206691 52.632 57 27 0 2 58 3 59 6.58e-13 65.9
Msa1319960 MtrunA17_Chr4g0074101 52.830 53 25 0 6 58 17 69 8.37e-13 65.1
Msa1319960 MtrunA17_Chr1g0187351 50.000 66 32 1 2 67 3 67 9.68e-13 61.6
Msa1319960 MtrunA17_Chr3g0119901 47.222 72 34 2 3 72 21 90 1.21e-12 64.7
Msa1319960 MtrunA17_Chr1g0175611 54.717 53 24 0 6 58 17 69 1.31e-12 63.9
Msa1319960 MtrunA17_Chr5g0422421 51.471 68 32 1 2 69 20 86 1.55e-12 65.1
Msa1319960 MtrunA17_Chr1g0206991 50.877 57 28 0 2 58 20 76 1.98e-12 63.9
Msa1319960 MtrunA17_Chr8g0357771 58.696 46 19 0 2 47 13 58 2.29e-12 63.5
Msa1319960 MtrunA17_Chr1g0180591 52.830 53 25 0 6 58 17 69 3.25e-12 63.2
Msa1319960 MtrunA17_Chr2g0333981 51.724 58 28 0 1 58 22 79 5.82e-12 62.4
Msa1319960 MtrunA17_Chr1g0175601 32.283 127 78 2 6 124 17 143 5.87e-12 62.4
Msa1319960 MtrunA17_Chr2g0300441 50.877 57 28 0 2 58 20 76 9.24e-12 62.8
Msa1319960 MtrunA17_Chr3g0085241 44.444 72 36 2 3 72 53 122 1.12e-11 62.8
Msa1319960 MtrunA17_Chr3g0089151 35.455 110 65 3 2 108 20 126 1.26e-11 60.5
Msa1319960 MtrunA17_Chr4g0052061 56.250 48 21 0 1 48 12 59 1.47e-11 60.8
Msa1319960 MtrunA17_Chr4g0071601 52.830 53 25 0 6 58 27 79 1.49e-11 61.6
Msa1319960 MtrunA17_Chr2g0300421 32.593 135 71 5 5 130 23 146 3.10e-11 60.5
Msa1319960 MtrunA17_Chr3g0111841 49.231 65 32 1 2 66 7 70 5.45e-11 57.0
Msa1319960 MtrunA17_Chr5g0427961 31.818 110 64 3 54 160 9 110 9.78e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319960 AT2G45650.1 65.164 244 78 5 1 240 12 252 1.25e-104 303
Msa1319960 AT3G61120.1 55.602 241 94 6 1 236 12 244 1.33e-78 237
Msa1319960 AT3G02310.1 47.521 242 122 3 1 240 12 250 1.11e-66 207
Msa1319960 AT5G15800.1 46.058 241 128 2 1 240 12 251 1.83e-63 198
Msa1319960 AT1G24260.2 47.368 247 108 7 1 239 12 244 1.43e-61 194
Msa1319960 AT5G15800.2 50.237 211 103 2 1 210 12 221 2.36e-61 193
Msa1319960 AT1G24260.1 47.951 244 110 7 1 239 12 243 1.09e-60 191
Msa1319960 AT3G02310.2 60.625 160 62 1 1 159 12 171 7.09e-59 185
Msa1319960 AT1G24260.3 45.749 247 98 9 1 239 12 230 2.42e-55 177
Msa1319960 AT2G03710.1 41.569 255 126 7 1 240 12 258 3.38e-55 177
Msa1319960 AT2G03710.2 41.961 255 124 8 1 240 12 257 1.85e-54 176
Msa1319960 AT2G03710.3 52.469 162 74 2 1 160 12 172 2.65e-50 163
Msa1319960 AT3G58780.5 48.555 173 88 1 1 172 33 205 2.47e-48 160
Msa1319960 AT3G58780.1 48.555 173 88 1 1 172 27 199 2.91e-48 159
Msa1319960 AT1G26310.1 45.370 216 108 5 1 210 12 223 3.74e-48 159
Msa1319960 AT2G42830.1 50.000 160 80 0 1 160 27 186 1.92e-47 157
Msa1319960 AT1G69120.2 44.749 219 113 5 1 214 12 227 3.74e-47 156
Msa1319960 AT1G69120.1 53.797 158 70 3 1 156 12 168 2.96e-46 154
Msa1319960 AT5G60910.1 50.000 162 80 1 1 161 12 173 9.49e-46 153
Msa1319960 AT4G18960.1 40.948 232 116 5 1 229 28 241 1.53e-45 152
Msa1319960 AT2G42830.2 49.383 162 80 1 1 160 27 188 2.09e-45 152
Msa1319960 AT4G22950.2 50.932 161 78 1 1 161 12 171 6.71e-45 148
Msa1319960 AT4G22950.3 51.220 164 79 1 1 164 12 174 1.11e-44 149
Msa1319960 AT4G22950.1 51.220 164 79 1 1 164 12 174 1.11e-44 149
Msa1319960 AT3G58780.2 46.821 173 84 2 1 172 27 192 3.03e-44 149
Msa1319960 AT4G09960.1 42.188 192 99 2 1 180 12 203 3.13e-43 146
Msa1319960 AT4G09960.6 42.188 192 99 2 1 180 13 204 3.22e-43 146
Msa1319960 AT5G62165.3 48.428 159 82 0 1 159 12 170 3.30e-43 145
Msa1319960 AT5G62165.1 48.428 159 82 0 1 159 12 170 3.30e-43 145
Msa1319960 AT5G62165.2 48.428 159 82 0 1 159 12 170 3.30e-43 145
Msa1319960 AT4G09960.5 42.188 192 99 2 1 180 22 213 3.62e-43 146
Msa1319960 AT3G58780.3 42.929 198 87 2 1 172 27 224 7.79e-43 146
Msa1319960 AT4G09960.3 42.188 192 99 2 1 180 38 229 1.40e-42 145
Msa1319960 AT5G62165.17 50.350 143 71 0 1 143 12 154 1.61e-42 142
Msa1319960 AT5G62165.12 50.350 143 71 0 1 143 12 154 1.61e-42 142
Msa1319960 AT5G62165.11 50.350 143 71 0 1 143 12 154 1.61e-42 142
Msa1319960 AT2G45660.1 49.068 161 72 2 1 156 12 167 2.01e-42 143
Msa1319960 AT3G58780.4 40.777 206 88 2 1 172 27 232 1.65e-41 143
Msa1319960 AT2G45660.2 50.000 150 65 2 1 145 12 156 5.97e-41 138
Msa1319960 AT5G62165.6 49.630 135 68 0 1 135 12 146 1.02e-39 134
Msa1319960 AT5G62165.9 49.630 135 68 0 1 135 12 146 1.02e-39 134
Msa1319960 AT5G62165.7 49.630 135 68 0 1 135 12 146 1.02e-39 134
Msa1319960 AT5G62165.8 49.630 135 68 0 1 135 12 146 1.02e-39 134
Msa1319960 AT5G62165.13 49.630 135 68 0 1 135 12 146 1.02e-39 134
Msa1319960 AT4G09960.4 41.327 196 99 3 1 180 107 302 8.65e-39 137
Msa1319960 AT4G11880.2 50.685 146 70 2 1 145 12 156 1.46e-38 132
Msa1319960 AT4G11880.3 50.685 146 70 2 1 145 12 156 1.46e-38 132
Msa1319960 AT5G62165.10 48.551 138 71 0 1 138 12 149 4.50e-38 132
Msa1319960 AT5G62165.4 48.551 138 71 0 1 138 12 149 4.50e-38 132
Msa1319960 AT4G09960.2 48.092 131 68 0 1 131 12 142 7.08e-38 132
Msa1319960 AT3G57230.1 46.154 143 76 1 2 144 13 154 9.56e-37 129
Msa1319960 AT3G57230.4 46.154 143 76 1 2 144 13 154 9.56e-37 129
Msa1319960 AT4G11880.4 50.617 162 78 2 1 161 12 172 1.85e-36 128
Msa1319960 AT4G11880.1 50.617 162 78 2 1 161 12 172 1.85e-36 128
Msa1319960 AT3G30260.1 50.000 146 60 4 1 139 12 151 2.03e-36 129
Msa1319960 AT5G13790.2 49.057 159 73 2 1 157 12 164 3.50e-36 129
Msa1319960 AT2G14210.1 36.638 232 127 5 1 228 12 227 1.90e-35 126
Msa1319960 AT2G14210.2 36.638 232 127 5 1 228 12 227 2.34e-35 126
Msa1319960 AT5G13790.1 48.750 160 69 3 1 157 12 161 8.02e-35 125
Msa1319960 AT3G57230.2 47.015 134 70 1 2 135 13 145 1.55e-34 121
Msa1319960 AT4G37940.1 43.448 145 81 1 1 145 12 155 4.43e-34 122
Msa1319960 AT4G24540.1 40.291 206 115 4 1 201 12 214 5.03e-34 122
Msa1319960 AT2G22630.1 45.890 146 77 2 1 145 12 156 1.17e-33 121
Msa1319960 AT2G22630.2 45.890 146 77 2 1 145 12 156 1.17e-33 121
Msa1319960 AT5G51860.2 41.718 163 90 2 1 160 12 172 3.31e-33 119
Msa1319960 AT5G51860.1 41.975 162 89 2 1 159 12 171 7.38e-33 119
Msa1319960 AT5G51870.1 35.961 203 114 4 1 201 12 200 9.61e-32 115
Msa1319960 AT4G37940.4 43.919 148 81 2 1 147 12 158 1.42e-31 115
Msa1319960 AT4G37940.3 45.802 131 70 1 1 131 12 141 2.56e-31 114
Msa1319960 AT5G51870.3 41.772 158 89 2 1 156 22 178 5.43e-31 114
Msa1319960 AT5G51870.4 41.772 158 89 2 1 156 12 168 5.48e-31 114
Msa1319960 AT3G57390.3 41.341 179 96 4 1 170 12 190 2.83e-30 112
Msa1319960 AT3G57390.1 41.341 179 96 4 1 170 12 190 4.88e-30 112
Msa1319960 AT2G22540.3 45.342 161 80 3 1 157 12 168 6.54e-30 112
Msa1319960 AT2G22540.1 45.342 161 80 3 1 157 12 168 6.54e-30 112
Msa1319960 AT5G51870.2 43.066 137 75 2 1 135 12 147 6.49e-28 105
Msa1319960 AT5G51870.5 43.066 137 75 2 1 135 35 170 2.19e-27 104
Msa1319960 AT1G71692.1 37.561 205 106 6 1 194 12 205 3.00e-27 104
Msa1319960 AT5G10140.4 42.208 154 77 4 1 150 12 157 3.50e-27 103
Msa1319960 AT3G54340.1 38.824 170 83 3 1 161 12 169 5.04e-27 104
Msa1319960 AT2G22540.2 44.099 161 77 4 1 157 12 163 6.44e-27 103
Msa1319960 AT5G23260.2 39.873 158 90 2 1 156 12 166 6.93e-27 104
Msa1319960 AT5G23260.4 39.873 158 90 2 1 156 28 182 1.29e-26 103
Msa1319960 AT5G62165.14 60.241 83 29 1 1 83 12 90 1.56e-26 99.4
Msa1319960 AT5G20240.1 37.423 163 91 3 1 161 12 165 1.64e-26 102
Msa1319960 AT5G10140.2 42.553 141 72 3 1 140 12 144 7.22e-26 99.8
Msa1319960 AT5G10140.1 42.553 141 72 3 1 140 12 144 8.43e-26 100
Msa1319960 AT5G10140.3 42.553 141 72 3 1 140 12 144 1.18e-25 99.4
Msa1319960 AT5G20240.2 41.176 136 73 2 1 134 12 142 5.51e-25 96.7
Msa1319960 AT5G23260.1 39.241 158 86 3 1 156 28 177 2.11e-23 95.5
Msa1319960 AT5G23260.3 40.288 139 78 2 1 137 12 147 3.85e-23 94.4
Msa1319960 AT5G65070.1 34.197 193 117 4 1 192 12 195 3.40e-21 88.2
Msa1319960 AT5G65050.2 35.669 157 92 2 1 156 12 160 5.61e-21 87.0
Msa1319960 AT5G65080.3 39.490 157 83 4 1 156 19 164 6.71e-21 87.0
Msa1319960 AT5G65060.3 34.395 157 94 2 1 156 12 160 8.54e-21 87.0
Msa1319960 AT5G65060.1 34.395 157 94 2 1 156 12 160 1.15e-20 86.7
Msa1319960 AT5G65050.3 35.669 157 92 2 1 156 12 160 1.57e-20 86.3
Msa1319960 AT1G31140.1 39.860 143 71 4 1 135 12 147 5.67e-20 85.1
Msa1319960 AT1G31140.2 39.855 138 80 2 1 135 12 149 8.84e-20 84.7
Msa1319960 AT5G65050.1 35.862 145 84 2 1 144 12 148 1.14e-19 83.6
Msa1319960 AT5G65070.2 31.944 216 122 5 1 192 12 226 3.55e-19 83.6
Msa1319960 AT5G65050.5 36.306 157 80 3 1 156 12 149 5.18e-19 82.0
Msa1319960 AT1G77080.11 38.854 157 87 3 1 156 12 160 1.11e-18 80.9
Msa1319960 AT1G77080.4 38.854 157 87 3 1 156 12 160 1.99e-18 80.9
Msa1319960 AT1G77080.5 38.854 157 87 3 1 156 12 160 2.41e-18 80.1
Msa1319960 AT1G69120.3 45.714 105 55 2 53 156 3 106 2.83e-18 80.1
Msa1319960 AT5G65070.5 36.025 161 79 4 1 137 12 172 2.88e-18 80.5
Msa1319960 AT5G65080.2 38.028 142 80 3 1 142 19 152 3.72e-18 80.1
Msa1319960 AT5G65060.2 33.758 157 84 3 1 156 12 149 4.85e-18 79.3
Msa1319960 AT5G65070.4 37.956 137 76 3 1 136 12 140 5.87e-18 78.2
Msa1319960 AT1G77080.2 35.256 156 90 2 1 156 12 156 1.79e-17 78.2
Msa1319960 AT5G60910.2 37.615 109 68 0 53 161 3 111 1.20e-16 75.5
Msa1319960 AT5G65070.3 29.778 225 116 5 1 192 12 227 2.58e-16 75.9
Msa1319960 AT1G77080.12 35.172 145 83 2 1 145 12 145 2.88e-16 73.6
Msa1319960 AT1G22130.1 54.412 68 29 1 1 68 12 77 1.59e-15 75.1
Msa1319960 AT1G77080.8 33.702 181 90 3 1 156 12 187 2.22e-15 73.2
Msa1319960 AT1G77980.1 36.735 147 85 5 1 146 12 151 5.88e-15 73.2
Msa1319960 AT4G18960.3 30.556 180 104 5 53 229 66 227 6.00e-15 72.0
Msa1319960 AT4G18960.2 30.556 180 104 5 53 229 66 227 6.00e-15 72.0
Msa1319960 AT4G18960.4 33.028 109 73 0 53 161 66 174 2.50e-14 69.3
Msa1319960 AT1G01530.1 55.357 56 25 0 2 57 18 73 8.52e-14 68.9
Msa1319960 AT1G65360.1 35.052 97 60 1 5 98 21 117 3.29e-13 67.0
Msa1319960 AT4G36590.1 47.887 71 37 0 1 71 17 87 9.61e-13 66.2
Msa1319960 AT5G60440.1 51.724 58 28 0 1 58 17 74 1.13e-12 66.6
Msa1319960 AT2G34440.1 50.909 55 27 0 6 60 17 71 1.30e-12 64.3
Msa1319960 AT1G72350.1 56.364 55 22 1 6 60 58 110 2.19e-12 64.7
Msa1319960 AT1G77950.3 34.286 175 92 6 1 173 12 165 2.80e-12 65.1
Msa1319960 AT1G77950.2 34.286 175 92 6 1 173 12 165 2.80e-12 65.1
Msa1319960 AT1G77950.1 34.286 175 92 6 1 173 12 165 2.80e-12 65.1
Msa1319960 AT1G77950.4 34.286 175 92 6 1 173 12 165 2.80e-12 65.1
Msa1319960 AT2G24840.1 51.852 54 26 0 5 58 77 130 6.50e-12 63.9
Msa1319960 AT4G37435.1 65.854 41 14 0 6 46 17 57 2.08e-11 61.6
Msa1319960 AT3G66656.1 41.892 74 40 1 6 79 17 87 3.57e-11 60.5

Find 53 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTGCAGACACAAATTA+TGG 0.257056 8_4:-24006508 Msa1319960:intron
CATGTACCCTATTTGCAAAA+AGG 0.262872 8_4:+24005974 None:intergenic
ACAAATTATGGTTGAACAAT+TGG 0.292155 8_4:-24006496 Msa1319960:CDS
GAACAAGCAACTAAGGATTA+AGG 0.318226 8_4:-24006248 Msa1319960:intron
CGTGGCAAACTCTATGAATT+TGG 0.319871 8_4:-24010220 Msa1319960:CDS
CTCTATGAATTTGGAAGTGT+TGG 0.323540 8_4:-24010211 Msa1319960:CDS
GTCATTTCAGGCAGTTGCTT+GGG 0.333279 8_4:-24006837 Msa1319960:intron
ATATCCATACTCATATTCAT+AGG 0.359722 8_4:+24006008 None:intergenic
TGGAGCTCTAATTCAGTTGC+TGG 0.365559 8_4:-24006068 Msa1319960:CDS
CAACCCTATGAATATGAGTA+TGG 0.368330 8_4:-24006012 Msa1319960:CDS
TTGGTATCGTTCAATGGTTT+TGG 0.371876 8_4:+24008170 None:intergenic
TCTTGGACCTTTGAACATAA+AGG 0.389505 8_4:-24006809 Msa1319960:CDS
CAGTTGCTTGGGGAAGATCT+TGG 0.428496 8_4:-24006826 Msa1319960:CDS
AGGAGAGGGATTTAATCTTA+AGG 0.448952 8_4:-24006105 Msa1319960:CDS
TTAAGGCAATGGAAAGTTTG+TGG 0.456921 8_4:-24006088 Msa1319960:CDS
TGCAACTCCTTTATGTTCAA+AGG 0.461252 8_4:+24006802 None:intergenic
GAGACTTGAACAAGCAACTA+AGG 0.468260 8_4:-24006255 Msa1319960:CDS
ATGCTCTTGGAAACATTAGA+TGG 0.468413 8_4:+24005652 None:intergenic
GCACCGTTGGTATCGTTCAA+TGG 0.471712 8_4:+24008164 None:intergenic
CCTTCAGCTTAGAAACCTCT+TGG 0.471990 8_4:+24007371 None:intergenic
CCTGTGTGTCACAATCAATT+TGG 0.486260 8_4:+24008115 None:intergenic
CATACTCATATTCATAGGGT+TGG 0.487085 8_4:+24006013 None:intergenic
GGGATTTAATCTTAAGGCAA+TGG 0.487191 8_4:-24006099 Msa1319960:CDS
AATTGGAAGAGCTTCGCAAA+AGG 0.487962 8_4:-24006479 Msa1319960:CDS
GAATAGAGAACAAAATAAAC+CGG 0.490867 8_4:-24010342 None:intergenic
TGTCATTTCAGGCAGTTGCT+TGG 0.500941 8_4:-24006838 Msa1319960:intron
AGTCTCACAAGCCATGCTCT+TGG 0.503465 8_4:+24005639 None:intergenic
CACGGCTAGAGAAAATGATA+AGG 0.506200 8_4:+24010239 None:intergenic
TCTATGAATTTGGAAGTGTT+GGG 0.506329 8_4:-24010210 Msa1319960:intron
ATATTCATAGGGTTGGTTTG+AGG 0.512979 8_4:+24006020 None:intergenic
TTGTGAGACTAACTTCATGC+AGG 0.528929 8_4:-24005626 Msa1319960:CDS
ATTGGAAGAGCTTCGCAAAA+GGG 0.532341 8_4:-24006478 Msa1319960:intron
ATCTAATGTTTCCAAGAGCA+TGG 0.544048 8_4:-24005650 Msa1319960:CDS
ACGGCTAGAGAAAATGATAA+GGG 0.547854 8_4:+24010240 None:intergenic
AGCACAAGCTAGGCAAAGAA+AGG 0.555280 8_4:-24006749 Msa1319960:intron
CAAAGTATGAATCTCTTCAA+AGG 0.555360 8_4:-24007348 Msa1319960:CDS
AGAGAACAAAATAAACCGGC+AGG 0.560471 8_4:-24010338 Msa1319960:CDS
TATCCATACTCATATTCATA+GGG 0.561894 8_4:+24006009 None:intergenic
GAGGATTAAATGAGCACCGT+TGG 0.567469 8_4:+24008151 None:intergenic
CCAAGAGGTTTCTAAGCTGA+AGG 0.572937 8_4:-24007371 Msa1319960:CDS
TCATTTCAGGCAGTTGCTTG+GGG 0.587356 8_4:-24006836 Msa1319960:intron
AAGGTGCATTAGCACAAGCT+AGG 0.590577 8_4:-24006759 Msa1319960:CDS
GTTGGTTTGAGGTGTCTGAA+AGG 0.598161 8_4:+24006031 None:intergenic
ATTTGGTGGTCATCTTGCTG+AGG 0.603360 8_4:+24008132 None:intergenic
CTTGAACATACTGATACTGT+TGG 0.604529 8_4:+24005680 None:intergenic
AGACTAACTTCATGCAGGGA+TGG 0.615060 8_4:-24005621 Msa1319960:CDS
CAAGCAGAGTTGGTACCAAG+AGG 0.621451 8_4:-24007386 Msa1319960:intron
CAAATTCATAGAGTTTGCCA+CGG 0.640343 8_4:+24010221 None:intergenic
GTGTGTCACAATCAATTTGG+TGG 0.647829 8_4:+24008118 None:intergenic
TGTGAGACTAACTTCATGCA+GGG 0.652522 8_4:-24005625 Msa1319960:CDS
AATCTCTTCAAAGGACTCAG+AGG 0.660385 8_4:-24007339 Msa1319960:intron
CCAAATTGATTGTGACACAC+AGG 0.672500 8_4:-24008115 Msa1319960:intron
AAACCATTGAACGATACCAA+CGG 0.680528 8_4:-24008167 Msa1319960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTTCAAAAAATTAATAAA+TGG + chr8_4:24005804-24005823 None:intergenic 10.0%
!!! TTTTATTTTGATTTTTTTAG+GGG - chr8_4:24006281-24006300 Msa1319960:intron 10.0%
!!! AATTATTTAAAACATGATTT+TGG + chr8_4:24006700-24006719 None:intergenic 10.0%
!!! AGTTCATAATTTTATTTTAT+AGG - chr8_4:24008496-24008515 Msa1319960:intron 10.0%
!!! CTTAGTTTTTTTTTTTTTTT+AGG - chr8_4:24008679-24008698 Msa1319960:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr8_4:24008814-24008833 Msa1319960:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr8_4:24008815-24008834 Msa1319960:intron 10.0%
!!! TTAACTAATAAATTTTTACT+TGG + chr8_4:24009584-24009603 None:intergenic 10.0%
!!! CTAAAAAAAATAATTAGTTT+TGG - chr8_4:24010158-24010177 Msa1319960:intron 10.0%
!!! TTTCTTATAGTTTTGTATTT+TGG - chr8_4:24005889-24005908 Msa1319960:intron 15.0%
!!! TTCTTATAGTTTTGTATTTT+GGG - chr8_4:24005890-24005909 Msa1319960:intron 15.0%
!! AGATAAAGAAAAAGAAAAAA+TGG + chr8_4:24006117-24006136 None:intergenic 15.0%
!!! AAAAAATTATTTTGTCATTG+TGG + chr8_4:24006204-24006223 None:intergenic 15.0%
!!! TTTTTATTAATTGTGGTTTT+AGG - chr8_4:24006221-24006240 Msa1319960:intron 15.0%
!!! TTTTATTAATTGTGGTTTTA+GGG - chr8_4:24006222-24006241 Msa1319960:intron 15.0%
!! AAAGATAATGTAATGTTTAA+AGG - chr8_4:24006447-24006466 Msa1319960:intron 15.0%
!! AAAAGATTAAACGTTTAAAA+GGG + chr8_4:24006794-24006813 None:intergenic 15.0%
!!! TTATTAGAGTATTTTTTTAG+TGG + chr8_4:24006837-24006856 None:intergenic 15.0%
!!! TTTTTTTTTCTTCTTTCATT+AGG + chr8_4:24007025-24007044 None:intergenic 15.0%
!!! AATGAAAATTAGTCTTAAAT+TGG + chr8_4:24007156-24007175 None:intergenic 15.0%
!!! ACTAATTTTCATTCAAAAAA+AGG - chr8_4:24007163-24007182 Msa1319960:intron 15.0%
!!! AAAAGAAATATTCTTTTCAT+AGG + chr8_4:24007461-24007480 None:intergenic 15.0%
!! TATGTACATTCTTAATTTAT+AGG - chr8_4:24007624-24007643 Msa1319960:intron 15.0%
!!! GAGAAAAAAAAAATTAGTTT+GGG + chr8_4:24007701-24007720 None:intergenic 15.0%
!! TGAGAAAAAAAAAATTAGTT+TGG + chr8_4:24007702-24007721 None:intergenic 15.0%
!! AAAAAAAACTTGAGAAATTT+GGG + chr8_4:24008217-24008236 None:intergenic 15.0%
!! AAAAAAAAACTTGAGAAATT+TGG + chr8_4:24008218-24008237 None:intergenic 15.0%
!!! AAGTTTTTTTTTTTCGTTTT+AGG - chr8_4:24008226-24008245 Msa1319960:intron 15.0%
!!! TTGTACATTATTTTTGTTTT+AGG - chr8_4:24008330-24008349 Msa1319960:intron 15.0%
!!! TGTACATTATTTTTGTTTTA+GGG - chr8_4:24008331-24008350 Msa1319960:intron 15.0%
!!! CAATTTATATAATTCTGTTT+TGG - chr8_4:24008543-24008562 Msa1319960:intron 15.0%
!! AGTTCTATATTTATGTAAAA+GGG + chr8_4:24008661-24008680 None:intergenic 15.0%
!! AAGTTCTATATTTATGTAAA+AGG + chr8_4:24008662-24008681 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr8_4:24008816-24008835 Msa1319960:intron 15.0%
!! AGTATTAATTAGAGTTATAA+AGG - chr8_4:24008874-24008893 Msa1319960:intron 15.0%
!! GTATTAATTAGAGTTATAAA+GGG - chr8_4:24008875-24008894 Msa1319960:intron 15.0%
!! TATTAATTAGAGTTATAAAG+GGG - chr8_4:24008876-24008895 Msa1319960:intron 15.0%
!!! GTCTTTTATATACATATATA+TGG - chr8_4:24009259-24009278 Msa1319960:intron 15.0%
!!! TTTTATATACATATATATGG+TGG - chr8_4:24009262-24009281 Msa1319960:intron 15.0%
!! TATTAAAATAAAGTTCAATG+TGG - chr8_4:24009364-24009383 Msa1319960:intron 15.0%
!! GATTAAGGTTAAATATATAA+AGG - chr8_4:24009719-24009738 Msa1319960:intron 15.0%
!! AGATAATTAATAGAGAAATT+AGG + chr8_4:24009801-24009820 None:intergenic 15.0%
!! TAATTAATTAGATGAGTATA+TGG - chr8_4:24010048-24010067 Msa1319960:intron 15.0%
!!! TTTTTTTTTTTAGGGAATTT+TGG - chr8_4:24010188-24010207 Msa1319960:intron 15.0%
!!! TTTTTTTTTTAGGGAATTTT+GGG - chr8_4:24010189-24010208 Msa1319960:intron 15.0%
!!! TTTTATTGTCTATTTTTGTG+AGG - chr8_4:24005829-24005848 Msa1319960:intron 20.0%
!! AAATGATTCTATTAACCATT+GGG + chr8_4:24005862-24005881 None:intergenic 20.0%
!! AAAATGATTCTATTAACCAT+TGG + chr8_4:24005863-24005882 None:intergenic 20.0%
!! CATATGTAAATTATGAGTTA+TGG - chr8_4:24006337-24006356 Msa1319960:intron 20.0%
!! TAAACATTACATTATCTTTC+AGG + chr8_4:24006446-24006465 None:intergenic 20.0%
!! AGAAAAAAGAAAAACAGAAA+AGG - chr8_4:24006532-24006551 Msa1319960:intron 20.0%
!! TTAATTCTCACAACAAAATA+TGG - chr8_4:24006745-24006764 Msa1319960:intron 20.0%
!! CAAAAGATTAAACGTTTAAA+AGG + chr8_4:24006795-24006814 None:intergenic 20.0%
!!! CTTTTAAACGTTTAATCTTT+TGG - chr8_4:24006793-24006812 Msa1319960:CDS 20.0%
!!! TTACTTTTTAGTTCAATTTG+AGG - chr8_4:24006917-24006936 Msa1319960:intron 20.0%
!! TAGGAAAATTCAAATATTTC+TGG + chr8_4:24007590-24007609 None:intergenic 20.0%
!! ACATAATAAAAGAACAAACT+AGG + chr8_4:24007609-24007628 None:intergenic 20.0%
!!! CTCACTAATACTTTTTTTAA+TGG - chr8_4:24007718-24007737 Msa1319960:intron 20.0%
!! AAGTTATGTGATTGTTAATT+TGG + chr8_4:24008046-24008065 None:intergenic 20.0%
!!! TGTAAAGTATTTTCGTTTTA+GGG + chr8_4:24008159-24008178 None:intergenic 20.0%
!!! TTGTAAAGTATTTTCGTTTT+AGG + chr8_4:24008160-24008179 None:intergenic 20.0%
!! AAATAATACTCATAGTATGT+GGG + chr8_4:24008185-24008204 None:intergenic 20.0%
!! TAAATAATACTCATAGTATG+TGG + chr8_4:24008186-24008205 None:intergenic 20.0%
!!! GTTTTTTTTTTGTCATCTAA+TGG + chr8_4:24008262-24008281 None:intergenic 20.0%
!! AAAAGCAATAAAATTAGCAA+CGG + chr8_4:24008378-24008397 None:intergenic 20.0%
!!! ATTGCTTTTTCAACTTTTTT+CGG - chr8_4:24008389-24008408 Msa1319960:intron 20.0%
!! GTTCTATATTTATGTAAAAG+GGG + chr8_4:24008660-24008679 None:intergenic 20.0%
!! AAAAGTGGAATATATTGAAT+TGG - chr8_4:24008900-24008919 Msa1319960:intron 20.0%
!! AAAGTGGAATATATTGAATT+GGG - chr8_4:24008901-24008920 Msa1319960:intron 20.0%
!!! TTTTTTTCAATCATTGTTAC+TGG + chr8_4:24009050-24009069 None:intergenic 20.0%
!! TATATGTATATAAAAGACCA+TGG + chr8_4:24009257-24009276 None:intergenic 20.0%
!!! TGAATTCATGAAAATTTGTT+TGG - chr8_4:24009532-24009551 Msa1319960:intron 20.0%
!! AAAAAGCCATATATGTATAA+TGG + chr8_4:24009753-24009772 None:intergenic 20.0%
!! AAATATATGCAAAAAGTTGA+AGG + chr8_4:24010010-24010029 None:intergenic 20.0%
!! CATCTAATTAATTATAAGTG+TGG + chr8_4:24010042-24010061 None:intergenic 20.0%
!!! GGTTAGAGTTTTTTTTTTTA+GGG - chr8_4:24010180-24010199 Msa1319960:intron 20.0%
! ACTTTCTCAAAAAGAAGAAA+TGG - chr8_4:24005639-24005658 Msa1319960:CDS 25.0%
!! AACGTTTTCATCAACAAAAA+AGG + chr8_4:24006405-24006424 None:intergenic 25.0%
! AATAAAGCTGGAAATAAAGA+TGG + chr8_4:24006870-24006889 None:intergenic 25.0%
!!! TTATTTCCAGCTTTATTACA+AGG - chr8_4:24006873-24006892 Msa1319960:intron 25.0%
!!! GTATGATGATTTTGATGATA+AGG - chr8_4:24007078-24007097 Msa1319960:intron 25.0%
! AATAGTGAAGCTGATTAATT+TGG + chr8_4:24007226-24007245 None:intergenic 25.0%
! TTGAAACTCATAACACATTA+TGG - chr8_4:24007288-24007307 Msa1319960:intron 25.0%
! TCGTAGAAAAACATATATCT+AGG - chr8_4:24007347-24007366 Msa1319960:CDS 25.0%
!!! TAAGTCAGTATTTTGAGTAA+AGG - chr8_4:24007424-24007443 Msa1319960:intron 25.0%
!!! TTCAAATATTTCTGGATTAG+TGG + chr8_4:24007582-24007601 None:intergenic 25.0%
! TACATGCATGTTTAATACTA+CGG - chr8_4:24007965-24007984 Msa1319960:intron 25.0%
!!! TGGTTTTGTTGAAATTATAG+TGG - chr8_4:24007988-24008007 Msa1319960:intron 25.0%
!! TGATTGTTAATTTGGTAAGA+TGG + chr8_4:24008038-24008057 None:intergenic 25.0%
!!! TTTTTTTTTCGTTTTAGGAG+CGG - chr8_4:24008231-24008250 Msa1319960:intron 25.0%
! AAAAAAAAAACTCGAGAAAG+TGG - chr8_4:24008271-24008290 Msa1319960:intron 25.0%
! AAAAAAAAACTCGAGAAAGT+GGG - chr8_4:24008272-24008291 Msa1319960:intron 25.0%
! AAATAACACTCATAGTATGT+TGG - chr8_4:24008305-24008324 Msa1319960:intron 25.0%
!!! CATTATTTTTGTTTTAGGGT+CGG - chr8_4:24008335-24008354 Msa1319960:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG - chr8_4:24008947-24008966 Msa1319960:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG - chr8_4:24008948-24008967 Msa1319960:intron 25.0%
! ACAAATTATGGTTGAACAAT+TGG - chr8_4:24009456-24009475 Msa1319960:intron 25.0%
!! AACAATTGAAGTGTTTAACT+TGG + chr8_4:24009619-24009638 None:intergenic 25.0%
!! TTCAATTTCAACCATTTTGT+AGG - chr8_4:24009662-24009681 Msa1319960:intron 25.0%
! TCTGTACCATTATACATATA+TGG - chr8_4:24009744-24009763 Msa1319960:intron 25.0%
! TATCCATACTCATATTCATA+GGG + chr8_4:24009946-24009965 None:intergenic 25.0%
! ATATCCATACTCATATTCAT+AGG + chr8_4:24009947-24009966 None:intergenic 25.0%
!!! GGGTTAGAGTTTTTTTTTTT+AGG - chr8_4:24010179-24010198 Msa1319960:intron 25.0%
!!! TTTTGGGTTAGAGTTTTTAA+TGG - chr8_4:24010205-24010224 Msa1319960:intron 25.0%
!! CTAATGTTAACCTCTTTTAT+TGG - chr8_4:24010242-24010261 Msa1319960:CDS 25.0%
!! TCTATGAATTTGGAAGTGTT+GGG - chr8_4:24005742-24005761 Msa1319960:intron 30.0%
TTCTATTAACCATTGGGATT+TGG + chr8_4:24005856-24005875 None:intergenic 30.0%
! GAAACTGATTCAAAGAAGAA+AGG + chr8_4:24005964-24005983 None:intergenic 30.0%
ATCAGTTTCTTTCACCAATA+TGG - chr8_4:24005975-24005994 Msa1319960:intron 30.0%
! AAAAGCATACAATTCAGTTG+TGG + chr8_4:24006030-24006049 None:intergenic 30.0%
TTAACATGTCGATCTATGTT+TGG + chr8_4:24006369-24006388 None:intergenic 30.0%
! TTATCTTTCAGGTGTTGTAA+AGG + chr8_4:24006435-24006454 None:intergenic 30.0%
AGGTTTCAGCTTAGAAATAA+TGG - chr8_4:24006467-24006486 Msa1319960:intron 30.0%
CTGAGAAACAAGAAATATCT+AGG + chr8_4:24006503-24006522 None:intergenic 30.0%
TCATCAAAATCATCATACTG+AGG + chr8_4:24007076-24007095 None:intergenic 30.0%
CTTAAATTGGTCCAAAGAAA+GGG + chr8_4:24007143-24007162 None:intergenic 30.0%
TCTTAAATTGGTCCAAAGAA+AGG + chr8_4:24007144-24007163 None:intergenic 30.0%
AAACTCATAACACATTATGG+TGG - chr8_4:24007291-24007310 Msa1319960:intron 30.0%
TCTACGAAAATTATATGCCA+TGG + chr8_4:24007334-24007353 None:intergenic 30.0%
AAATCCTTGTGGTTGAAATT+TGG - chr8_4:24007391-24007410 Msa1319960:intron 30.0%
AATCCTTGTGGTTGAAATTT+GGG - chr8_4:24007392-24007411 Msa1319960:intron 30.0%
! GGATTAGTGGAATTTATATG+TGG + chr8_4:24007569-24007588 None:intergenic 30.0%
CATGTAACTTCACAAAATCA+CGG + chr8_4:24007951-24007970 None:intergenic 30.0%
! TGTTAATTTGGTAAGATGGT+GGG + chr8_4:24008034-24008053 None:intergenic 30.0%
! TTGTTAATTTGGTAAGATGG+TGG + chr8_4:24008035-24008054 None:intergenic 30.0%
AGGGTTGGAAAAAAAGATTA+CGG + chr8_4:24008140-24008159 None:intergenic 30.0%
!!! AAGTATTTTCGTTTTAGGGT+TGG + chr8_4:24008155-24008174 None:intergenic 30.0%
!!! TTTTTTTTCGTTTTAGGAGC+GGG - chr8_4:24008232-24008251 Msa1319960:intron 30.0%
AAAAAAAACTCGAGAAAGTG+GGG - chr8_4:24008273-24008292 Msa1319960:intron 30.0%
CAAAGTATGAATCTCTTCAA+AGG - chr8_4:24008604-24008623 Msa1319960:intron 30.0%
AGTAAATGACTCAGTTAATC+CGG - chr8_4:24008983-24009002 Msa1319960:intron 30.0%
CCTGAAATGACATTACATAT+TGG + chr8_4:24009106-24009125 None:intergenic 30.0%
! CCAATATGTAATGTCATTTC+AGG - chr8_4:24009103-24009122 Msa1319960:intron 30.0%
AATCTTGAAAAACAGCTTGA+AGG - chr8_4:24009174-24009193 Msa1319960:intron 30.0%
! TGTGATCCAATTTAGAACAA+TGG - chr8_4:24009398-24009417 Msa1319960:intron 30.0%
! GATCAACCATTGTTCTAAAT+TGG + chr8_4:24009407-24009426 None:intergenic 30.0%
TCAATTGCAGACACAAATTA+TGG - chr8_4:24009444-24009463 Msa1319960:intron 30.0%
ATGTACCCTATTTGCAAAAA+GGG + chr8_4:24009980-24009999 None:intergenic 30.0%
!! TTTTTGAGAAAGTTACCTGC+CGG + chr8_4:24005632-24005651 None:intergenic 35.0%
ACGGCTAGAGAAAATGATAA+GGG + chr8_4:24005715-24005734 None:intergenic 35.0%
CAAATTCATAGAGTTTGCCA+CGG + chr8_4:24005734-24005753 None:intergenic 35.0%
! CTCTATGAATTTGGAAGTGT+TGG - chr8_4:24005741-24005760 Msa1319960:intron 35.0%
TCTTTCACCAATATGGTTAC+TGG - chr8_4:24005982-24006001 Msa1319960:CDS 35.0%
CAGAAAACCAGTAACCATAT+TGG + chr8_4:24005992-24006011 None:intergenic 35.0%
TGTACTGTTGTGTAAGATCT+AGG - chr8_4:24006667-24006686 Msa1319960:intron 35.0%
GTACTGTTGTGTAAGATCTA+GGG - chr8_4:24006668-24006687 Msa1319960:intron 35.0%
!! TTTCCAGCTTTATTACAAGG+TGG - chr8_4:24006876-24006895 Msa1319960:intron 35.0%
! AAGGGAAGGAAACTTTTGAA+TGG + chr8_4:24007125-24007144 None:intergenic 35.0%
AAAGTTTCCTTCCCTTTCTT+TGG - chr8_4:24007129-24007148 Msa1319960:intron 35.0%
TCAACCACAAGGATTTCATA+GGG + chr8_4:24007387-24007406 None:intergenic 35.0%
TTCAACCACAAGGATTTCAT+AGG + chr8_4:24007388-24007407 None:intergenic 35.0%
CAAGAGTAAAGAAACACAGT+AGG - chr8_4:24007522-24007541 Msa1319960:intron 35.0%
! TTGGTATCGTTCAATGGTTT+TGG + chr8_4:24007785-24007804 None:intergenic 35.0%
AAACCATTGAACGATACCAA+CGG - chr8_4:24007785-24007804 Msa1319960:intron 35.0%
ATGCATGTTTAATACTACGG+TGG - chr8_4:24007968-24007987 Msa1319960:intron 35.0%
ATAAGTGTGAAATGAGCCAA+GGG + chr8_4:24008794-24008813 None:intergenic 35.0%
AATAAGTGTGAAATGAGCCA+AGG + chr8_4:24008795-24008814 None:intergenic 35.0%
GAGTTATAAAGGGGAAAAAG+TGG - chr8_4:24008885-24008904 Msa1319960:intron 35.0%
GTAAATGACTCAGTTAATCC+GGG - chr8_4:24008984-24009003 Msa1319960:intron 35.0%
TCTTGGACCTTTGAACATAA+AGG - chr8_4:24009143-24009162 Msa1319960:intron 35.0%
TGCAACTCCTTTATGTTCAA+AGG + chr8_4:24009153-24009172 None:intergenic 35.0%
CGCATCTACATATATATCCA+TGG - chr8_4:24009237-24009256 Msa1319960:intron 35.0%
TAGATGACGTTCCTACAAAA+TGG + chr8_4:24009676-24009695 None:intergenic 35.0%
! ATTTTGTAGGAACGTCATCT+AGG - chr8_4:24009675-24009694 Msa1319960:intron 35.0%
GAACAAGCAACTAAGGATTA+AGG - chr8_4:24009704-24009723 Msa1319960:intron 35.0%
! AAACTCCATTTTCAGCTTGA+AGG - chr8_4:24009827-24009846 Msa1319960:intron 35.0%
AGGAGAGGGATTTAATCTTA+AGG - chr8_4:24009847-24009866 Msa1319960:intron 35.0%
GGGATTTAATCTTAAGGCAA+TGG - chr8_4:24009853-24009872 Msa1319960:intron 35.0%
TTAAGGCAATGGAAAGTTTG+TGG - chr8_4:24009864-24009883 Msa1319960:intron 35.0%
!! ATATTCATAGGGTTGGTTTG+AGG + chr8_4:24009935-24009954 None:intergenic 35.0%
CATACTCATATTCATAGGGT+TGG + chr8_4:24009942-24009961 None:intergenic 35.0%
CAACCCTATGAATATGAGTA+TGG - chr8_4:24009940-24009959 Msa1319960:intron 35.0%
! CAGAACCCTTTTTGCAAATA+GGG - chr8_4:24009972-24009991 Msa1319960:intron 35.0%
CATGTACCCTATTTGCAAAA+AGG + chr8_4:24009981-24010000 None:intergenic 35.0%
TGGTATCTGTCCAATAAAAG+AGG + chr8_4:24010255-24010274 None:intergenic 35.0%
CTTGAACATACTGATACTGT+TGG + chr8_4:24010275-24010294 None:intergenic 35.0%
ATGCTCTTGGAAACATTAGA+TGG + chr8_4:24010303-24010322 None:intergenic 35.0%
ATCTAATGTTTCCAAGAGCA+TGG - chr8_4:24010302-24010321 Msa1319960:CDS 35.0%
CACGGCTAGAGAAAATGATA+AGG + chr8_4:24005716-24005735 None:intergenic 40.0%
! CTTATCATTTTCTCTAGCCG+TGG - chr8_4:24005714-24005733 Msa1319960:intron 40.0%
CGTGGCAAACTCTATGAATT+TGG - chr8_4:24005732-24005751 Msa1319960:intron 40.0%
! TCCTTTTCTGGATCAGTTGA+TGG - chr8_4:24006169-24006188 Msa1319960:intron 40.0%
TCCATCAACTGATCCAGAAA+AGG + chr8_4:24006173-24006192 None:intergenic 40.0%
!! CAGCTTTATTACAAGGTGGA+GGG - chr8_4:24006880-24006899 Msa1319960:intron 40.0%
! AAGGTGGAGGGTTTAGAATT+TGG - chr8_4:24006892-24006911 Msa1319960:intron 40.0%
AATTGGTCCAAAGAAAGGGA+AGG + chr8_4:24007139-24007158 None:intergenic 40.0%
! TTATGGTGGTGTGAATGTGT+TGG - chr8_4:24007305-24007324 Msa1319960:intron 40.0%
GAATCCCTATGAAATCCTTG+TGG - chr8_4:24007380-24007399 Msa1319960:CDS 40.0%
TCACCCAAATTTCAACCACA+AGG + chr8_4:24007398-24007417 None:intergenic 40.0%
AAAGAAACACAGTAGGTACC+TGG - chr8_4:24007529-24007548 Msa1319960:intron 40.0%
AAGAAACACAGTAGGTACCT+GGG - chr8_4:24007530-24007549 Msa1319960:intron 40.0%
GTGTGTCACAATCAATTTGG+TGG + chr8_4:24007837-24007856 None:intergenic 40.0%
CCTGTGTGTCACAATCAATT+TGG + chr8_4:24007840-24007859 None:intergenic 40.0%
CCAAATTGATTGTGACACAC+AGG - chr8_4:24007837-24007856 Msa1319960:intron 40.0%
GTAACTTCACAAAATCACGG+TGG + chr8_4:24007948-24007967 None:intergenic 40.0%
TCTCTCTAGTGCATTGAGAT+TGG + chr8_4:24008091-24008110 None:intergenic 40.0%
AATCTCTTCAAAGGACTCAG+AGG - chr8_4:24008613-24008632 Msa1319960:intron 40.0%
AGCCAAGGGCTCAATTAATT+CGG + chr8_4:24008780-24008799 None:intergenic 40.0%
AATTGGAAGAGCTTCGCAAA+AGG - chr8_4:24009473-24009492 Msa1319960:intron 40.0%
ATTGGAAGAGCTTCGCAAAA+GGG - chr8_4:24009474-24009493 Msa1319960:intron 40.0%
GAGACTTGAACAAGCAACTA+AGG - chr8_4:24009697-24009716 Msa1319960:intron 40.0%
! CATTTTCAGCTTGAAGGAGA+GGG - chr8_4:24009833-24009852 Msa1319960:intron 40.0%
TTTGCAAAAAGGGTTCTGCT+TGG + chr8_4:24009970-24009989 None:intergenic 40.0%
! GCAGAACCCTTTTTGCAAAT+AGG - chr8_4:24009971-24009990 Msa1319960:intron 40.0%
TTGTGAGACTAACTTCATGC+AGG - chr8_4:24010326-24010345 Msa1319960:CDS 40.0%
TGTGAGACTAACTTCATGCA+GGG - chr8_4:24010327-24010346 Msa1319960:CDS 40.0%
TTGTGAGGTCCAAATCCCAA+TGG - chr8_4:24005844-24005863 Msa1319960:intron 45.0%
CCAGAAAAGGAGAGAGATGA+GGG + chr8_4:24006160-24006179 None:intergenic 45.0%
TCCAGAAAAGGAGAGAGATG+AGG + chr8_4:24006161-24006180 None:intergenic 45.0%
CCTCCACCTTGTAATAAAGC+TGG + chr8_4:24006882-24006901 None:intergenic 45.0%
!! CCAGCTTTATTACAAGGTGG+AGG - chr8_4:24006879-24006898 Msa1319960:intron 45.0%
!! TGTGAATGTGTTGGCTTCCA+TGG - chr8_4:24007314-24007333 Msa1319960:intron 45.0%
GTGGACAAAATTACACACCC+AGG + chr8_4:24007550-24007569 None:intergenic 45.0%
! GAGGATTAAATGAGCACCGT+TGG + chr8_4:24007804-24007823 None:intergenic 45.0%
! ATTTGGTGGTCATCTTGCTG+AGG + chr8_4:24007823-24007842 None:intergenic 45.0%
!!! TCTGTTTTGGCAAGCAGAGT+TGG - chr8_4:24008556-24008575 Msa1319960:intron 45.0%
CCTTCAGCTTAGAAACCTCT+TGG + chr8_4:24008584-24008603 None:intergenic 45.0%
CCAAGAGGTTTCTAAGCTGA+AGG - chr8_4:24008581-24008600 Msa1319960:intron 45.0%
CTCAATTAATTCGGGACGGA+GGG + chr8_4:24008771-24008790 None:intergenic 45.0%
AGGGCTCAATTAATTCGGGA+CGG + chr8_4:24008775-24008794 None:intergenic 45.0%
TCCCGAATTAATTGAGCCCT+TGG - chr8_4:24008775-24008794 Msa1319960:intron 45.0%
GCCAAGGGCTCAATTAATTC+GGG + chr8_4:24008779-24008798 None:intergenic 45.0%
ATGACTCAGTTAATCCGGGA+CGG - chr8_4:24008988-24009007 Msa1319960:intron 45.0%
! TGTCATTTCAGGCAGTTGCT+TGG - chr8_4:24009114-24009133 Msa1319960:intron 45.0%
GTCATTTCAGGCAGTTGCTT+GGG - chr8_4:24009115-24009134 Msa1319960:intron 45.0%
TCATTTCAGGCAGTTGCTTG+GGG - chr8_4:24009116-24009135 Msa1319960:intron 45.0%
AAGGTGCATTAGCACAAGCT+AGG - chr8_4:24009193-24009212 Msa1319960:intron 45.0%
AGCACAAGCTAGGCAAAGAA+AGG - chr8_4:24009203-24009222 Msa1319960:intron 45.0%
CCTCTCCTTCAAGCTGAAAA+TGG + chr8_4:24009835-24009854 None:intergenic 45.0%
! CCATTTTCAGCTTGAAGGAG+AGG - chr8_4:24009832-24009851 Msa1319960:intron 45.0%
! TGGAGCTCTAATTCAGTTGC+TGG - chr8_4:24009884-24009903 Msa1319960:intron 45.0%
!! GTTGGTTTGAGGTGTCTGAA+AGG + chr8_4:24009924-24009943 None:intergenic 45.0%
AGACTAACTTCATGCAGGGA+TGG - chr8_4:24010331-24010350 Msa1319960:CDS 45.0%
!!! ATAATTTTTTTTATTAATTG+TGG - chr8_4:24006214-24006233 Msa1319960:intron 5.0%
!!! TTTTTTATTTTGATTTTTTT+AGG - chr8_4:24006279-24006298 Msa1319960:intron 5.0%
!!! TTTTTATTTTGATTTTTTTA+GGG - chr8_4:24006280-24006299 Msa1319960:intron 5.0%
!! AATAATTAAAATAAAATCAT+AGG + chr8_4:24009559-24009578 None:intergenic 5.0%
!!! TAAAAAAAATAATTAGTTTT+GGG - chr8_4:24010159-24010178 Msa1319960:intron 5.0%
! CCCTCATCTCTCTCCTTTTC+TGG - chr8_4:24006157-24006176 Msa1319960:intron 50.0%
GCACCGTTGGTATCGTTCAA+TGG + chr8_4:24007791-24007810 None:intergenic 50.0%
!! CAAGCAGAGTTGGTACCAAG+AGG - chr8_4:24008566-24008585 Msa1319960:intron 50.0%
GCTCAATTAATTCGGGACGG+AGG + chr8_4:24008772-24008791 None:intergenic 50.0%
AACATATACTCCCTCCGTCC+CGG + chr8_4:24009005-24009024 None:intergenic 50.0%
CAGTTGCTTGGGGAAGATCT+TGG - chr8_4:24009126-24009145 Msa1319960:intron 50.0%
AGTCTCACAAGCCATGCTCT+TGG + chr8_4:24010316-24010335 None:intergenic 50.0%
ACTCAGTTAATCCGGGACGG+AGG - chr8_4:24008991-24009010 Msa1319960:intron 55.0%
CTCAGTTAATCCGGGACGGA+GGG - chr8_4:24008992-24009011 Msa1319960:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 24005615 24010359 24005615 ID=Msa1319960;Name=Msa1319960
chr8_4 mRNA 24005615 24010359 24005615 ID=Msa1319960-mRNA-1;Parent=Msa1319960;Name=Msa1319960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.75|1|1|0.75|8|0|240
chr8_4 exon 24005615 24005705 24005615 ID=Msa1319960-mRNA-1:exon:8314;Parent=Msa1319960-mRNA-1
chr8_4 exon 24005981 24006132 24005981 ID=Msa1319960-mRNA-1:exon:8313;Parent=Msa1319960-mRNA-1
chr8_4 exon 24006249 24006290 24006249 ID=Msa1319960-mRNA-1:exon:8312;Parent=Msa1319960-mRNA-1
chr8_4 exon 24006479 24006520 24006479 ID=Msa1319960-mRNA-1:exon:8311;Parent=Msa1319960-mRNA-1
chr8_4 exon 24006750 24006849 24006750 ID=Msa1319960-mRNA-1:exon:8310;Parent=Msa1319960-mRNA-1
chr8_4 exon 24007340 24007401 24007340 ID=Msa1319960-mRNA-1:exon:8309;Parent=Msa1319960-mRNA-1
chr8_4 exon 24008116 24008197 24008116 ID=Msa1319960-mRNA-1:exon:8308;Parent=Msa1319960-mRNA-1
chr8_4 exon 24010211 24010359 24010211 ID=Msa1319960-mRNA-1:exon:8307;Parent=Msa1319960-mRNA-1
chr8_4 CDS 24010211 24010359 24010211 ID=Msa1319960-mRNA-1:cds;Parent=Msa1319960-mRNA-1
chr8_4 CDS 24008116 24008197 24008116 ID=Msa1319960-mRNA-1:cds;Parent=Msa1319960-mRNA-1
chr8_4 CDS 24007340 24007401 24007340 ID=Msa1319960-mRNA-1:cds;Parent=Msa1319960-mRNA-1
chr8_4 CDS 24006750 24006849 24006750 ID=Msa1319960-mRNA-1:cds;Parent=Msa1319960-mRNA-1
chr8_4 CDS 24006479 24006520 24006479 ID=Msa1319960-mRNA-1:cds;Parent=Msa1319960-mRNA-1
chr8_4 CDS 24006249 24006290 24006249 ID=Msa1319960-mRNA-1:cds;Parent=Msa1319960-mRNA-1
chr8_4 CDS 24005981 24006132 24005981 ID=Msa1319960-mRNA-1:cds;Parent=Msa1319960-mRNA-1
chr8_4 CDS 24005615 24005705 24005615 ID=Msa1319960-mRNA-1:cds;Parent=Msa1319960-mRNA-1
Gene Sequence

>Msa1319960

GAGAACAAAATAAACCGGCAGGTAACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAACTGTCTGTTCTCTGTGATGCTGAAGTTGCCCTTATCATTTTCTCTAGCCGTGGCAAACTCTATGAATTTGGAAGTGTTGGAACTACCAAAACCATTGAACGATACCAACGGTGCTCATTTAATCCTCAGCAAGATGACCACCAAATTGATTGTGACACACAGAGTTGGTACCAAGAGGTTTCTAAGCTGAAGGCAAAGTATGAATCTCTTCAAAGGACTCAGAGGCAGTTGCTTGGGGAAGATCTTGGACCTTTGAACATAAAGGAGTTGCAGAATCTTGAAAAACAGCTTGAAGGTGCATTAGCACAAGCTAGGCAAAGAAAGACACAAATTATGGTTGAACAATTGGAAGAGCTTCGCAAAAGGGAACGTCATCTAGGAGACTTGAACAAGCAACTAAGGATTAAGCTTGAAGGAGAGGGATTTAATCTTAAGGCAATGGAAAGTTTGTGGAGCTCTAATTCAGTTGCTGGAAATAGCAACTTTACCTTTCAGACACCTCAAACCAACCCTATGAATATGAGTATGGATATCCAAGCAGAACCCTTTTTGCAAATAGGATACCAACAGTATCAGTATGTTCAAGCTGAGCCATCTAATGTTTCCAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATGCTT
Protein sequence

>Msa1319960

ENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTKTIERYQRCSFNPQQDDHQIDCDTQSWYQEVSKLKAKYESLQRTQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMVEQLEELRKRERHLGDLNKQLRIKLEGEGFNLKAMESLWSSNSVAGNSNFTFQTPQTNPMNMSMDIQAEPFLQIGYQQYQYVQAEPSNVSKSMACETNFMQGWML