Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320520 | sp|Q9SVY1|ZWIP2_ARATH | 63.115 | 244 | 50 | 4 | 77 | 280 | 122 | 365 | 1.06e-103 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320520 | A0A396GKT8 | 92.177 | 294 | 10 | 2 | 1 | 281 | 35 | 328 | 1.44e-180 | 509 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1320520 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320520 | MtrunA17_Chr8g0352011 | 92.177 | 294 | 10 | 2 | 1 | 281 | 35 | 328 | 0.0 | 509 |
| Msa1320520 | MtrunA17_Chr1g0173841 | 58.042 | 286 | 94 | 3 | 20 | 280 | 92 | 376 | 2.72e-113 | 332 |
| Msa1320520 | MtrunA17_Chr7g0258011 | 59.431 | 281 | 85 | 5 | 20 | 280 | 66 | 337 | 2.44e-109 | 320 |
| Msa1320520 | MtrunA17_Chr2g0328921 | 61.538 | 273 | 76 | 8 | 21 | 280 | 44 | 300 | 5.59e-107 | 313 |
| Msa1320520 | MtrunA17_Chr2g0321291 | 56.667 | 240 | 74 | 5 | 62 | 280 | 65 | 295 | 1.09e-90 | 271 |
| Msa1320520 | MtrunA17_Chr5g0422571 | 57.848 | 223 | 62 | 5 | 72 | 279 | 57 | 262 | 1.17e-88 | 265 |
| Msa1320520 | MtrunA17_Chr4g0026521 | 63.184 | 201 | 52 | 2 | 79 | 267 | 76 | 266 | 6.54e-88 | 263 |
| Msa1320520 | MtrunA17_Chr4g0053341 | 57.563 | 238 | 62 | 5 | 45 | 270 | 15 | 225 | 1.79e-84 | 253 |
| Msa1320520 | MtrunA17_Chr1g0198651 | 66.871 | 163 | 39 | 2 | 128 | 275 | 99 | 261 | 9.14e-80 | 243 |
| Msa1320520 | MtrunA17_Chr1g0200421 | 36.552 | 145 | 71 | 4 | 138 | 263 | 245 | 387 | 2.81e-19 | 87.4 |
| Msa1320520 | MtrunA17_Chr1g0151351 | 36.496 | 137 | 74 | 5 | 136 | 263 | 62 | 194 | 3.11e-18 | 84.0 |
| Msa1320520 | MtrunA17_Chr1g0191991 | 35.393 | 178 | 87 | 8 | 117 | 279 | 59 | 223 | 9.75e-18 | 82.8 |
| Msa1320520 | MtrunA17_Chr7g0268961 | 33.742 | 163 | 80 | 8 | 132 | 279 | 33 | 182 | 1.13e-17 | 82.4 |
| Msa1320520 | MtrunA17_Chr1g0162971 | 37.313 | 134 | 72 | 4 | 138 | 263 | 64 | 193 | 1.30e-17 | 82.4 |
| Msa1320520 | MtrunA17_Chr4g0029521 | 37.037 | 135 | 72 | 5 | 138 | 263 | 61 | 191 | 1.46e-17 | 82.4 |
| Msa1320520 | MtrunA17_Chr1g0210821 | 36.170 | 141 | 78 | 4 | 131 | 263 | 60 | 196 | 1.90e-17 | 82.0 |
| Msa1320520 | MtrunA17_Chr1g0199101 | 35.461 | 141 | 79 | 4 | 131 | 263 | 63 | 199 | 2.13e-17 | 82.0 |
| Msa1320520 | MtrunA17_Chr1g0163001 | 35.461 | 141 | 79 | 4 | 131 | 263 | 59 | 195 | 3.54e-17 | 81.3 |
| Msa1320520 | MtrunA17_Chr1g0185121 | 36.496 | 137 | 74 | 5 | 136 | 263 | 61 | 193 | 3.66e-17 | 80.9 |
| Msa1320520 | MtrunA17_Chr2g0326381 | 36.567 | 134 | 74 | 4 | 138 | 263 | 55 | 185 | 4.10e-17 | 80.5 |
| Msa1320520 | MtrunA17_Chr8g0342421 | 36.296 | 135 | 72 | 6 | 138 | 263 | 85 | 214 | 4.18e-17 | 80.9 |
| Msa1320520 | MtrunA17_Chr2g0320341 | 35.570 | 149 | 76 | 6 | 138 | 267 | 238 | 385 | 4.27e-17 | 80.5 |
| Msa1320520 | MtrunA17_Chr2g0330171 | 34.043 | 141 | 81 | 4 | 131 | 263 | 62 | 198 | 1.06e-16 | 79.7 |
| Msa1320520 | MtrunA17_Chr1g0181381 | 33.824 | 136 | 79 | 4 | 136 | 263 | 59 | 191 | 3.69e-16 | 78.2 |
| Msa1320520 | MtrunA17_Chr7g0263941 | 34.752 | 141 | 80 | 4 | 131 | 263 | 50 | 186 | 4.11e-16 | 77.8 |
| Msa1320520 | MtrunA17_Chr8g0373541 | 33.333 | 150 | 80 | 5 | 138 | 279 | 56 | 193 | 8.86e-16 | 77.0 |
| Msa1320520 | MtrunA17_Chr2g0324991 | 35.036 | 137 | 77 | 5 | 131 | 258 | 8 | 141 | 1.94e-15 | 72.0 |
| Msa1320520 | MtrunA17_Chr4g0040571 | 33.333 | 141 | 82 | 4 | 131 | 263 | 55 | 191 | 4.47e-15 | 75.1 |
| Msa1320520 | MtrunA17_Chr8g0382121 | 34.328 | 134 | 72 | 4 | 146 | 263 | 127 | 260 | 1.52e-13 | 69.7 |
| Msa1320520 | MtrunA17_Chr3g0141431 | 33.083 | 133 | 77 | 4 | 136 | 259 | 43 | 172 | 2.59e-13 | 69.3 |
| Msa1320520 | MtrunA17_Chr3g0123941 | 30.000 | 180 | 108 | 6 | 115 | 281 | 108 | 282 | 1.17e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320520 | AT3G57670.1 | 63.115 | 244 | 50 | 4 | 77 | 280 | 122 | 365 | 1.08e-104 | 310 |
| Msa1320520 | AT1G51220.1 | 52.525 | 297 | 94 | 5 | 10 | 280 | 51 | 326 | 1.35e-100 | 298 |
| Msa1320520 | AT3G20880.1 | 53.741 | 294 | 98 | 7 | 14 | 278 | 119 | 403 | 2.24e-97 | 292 |
| Msa1320520 | AT1G08290.1 | 50.000 | 272 | 103 | 6 | 40 | 280 | 63 | 332 | 8.77e-84 | 255 |
| Msa1320520 | AT1G13290.1 | 59.524 | 210 | 51 | 5 | 77 | 272 | 54 | 243 | 5.32e-83 | 251 |
| Msa1320520 | AT1G34790.1 | 59.070 | 215 | 69 | 4 | 77 | 278 | 83 | 291 | 2.19e-81 | 248 |
| Msa1320520 | AT1G34370.2 | 34.694 | 147 | 73 | 4 | 138 | 263 | 238 | 382 | 1.24e-18 | 85.9 |
| Msa1320520 | AT1G34370.1 | 34.694 | 147 | 73 | 4 | 138 | 263 | 238 | 382 | 1.24e-18 | 85.9 |
| Msa1320520 | AT1G34370.3 | 34.694 | 147 | 73 | 4 | 138 | 263 | 28 | 172 | 1.79e-18 | 83.6 |
| Msa1320520 | AT1G55110.3 | 37.956 | 137 | 72 | 6 | 136 | 263 | 84 | 216 | 1.91e-18 | 85.1 |
| Msa1320520 | AT1G55110.1 | 37.956 | 137 | 72 | 6 | 136 | 263 | 84 | 216 | 1.91e-18 | 85.1 |
| Msa1320520 | AT1G55110.2 | 37.956 | 137 | 72 | 6 | 136 | 263 | 84 | 216 | 1.91e-18 | 85.1 |
| Msa1320520 | AT5G22890.1 | 36.913 | 149 | 74 | 6 | 138 | 267 | 211 | 358 | 6.92e-18 | 83.2 |
| Msa1320520 | AT2G02080.1 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 9.40e-18 | 83.2 |
| Msa1320520 | AT2G02080.4 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 9.40e-18 | 83.2 |
| Msa1320520 | AT2G02080.5 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 9.40e-18 | 83.2 |
| Msa1320520 | AT2G02080.3 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 9.40e-18 | 83.2 |
| Msa1320520 | AT2G02070.2 | 36.170 | 141 | 78 | 4 | 131 | 263 | 68 | 204 | 1.16e-17 | 83.2 |
| Msa1320520 | AT2G02070.1 | 36.170 | 141 | 78 | 4 | 131 | 263 | 68 | 204 | 1.16e-17 | 83.2 |
| Msa1320520 | AT5G03150.1 | 35.821 | 134 | 75 | 4 | 138 | 263 | 76 | 206 | 1.84e-17 | 82.4 |
| Msa1320520 | AT1G14580.1 | 30.693 | 202 | 115 | 6 | 83 | 263 | 8 | 205 | 2.35e-17 | 82.0 |
| Msa1320520 | AT1G14580.2 | 30.693 | 202 | 115 | 6 | 83 | 263 | 8 | 205 | 2.35e-17 | 82.0 |
| Msa1320520 | AT1G14580.3 | 30.693 | 202 | 115 | 6 | 83 | 263 | 22 | 219 | 2.83e-17 | 81.6 |
| Msa1320520 | AT2G02080.6 | 36.842 | 133 | 72 | 4 | 139 | 263 | 1 | 129 | 4.21e-17 | 81.3 |
| Msa1320520 | AT2G02080.2 | 36.842 | 133 | 72 | 4 | 139 | 263 | 1 | 129 | 4.21e-17 | 81.3 |
| Msa1320520 | AT5G66730.1 | 35.766 | 137 | 74 | 6 | 136 | 263 | 53 | 184 | 3.10e-16 | 79.0 |
| Msa1320520 | AT3G45260.2 | 36.567 | 134 | 74 | 4 | 138 | 263 | 62 | 192 | 6.65e-16 | 77.8 |
| Msa1320520 | AT3G45260.1 | 36.567 | 134 | 74 | 4 | 138 | 263 | 62 | 192 | 6.65e-16 | 77.8 |
| Msa1320520 | AT1G03840.2 | 34.043 | 141 | 81 | 5 | 131 | 263 | 55 | 191 | 9.67e-16 | 77.4 |
| Msa1320520 | AT1G03840.1 | 34.043 | 141 | 81 | 5 | 131 | 263 | 57 | 193 | 9.88e-16 | 77.4 |
| Msa1320520 | AT5G60470.1 | 35.115 | 131 | 73 | 4 | 138 | 259 | 58 | 185 | 1.01e-15 | 77.0 |
| Msa1320520 | AT5G44160.2 | 35.075 | 134 | 75 | 4 | 138 | 263 | 21 | 150 | 1.07e-15 | 77.0 |
| Msa1320520 | AT5G44160.1 | 35.075 | 134 | 75 | 4 | 138 | 263 | 60 | 189 | 1.08e-15 | 77.0 |
| Msa1320520 | AT5G60470.2 | 35.115 | 131 | 73 | 4 | 138 | 259 | 67 | 194 | 1.23e-15 | 77.0 |
| Msa1320520 | AT5G60470.3 | 35.115 | 131 | 73 | 4 | 138 | 259 | 63 | 190 | 1.26e-15 | 77.0 |
| Msa1320520 | AT3G13810.4 | 33.803 | 142 | 81 | 5 | 131 | 263 | 86 | 223 | 5.82e-15 | 75.1 |
| Msa1320520 | AT3G13810.1 | 33.803 | 142 | 81 | 5 | 131 | 263 | 86 | 223 | 5.82e-15 | 75.1 |
| Msa1320520 | AT3G13810.2 | 33.803 | 142 | 81 | 5 | 131 | 263 | 87 | 224 | 6.96e-15 | 74.7 |
| Msa1320520 | AT3G13810.5 | 33.803 | 142 | 81 | 5 | 131 | 263 | 81 | 218 | 7.80e-15 | 74.7 |
| Msa1320520 | AT3G13810.3 | 33.803 | 142 | 81 | 5 | 131 | 263 | 73 | 210 | 7.93e-15 | 74.7 |
| Msa1320520 | AT4G02670.2 | 33.803 | 142 | 81 | 6 | 131 | 263 | 71 | 208 | 9.08e-15 | 74.3 |
| Msa1320520 | AT4G02670.1 | 33.803 | 142 | 81 | 6 | 131 | 263 | 69 | 206 | 9.18e-15 | 73.9 |
| Msa1320520 | AT3G13810.6 | 33.803 | 142 | 81 | 5 | 131 | 263 | 67 | 204 | 9.22e-15 | 74.3 |
| Msa1320520 | AT3G50700.1 | 32.237 | 152 | 83 | 5 | 136 | 279 | 55 | 194 | 2.18e-14 | 73.2 |
Find 57 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTGTTGCACTACAAAT+AGG | 0.241591 | 8_4:-25062639 | Msa1320520:CDS |
| AGTAATTCTTCTTCTGATCT+TGG | 0.279002 | 8_4:-25062609 | Msa1320520:CDS |
| GGTTATGGTCATGGTGCTTT+TGG | 0.295781 | 8_4:-25060105 | Msa1320520:CDS |
| CATATTAAAGCCTTTGGTTA+TGG | 0.310320 | 8_4:-25060120 | Msa1320520:CDS |
| AGGAGGAGAAGGAGGATTCA+TGG | 0.322930 | 8_4:+25062833 | None:intergenic |
| AGAAGAATTGTGGCAAAATA+TGG | 0.329283 | 8_4:-25060191 | Msa1320520:CDS |
| AAGGGGCCAGATTCTCTAAA+AGG | 0.343680 | 8_4:-25060417 | Msa1320520:CDS |
| AAAGACCATATTAAAGCCTT+TGG | 0.344662 | 8_4:-25060126 | Msa1320520:CDS |
| GATTTATGAGCAACAACCTT+TGG | 0.358811 | 8_4:-25062529 | Msa1320520:CDS |
| AGGATTCATGGTGGAGGATG+AGG | 0.378060 | 8_4:+25062845 | None:intergenic |
| CATAACCAAAGGCTTTAATA+TGG | 0.384327 | 8_4:+25060121 | None:intergenic |
| CTCATCAAATTGCATAGAAA+TGG | 0.392609 | 8_4:-25062574 | Msa1320520:CDS |
| TTACTGTTGCACTACAAATA+GGG | 0.402089 | 8_4:-25062638 | Msa1320520:CDS |
| CTTCTTCTGATCTTGGATCA+AGG | 0.402872 | 8_4:-25062602 | Msa1320520:CDS |
| CAACAGATACAACAATCTTC+AGG | 0.407884 | 8_4:-25062409 | Msa1320520:intron |
| CATTTGCAGTGAAAGGTGAT+TGG | 0.425078 | 8_4:-25060224 | Msa1320520:CDS |
| CATGGTGGAGGATGAGGAGG+AGG | 0.440334 | 8_4:+25062851 | None:intergenic |
| ACACCTTCTCAAATTCTCAT+TGG | 0.440374 | 8_4:-25062471 | Msa1320520:CDS |
| TGAACAACAAGGGTCAGTAT+TGG | 0.446866 | 8_4:-25062500 | Msa1320520:CDS |
| TGAATTAGAAGACAAGAGAA+TGG | 0.451445 | 8_4:-25062712 | Msa1320520:CDS |
| CCATGCTATTGTTGTGCACC+AGG | 0.454587 | 8_4:-25060366 | Msa1320520:CDS |
| AAAGCCTTTGGTTATGGTCA+TGG | 0.479825 | 8_4:-25060114 | Msa1320520:CDS |
| TTCTGATCTTGGATCAAGGA+TGG | 0.488172 | 8_4:-25062598 | Msa1320520:CDS |
| TGAGAGGCTTTGCTCTAGGA+TGG | 0.497344 | 8_4:+25060325 | None:intergenic |
| TCTTTGAGAGGCTTTGCTCT+AGG | 0.513133 | 8_4:+25060321 | None:intergenic |
| ATGAGAATTTGAGAAGGTGT+TGG | 0.518525 | 8_4:+25062474 | None:intergenic |
| AGAAGGAGGATTCATGGTGG+AGG | 0.523835 | 8_4:+25062839 | None:intergenic |
| AGAGGAAGAGCTTCTCTAAG+AGG | 0.528799 | 8_4:+25062813 | None:intergenic |
| CCTTATATGTGTAGAAAATG+TGG | 0.531273 | 8_4:-25060252 | Msa1320520:CDS |
| ATTCATGGTGGAGGATGAGG+AGG | 0.531814 | 8_4:+25062848 | None:intergenic |
| AGATCAGAAGAAGAATTACT+AGG | 0.534223 | 8_4:+25062612 | None:intergenic |
| TTGTTGTTCAATTTATCCAA+AGG | 0.534250 | 8_4:+25062513 | None:intergenic |
| GCTTCTCTAAGAGGAGGAGA+AGG | 0.538140 | 8_4:+25062822 | None:intergenic |
| ATGCTTAGTTTGTTAATGAG+AGG | 0.552964 | 8_4:+25062795 | None:intergenic |
| TTGCAAGAAGAAGATGAAGT+AGG | 0.553002 | 8_4:-25060072 | None:intergenic |
| GACAAGAGAATGGAAAGGCA+TGG | 0.561442 | 8_4:-25062702 | Msa1320520:CDS |
| TGCAAGAAGAAGATGAAGTA+GGG | 0.562185 | 8_4:-25060071 | None:intergenic |
| AGGAGAAGGAGGATTCATGG+TGG | 0.564100 | 8_4:+25062836 | None:intergenic |
| ACACATTATAAGAGAAAGCA+TGG | 0.564164 | 8_4:-25060282 | Msa1320520:CDS |
| GGTAGCCTTAGCATTGCTGT+TGG | 0.572264 | 8_4:+25060387 | None:intergenic |
| TCTCTAAGAGGAGGAGAAGG+AGG | 0.574547 | 8_4:+25062825 | None:intergenic |
| CACAACCAACAGCAATGCTA+AGG | 0.579227 | 8_4:-25060392 | Msa1320520:CDS |
| ATGGTGGAGGATGAGGAGGA+GGG | 0.583723 | 8_4:+25062852 | None:intergenic |
| AGAGTTCTAAAATCTTTGAG+AGG | 0.584007 | 8_4:+25060309 | None:intergenic |
| AAAATATGGTATTGTTTGTG+TGG | 0.602783 | 8_4:-25060177 | Msa1320520:CDS |
| TAGAAGACAAGAGAATGGAA+AGG | 0.616360 | 8_4:-25062707 | Msa1320520:CDS |
| GGCAAATCATTTGCAGTGAA+AGG | 0.616551 | 8_4:-25060231 | Msa1320520:CDS |
| TTGGATAAATTGAACAACAA+GGG | 0.616704 | 8_4:-25062510 | Msa1320520:CDS |
| AGAACACATGAGAAGAATTG+TGG | 0.625082 | 8_4:-25060201 | Msa1320520:CDS |
| GGAAGAGCTTCTCTAAGAGG+AGG | 0.638851 | 8_4:+25062816 | None:intergenic |
| TCAATGTTATGCTTGCAACC+TGG | 0.646006 | 8_4:+25060348 | None:intergenic |
| GGGTTGATGATGAAACATGT+TGG | 0.646858 | 8_4:+25062872 | None:intergenic |
| TTTGGATAAATTGAACAACA+AGG | 0.660452 | 8_4:-25062511 | Msa1320520:CDS |
| AGCACCATGACCATAACCAA+AGG | 0.668968 | 8_4:+25060110 | None:intergenic |
| ACAGGACAAGAGAATTGCGT+AGG | 0.670453 | 8_4:+25062447 | None:intergenic |
| CCTGGTGCACAACAATAGCA+TGG | 0.670992 | 8_4:+25060366 | None:intergenic |
| GGACCAATGAGAATTTGAGA+AGG | 0.690488 | 8_4:+25062468 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATTATACTTAAATTAT+TGG | + | chr8_4:25061313-25061332 | None:intergenic | 10.0% |
| !!! | TTCTTTATTTACTTTTTTTT+TGG | - | chr8_4:25061555-25061574 | Msa1320520:intron | 10.0% |
| !!! | ATTTTCTTTTCTAAATTTAG+GGG | + | chr8_4:25060705-25060724 | None:intergenic | 15.0% |
| !!! | CATTTTCTTTTCTAAATTTA+GGG | + | chr8_4:25060706-25060725 | None:intergenic | 15.0% |
| !!! | TCATTTTCTTTTCTAAATTT+AGG | + | chr8_4:25060707-25060726 | None:intergenic | 15.0% |
| !! | ATTAGTTATTCCATTTATAT+AGG | - | chr8_4:25062174-25062193 | Msa1320520:intron | 15.0% |
| !!! | AAAATGTAATTAATTTTGTG+TGG | - | chr8_4:25062275-25062294 | Msa1320520:intron | 15.0% |
| !! | TGATATATTTAAGAGAAATT+AGG | - | chr8_4:25062342-25062361 | Msa1320520:intron | 15.0% |
| !! | GATATATTTAAGAGAAATTA+GGG | - | chr8_4:25062343-25062362 | Msa1320520:intron | 15.0% |
| !! | TGAGTATTAAAAATGTTTGA+GGG | + | chr8_4:25060215-25060234 | None:intergenic | 20.0% |
| !! | TTGAGTATTAAAAATGTTTG+AGG | + | chr8_4:25060216-25060235 | None:intergenic | 20.0% |
| !! | AAAAAACAGAAGTAAAAACA+TGG | + | chr8_4:25060661-25060680 | None:intergenic | 20.0% |
| !!! | GATATTTGAAACTAACAAAA+AGG | + | chr8_4:25060803-25060822 | None:intergenic | 20.0% |
| !!! | TATAATTTTGAATGGCTTAA+AGG | + | chr8_4:25061101-25061120 | None:intergenic | 20.0% |
| !! | TTAGAACAATTTCTACAAAA+GGG | + | chr8_4:25061366-25061385 | None:intergenic | 20.0% |
| !!! | AATAGAAAACCAAGTATTTT+TGG | + | chr8_4:25061498-25061517 | None:intergenic | 20.0% |
| !!! | TTTTGTTACTTTCTTTTGTT+AGG | - | chr8_4:25061586-25061605 | Msa1320520:intron | 20.0% |
| !!! | TTTGTTACTTTCTTTTGTTA+GGG | - | chr8_4:25061587-25061606 | Msa1320520:intron | 20.0% |
| !! | AAGATGCATATAAAAATTCA+AGG | + | chr8_4:25061631-25061650 | None:intergenic | 20.0% |
| !! | ATTACGATGAGTATATATTT+AGG | + | chr8_4:25061673-25061692 | None:intergenic | 20.0% |
| !! | TTGAAACTAATGTACAAATT+TGG | + | chr8_4:25061732-25061751 | None:intergenic | 20.0% |
| !!! | ATTTCTAGAAATAACAAAAC+TGG | - | chr8_4:25061914-25061933 | Msa1320520:intron | 20.0% |
| !! | TTATTCCATTTATATAGGTT+CGG | - | chr8_4:25062179-25062198 | Msa1320520:intron | 20.0% |
| !! | TTGTTGTTCAATTTATCCAA+AGG | + | chr8_4:25060449-25060468 | None:intergenic | 25.0% |
| ! | TTTGGATAAATTGAACAACA+AGG | - | chr8_4:25060448-25060467 | Msa1320520:intron | 25.0% |
| ! | TTGGATAAATTGAACAACAA+GGG | - | chr8_4:25060449-25060468 | Msa1320520:intron | 25.0% |
| ! | ATGTGTATCAAGAATCATAA+TGG | - | chr8_4:25060741-25060760 | Msa1320520:intron | 25.0% |
| ! | GGAAAAAAAAACATGCAAAA+GGG | + | chr8_4:25060782-25060801 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAAACATGCAAA+AGG | + | chr8_4:25060783-25060802 | None:intergenic | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | + | chr8_4:25061204-25061223 | None:intergenic | 25.0% |
| !! | ATATCTGAGACATCAATTAA+AGG | + | chr8_4:25061284-25061303 | None:intergenic | 25.0% |
| ! | CTTAGAACAATTTCTACAAA+AGG | + | chr8_4:25061367-25061386 | None:intergenic | 25.0% |
| !!! | GTAGAAATTGTTCTAAGTTT+TGG | - | chr8_4:25061370-25061389 | Msa1320520:intron | 25.0% |
| !!! | AACTGGTCTTTATTTTATCA+TGG | - | chr8_4:25061408-25061427 | Msa1320520:intron | 25.0% |
| ! | ATTACCATAAAATTGAAGAC+AGG | + | chr8_4:25061524-25061543 | None:intergenic | 25.0% |
| ! | TATAAAAATTCAAGGAATGG+TGG | + | chr8_4:25061623-25061642 | None:intergenic | 25.0% |
| ! | GCATATAAAAATTCAAGGAA+TGG | + | chr8_4:25061626-25061645 | None:intergenic | 25.0% |
| ! | TCAAATGATGAACTTATTGT+AGG | - | chr8_4:25061748-25061767 | Msa1320520:intron | 25.0% |
| ! | GAACTTATTGTAGGTAAATT+TGG | - | chr8_4:25061757-25061776 | Msa1320520:intron | 25.0% |
| ! | TTGAACTAGAATTGAAAGTT+GGG | + | chr8_4:25061892-25061911 | None:intergenic | 25.0% |
| ! | ATTGAACTAGAATTGAAAGT+TGG | + | chr8_4:25061893-25061912 | None:intergenic | 25.0% |
| !!! | ATATTTCATTTTTGTGTCAC+TGG | - | chr8_4:25061956-25061975 | Msa1320520:intron | 25.0% |
| ! | GTGATTTAGACAAAATCATT+GGG | + | chr8_4:25062041-25062060 | None:intergenic | 25.0% |
| ! | TGTGATTTAGACAAAATCAT+TGG | + | chr8_4:25062042-25062061 | None:intergenic | 25.0% |
| ! | AAAAACCGAACCTATATAAA+TGG | + | chr8_4:25062187-25062206 | None:intergenic | 25.0% |
| ! | TATTTAAGAGAAATTAGGGA+CGG | - | chr8_4:25062347-25062366 | Msa1320520:intron | 25.0% |
| ! | AAAATATGGTATTGTTTGTG+TGG | - | chr8_4:25062782-25062801 | Msa1320520:CDS | 25.0% |
| !! | GCTCAGATTTTAAACATAAA+AGG | - | chr8_4:25062804-25062823 | Msa1320520:CDS | 25.0% |
| !! | ATGCTTAGTTTGTTAATGAG+AGG | + | chr8_4:25060167-25060186 | None:intergenic | 30.0% |
| TGAATTAGAAGACAAGAGAA+TGG | - | chr8_4:25060247-25060266 | Msa1320520:CDS | 30.0% | |
| TTACTGTTGCACTACAAATA+GGG | - | chr8_4:25060321-25060340 | Msa1320520:CDS | 30.0% | |
| AGATCAGAAGAAGAATTACT+AGG | + | chr8_4:25060350-25060369 | None:intergenic | 30.0% | |
| AGTAATTCTTCTTCTGATCT+TGG | - | chr8_4:25060350-25060369 | Msa1320520:CDS | 30.0% | |
| CTCATCAAATTGCATAGAAA+TGG | - | chr8_4:25060385-25060404 | Msa1320520:CDS | 30.0% | |
| ! | TCTTGAAAACTATGCTTTTG+AGG | - | chr8_4:25060581-25060600 | Msa1320520:intron | 30.0% |
| GTTAGGAAAATATGGCAATA+AGG | + | chr8_4:25060627-25060646 | None:intergenic | 30.0% | |
| TAGATGCAGTTAGGAAAATA+TGG | + | chr8_4:25060635-25060654 | None:intergenic | 30.0% | |
| !!! | TTTTCATTGATTTGCAGTAC+TGG | + | chr8_4:25060966-25060985 | None:intergenic | 30.0% |
| GTCTGTGATAAGATCATATA+TGG | - | chr8_4:25061073-25061092 | Msa1320520:intron | 30.0% | |
| ! | GTTTTGCTTATAATTGTGAC+TGG | + | chr8_4:25061130-25061149 | None:intergenic | 30.0% |
| ! | TATGCCTGTCTTCAATTTTA+TGG | - | chr8_4:25061517-25061536 | Msa1320520:intron | 30.0% |
| GGAATAGTATATTCAACAGT+GGG | + | chr8_4:25061783-25061802 | None:intergenic | 30.0% | |
| TGGAATAGTATATTCAACAG+TGG | + | chr8_4:25061784-25061803 | None:intergenic | 30.0% | |
| ! | AGACTTGTGATTTTCTGTTA+TGG | + | chr8_4:25061804-25061823 | None:intergenic | 30.0% |
| ACAGAAAATCACAAGTCTAA+AGG | - | chr8_4:25061806-25061825 | Msa1320520:intron | 30.0% | |
| CTGAAAAATAAATGCAAGAC+TGG | - | chr8_4:25062072-25062091 | Msa1320520:intron | 30.0% | |
| TTGCAACAAGAAAACTAAAG+AGG | - | chr8_4:25062403-25062422 | Msa1320520:intron | 30.0% | |
| TGCAACAAGAAAACTAAAGA+GGG | - | chr8_4:25062404-25062423 | Msa1320520:intron | 30.0% | |
| AATATATGGGTGCATCTTTA+TGG | - | chr8_4:25062478-25062497 | Msa1320520:CDS | 30.0% | |
| !! | AGAGTTCTAAAATCTTTGAG+AGG | + | chr8_4:25062653-25062672 | None:intergenic | 30.0% |
| ACACATTATAAGAGAAAGCA+TGG | - | chr8_4:25062677-25062696 | Msa1320520:CDS | 30.0% | |
| ! | CCACATTTTCTACACATATA+AGG | + | chr8_4:25062710-25062729 | None:intergenic | 30.0% |
| CCTTATATGTGTAGAAAATG+TGG | - | chr8_4:25062707-25062726 | Msa1320520:CDS | 30.0% | |
| AGAAGAATTGTGGCAAAATA+TGG | - | chr8_4:25062768-25062787 | Msa1320520:CDS | 30.0% | |
| AAAGACCATATTAAAGCCTT+TGG | - | chr8_4:25062833-25062852 | Msa1320520:CDS | 30.0% | |
| ! | CATAACCAAAGGCTTTAATA+TGG | + | chr8_4:25062841-25062860 | None:intergenic | 30.0% |
| CATATTAAAGCCTTTGGTTA+TGG | - | chr8_4:25062839-25062858 | Msa1320520:CDS | 30.0% | |
| TAGAAGACAAGAGAATGGAA+AGG | - | chr8_4:25060252-25060271 | Msa1320520:CDS | 35.0% | |
| GTTACTGTTGCACTACAAAT+AGG | - | chr8_4:25060320-25060339 | Msa1320520:CDS | 35.0% | |
| GATTTATGAGCAACAACCTT+TGG | - | chr8_4:25060430-25060449 | Msa1320520:intron | 35.0% | |
| ! | ATGAGAATTTGAGAAGGTGT+TGG | + | chr8_4:25060488-25060507 | None:intergenic | 35.0% |
| ACACCTTCTCAAATTCTCAT+TGG | - | chr8_4:25060488-25060507 | Msa1320520:intron | 35.0% | |
| !!! | TTGAAAGTTTTAGAGCACAC+AGG | + | chr8_4:25060533-25060552 | None:intergenic | 35.0% |
| CAACAGATACAACAATCTTC+AGG | - | chr8_4:25060550-25060569 | Msa1320520:intron | 35.0% | |
| !!! | AAACTATGCTTTTGAGGTGT+TGG | - | chr8_4:25060587-25060606 | Msa1320520:intron | 35.0% |
| !!! | ACATGGTTTTAGATGCAGTT+AGG | + | chr8_4:25060644-25060663 | None:intergenic | 35.0% |
| !! | GGAGGGTGTATAATTTTGAA+TGG | + | chr8_4:25061109-25061128 | None:intergenic | 35.0% |
| TGCTTATAATTGTGACTGGA+GGG | + | chr8_4:25061126-25061145 | None:intergenic | 35.0% | |
| TTGCTTATAATTGTGACTGG+AGG | + | chr8_4:25061127-25061146 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGACCAG+AGG | - | chr8_4:25061242-25061261 | Msa1320520:intron | 35.0% | |
| TGCTTATAATAGTGACCAGA+GGG | - | chr8_4:25061243-25061262 | Msa1320520:intron | 35.0% | |
| TTCCATATATATACACCCTC+TGG | + | chr8_4:25061261-25061280 | None:intergenic | 35.0% | |
| AACCTTGTGCCAAAAATACT+TGG | - | chr8_4:25061486-25061505 | Msa1320520:intron | 35.0% | |
| !!! | AACCAAGTATTTTTGGCACA+AGG | + | chr8_4:25061491-25061510 | None:intergenic | 35.0% |
| CAACGTCATATAATTTGGGA+CGG | + | chr8_4:25062234-25062253 | None:intergenic | 35.0% | |
| TCCCAAATTATATGACGTTG+TGG | - | chr8_4:25062234-25062253 | Msa1320520:intron | 35.0% | |
| CCCACAACGTCATATAATTT+GGG | + | chr8_4:25062238-25062257 | None:intergenic | 35.0% | |
| CCCAAATTATATGACGTTGT+GGG | - | chr8_4:25062235-25062254 | Msa1320520:intron | 35.0% | |
| ! | TGGATTTTCAGATGCATATG+TGG | - | chr8_4:25062498-25062517 | Msa1320520:CDS | 35.0% |
| ! | GGATTTTCAGATGCATATGT+GGG | - | chr8_4:25062499-25062518 | Msa1320520:CDS | 35.0% |
| ! | GATTTTCAGATGCATATGTG+GGG | - | chr8_4:25062500-25062519 | Msa1320520:CDS | 35.0% |
| ACATGGATCTCAATACAGAA+AGG | - | chr8_4:25062523-25062542 | Msa1320520:CDS | 35.0% | |
| CATGGATCTCAATACAGAAA+GGG | - | chr8_4:25062524-25062543 | Msa1320520:CDS | 35.0% | |
| ATGGATCTCAATACAGAAAG+GGG | - | chr8_4:25062525-25062544 | Msa1320520:CDS | 35.0% | |
| !! | TGTGATCCTTTTAGAGAATC+TGG | + | chr8_4:25062551-25062570 | None:intergenic | 35.0% |
| AGAACACATGAGAAGAATTG+TGG | - | chr8_4:25062758-25062777 | Msa1320520:CDS | 35.0% | |
| !! | GGGTTGATGATGAAACATGT+TGG | + | chr8_4:25060090-25060109 | None:intergenic | 40.0% |
| CTTCTTCTGATCTTGGATCA+AGG | - | chr8_4:25060357-25060376 | Msa1320520:CDS | 40.0% | |
| TTCTGATCTTGGATCAAGGA+TGG | - | chr8_4:25060361-25060380 | Msa1320520:CDS | 40.0% | |
| TGAACAACAAGGGTCAGTAT+TGG | - | chr8_4:25060459-25060478 | Msa1320520:intron | 40.0% | |
| GGACCAATGAGAATTTGAGA+AGG | + | chr8_4:25060494-25060513 | None:intergenic | 40.0% | |
| ! | GACCAGAGGGTGTATATATA+TGG | - | chr8_4:25061256-25061275 | Msa1320520:intron | 40.0% |
| AACTCGACACAGTACTATTG+AGG | - | chr8_4:25062002-25062021 | Msa1320520:intron | 40.0% | |
| !! | ACGGAGAGAGTATTGATCAA+GGG | + | chr8_4:25062215-25062234 | None:intergenic | 40.0% |
| GCCCACAACGTCATATAATT+TGG | + | chr8_4:25062239-25062258 | None:intergenic | 40.0% | |
| TCAATGTTATGCTTGCAACC+TGG | + | chr8_4:25062614-25062633 | None:intergenic | 40.0% | |
| GGCAAATCATTTGCAGTGAA+AGG | - | chr8_4:25062728-25062747 | Msa1320520:CDS | 40.0% | |
| CATTTGCAGTGAAAGGTGAT+TGG | - | chr8_4:25062735-25062754 | Msa1320520:CDS | 40.0% | |
| AAAGCCTTTGGTTATGGTCA+TGG | - | chr8_4:25062845-25062864 | Msa1320520:CDS | 40.0% | |
| AGAGGAAGAGCTTCTCTAAG+AGG | + | chr8_4:25060149-25060168 | None:intergenic | 45.0% | |
| GACAAGAGAATGGAAAGGCA+TGG | - | chr8_4:25060257-25060276 | Msa1320520:CDS | 45.0% | |
| ACAGGACAAGAGAATTGCGT+AGG | + | chr8_4:25060515-25060534 | None:intergenic | 45.0% | |
| !!! | TGCTTTTGAGGTGTTGGCAA+TGG | - | chr8_4:25060593-25060612 | Msa1320520:intron | 45.0% |
| GGTTACTGCTAAGTGCTAAC+TGG | - | chr8_4:25061391-25061410 | Msa1320520:intron | 45.0% | |
| !! | CGGAGAGAGTATTGATCAAG+GGG | + | chr8_4:25062214-25062233 | None:intergenic | 45.0% |
| !! | GACGGAGAGAGTATTGATCA+AGG | + | chr8_4:25062216-25062235 | None:intergenic | 45.0% |
| AAGGGGCCAGATTCTCTAAA+AGG | - | chr8_4:25062542-25062561 | Msa1320520:CDS | 45.0% | |
| CACAACCAACAGCAATGCTA+AGG | - | chr8_4:25062567-25062586 | Msa1320520:CDS | 45.0% | |
| ! | TCTTTGAGAGGCTTTGCTCT+AGG | + | chr8_4:25062641-25062660 | None:intergenic | 45.0% |
| AGCACCATGACCATAACCAA+AGG | + | chr8_4:25062852-25062871 | None:intergenic | 45.0% | |
| ! | GGTTATGGTCATGGTGCTTT+TGG | - | chr8_4:25062854-25062873 | Msa1320520:CDS | 45.0% |
| !! | TTTATTTAATAGTTAATATA+TGG | - | chr8_4:25062464-25062483 | Msa1320520:CDS | 5.0% |
| !! | TTATTTAATAGTTAATATAT+GGG | - | chr8_4:25062465-25062484 | Msa1320520:CDS | 5.0% |
| ! | ATTCATGGTGGAGGATGAGG+AGG | + | chr8_4:25060114-25060133 | None:intergenic | 50.0% |
| ! | AGGATTCATGGTGGAGGATG+AGG | + | chr8_4:25060117-25060136 | None:intergenic | 50.0% |
| AGAAGGAGGATTCATGGTGG+AGG | + | chr8_4:25060123-25060142 | None:intergenic | 50.0% | |
| AGGAGAAGGAGGATTCATGG+TGG | + | chr8_4:25060126-25060145 | None:intergenic | 50.0% | |
| AGGAGGAGAAGGAGGATTCA+TGG | + | chr8_4:25060129-25060148 | None:intergenic | 50.0% | |
| ! | TCTCTAAGAGGAGGAGAAGG+AGG | + | chr8_4:25060137-25060156 | None:intergenic | 50.0% |
| ! | GCTTCTCTAAGAGGAGGAGA+AGG | + | chr8_4:25060140-25060159 | None:intergenic | 50.0% |
| ! | GGAAGAGCTTCTCTAAGAGG+AGG | + | chr8_4:25060146-25060165 | None:intergenic | 50.0% |
| CAGATGCATATGTGGGGACA+TGG | - | chr8_4:25062506-25062525 | Msa1320520:CDS | 50.0% | |
| ! | GGTAGCCTTAGCATTGCTGT+TGG | + | chr8_4:25062575-25062594 | None:intergenic | 50.0% |
| CCTGGTGCACAACAATAGCA+TGG | + | chr8_4:25062596-25062615 | None:intergenic | 50.0% | |
| CCATGCTATTGTTGTGCACC+AGG | - | chr8_4:25062593-25062612 | Msa1320520:CDS | 50.0% | |
| !! | TGAGAGGCTTTGCTCTAGGA+TGG | + | chr8_4:25062637-25062656 | None:intergenic | 50.0% |
| ! | ATGGTGGAGGATGAGGAGGA+GGG | + | chr8_4:25060110-25060129 | None:intergenic | 55.0% |
| CTGGTGCAGCACAGTGTTCT+AGG | + | chr8_4:25060947-25060966 | None:intergenic | 55.0% | |
| ! | CATGGTGGAGGATGAGGAGG+AGG | + | chr8_4:25060111-25060130 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 25060074 | 25062907 | 25060074 | ID=Msa1320520;Name=Msa1320520 |
| chr8_4 | mRNA | 25060074 | 25062907 | 25060074 | ID=Msa1320520-mRNA-1;Parent=Msa1320520;Name=Msa1320520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=18|0|0.5|1|0|0.5|2|0|281 |
| chr8_4 | exon | 25060074 | 25060436 | 25060074 | ID=Msa1320520-mRNA-1:exon:8577;Parent=Msa1320520-mRNA-1 |
| chr8_4 | exon | 25062410 | 25062907 | 25062410 | ID=Msa1320520-mRNA-1:exon:8576;Parent=Msa1320520-mRNA-1 |
| chr8_4 | five_prime_UTR | 25062890 | 25062907 | 25062890 | ID=Msa1320520-mRNA-1:five_prime_utr;Parent=Msa1320520-mRNA-1 |
| chr8_4 | CDS | 25062410 | 25062889 | 25062410 | ID=Msa1320520-mRNA-1:cds;Parent=Msa1320520-mRNA-1 |
| chr8_4 | CDS | 25060074 | 25060436 | 25060074 | ID=Msa1320520-mRNA-1:cds;Parent=Msa1320520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
