Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322290 | XP_039685680.1 | 75.845 | 799 | 119 | 7 | 1 | 725 | 1 | 799 | 0.0 | 1217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322290 | sp|Q9SZL8|FRS5_ARATH | 27.660 | 470 | 317 | 6 | 32 | 499 | 70 | 518 | 1.03e-55 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322290 | D3YBB9 | 67.410 | 807 | 192 | 7 | 1 | 744 | 49 | 847 | 0.0 | 1087 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1322290 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322290 | MtrunA17_Chr2g0324011 | 32.008 | 503 | 311 | 9 | 36 | 532 | 8 | 485 | 1.60e-88 | 290 |
| Msa1322290 | MtrunA17_Chr3g0082121 | 30.746 | 657 | 381 | 17 | 41 | 673 | 49 | 655 | 2.55e-84 | 281 |
| Msa1322290 | MtrunA17_Chr3g0088371 | 81.633 | 147 | 24 | 1 | 601 | 744 | 38 | 184 | 4.81e-76 | 243 |
| Msa1322290 | MtrunA17_Chr1g0202341 | 31.849 | 449 | 276 | 8 | 34 | 478 | 50 | 472 | 1.73e-66 | 233 |
| Msa1322290 | MtrunA17_Chr8g0363841 | 29.899 | 495 | 317 | 9 | 40 | 530 | 22 | 490 | 3.08e-64 | 226 |
| Msa1322290 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 5.09e-63 | 213 |
| Msa1322290 | MtrunA17_Chr2g0296781 | 30.172 | 464 | 291 | 9 | 39 | 499 | 1 | 434 | 5.26e-59 | 213 |
| Msa1322290 | MtrunA17_Chr1g0203721 | 25.507 | 690 | 431 | 18 | 40 | 691 | 68 | 712 | 6.60e-59 | 214 |
| Msa1322290 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 1.32e-55 | 199 |
| Msa1322290 | MtrunA17_Chr5g0448761 | 27.689 | 502 | 331 | 10 | 31 | 524 | 56 | 533 | 2.31e-54 | 200 |
| Msa1322290 | MtrunA17_Chr2g0287651 | 27.968 | 497 | 317 | 12 | 9 | 496 | 48 | 512 | 1.26e-53 | 199 |
| Msa1322290 | MtrunA17_Chr6g0458391 | 26.789 | 545 | 337 | 13 | 41 | 575 | 231 | 723 | 2.28e-53 | 197 |
| Msa1322290 | MtrunA17_Chr6g0477261 | 33.022 | 321 | 210 | 3 | 180 | 499 | 7 | 323 | 5.53e-53 | 194 |
| Msa1322290 | MtrunA17_Chr7g0258861 | 34.967 | 306 | 175 | 6 | 36 | 336 | 8 | 294 | 6.10e-52 | 183 |
| Msa1322290 | MtrunA17_Chr5g0441581 | 26.419 | 511 | 320 | 12 | 32 | 530 | 26 | 492 | 4.36e-48 | 181 |
| Msa1322290 | MtrunA17_Chr1g0198761 | 27.829 | 539 | 329 | 16 | 26 | 540 | 38 | 540 | 1.29e-46 | 177 |
| Msa1322290 | MtrunA17_Chr1g0196541 | 27.586 | 464 | 303 | 12 | 39 | 499 | 1 | 434 | 3.52e-46 | 176 |
| Msa1322290 | MtrunA17_Chr1g0203051 | 23.107 | 515 | 366 | 6 | 50 | 562 | 94 | 580 | 1.38e-44 | 170 |
| Msa1322290 | MtrunA17_Chr5g0440451 | 23.494 | 664 | 435 | 15 | 34 | 667 | 42 | 662 | 2.46e-44 | 172 |
| Msa1322290 | MtrunA17_Chr2g0276841 | 26.575 | 508 | 316 | 13 | 49 | 536 | 84 | 554 | 2.02e-42 | 164 |
| Msa1322290 | MtrunA17_Chr2g0329031 | 25.833 | 480 | 313 | 11 | 23 | 496 | 2 | 444 | 5.93e-42 | 163 |
| Msa1322290 | MtrunA17_Chr2g0291591 | 25.749 | 501 | 312 | 13 | 16 | 499 | 44 | 501 | 6.88e-42 | 161 |
| Msa1322290 | MtrunA17_Chr5g0431001 | 27.716 | 451 | 281 | 12 | 40 | 473 | 66 | 488 | 8.89e-42 | 159 |
| Msa1322290 | MtrunA17_Chr6g0475591 | 93.151 | 73 | 5 | 0 | 188 | 260 | 1 | 73 | 3.18e-41 | 145 |
| Msa1322290 | MtrunA17_Chr2g0290391 | 25.981 | 535 | 342 | 15 | 38 | 553 | 54 | 553 | 4.02e-41 | 160 |
| Msa1322290 | MtrunA17_Chr3g0118611 | 27.669 | 459 | 306 | 10 | 221 | 665 | 111 | 557 | 4.83e-41 | 161 |
| Msa1322290 | MtrunA17_Chr1g0207551 | 23.867 | 662 | 426 | 16 | 31 | 664 | 30 | 641 | 2.35e-39 | 156 |
| Msa1322290 | MtrunA17_Chr2g0294841 | 27.669 | 459 | 285 | 14 | 41 | 482 | 51 | 479 | 1.51e-35 | 144 |
| Msa1322290 | MtrunA17_Chr3g0080351 | 23.421 | 649 | 431 | 15 | 34 | 664 | 75 | 675 | 2.98e-35 | 143 |
| Msa1322290 | MtrunA17_Chr5g0448511 | 27.097 | 310 | 218 | 4 | 216 | 523 | 1 | 304 | 1.05e-34 | 139 |
| Msa1322290 | MtrunA17_Chr2g0287061 | 24.950 | 501 | 302 | 15 | 41 | 536 | 189 | 620 | 1.66e-34 | 141 |
| Msa1322290 | MtrunA17_Chr2g0291581 | 24.554 | 448 | 299 | 7 | 38 | 484 | 74 | 483 | 3.48e-34 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322290 | AT4G38180.1 | 27.660 | 470 | 317 | 6 | 32 | 499 | 70 | 518 | 1.05e-56 | 207 |
| Msa1322290 | AT4G15090.1 | 25.577 | 477 | 327 | 9 | 50 | 523 | 66 | 517 | 3.15e-41 | 162 |
| Msa1322290 | AT4G15090.5 | 25.577 | 477 | 327 | 9 | 50 | 523 | 66 | 517 | 3.15e-41 | 162 |
| Msa1322290 | AT4G15090.3 | 25.577 | 477 | 327 | 9 | 50 | 523 | 66 | 517 | 3.15e-41 | 162 |
| Msa1322290 | AT4G15090.2 | 25.577 | 477 | 327 | 9 | 50 | 523 | 66 | 517 | 3.15e-41 | 162 |
| Msa1322290 | AT4G15090.4 | 25.577 | 477 | 327 | 9 | 50 | 523 | 66 | 517 | 3.15e-41 | 162 |
| Msa1322290 | AT3G06250.2 | 25.969 | 516 | 301 | 14 | 34 | 540 | 189 | 632 | 4.20e-40 | 158 |
| Msa1322290 | AT3G06250.1 | 25.969 | 516 | 301 | 14 | 34 | 540 | 189 | 632 | 4.20e-40 | 158 |
| Msa1322290 | AT3G06250.3 | 25.969 | 516 | 301 | 14 | 34 | 540 | 189 | 632 | 4.20e-40 | 158 |
| Msa1322290 | AT2G27110.2 | 23.300 | 691 | 424 | 19 | 4 | 666 | 23 | 635 | 1.14e-38 | 154 |
| Msa1322290 | AT2G27110.1 | 23.300 | 691 | 424 | 19 | 4 | 666 | 23 | 635 | 1.14e-38 | 154 |
| Msa1322290 | AT1G76320.3 | 26.049 | 453 | 293 | 11 | 50 | 496 | 12 | 428 | 1.43e-38 | 153 |
| Msa1322290 | AT2G27110.3 | 25.417 | 480 | 307 | 11 | 213 | 666 | 36 | 490 | 2.32e-38 | 152 |
| Msa1322290 | AT1G76320.1 | 25.277 | 451 | 299 | 9 | 50 | 496 | 12 | 428 | 3.26e-38 | 152 |
| Msa1322290 | AT1G76320.4 | 25.277 | 451 | 299 | 9 | 50 | 496 | 12 | 428 | 3.26e-38 | 152 |
| Msa1322290 | AT1G76320.2 | 25.277 | 451 | 299 | 9 | 50 | 496 | 12 | 428 | 4.08e-38 | 152 |
| Msa1322290 | AT1G10240.2 | 25.050 | 499 | 335 | 12 | 49 | 536 | 62 | 532 | 4.49e-38 | 151 |
| Msa1322290 | AT1G10240.1 | 25.050 | 499 | 335 | 12 | 49 | 536 | 62 | 532 | 4.49e-38 | 151 |
| Msa1322290 | AT4G38170.1 | 28.082 | 292 | 198 | 5 | 235 | 523 | 24 | 306 | 4.33e-37 | 147 |
| Msa1322290 | AT5G28530.1 | 24.663 | 519 | 344 | 14 | 40 | 540 | 60 | 549 | 1.22e-36 | 147 |
| Msa1322290 | AT5G28530.3 | 24.470 | 519 | 341 | 15 | 40 | 540 | 60 | 545 | 8.19e-36 | 144 |
| Msa1322290 | AT5G28530.2 | 24.470 | 519 | 341 | 15 | 40 | 540 | 60 | 545 | 8.19e-36 | 144 |
| Msa1322290 | AT3G22170.2 | 23.200 | 500 | 332 | 11 | 34 | 523 | 69 | 526 | 1.03e-34 | 142 |
| Msa1322290 | AT3G22170.1 | 23.200 | 500 | 332 | 11 | 34 | 523 | 69 | 526 | 1.03e-34 | 142 |
| Msa1322290 | AT5G18960.2 | 24.621 | 528 | 316 | 16 | 24 | 540 | 200 | 656 | 1.66e-34 | 141 |
| Msa1322290 | AT5G18960.1 | 24.621 | 528 | 316 | 16 | 24 | 540 | 200 | 656 | 1.66e-34 | 141 |
| Msa1322290 | AT1G80010.1 | 26.116 | 448 | 292 | 15 | 41 | 478 | 101 | 519 | 2.92e-31 | 131 |
| Msa1322290 | AT2G32250.5 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 1.97e-30 | 128 |
| Msa1322290 | AT2G32250.6 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 3.17e-30 | 128 |
| Msa1322290 | AT2G32250.1 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 3.17e-30 | 128 |
| Msa1322290 | AT2G32250.3 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 3.17e-30 | 128 |
| Msa1322290 | AT2G32250.2 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 3.18e-30 | 128 |
| Msa1322290 | AT2G32250.4 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 3.18e-30 | 128 |
| Msa1322290 | AT2G32250.7 | 24.283 | 453 | 269 | 11 | 50 | 496 | 12 | 396 | 8.10e-30 | 126 |
| Msa1322290 | AT2G32250.8 | 24.449 | 454 | 267 | 12 | 50 | 496 | 12 | 396 | 8.96e-30 | 126 |
| Msa1322290 | AT1G52520.1 | 22.326 | 533 | 361 | 15 | 41 | 557 | 91 | 586 | 2.13e-28 | 122 |
| Msa1322290 | AT4G19990.5 | 27.985 | 268 | 186 | 4 | 219 | 483 | 163 | 426 | 1.75e-26 | 116 |
| Msa1322290 | AT4G19990.3 | 27.985 | 268 | 186 | 4 | 219 | 483 | 163 | 426 | 2.04e-26 | 115 |
| Msa1322290 | AT4G19990.4 | 27.985 | 268 | 186 | 4 | 219 | 483 | 163 | 426 | 2.04e-26 | 115 |
| Msa1322290 | AT4G19990.1 | 27.985 | 268 | 186 | 4 | 219 | 483 | 106 | 369 | 2.15e-26 | 115 |
| Msa1322290 | AT4G19990.7 | 27.985 | 268 | 186 | 4 | 219 | 483 | 177 | 440 | 2.53e-26 | 115 |
| Msa1322290 | AT4G19990.6 | 27.985 | 268 | 186 | 4 | 219 | 483 | 163 | 426 | 3.14e-26 | 115 |
| Msa1322290 | AT4G19990.2 | 27.985 | 268 | 186 | 4 | 219 | 483 | 163 | 426 | 3.14e-26 | 115 |
| Msa1322290 | AT5G28530.4 | 21.807 | 509 | 308 | 17 | 40 | 540 | 60 | 486 | 1.66e-17 | 87.4 |
Find 110 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 8_4:+29154754 | Msa1322290:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 8_4:-29155870 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 8_4:+29155021 | Msa1322290:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 8_4:+29154473 | Msa1322290:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 8_4:+29153960 | Msa1322290:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 8_4:+29154506 | Msa1322290:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 8_4:-29154600 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 8_4:-29155864 | None:intergenic |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 8_4:+29155716 | Msa1322290:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 8_4:-29154618 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 8_4:-29154010 | None:intergenic |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 8_4:-29155932 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 8_4:+29155318 | Msa1322290:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 8_4:-29155592 | None:intergenic |
| TACACGTGTTTGCGCAAATC+CGG | 0.370641 | 8_4:+29155668 | Msa1322290:CDS |
| GAGGGATAATCATACTGATT+TGG | 0.375922 | 8_4:+29155054 | Msa1322290:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 8_4:+29155708 | Msa1322290:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 8_4:+29154017 | Msa1322290:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 8_4:+29154009 | Msa1322290:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 8_4:+29153097 | None:intergenic |
| TCATACTGATTTGGACTTCA+AGG | 0.395582 | 8_4:+29155063 | Msa1322290:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 8_4:-29153480 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 8_4:+29155856 | Msa1322290:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 8_4:-29155846 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 8_4:+29155195 | Msa1322290:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 8_4:-29153241 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 8_4:+29153251 | Msa1322290:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 8_4:-29155366 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 8_4:+29153322 | Msa1322290:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 8_4:-29155367 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 8_4:+29153657 | Msa1322290:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 8_4:+29153539 | Msa1322290:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 8_4:+29153571 | Msa1322290:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 8_4:-29154611 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 8_4:+29153522 | Msa1322290:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 8_4:+29153687 | Msa1322290:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 8_4:+29154895 | Msa1322290:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 8_4:+29153176 | Msa1322290:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 8_4:+29154685 | Msa1322290:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 8_4:+29154849 | Msa1322290:CDS |
| AGAAATATTTCAGATGCCTC+CGG | 0.468885 | 8_4:-29155687 | None:intergenic |
| CTAAAGTAGCGCAAATGCTC+TGG | 0.477802 | 8_4:-29153627 | None:intergenic |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 8_4:+29154894 | Msa1322290:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 8_4:+29153732 | Msa1322290:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 8_4:-29155197 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 8_4:-29153516 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 8_4:+29153309 | Msa1322290:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 8_4:+29155817 | Msa1322290:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 8_4:+29153800 | Msa1322290:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 8_4:+29155211 | Msa1322290:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 8_4:-29154486 | None:intergenic |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 8_4:+29153813 | Msa1322290:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 8_4:+29155035 | Msa1322290:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 8_4:-29155115 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 8_4:+29153719 | Msa1322290:CDS |
| ATTGGTCTTCAGCTTGGGTG+AGG | 0.501327 | 8_4:+29154900 | Msa1322290:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 8_4:-29153905 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 8_4:+29155816 | Msa1322290:CDS |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 8_4:+29154882 | Msa1322290:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 8_4:+29155380 | Msa1322290:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 8_4:-29153771 | None:intergenic |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 8_4:-29155360 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 8_4:-29155003 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 8_4:+29153575 | Msa1322290:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 8_4:+29155381 | Msa1322290:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 8_4:-29155192 | None:intergenic |
| ACAAAATAAGAAATCAGATA+AGG | 0.530342 | 8_4:+29153371 | Msa1322290:CDS |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 8_4:+29155922 | Msa1322290:CDS |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 8_4:+29155582 | Msa1322290:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 8_4:+29153416 | Msa1322290:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 8_4:-29154998 | None:intergenic |
| TGTTATGCTTGTAACAAAGA+AGG | 0.541604 | 8_4:+29153405 | Msa1322290:CDS |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 8_4:+29155212 | Msa1322290:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 8_4:+29153241 | Msa1322290:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 8_4:+29153417 | Msa1322290:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 8_4:-29153615 | None:intergenic |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 8_4:-29154631 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 8_4:+29153867 | Msa1322290:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 8_4:+29153200 | Msa1322290:CDS |
| TGAAGACTTAGAAGAAGTAA+CGG | 0.566856 | 8_4:-29155784 | None:intergenic |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 8_4:+29153735 | Msa1322290:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 8_4:-29155116 | None:intergenic |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.580876 | 8_4:+29155350 | Msa1322290:CDS |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 8_4:-29155828 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 8_4:+29155947 | Msa1322290:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 8_4:-29155137 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 8_4:+29153726 | Msa1322290:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 8_4:+29155709 | Msa1322290:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 8_4:+29154617 | Msa1322290:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 8_4:+29155704 | Msa1322290:CDS |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 8_4:+29153806 | Msa1322290:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 8_4:-29155616 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 8_4:+29153720 | Msa1322290:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 8_4:+29153809 | Msa1322290:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 8_4:+29155113 | Msa1322290:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 8_4:+29155198 | Msa1322290:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 8_4:+29153165 | Msa1322290:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 8_4:-29153465 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 8_4:-29154851 | None:intergenic |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 8_4:-29155365 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 8_4:+29154686 | Msa1322290:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 8_4:+29155036 | Msa1322290:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 8_4:+29153574 | Msa1322290:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 8_4:-29155567 | None:intergenic |
| ACGTGTTTGCGCAAATCCGG+AGG | 0.655332 | 8_4:+29155671 | Msa1322290:CDS |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 8_4:-29155157 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 8_4:+29155693 | Msa1322290:CDS |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 8_4:+29154613 | Msa1322290:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 8_4:+29155296 | Msa1322290:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 8_4:+29155297 | Msa1322290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTATGCATATAACAC+TGG | + | chr8_4:29153309-29153328 | Msa1322290:CDS | 20.0% |
| !! | ACAAAATAAGAAATCAGATA+AGG | + | chr8_4:29153371-29153390 | Msa1322290:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | + | chr8_4:29153571-29153590 | Msa1322290:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr8_4:29154164-29154183 | Msa1322290:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr8_4:29154192-29154211 | Msa1322290:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr8_4:29154824-29154843 | Msa1322290:CDS | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr8_4:29153200-29153219 | Msa1322290:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr8_4:29153361-29153380 | None:intergenic | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | + | chr8_4:29153574-29153593 | Msa1322290:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | + | chr8_4:29153575-29153594 | Msa1322290:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr8_4:29153687-29153706 | Msa1322290:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr8_4:29153922-29153941 | Msa1322290:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | chr8_4:29153923-29153942 | Msa1322290:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr8_4:29154009-29154028 | Msa1322290:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr8_4:29154035-29154054 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr8_4:29154082-29154101 | Msa1322290:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr8_4:29154184-29154203 | Msa1322290:intron | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr8_4:29154191-29154210 | Msa1322290:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr8_4:29154444-29154463 | Msa1322290:intron | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr8_4:29154662-29154681 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr8_4:29154754-29154773 | Msa1322290:CDS | 25.0% |
| !!! | AATCAGATTTTGACTACAAT+TGG | + | chr8_4:29154795-29154814 | Msa1322290:CDS | 25.0% |
| !!! | ATCAGATTTTGACTACAATT+GGG | + | chr8_4:29154796-29154815 | Msa1322290:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr8_4:29154828-29154847 | Msa1322290:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr8_4:29155021-29155040 | Msa1322290:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr8_4:29155160-29155179 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr8_4:29155195-29155214 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr8_4:29155195-29155214 | Msa1322290:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr8_4:29155296-29155315 | Msa1322290:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr8_4:29155297-29155316 | Msa1322290:CDS | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | - | chr8_4:29153244-29153263 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | + | chr8_4:29153241-29153260 | Msa1322290:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr8_4:29153251-29153270 | Msa1322290:CDS | 30.0% | |
| TGTTATGCTTGTAACAAAGA+AGG | + | chr8_4:29153405-29153424 | Msa1322290:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr8_4:29153416-29153435 | Msa1322290:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr8_4:29153417-29153436 | Msa1322290:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr8_4:29153506-29153525 | Msa1322290:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr8_4:29153539-29153558 | Msa1322290:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr8_4:29153618-29153637 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | + | chr8_4:29153720-29153739 | Msa1322290:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr8_4:29153764-29153783 | Msa1322290:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr8_4:29153774-29153793 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr8_4:29153888-29153907 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr8_4:29153960-29153979 | Msa1322290:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr8_4:29154013-29154032 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr8_4:29154017-29154036 | Msa1322290:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr8_4:29154096-29154115 | Msa1322290:intron | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | + | chr8_4:29154121-29154140 | Msa1322290:intron | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | - | chr8_4:29154255-29154274 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr8_4:29154403-29154422 | Msa1322290:intron | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr8_4:29154489-29154508 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr8_4:29154603-29154622 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr8_4:29154653-29154672 | Msa1322290:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr8_4:29154665-29154684 | Msa1322290:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr8_4:29154710-29154729 | Msa1322290:CDS | 30.0% | |
| ! | TCTTTTAATGCTTTTCTTCG+TGG | + | chr8_4:29154965-29154984 | Msa1322290:CDS | 30.0% |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr8_4:29155006-29155025 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr8_4:29155140-29155159 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr8_4:29155200-29155219 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr8_4:29155198-29155217 | Msa1322290:CDS | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | + | chr8_4:29155255-29155274 | Msa1322290:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | - | chr8_4:29155368-29155387 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr8_4:29155369-29155388 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr8_4:29155380-29155399 | Msa1322290:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr8_4:29155381-29155400 | Msa1322290:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr8_4:29155477-29155496 | Msa1322290:intron | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr8_4:29155480-29155499 | Msa1322290:intron | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr8_4:29155526-29155545 | Msa1322290:intron | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | + | chr8_4:29155693-29155712 | Msa1322290:CDS | 30.0% |
| ! | GAGGAGTTTCTTCTTTTTAA+AGG | + | chr8_4:29155741-29155760 | Msa1322290:CDS | 30.0% |
| TGAAGACTTAGAAGAAGTAA+CGG | - | chr8_4:29155787-29155806 | None:intergenic | 30.0% | |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr8_4:29155849-29155868 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | + | chr8_4:29155856-29155875 | Msa1322290:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | - | chr8_4:29155867-29155886 | None:intergenic | 30.0% | |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr8_4:29153137-29153156 | Msa1322290:exon | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | + | chr8_4:29153165-29153184 | Msa1322290:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr8_4:29153322-29153341 | Msa1322290:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr8_4:29153442-29153461 | Msa1322290:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr8_4:29153483-29153502 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr8_4:29153500-29153519 | Msa1322290:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr8_4:29153505-29153524 | Msa1322290:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr8_4:29153657-29153676 | Msa1322290:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr8_4:29153719-29153738 | Msa1322290:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr8_4:29153800-29153819 | Msa1322290:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr8_4:29154102-29154121 | Msa1322290:intron | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | - | chr8_4:29154222-29154241 | None:intergenic | 35.0% |
| TGTACAGAGCACAAATTCTA+AGG | - | chr8_4:29154231-29154250 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr8_4:29154506-29154525 | Msa1322290:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr8_4:29154549-29154568 | Msa1322290:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr8_4:29154678-29154697 | Msa1322290:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | + | chr8_4:29154838-29154857 | Msa1322290:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | + | chr8_4:29154882-29154901 | Msa1322290:CDS | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr8_4:29155035-29155054 | Msa1322290:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr8_4:29155036-29155055 | Msa1322290:CDS | 35.0% | |
| ! | GAGGGATAATCATACTGATT+TGG | + | chr8_4:29155054-29155073 | Msa1322290:CDS | 35.0% |
| !! | TCATACTGATTTGGACTTCA+AGG | + | chr8_4:29155063-29155082 | Msa1322290:CDS | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | + | chr8_4:29155318-29155337 | Msa1322290:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | - | chr8_4:29155370-29155389 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr8_4:29155487-29155506 | Msa1322290:intron | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr8_4:29155528-29155547 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr8_4:29155529-29155548 | Msa1322290:intron | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | + | chr8_4:29155582-29155601 | Msa1322290:CDS | 35.0% | |
| AGAAATATTTCAGATGCCTC+CGG | - | chr8_4:29155690-29155709 | None:intergenic | 35.0% | |
| GACAGAAATTCCTTATAGCT+CGG | + | chr8_4:29155922-29155941 | Msa1322290:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | + | chr8_4:29155947-29155966 | Msa1322290:CDS | 35.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr8_4:29153176-29153195 | Msa1322290:CDS | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr8_4:29153456-29153475 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr8_4:29153726-29153745 | Msa1322290:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr8_4:29153930-29153949 | Msa1322290:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr8_4:29154349-29154368 | Msa1322290:intron | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr8_4:29154353-29154372 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | + | chr8_4:29154473-29154492 | Msa1322290:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr8_4:29154614-29154633 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr8_4:29154613-29154632 | Msa1322290:CDS | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr8_4:29154895-29154914 | Msa1322290:CDS | 40.0% |
| ! | GTGAGGTCACATTTTACAAC+TGG | + | chr8_4:29154917-29154936 | Msa1322290:CDS | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr8_4:29155001-29155020 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr8_4:29155211-29155230 | Msa1322290:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr8_4:29155212-29155231 | Msa1322290:CDS | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr8_4:29155350-29155369 | Msa1322290:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr8_4:29155443-29155462 | Msa1322290:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr8_4:29155444-29155463 | Msa1322290:intron | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr8_4:29155490-29155509 | Msa1322290:intron | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | - | chr8_4:29155570-29155589 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | - | chr8_4:29155595-29155614 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr8_4:29155619-29155638 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | + | chr8_4:29155704-29155723 | Msa1322290:CDS | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | - | chr8_4:29155873-29155892 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | - | chr8_4:29155935-29155954 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr8_4:29153468-29153487 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr8_4:29153510-29153529 | Msa1322290:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr8_4:29153519-29153538 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr8_4:29153522-29153541 | Msa1322290:CDS | 45.0% |
| CTAAAGTAGCGCAAATGCTC+TGG | - | chr8_4:29153630-29153649 | None:intergenic | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr8_4:29153806-29153825 | Msa1322290:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr8_4:29153809-29153828 | Msa1322290:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr8_4:29153867-29153886 | Msa1322290:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr8_4:29153908-29153927 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | + | chr8_4:29154235-29154254 | Msa1322290:intron | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | - | chr8_4:29154854-29154873 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr8_4:29154894-29154913 | Msa1322290:CDS | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr8_4:29155113-29155132 | Msa1322290:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr8_4:29155363-29155382 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr8_4:29155445-29155464 | Msa1322290:intron | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr8_4:29155465-29155484 | None:intergenic | 45.0% | |
| TACACGTGTTTGCGCAAATC+CGG | + | chr8_4:29155668-29155687 | Msa1322290:CDS | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | + | chr8_4:29155716-29155735 | Msa1322290:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | + | chr8_4:29155817-29155836 | Msa1322290:CDS | 45.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr8_4:29153732-29153751 | Msa1322290:CDS | 50.0% |
| ACCATATACACAGACCAGGC+TGG | + | chr8_4:29154617-29154636 | Msa1322290:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr8_4:29154621-29154640 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr8_4:29154685-29154704 | Msa1322290:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr8_4:29154686-29154705 | Msa1322290:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | + | chr8_4:29154849-29154868 | Msa1322290:CDS | 50.0% | |
| !! | ATTGGTCTTCAGCTTGGGTG+AGG | + | chr8_4:29154900-29154919 | Msa1322290:CDS | 50.0% |
| GACCGCATAAGCTGACTGTT+GGG | - | chr8_4:29155118-29155137 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | + | chr8_4:29155401-29155420 | Msa1322290:intron | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | + | chr8_4:29155709-29155728 | Msa1322290:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | + | chr8_4:29155816-29155835 | Msa1322290:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr8_4:29155831-29155850 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr8_4:29153735-29153754 | Msa1322290:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr8_4:29153813-29153832 | Msa1322290:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr8_4:29154634-29154653 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr8_4:29155119-29155138 | None:intergenic | 55.0% | |
| ACGTGTTTGCGCAAATCCGG+AGG | + | chr8_4:29155671-29155690 | Msa1322290:CDS | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | + | chr8_4:29155708-29155727 | Msa1322290:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | + | chr8_4:29155722-29155741 | Msa1322290:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 29153111 | 29155983 | 29153111 | ID=Msa1322290;Name=Msa1322290 |
| chr8_4 | mRNA | 29153111 | 29155983 | 29153111 | ID=Msa1322290-mRNA-1;Parent=Msa1322290;Name=Msa1322290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=45|0.5|0.33|1|1|1|3|0|746 |
| chr8_4 | exon | 29153111 | 29154038 | 29153111 | ID=Msa1322290-mRNA-1:exon:9669;Parent=Msa1322290-mRNA-1 |
| chr8_4 | exon | 29154483 | 29155402 | 29154483 | ID=Msa1322290-mRNA-1:exon:9670;Parent=Msa1322290-mRNA-1 |
| chr8_4 | exon | 29155546 | 29155983 | 29155546 | ID=Msa1322290-mRNA-1:exon:9671;Parent=Msa1322290-mRNA-1 |
| chr8_4 | five_prime_UTR | 29153111 | 29153155 | 29153111 | ID=Msa1322290-mRNA-1:five_prime_utr;Parent=Msa1322290-mRNA-1 |
| chr8_4 | CDS | 29153156 | 29154038 | 29153156 | ID=Msa1322290-mRNA-1:cds;Parent=Msa1322290-mRNA-1 |
| chr8_4 | CDS | 29154483 | 29155402 | 29154483 | ID=Msa1322290-mRNA-1:cds;Parent=Msa1322290-mRNA-1 |
| chr8_4 | CDS | 29155546 | 29155983 | 29155546 | ID=Msa1322290-mRNA-1:cds;Parent=Msa1322290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
