Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322830 | XP_039685680.1 | 84.758 | 807 | 82 | 4 | 1 | 773 | 1 | 800 | 0.0 | 1398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322830 | sp|Q9SZL8|FRS5_ARATH | 27.141 | 619 | 388 | 14 | 50 | 658 | 72 | 637 | 3.75e-70 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322830 | D3YBB9 | 74.198 | 810 | 161 | 7 | 14 | 791 | 54 | 847 | 0.0 | 1217 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1322830 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322830 | MtrunA17_Chr3g0082121 | 30.285 | 667 | 402 | 13 | 57 | 720 | 49 | 655 | 5.66e-102 | 330 |
| Msa1322830 | MtrunA17_Chr3g0088371 | 82.609 | 184 | 29 | 1 | 611 | 791 | 1 | 184 | 1.41e-101 | 311 |
| Msa1322830 | MtrunA17_Chr2g0324011 | 31.280 | 617 | 361 | 13 | 52 | 658 | 8 | 571 | 7.82e-100 | 321 |
| Msa1322830 | MtrunA17_Chr1g0202341 | 29.805 | 614 | 369 | 15 | 50 | 655 | 50 | 609 | 5.93e-82 | 276 |
| Msa1322830 | MtrunA17_Chr8g0363841 | 28.878 | 606 | 381 | 14 | 56 | 658 | 22 | 580 | 6.48e-77 | 262 |
| Msa1322830 | MtrunA17_Chr1g0203721 | 26.649 | 743 | 471 | 20 | 13 | 736 | 18 | 705 | 1.31e-74 | 260 |
| Msa1322830 | MtrunA17_Chr5g0448761 | 26.308 | 707 | 457 | 16 | 40 | 734 | 47 | 701 | 1.85e-73 | 255 |
| Msa1322830 | MtrunA17_Chr2g0296781 | 27.744 | 656 | 411 | 15 | 55 | 701 | 1 | 602 | 2.15e-72 | 251 |
| Msa1322830 | MtrunA17_Chr6g0477261 | 29.592 | 490 | 317 | 8 | 196 | 682 | 7 | 471 | 6.53e-67 | 234 |
| Msa1322830 | MtrunA17_Chr6g0458391 | 28.073 | 602 | 363 | 15 | 57 | 655 | 231 | 765 | 6.28e-64 | 228 |
| Msa1322830 | MtrunA17_Chr1g0164591 | 34.375 | 320 | 195 | 4 | 147 | 464 | 1 | 307 | 9.94e-63 | 214 |
| Msa1322830 | MtrunA17_Chr5g0441581 | 26.859 | 659 | 393 | 20 | 39 | 682 | 25 | 609 | 2.18e-62 | 223 |
| Msa1322830 | MtrunA17_Chr2g0287651 | 25.781 | 640 | 418 | 12 | 21 | 655 | 45 | 632 | 1.85e-61 | 223 |
| Msa1322830 | MtrunA17_Chr1g0207551 | 25.426 | 704 | 440 | 18 | 22 | 711 | 9 | 641 | 7.67e-60 | 217 |
| Msa1322830 | MtrunA17_Chr2g0329031 | 25.436 | 688 | 432 | 17 | 39 | 716 | 2 | 618 | 7.30e-59 | 213 |
| Msa1322830 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 4.98e-57 | 204 |
| Msa1322830 | MtrunA17_Chr3g0080351 | 25.493 | 710 | 438 | 19 | 15 | 711 | 44 | 675 | 7.45e-56 | 206 |
| Msa1322830 | MtrunA17_Chr1g0196541 | 25.164 | 608 | 396 | 12 | 55 | 655 | 1 | 556 | 2.44e-54 | 200 |
| Msa1322830 | MtrunA17_Chr5g0440451 | 24.899 | 739 | 457 | 22 | 1 | 716 | 1 | 664 | 3.39e-54 | 202 |
| Msa1322830 | MtrunA17_Chr7g0258861 | 35.256 | 312 | 178 | 6 | 46 | 352 | 2 | 294 | 4.01e-54 | 189 |
| Msa1322830 | MtrunA17_Chr1g0198761 | 26.829 | 615 | 385 | 17 | 52 | 653 | 48 | 610 | 2.22e-51 | 192 |
| Msa1322830 | MtrunA17_Chr1g0203051 | 24.696 | 575 | 371 | 14 | 66 | 630 | 94 | 616 | 9.67e-51 | 188 |
| Msa1322830 | MtrunA17_Chr2g0276841 | 28.079 | 609 | 361 | 24 | 65 | 657 | 84 | 631 | 1.12e-49 | 186 |
| Msa1322830 | MtrunA17_Chr3g0118611 | 27.027 | 481 | 312 | 12 | 237 | 712 | 111 | 557 | 1.48e-48 | 184 |
| Msa1322830 | MtrunA17_Chr2g0287061 | 25.123 | 609 | 356 | 15 | 57 | 658 | 189 | 704 | 1.68e-48 | 184 |
| Msa1322830 | MtrunA17_Chr5g0448511 | 26.218 | 431 | 283 | 8 | 232 | 658 | 1 | 400 | 7.71e-45 | 169 |
| Msa1322830 | MtrunA17_Chr2g0291591 | 26.071 | 560 | 347 | 17 | 14 | 552 | 29 | 542 | 3.14e-44 | 168 |
| Msa1322830 | MtrunA17_Chr2g0290391 | 25.446 | 617 | 382 | 18 | 55 | 653 | 55 | 611 | 3.80e-44 | 170 |
| Msa1322830 | MtrunA17_Chr2g0291581 | 24.466 | 609 | 392 | 14 | 54 | 655 | 74 | 621 | 5.92e-44 | 169 |
| Msa1322830 | MtrunA17_Chr6g0475591 | 95.890 | 73 | 3 | 0 | 204 | 276 | 1 | 73 | 6.51e-43 | 150 |
| Msa1322830 | MtrunA17_Chr5g0431001 | 27.578 | 446 | 288 | 12 | 56 | 489 | 66 | 488 | 1.05e-41 | 159 |
| Msa1322830 | MtrunA17_Chr2g0294841 | 25.361 | 623 | 366 | 21 | 57 | 650 | 51 | 603 | 6.94e-41 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1322830 | AT4G38180.1 | 27.141 | 619 | 388 | 14 | 50 | 658 | 72 | 637 | 3.81e-71 | 249 |
| Msa1322830 | AT4G15090.1 | 25.874 | 715 | 455 | 18 | 66 | 766 | 66 | 719 | 1.39e-61 | 223 |
| Msa1322830 | AT4G15090.5 | 25.874 | 715 | 455 | 18 | 66 | 766 | 66 | 719 | 1.39e-61 | 223 |
| Msa1322830 | AT4G15090.3 | 25.874 | 715 | 455 | 18 | 66 | 766 | 66 | 719 | 1.39e-61 | 223 |
| Msa1322830 | AT4G15090.2 | 25.874 | 715 | 455 | 18 | 66 | 766 | 66 | 719 | 1.39e-61 | 223 |
| Msa1322830 | AT4G15090.4 | 25.874 | 715 | 455 | 18 | 66 | 766 | 66 | 719 | 1.39e-61 | 223 |
| Msa1322830 | AT1G76320.3 | 25.399 | 689 | 428 | 18 | 57 | 735 | 3 | 615 | 3.42e-54 | 199 |
| Msa1322830 | AT1G76320.2 | 24.819 | 689 | 436 | 16 | 55 | 735 | 1 | 615 | 8.19e-54 | 199 |
| Msa1322830 | AT1G76320.1 | 24.819 | 689 | 436 | 16 | 55 | 735 | 1 | 615 | 9.78e-54 | 199 |
| Msa1322830 | AT1G76320.4 | 24.819 | 689 | 436 | 16 | 55 | 735 | 1 | 615 | 9.78e-54 | 199 |
| Msa1322830 | AT3G06250.2 | 26.003 | 623 | 357 | 16 | 39 | 654 | 178 | 703 | 6.06e-53 | 197 |
| Msa1322830 | AT3G06250.1 | 26.003 | 623 | 357 | 16 | 39 | 654 | 178 | 703 | 6.06e-53 | 197 |
| Msa1322830 | AT3G06250.3 | 26.003 | 623 | 357 | 16 | 39 | 654 | 178 | 703 | 6.06e-53 | 197 |
| Msa1322830 | AT2G27110.3 | 25.347 | 576 | 386 | 12 | 229 | 796 | 36 | 575 | 6.72e-52 | 193 |
| Msa1322830 | AT2G27110.2 | 25.650 | 577 | 383 | 14 | 229 | 796 | 181 | 720 | 1.41e-51 | 194 |
| Msa1322830 | AT2G27110.1 | 25.650 | 577 | 383 | 14 | 229 | 796 | 181 | 720 | 1.41e-51 | 194 |
| Msa1322830 | AT3G22170.2 | 23.752 | 661 | 429 | 15 | 48 | 701 | 67 | 659 | 2.42e-49 | 187 |
| Msa1322830 | AT3G22170.1 | 23.752 | 661 | 429 | 15 | 48 | 701 | 67 | 659 | 2.42e-49 | 187 |
| Msa1322830 | AT5G18960.2 | 24.744 | 683 | 411 | 20 | 37 | 712 | 197 | 783 | 6.24e-48 | 182 |
| Msa1322830 | AT5G18960.1 | 24.744 | 683 | 411 | 20 | 37 | 712 | 197 | 783 | 6.24e-48 | 182 |
| Msa1322830 | AT1G10240.2 | 26.325 | 604 | 368 | 21 | 65 | 652 | 62 | 604 | 5.00e-47 | 179 |
| Msa1322830 | AT1G10240.1 | 26.325 | 604 | 368 | 21 | 65 | 652 | 62 | 604 | 5.00e-47 | 179 |
| Msa1322830 | AT4G19990.5 | 24.094 | 635 | 395 | 15 | 57 | 682 | 27 | 583 | 3.28e-44 | 171 |
| Msa1322830 | AT4G19990.7 | 24.094 | 635 | 395 | 15 | 57 | 682 | 41 | 597 | 4.17e-44 | 171 |
| Msa1322830 | AT4G19990.6 | 23.780 | 635 | 397 | 14 | 57 | 682 | 27 | 583 | 4.29e-44 | 171 |
| Msa1322830 | AT4G19990.2 | 23.780 | 635 | 397 | 14 | 57 | 682 | 27 | 583 | 4.29e-44 | 171 |
| Msa1322830 | AT4G19990.3 | 24.094 | 635 | 395 | 15 | 57 | 682 | 27 | 583 | 4.52e-44 | 171 |
| Msa1322830 | AT4G19990.4 | 24.094 | 635 | 395 | 15 | 57 | 682 | 27 | 583 | 4.52e-44 | 171 |
| Msa1322830 | AT2G32250.5 | 23.874 | 733 | 445 | 21 | 24 | 748 | 13 | 640 | 1.65e-43 | 169 |
| Msa1322830 | AT4G38170.1 | 24.051 | 474 | 306 | 11 | 251 | 712 | 24 | 455 | 1.67e-43 | 166 |
| Msa1322830 | AT2G32250.2 | 23.874 | 733 | 445 | 21 | 24 | 748 | 13 | 640 | 2.03e-43 | 169 |
| Msa1322830 | AT2G32250.4 | 23.874 | 733 | 445 | 21 | 24 | 748 | 13 | 640 | 2.03e-43 | 169 |
| Msa1322830 | AT2G32250.6 | 23.874 | 733 | 445 | 21 | 24 | 748 | 13 | 640 | 2.57e-43 | 169 |
| Msa1322830 | AT2G32250.1 | 23.874 | 733 | 445 | 21 | 24 | 748 | 13 | 640 | 2.57e-43 | 169 |
| Msa1322830 | AT2G32250.3 | 23.874 | 733 | 445 | 21 | 24 | 748 | 13 | 640 | 2.57e-43 | 169 |
| Msa1322830 | AT1G80010.1 | 25.405 | 618 | 385 | 20 | 57 | 655 | 101 | 661 | 3.28e-43 | 168 |
| Msa1322830 | AT2G32250.7 | 24.000 | 700 | 421 | 20 | 57 | 748 | 3 | 599 | 5.27e-43 | 167 |
| Msa1322830 | AT5G28530.1 | 25.487 | 616 | 385 | 17 | 56 | 653 | 60 | 619 | 5.32e-43 | 167 |
| Msa1322830 | AT2G32250.8 | 24.000 | 700 | 421 | 20 | 57 | 748 | 3 | 599 | 5.45e-43 | 167 |
| Msa1322830 | AT4G19990.1 | 26.477 | 457 | 291 | 9 | 235 | 682 | 106 | 526 | 7.08e-43 | 166 |
| Msa1322830 | AT5G28530.3 | 25.487 | 616 | 381 | 18 | 56 | 653 | 60 | 615 | 4.22e-42 | 164 |
| Msa1322830 | AT5G28530.2 | 25.487 | 616 | 381 | 18 | 56 | 653 | 60 | 615 | 4.22e-42 | 164 |
| Msa1322830 | AT1G52520.1 | 23.383 | 603 | 403 | 15 | 57 | 655 | 91 | 638 | 2.39e-37 | 150 |
| Msa1322830 | AT5G28530.4 | 23.267 | 606 | 348 | 20 | 56 | 653 | 60 | 556 | 3.91e-24 | 108 |
| Msa1322830 | AT5G28530.5 | 23.267 | 606 | 344 | 21 | 56 | 653 | 60 | 552 | 2.53e-23 | 105 |
Find 108 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 8_4:+30250002 | Msa1322830:CDS |
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 8_4:-30250820 | None:intergenic |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 8_4:+30249412 | Msa1322830:intron |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 8_4:+30249960 | Msa1322830:CDS |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 8_4:-30249539 | None:intergenic |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 8_4:-30250814 | None:intergenic |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 8_4:-30248329 | None:intergenic |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 8_4:-30250298 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 8_4:-30248520 | None:intergenic |
| GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 8_4:+30250249 | Msa1322830:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 8_4:+30248836 | Msa1322830:CDS |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 8_4:+30250418 | Msa1322830:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 8_4:-30249816 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 8_4:-30248886 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 8_4:-30249425 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 8_4:+30250658 | Msa1322830:CDS |
| TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 8_4:-30250882 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 8_4:+30248893 | Msa1322830:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 8_4:+30248885 | Msa1322830:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 8_4:+30248595 | Msa1322830:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 8_4:-30250796 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 8_4:+30250134 | Msa1322830:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 8_4:+30249785 | Msa1322830:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 8_4:+30250374 | Msa1322830:CDS |
| GTCTTATGAAGTTATGGGTC+AGG | 0.415385 | 8_4:+30248601 | Msa1322830:CDS |
| GAAGTTATGGGTCAGGGAGT+TGG | 0.426260 | 8_4:+30248608 | Msa1322830:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 8_4:+30248281 | Msa1322830:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 8_4:-30249598 | None:intergenic |
| GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 8_4:+30250757 | Msa1322830:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 8_4:+30248533 | Msa1322830:CDS |
| TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 8_4:-30250566 | None:intergenic |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 8_4:+30250691 | Msa1322830:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 8_4:-30248118 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 8_4:-30248119 | None:intergenic |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 8_4:-30250788 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 8_4:+30248398 | Msa1322830:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 8_4:+30249834 | Msa1322830:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 8_4:+30248450 | Msa1322830:CDS |
| ACATCAACTTCATCTGATAG+TGG | 0.459514 | 8_4:+30247993 | Msa1322830:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 8_4:+30248563 | Msa1322830:CDS |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 8_4:-30248341 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 8_4:+30248596 | Msa1322830:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 8_4:+30248318 | Msa1322830:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 8_4:-30250475 | None:intergenic |
| GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 8_4:+30250872 | Msa1322830:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 8_4:+30250311 | Msa1322830:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 8_4:+30249833 | Msa1322830:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 8_4:-30248647 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 8_4:-30250136 | None:intergenic |
| CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 8_4:+30250703 | Msa1322830:CDS |
| GATCATGATCTTCAAAACTT+GGG | 0.487945 | 8_4:-30250297 | None:intergenic |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 8_4:+30250457 | Msa1322830:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 8_4:+30250150 | Msa1322830:CDS |
| GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 8_4:-30250542 | None:intergenic |
| TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 8_4:-30250726 | None:intergenic |
| CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 8_4:+30250758 | Msa1322830:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 8_4:+30249974 | Msa1322830:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 8_4:+30248117 | Msa1322830:CDS |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 8_4:-30250787 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 8_4:-30248392 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 8_4:+30248415 | Msa1322830:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 8_4:+30249993 | Msa1322830:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 8_4:+30248247 | Msa1322830:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 8_4:-30248503 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 8_4:-30248078 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 8_4:+30248185 | Msa1322830:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 8_4:+30248292 | Msa1322830:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 8_4:+30248457 | Msa1322830:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 8_4:-30250131 | None:intergenic |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 8_4:+30249624 | Msa1322830:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 8_4:-30248491 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 8_4:-30248117 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 8_4:-30248079 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 8_4:+30250151 | Msa1322830:CDS |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 8_4:-30249937 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 8_4:+30248293 | Msa1322830:CDS |
| GTTATGGGTCAGGGAGTTGG+AGG | 0.547221 | 8_4:+30248611 | Msa1322830:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 8_4:-30249570 | None:intergenic |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 8_4:+30250421 | Msa1322830:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 8_4:+30250375 | Msa1322830:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 8_4:+30249788 | Msa1322830:CDS |
| TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 8_4:+30250742 | Msa1322830:CDS |
| TGAAGCTTTATCAGTGATTG+TGG | 0.572057 | 8_4:+30250915 | Msa1322830:CDS |
| TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 8_4:-30250727 | None:intergenic |
| ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 8_4:-30250296 | None:intergenic |
| ATGAAATCGACCGTCAATGT+TGG | 0.583819 | 8_4:+30250532 | Msa1322830:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 8_4:+30249821 | Msa1322830:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 8_4:+30250226 | Msa1322830:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 8_4:+30248451 | Msa1322830:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 8_4:+30248038 | Msa1322830:CDS |
| TCCAAAACATCAACATTCGA+AGG | 0.607058 | 8_4:-30250250 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 8_4:+30250137 | Msa1322830:CDS |
| TCTTATGAAGTTATGGGTCA+GGG | 0.609153 | 8_4:+30248602 | Msa1322830:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 8_4:+30248340 | Msa1322830:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 8_4:+30250227 | Msa1322830:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 8_4:-30248356 | None:intergenic |
| TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 8_4:+30250759 | Msa1322830:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 8_4:+30249975 | Msa1322830:CDS |
| GAAGCTTTATCAGTGATTGT+GGG | 0.649096 | 8_4:+30250916 | Msa1322830:CDS |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 8_4:-30249550 | None:intergenic |
| GATTTCATCTTATCGACAGA+CGG | 0.652942 | 8_4:-30250517 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 8_4:-30249794 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 8_4:+30250376 | Msa1322830:CDS |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 8_4:-30249942 | None:intergenic |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 8_4:-30250791 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 8_4:-30248077 | None:intergenic |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 8_4:-30249790 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 8_4:+30249552 | Msa1322830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATGAGTTAAATAATT+TGG | + | chr8_4:30249693-30249712 | Msa1322830:CDS | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr8_4:30248164-30248183 | Msa1322830:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | chr8_4:30248450-30248469 | Msa1322830:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | chr8_4:30248451-30248470 | Msa1322830:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr8_4:30248764-30248783 | None:intergenic | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | + | chr8_4:30248954-30248973 | Msa1322830:intron | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | chr8_4:30249184-30249203 | Msa1322830:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr8_4:30249247-30249266 | Msa1322830:intron | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | chr8_4:30249734-30249753 | Msa1322830:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | chr8_4:30249735-30249754 | Msa1322830:CDS | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | + | chr8_4:30249763-30249782 | Msa1322830:CDS | 20.0% |
| !!! | AAAGTTTTCACAATTGATAA+GGG | + | chr8_4:30250195-30250214 | Msa1322830:CDS | 20.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr8_4:30248198-30248217 | Msa1322830:CDS | 25.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | + | chr8_4:30248247-30248266 | Msa1322830:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr8_4:30248798-30248817 | Msa1322830:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | chr8_4:30248836-30248855 | Msa1322830:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr8_4:30248885-30248904 | Msa1322830:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr8_4:30248911-30248930 | None:intergenic | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | + | chr8_4:30249030-30249049 | Msa1322830:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | + | chr8_4:30249054-30249073 | Msa1322830:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | + | chr8_4:30249055-30249074 | Msa1322830:intron | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | chr8_4:30249108-30249127 | Msa1322830:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr8_4:30249132-30249151 | Msa1322830:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr8_4:30249383-30249402 | Msa1322830:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr8_4:30249428-30249447 | None:intergenic | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | + | chr8_4:30249767-30249786 | Msa1322830:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr8_4:30249960-30249979 | Msa1322830:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr8_4:30250134-30250153 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr8_4:30250134-30250153 | Msa1322830:CDS | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | - | chr8_4:30250181-30250200 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | + | chr8_4:30250194-30250213 | Msa1322830:CDS | 25.0% |
| !! | AGAAAAATTTTAGATGACTC+TGG | - | chr8_4:30250640-30250659 | None:intergenic | 25.0% |
| !!! | TCATCTAAAATTTTTCTCGA+CGG | + | chr8_4:30250643-30250662 | Msa1322830:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | - | chr8_4:30250817-30250836 | None:intergenic | 25.0% |
| ! | ATTATGAAAAAGCTAGAGAA+AGG | + | chr8_4:30250851-30250870 | Msa1322830:CDS | 25.0% |
| TCCATGATTCTTTATTGCTA+GGG | - | chr8_4:30248121-30248140 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr8_4:30248122-30248141 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr8_4:30248185-30248204 | Msa1322830:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr8_4:30248281-30248300 | Msa1322830:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr8_4:30248292-30248311 | Msa1322830:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr8_4:30248293-30248312 | Msa1322830:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr8_4:30248318-30248337 | Msa1322830:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr8_4:30248457-30248476 | Msa1322830:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr8_4:30248523-30248542 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr8_4:30248563-30248582 | Msa1322830:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr8_4:30248596-30248615 | Msa1322830:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr8_4:30248650-30248669 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr8_4:30248889-30248908 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr8_4:30248893-30248912 | Msa1322830:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr8_4:30248917-30248936 | Msa1322830:intron | 30.0% |
| CTTACTTATTTGAACTACAC+GGG | + | chr8_4:30249031-30249050 | Msa1322830:intron | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | - | chr8_4:30249062-30249081 | None:intergenic | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | - | chr8_4:30249096-30249115 | None:intergenic | 30.0% | |
| ! | ATTTAGTTTACGCATTGTTG+AGG | + | chr8_4:30249218-30249237 | Msa1322830:intron | 30.0% |
| TAAATTTCAGCTGCCTTTAT+TGG | + | chr8_4:30249412-30249431 | Msa1322830:intron | 30.0% | |
| AAAACACCTGGAAAACTATT+CGG | - | chr8_4:30249601-30249620 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | chr8_4:30249649-30249668 | Msa1322830:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | - | chr8_4:30250097-30250116 | None:intergenic | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | - | chr8_4:30250098-30250117 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | - | chr8_4:30250099-30250118 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr8_4:30250139-30250158 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr8_4:30250137-30250156 | Msa1322830:CDS | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | + | chr8_4:30250226-30250245 | Msa1322830:CDS | 30.0% |
| ATCATGATCTTCAAAACTTG+GGG | - | chr8_4:30250299-30250318 | None:intergenic | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | chr8_4:30250300-30250319 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | + | chr8_4:30250311-30250330 | Msa1322830:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | chr8_4:30250479-30250498 | Msa1322830:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr8_4:30250799-30250818 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTCCGATTGATA+AGG | - | chr8_4:30250885-30250904 | None:intergenic | 30.0% |
| ACATCAACTTCATCTGATAG+TGG | + | chr8_4:30247993-30248012 | Msa1322830:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr8_4:30248120-30248139 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | - | chr8_4:30248359-30248378 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr8_4:30248376-30248395 | Msa1322830:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr8_4:30248381-30248400 | Msa1322830:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr8_4:30248382-30248401 | Msa1322830:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | chr8_4:30248415-30248434 | Msa1322830:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr8_4:30248494-30248513 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr8_4:30248533-30248552 | Msa1322830:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr8_4:30248595-30248614 | Msa1322830:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+GGG | + | chr8_4:30248602-30248621 | Msa1322830:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr8_4:30248682-30248701 | Msa1322830:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr8_4:30248685-30248704 | Msa1322830:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr8_4:30248753-30248772 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr8_4:30248754-30248773 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr8_4:30248806-30248825 | Msa1322830:CDS | 35.0% |
| TAAGACCTATAGTCAATCCT+AGG | - | chr8_4:30249015-30249034 | None:intergenic | 35.0% | |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | + | chr8_4:30249445-30249464 | Msa1322830:CDS | 35.0% |
| !!! | AGACAACAGCTACTTTTGAT+TGG | + | chr8_4:30249488-30249507 | Msa1322830:CDS | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | chr8_4:30249542-30249561 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | + | chr8_4:30249592-30249611 | Msa1322830:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | chr8_4:30249604-30249623 | Msa1322830:CDS | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr8_4:30249605-30249624 | Msa1322830:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr8_4:30249617-30249636 | Msa1322830:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr8_4:30249904-30249923 | Msa1322830:CDS | 35.0% |
| TAAAGAATCGAACAAGTGAG+TGG | - | chr8_4:30249945-30249964 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr8_4:30249974-30249993 | Msa1322830:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr8_4:30249975-30249994 | Msa1322830:CDS | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr8_4:30250100-30250119 | Msa1322830:intron | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | + | chr8_4:30250227-30250246 | Msa1322830:CDS | 35.0% |
| TCCAAAACATCAACATTCGA+AGG | - | chr8_4:30250253-30250272 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr8_4:30250301-30250320 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | chr8_4:30250375-30250394 | Msa1322830:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | chr8_4:30250408-30250427 | Msa1322830:CDS | 35.0% |
| TTGAAGATCTTGGAGTTCTT+AGG | + | chr8_4:30250418-30250437 | Msa1322830:CDS | 35.0% | |
| ! | CATTCTTTGAAGACAATACC+TGG | + | chr8_4:30250457-30250476 | Msa1322830:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | - | chr8_4:30250478-30250497 | None:intergenic | 35.0% |
| GATTTCATCTTATCGACAGA+CGG | - | chr8_4:30250520-30250539 | None:intergenic | 35.0% | |
| TGTTCTTGAAGCTGGAAAAA+AGG | + | chr8_4:30250666-30250685 | Msa1322830:CDS | 35.0% | |
| !! | CTTTCTAAAGGTATTCGTAC+AGG | + | chr8_4:30250703-30250722 | Msa1322830:CDS | 35.0% |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | - | chr8_4:30250736-30250755 | None:intergenic | 35.0% |
| TCTTTCTTTGAACTTTGGTG+CGG | - | chr8_4:30250794-30250813 | None:intergenic | 35.0% | |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | - | chr8_4:30250823-30250842 | None:intergenic | 35.0% |
| GGCAGAAATTCCTTATCAAT+CGG | + | chr8_4:30250872-30250891 | Msa1322830:CDS | 35.0% | |
| ! | TGAAGCTTTATCAGTGATTG+TGG | + | chr8_4:30250915-30250934 | Msa1322830:CDS | 35.0% |
| ! | GAAGCTTTATCAGTGATTGT+GGG | + | chr8_4:30250916-30250935 | Msa1322830:CDS | 35.0% |
| TCAGCATGAATCATTGCTAG+GGG | - | chr8_4:30248080-30248099 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | - | chr8_4:30248081-30248100 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | - | chr8_4:30248082-30248101 | None:intergenic | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr8_4:30248117-30248136 | Msa1322830:CDS | 40.0% | |
| GTCTTATGAAGTTATGGGTC+AGG | + | chr8_4:30248601-30248620 | Msa1322830:CDS | 40.0% | |
| ! | GCACAGAGAATCTTCCTTTT+CGG | + | chr8_4:30248633-30248652 | Msa1322830:CDS | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | + | chr8_4:30248995-30249014 | Msa1322830:intron | 40.0% |
| AACTGCCTAGGATTGACTAT+AGG | + | chr8_4:30249007-30249026 | Msa1322830:intron | 40.0% | |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | + | chr8_4:30249078-30249097 | Msa1322830:intron | 40.0% |
| TCACACAAGACAAAATGCCT+AGG | - | chr8_4:30249152-30249171 | None:intergenic | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | - | chr8_4:30249553-30249572 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | chr8_4:30249552-30249571 | Msa1322830:CDS | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | - | chr8_4:30249819-30249838 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | + | chr8_4:30249821-30249840 | Msa1322830:CDS | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr8_4:30249834-30249853 | Msa1322830:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | chr8_4:30249856-30249875 | Msa1322830:CDS | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr8_4:30250002-30250021 | Msa1322830:CDS | 40.0% |
| ! | AGGGGTGTACTTGTTTACAA+CGG | - | chr8_4:30250079-30250098 | None:intergenic | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | + | chr8_4:30250150-30250169 | Msa1322830:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr8_4:30250151-30250170 | Msa1322830:CDS | 40.0% | |
| ! | GCCTTCGAATGTTGATGTTT+TGG | + | chr8_4:30250249-30250268 | Msa1322830:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+AGG | + | chr8_4:30250374-30250393 | Msa1322830:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | chr8_4:30250376-30250395 | Msa1322830:CDS | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | + | chr8_4:30250421-30250440 | Msa1322830:CDS | 40.0% | |
| ATGAAATCGACCGTCAATGT+TGG | + | chr8_4:30250532-30250551 | Msa1322830:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAC+TGG | - | chr8_4:30250569-30250588 | None:intergenic | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | + | chr8_4:30250691-30250710 | Msa1322830:CDS | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | - | chr8_4:30250730-30250749 | None:intergenic | 40.0% | |
| TCTTCAAAAGTAGCTGCTGT+TGG | + | chr8_4:30250742-30250761 | Msa1322830:CDS | 40.0% | |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr8_4:30248038-30248057 | Msa1322830:CDS | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | - | chr8_4:30248332-30248351 | None:intergenic | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr8_4:30248386-30248405 | Msa1322830:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr8_4:30248395-30248414 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr8_4:30248398-30248417 | Msa1322830:CDS | 45.0% |
| CTAAGGTAACACGAATGCTC+TGG | - | chr8_4:30248506-30248525 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr8_4:30248689-30248708 | Msa1322830:CDS | 45.0% |
| AACACAATAACGCACTAGCC+TGG | - | chr8_4:30249573-30249592 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | chr8_4:30249613-30249632 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr8_4:30249833-30249852 | Msa1322830:CDS | 45.0% |
| AATCGAACAAGTGAGTGGTC+TGG | - | chr8_4:30249940-30249959 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr8_4:30249993-30250012 | Msa1322830:CDS | 45.0% | |
| GTCTTCAGTGCCAACATTGA+CGG | - | chr8_4:30250545-30250564 | None:intergenic | 45.0% | |
| TGAAGCTGGAAAAAAGGCAG+AGG | + | chr8_4:30250672-30250691 | Msa1322830:CDS | 45.0% | |
| TTGAAGACTTAGATGGCGTC+GGG | - | chr8_4:30250729-30250748 | None:intergenic | 45.0% | |
| ! | CTGTTGGTGAAACATCTGCT+GGG | + | chr8_4:30250758-30250777 | Msa1322830:CDS | 45.0% |
| ! | TGTTGGTGAAACATCTGCTG+GGG | + | chr8_4:30250759-30250778 | Msa1322830:CDS | 45.0% |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | - | chr8_4:30250790-30250809 | None:intergenic | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | - | chr8_4:30250791-30250810 | None:intergenic | 45.0% |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | - | chr8_4:30248344-30248363 | None:intergenic | 50.0% |
| GAAGTTATGGGTCAGGGAGT+TGG | + | chr8_4:30248608-30248627 | Msa1322830:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | chr8_4:30249624-30249643 | Msa1322830:CDS | 50.0% |
| GAAGGCCTACCTCAGACTTT+AGG | + | chr8_4:30249785-30249804 | Msa1322830:CDS | 50.0% | |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | - | chr8_4:30249793-30249812 | None:intergenic | 50.0% |
| GACAAGCCACCTAAAGTCTG+AGG | - | chr8_4:30249797-30249816 | None:intergenic | 50.0% | |
| ATCCCAACAGTCAGCTGATG+CGG | + | chr8_4:30250052-30250071 | Msa1322830:intron | 50.0% | |
| ! | GCTGTTGGTGAAACATCTGC+TGG | + | chr8_4:30250757-30250776 | Msa1322830:CDS | 50.0% |
| GCCAACAACAGACAGTCCAC+AGG | + | chr8_4:30248340-30248359 | Msa1322830:CDS | 55.0% | |
| GTTATGGGTCAGGGAGTTGG+AGG | + | chr8_4:30248611-30248630 | Msa1322830:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | + | chr8_4:30249788-30249807 | Msa1322830:CDS | 55.0% | |
| GACCGCATCAGCTGACTGTT+GGG | - | chr8_4:30250057-30250076 | None:intergenic | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | + | chr8_4:30250658-30250677 | Msa1322830:CDS | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | - | chr8_4:30250058-30250077 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 30247984 | 30250945 | 30247984 | ID=Msa1322830;Name=Msa1322830 |
| chr8_4 | mRNA | 30247984 | 30250945 | 30247984 | ID=Msa1322830-mRNA-1;Parent=Msa1322830;Name=Msa1322830-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0|1|1|1|3|0|797 |
| chr8_4 | exon | 30247984 | 30248914 | 30247984 | ID=Msa1322830-mRNA-1:exon:10058;Parent=Msa1322830-mRNA-1 |
| chr8_4 | exon | 30249422 | 30250060 | 30249422 | ID=Msa1322830-mRNA-1:exon:10059;Parent=Msa1322830-mRNA-1 |
| chr8_4 | exon | 30250122 | 30250945 | 30250122 | ID=Msa1322830-mRNA-1:exon:10060;Parent=Msa1322830-mRNA-1 |
| chr8_4 | CDS | 30247984 | 30248914 | 30247984 | ID=Msa1322830-mRNA-1:cds;Parent=Msa1322830-mRNA-1 |
| chr8_4 | CDS | 30249422 | 30250060 | 30249422 | ID=Msa1322830-mRNA-1:cds;Parent=Msa1322830-mRNA-1 |
| chr8_4 | CDS | 30250122 | 30250945 | 30250122 | ID=Msa1322830-mRNA-1:cds;Parent=Msa1322830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
