Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323240 | XP_039688775.1 | 66.337 | 202 | 43 | 2 | 42 | 218 | 1 | 202 | 4.25e-85 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323240 | sp|Q9SWG3|FAR1_ARATH | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.35e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323240 | A0A2K3NBU0 | 65.816 | 196 | 45 | 1 | 45 | 218 | 3 | 198 | 3.42e-79 | 260 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1323240 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323240 | MtrunA17_Chr1g0207551 | 36.364 | 165 | 81 | 2 | 78 | 218 | 33 | 197 | 4.35e-26 | 105 |
| Msa1323240 | MtrunA17_Chr2g0329031 | 33.523 | 176 | 86 | 4 | 67 | 218 | 2 | 170 | 7.23e-22 | 93.2 |
| Msa1323240 | MtrunA17_Chr5g0448761 | 30.233 | 172 | 89 | 4 | 78 | 218 | 59 | 230 | 3.39e-18 | 82.8 |
| Msa1323240 | MtrunA17_Chr3g0080351 | 28.333 | 180 | 67 | 4 | 78 | 218 | 75 | 231 | 3.61e-17 | 79.7 |
| Msa1323240 | MtrunA17_Chr6g0451441 | 28.500 | 200 | 121 | 5 | 40 | 218 | 49 | 247 | 3.58e-14 | 70.9 |
| Msa1323240 | MtrunA17_Chr2g0287651 | 24.468 | 188 | 112 | 4 | 58 | 215 | 53 | 240 | 1.04e-13 | 69.7 |
| Msa1323240 | MtrunA17_Chr7g0258861 | 26.220 | 164 | 94 | 3 | 78 | 214 | 9 | 172 | 1.98e-12 | 65.1 |
| Msa1323240 | MtrunA17_Chr5g0440451 | 28.571 | 133 | 76 | 3 | 39 | 154 | 1 | 131 | 7.19e-12 | 64.3 |
| Msa1323240 | MtrunA17_Chr7g0233911 | 33.793 | 145 | 62 | 6 | 49 | 162 | 2 | 143 | 1.97e-11 | 61.2 |
| Msa1323240 | MtrunA17_Chr2g0324011 | 26.627 | 169 | 94 | 5 | 78 | 218 | 9 | 175 | 2.43e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323240 | AT4G15090.1 | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.49e-29 | 114 |
| Msa1323240 | AT4G15090.5 | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.49e-29 | 114 |
| Msa1323240 | AT4G15090.3 | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.49e-29 | 114 |
| Msa1323240 | AT4G15090.2 | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.49e-29 | 114 |
| Msa1323240 | AT4G15090.4 | 35.023 | 217 | 104 | 6 | 39 | 218 | 1 | 217 | 8.49e-29 | 114 |
| Msa1323240 | AT4G38180.1 | 31.148 | 183 | 94 | 4 | 66 | 218 | 62 | 242 | 2.16e-21 | 92.4 |
| Msa1323240 | AT3G22170.2 | 27.273 | 242 | 101 | 7 | 30 | 218 | 7 | 226 | 1.13e-19 | 87.4 |
| Msa1323240 | AT3G22170.1 | 27.273 | 242 | 101 | 7 | 30 | 218 | 7 | 226 | 1.13e-19 | 87.4 |
| Msa1323240 | AT1G76320.2 | 31.875 | 160 | 79 | 4 | 83 | 218 | 1 | 154 | 1.16e-16 | 78.6 |
| Msa1323240 | AT1G76320.1 | 31.875 | 160 | 79 | 4 | 83 | 218 | 1 | 154 | 1.21e-16 | 78.6 |
| Msa1323240 | AT1G76320.4 | 31.875 | 160 | 79 | 4 | 83 | 218 | 1 | 154 | 1.21e-16 | 78.6 |
| Msa1323240 | AT1G76320.3 | 31.875 | 160 | 79 | 4 | 83 | 218 | 1 | 154 | 1.70e-16 | 78.2 |
| Msa1323240 | AT2G32250.5 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.23e-14 | 70.5 |
| Msa1323240 | AT2G32250.2 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.61e-14 | 70.5 |
| Msa1323240 | AT2G32250.4 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.61e-14 | 70.5 |
| Msa1323240 | AT2G32250.6 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.80e-14 | 70.5 |
| Msa1323240 | AT2G32250.1 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.80e-14 | 70.5 |
| Msa1323240 | AT2G32250.3 | 37.500 | 112 | 45 | 3 | 82 | 170 | 41 | 150 | 6.80e-14 | 70.5 |
| Msa1323240 | AT2G32250.8 | 36.937 | 111 | 45 | 3 | 83 | 170 | 1 | 109 | 5.13e-13 | 67.8 |
| Msa1323240 | AT2G32250.7 | 36.937 | 111 | 45 | 3 | 83 | 170 | 1 | 109 | 5.23e-13 | 67.8 |
Find 38 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAAATATAGGAATTAA+TGG | 0.248279 | 8_4:-31442452 | Msa1323240:intron |
| CACTCTGCTATCATTCTTAA+AGG | 0.277937 | 8_4:-31442720 | Msa1323240:CDS |
| TTCATATCCTCCATATTGTT+TGG | 0.293868 | 8_4:+31441904 | None:intergenic |
| AAATCTGCGTCGTTGTTTAA+AGG | 0.297168 | 8_4:-31442134 | Msa1323240:CDS |
| GCCACTCTGGCCAAACAATA+TGG | 0.314518 | 8_4:-31441914 | Msa1323240:CDS |
| TCAAATTTCATTCCAATGTA+TGG | 0.346422 | 8_4:+31442322 | None:intergenic |
| GAGTAAAGTGTAATGAAAAT+TGG | 0.367197 | 8_4:-31442822 | None:intergenic |
| ATCAGAAATCATTTAGATAT+AGG | 0.417224 | 8_4:-31441857 | Msa1323240:CDS |
| CATTATTTCCTTTGCCATAG+AGG | 0.426978 | 8_4:-31442007 | Msa1323240:CDS |
| GAATTAATGGAAGTTGTTGA+TGG | 0.448629 | 8_4:-31442439 | Msa1323240:CDS |
| AATGATGACAATGTTATTGA+TGG | 0.455364 | 8_4:-31442415 | Msa1323240:CDS |
| AGGAAATAATGTGCATATGC+TGG | 0.467902 | 8_4:+31442019 | None:intergenic |
| AGCGTGTGTTGAAGGGAGTT+TGG | 0.475218 | 8_4:+31442782 | None:intergenic |
| TGCTATCATTCTTAAAGGTA+TGG | 0.477048 | 8_4:-31442715 | Msa1323240:intron |
| TGTGTGTGAGCGTGTGTTGA+AGG | 0.481794 | 8_4:+31442774 | None:intergenic |
| ACTTATGCTCGCACAAGATA+CGG | 0.484780 | 8_4:-31442181 | Msa1323240:CDS |
| AGAATGATTCATGTACGGTT+GGG | 0.505397 | 8_4:-31442360 | Msa1323240:CDS |
| GTGTGTGAGCGTGTGTTGAA+GGG | 0.519552 | 8_4:+31442775 | None:intergenic |
| TATTGATTCCTCTATGGCAA+AGG | 0.524300 | 8_4:+31441999 | None:intergenic |
| ACTACTGTAACATAAATCTT+CGG | 0.535461 | 8_4:+31442744 | None:intergenic |
| CTTATGCTCGCACAAGATAC+GGG | 0.542745 | 8_4:-31442180 | Msa1323240:CDS |
| AATTAATGGAAGTTGTTGAT+GGG | 0.547188 | 8_4:-31442438 | Msa1323240:CDS |
| ATTGAAACTATGCAAGATGT+TGG | 0.548761 | 8_4:-31441959 | Msa1323240:CDS |
| TCCATATTGTTTGGCCAGAG+TGG | 0.548986 | 8_4:+31441913 | None:intergenic |
| GAGAATGATTCATGTACGGT+TGG | 0.560679 | 8_4:-31442361 | Msa1323240:CDS |
| CTAATGAAAGAGCCATACAT+TGG | 0.562140 | 8_4:-31442334 | Msa1323240:CDS |
| AAGCAAAATTTATGCCACTC+TGG | 0.565072 | 8_4:-31441927 | Msa1323240:CDS |
| TCTGCGTCGTTGTTTAAAGG+TGG | 0.568390 | 8_4:-31442131 | Msa1323240:CDS |
| TTGTTTAAAGGTGGAATGTG+AGG | 0.581351 | 8_4:-31442122 | Msa1323240:CDS |
| TATGGAGGATATGAAAACAT+TGG | 0.602190 | 8_4:-31441896 | Msa1323240:CDS |
| TGTTGAGAATGATTCATGTA+CGG | 0.602674 | 8_4:-31442365 | Msa1323240:CDS |
| ATGATTCATGTACGGTTGGG+AGG | 0.609038 | 8_4:-31442357 | Msa1323240:CDS |
| GAAATCATTTAGATATAGGT+CGG | 0.612130 | 8_4:-31441853 | Msa1323240:CDS |
| GCACAAGATACGGGAAGACG+CGG | 0.628660 | 8_4:-31442171 | Msa1323240:CDS |
| ATGATGACAATGTTATTGAT+GGG | 0.630031 | 8_4:-31442414 | Msa1323240:CDS |
| ACTGTAACATAAATCTTCGG+TGG | 0.635445 | 8_4:+31442747 | None:intergenic |
| CACAAGATACGGGAAGACGC+GGG | 0.645645 | 8_4:-31442170 | Msa1323240:CDS |
| ACTCTGGCCAAACAATATGG+AGG | 0.695583 | 8_4:-31441911 | Msa1323240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTAAATATTACTATAAAA+TGG | - | chr8_4:31441962-31441981 | Msa1323240:CDS | 15.0% |
| !!! | CTTATTTTTTTAGAAAAAGT+TGG | + | chr8_4:31442106-31442125 | None:intergenic | 15.0% |
| !!! | GTTTTAATCTTTATTTTACT+CGG | - | chr8_4:31442125-31442144 | Msa1323240:CDS | 15.0% |
| !!! | ACAGTTATAATTTGAAATAT+AGG | - | chr8_4:31442196-31442215 | Msa1323240:intron | 15.0% |
| !!! | ATTTGAAATATAGGAATTAA+TGG | - | chr8_4:31442205-31442224 | Msa1323240:intron | 15.0% |
| !! | TGGTAAATATTACTATAAAA+TGG | - | chr8_4:31441962-31441981 | Msa1323240:CDS | 15.0% |
| !!! | CTTATTTTTTTAGAAAAAGT+TGG | + | chr8_4:31442106-31442125 | None:intergenic | 15.0% |
| !!! | GTTTTAATCTTTATTTTACT+CGG | - | chr8_4:31442125-31442144 | Msa1323240:CDS | 15.0% |
| !!! | ACAGTTATAATTTGAAATAT+AGG | - | chr8_4:31442196-31442215 | Msa1323240:intron | 15.0% |
| !!! | ATTTGAAATATAGGAATTAA+TGG | - | chr8_4:31442205-31442224 | Msa1323240:intron | 15.0% |
| !! | TAAAATGGAATAGAATTTGA+TGG | - | chr8_4:31441977-31441996 | Msa1323240:CDS | 20.0% |
| !! | TAATATAAGCACTATATATG+TGG | - | chr8_4:31442019-31442038 | Msa1323240:CDS | 20.0% |
| !! | CGTATTAAAAAAAATTGTGA+TGG | - | chr8_4:31442566-31442585 | Msa1323240:intron | 20.0% |
| !!! | AAAAAAATTGTGATGGAAAA+TGG | - | chr8_4:31442573-31442592 | Msa1323240:intron | 20.0% |
| !! | ATCAGAAATCATTTAGATAT+AGG | - | chr8_4:31442800-31442819 | Msa1323240:CDS | 20.0% |
| !! | TAAAATGGAATAGAATTTGA+TGG | - | chr8_4:31441977-31441996 | Msa1323240:CDS | 20.0% |
| !! | TAATATAAGCACTATATATG+TGG | - | chr8_4:31442019-31442038 | Msa1323240:CDS | 20.0% |
| !! | CGTATTAAAAAAAATTGTGA+TGG | - | chr8_4:31442566-31442585 | Msa1323240:intron | 20.0% |
| !!! | AAAAAAATTGTGATGGAAAA+TGG | - | chr8_4:31442573-31442592 | Msa1323240:intron | 20.0% |
| !! | ATCAGAAATCATTTAGATAT+AGG | - | chr8_4:31442800-31442819 | Msa1323240:CDS | 20.0% |
| ! | ACTACTGTAACATAAATCTT+CGG | + | chr8_4:31441916-31441935 | None:intergenic | 25.0% |
| ! | AATTAATGGAAGTTGTTGAT+GGG | - | chr8_4:31442219-31442238 | Msa1323240:intron | 25.0% |
| ! | AATGATGACAATGTTATTGA+TGG | - | chr8_4:31442242-31442261 | Msa1323240:intron | 25.0% |
| ! | ATGATGACAATGTTATTGAT+GGG | - | chr8_4:31442243-31442262 | Msa1323240:intron | 25.0% |
| ! | TCAAATTTCATTCCAATGTA+TGG | + | chr8_4:31442338-31442357 | None:intergenic | 25.0% |
| ! | GAAATCATTTAGATATAGGT+CGG | - | chr8_4:31442804-31442823 | Msa1323240:CDS | 25.0% |
| ! | ACTACTGTAACATAAATCTT+CGG | + | chr8_4:31441916-31441935 | None:intergenic | 25.0% |
| ! | AATTAATGGAAGTTGTTGAT+GGG | - | chr8_4:31442219-31442238 | Msa1323240:intron | 25.0% |
| ! | AATGATGACAATGTTATTGA+TGG | - | chr8_4:31442242-31442261 | Msa1323240:intron | 25.0% |
| ! | ATGATGACAATGTTATTGAT+GGG | - | chr8_4:31442243-31442262 | Msa1323240:intron | 25.0% |
| ! | TCAAATTTCATTCCAATGTA+TGG | + | chr8_4:31442338-31442357 | None:intergenic | 25.0% |
| ! | GAAATCATTTAGATATAGGT+CGG | - | chr8_4:31442804-31442823 | Msa1323240:CDS | 25.0% |
| TGCTATCATTCTTAAAGGTA+TGG | - | chr8_4:31441942-31441961 | Msa1323240:CDS | 30.0% | |
| GAATTAATGGAAGTTGTTGA+TGG | - | chr8_4:31442218-31442237 | Msa1323240:intron | 30.0% | |
| TGTTGAGAATGATTCATGTA+CGG | - | chr8_4:31442292-31442311 | Msa1323240:CDS | 30.0% | |
| TAAAATTAGTCGTCGTTCAA+AGG | - | chr8_4:31442422-31442441 | Msa1323240:CDS | 30.0% | |
| !!! | GAGTTTTATTGATTCCTCTA+TGG | + | chr8_4:31442667-31442686 | None:intergenic | 30.0% |
| ATTGAAACTATGCAAGATGT+TGG | - | chr8_4:31442698-31442717 | Msa1323240:intron | 30.0% | |
| TTCATATCCTCCATATTGTT+TGG | + | chr8_4:31442756-31442775 | None:intergenic | 30.0% | |
| TATGGAGGATATGAAAACAT+TGG | - | chr8_4:31442761-31442780 | Msa1323240:CDS | 30.0% | |
| TGCTATCATTCTTAAAGGTA+TGG | - | chr8_4:31441942-31441961 | Msa1323240:CDS | 30.0% | |
| GAATTAATGGAAGTTGTTGA+TGG | - | chr8_4:31442218-31442237 | Msa1323240:intron | 30.0% | |
| TGTTGAGAATGATTCATGTA+CGG | - | chr8_4:31442292-31442311 | Msa1323240:CDS | 30.0% | |
| TAAAATTAGTCGTCGTTCAA+AGG | - | chr8_4:31442422-31442441 | Msa1323240:CDS | 30.0% | |
| !!! | GAGTTTTATTGATTCCTCTA+TGG | + | chr8_4:31442667-31442686 | None:intergenic | 30.0% |
| ATTGAAACTATGCAAGATGT+TGG | - | chr8_4:31442698-31442717 | Msa1323240:intron | 30.0% | |
| TTCATATCCTCCATATTGTT+TGG | + | chr8_4:31442756-31442775 | None:intergenic | 30.0% | |
| TATGGAGGATATGAAAACAT+TGG | - | chr8_4:31442761-31442780 | Msa1323240:CDS | 30.0% | |
| ACTGTAACATAAATCTTCGG+TGG | + | chr8_4:31441913-31441932 | None:intergenic | 35.0% | |
| CACTCTGCTATCATTCTTAA+AGG | - | chr8_4:31441937-31441956 | Msa1323240:CDS | 35.0% | |
| AGAATGATTCATGTACGGTT+GGG | - | chr8_4:31442297-31442316 | Msa1323240:CDS | 35.0% | |
| CTAATGAAAGAGCCATACAT+TGG | - | chr8_4:31442323-31442342 | Msa1323240:CDS | 35.0% | |
| AAATCTGCGTCGTTGTTTAA+AGG | - | chr8_4:31442523-31442542 | Msa1323240:intron | 35.0% | |
| TTGTTTAAAGGTGGAATGTG+AGG | - | chr8_4:31442535-31442554 | Msa1323240:intron | 35.0% | |
| CTGGAAAAAGCTCATGATTA+TGG | + | chr8_4:31442622-31442641 | None:intergenic | 35.0% | |
| AGGAAATAATGTGCATATGC+TGG | + | chr8_4:31442641-31442660 | None:intergenic | 35.0% | |
| CATTATTTCCTTTGCCATAG+AGG | - | chr8_4:31442650-31442669 | Msa1323240:intron | 35.0% | |
| !! | TATTGATTCCTCTATGGCAA+AGG | + | chr8_4:31442661-31442680 | None:intergenic | 35.0% |
| AAGCAAAATTTATGCCACTC+TGG | - | chr8_4:31442730-31442749 | Msa1323240:CDS | 35.0% | |
| ACTGTAACATAAATCTTCGG+TGG | + | chr8_4:31441913-31441932 | None:intergenic | 35.0% | |
| CACTCTGCTATCATTCTTAA+AGG | - | chr8_4:31441937-31441956 | Msa1323240:CDS | 35.0% | |
| AGAATGATTCATGTACGGTT+GGG | - | chr8_4:31442297-31442316 | Msa1323240:CDS | 35.0% | |
| CTAATGAAAGAGCCATACAT+TGG | - | chr8_4:31442323-31442342 | Msa1323240:CDS | 35.0% | |
| AAATCTGCGTCGTTGTTTAA+AGG | - | chr8_4:31442523-31442542 | Msa1323240:intron | 35.0% | |
| TTGTTTAAAGGTGGAATGTG+AGG | - | chr8_4:31442535-31442554 | Msa1323240:intron | 35.0% | |
| CTGGAAAAAGCTCATGATTA+TGG | + | chr8_4:31442622-31442641 | None:intergenic | 35.0% | |
| AGGAAATAATGTGCATATGC+TGG | + | chr8_4:31442641-31442660 | None:intergenic | 35.0% | |
| CATTATTTCCTTTGCCATAG+AGG | - | chr8_4:31442650-31442669 | Msa1323240:intron | 35.0% | |
| !! | TATTGATTCCTCTATGGCAA+AGG | + | chr8_4:31442661-31442680 | None:intergenic | 35.0% |
| AAGCAAAATTTATGCCACTC+TGG | - | chr8_4:31442730-31442749 | Msa1323240:CDS | 35.0% | |
| GAGAATGATTCATGTACGGT+TGG | - | chr8_4:31442296-31442315 | Msa1323240:CDS | 40.0% | |
| ATTACGCTGTCTGTTGGATT+TGG | - | chr8_4:31442390-31442409 | Msa1323240:CDS | 40.0% | |
| TTACGCTGTCTGTTGGATTT+GGG | - | chr8_4:31442391-31442410 | Msa1323240:CDS | 40.0% | |
| ACTTATGCTCGCACAAGATA+CGG | - | chr8_4:31442476-31442495 | Msa1323240:intron | 40.0% | |
| GAGAATGATTCATGTACGGT+TGG | - | chr8_4:31442296-31442315 | Msa1323240:CDS | 40.0% | |
| ATTACGCTGTCTGTTGGATT+TGG | - | chr8_4:31442390-31442409 | Msa1323240:CDS | 40.0% | |
| TTACGCTGTCTGTTGGATTT+GGG | - | chr8_4:31442391-31442410 | Msa1323240:CDS | 40.0% | |
| ACTTATGCTCGCACAAGATA+CGG | - | chr8_4:31442476-31442495 | Msa1323240:intron | 40.0% | |
| ATGATTCATGTACGGTTGGG+AGG | - | chr8_4:31442300-31442319 | Msa1323240:CDS | 45.0% | |
| ACACTCATTACGCTGTCTGT+TGG | - | chr8_4:31442384-31442403 | Msa1323240:CDS | 45.0% | |
| CTTATGCTCGCACAAGATAC+GGG | - | chr8_4:31442477-31442496 | Msa1323240:intron | 45.0% | |
| TCTGCGTCGTTGTTTAAAGG+TGG | - | chr8_4:31442526-31442545 | Msa1323240:intron | 45.0% | |
| TCCATATTGTTTGGCCAGAG+TGG | + | chr8_4:31442747-31442766 | None:intergenic | 45.0% | |
| ACTCTGGCCAAACAATATGG+AGG | - | chr8_4:31442746-31442765 | Msa1323240:CDS | 45.0% | |
| ATGATTCATGTACGGTTGGG+AGG | - | chr8_4:31442300-31442319 | Msa1323240:CDS | 45.0% | |
| ACACTCATTACGCTGTCTGT+TGG | - | chr8_4:31442384-31442403 | Msa1323240:CDS | 45.0% | |
| CTTATGCTCGCACAAGATAC+GGG | - | chr8_4:31442477-31442496 | Msa1323240:intron | 45.0% | |
| TCTGCGTCGTTGTTTAAAGG+TGG | - | chr8_4:31442526-31442545 | Msa1323240:intron | 45.0% | |
| TCCATATTGTTTGGCCAGAG+TGG | + | chr8_4:31442747-31442766 | None:intergenic | 45.0% | |
| ACTCTGGCCAAACAATATGG+AGG | - | chr8_4:31442746-31442765 | Msa1323240:CDS | 45.0% | |
| AGCGTGTGTTGAAGGGAGTT+TGG | + | chr8_4:31441878-31441897 | None:intergenic | 50.0% | |
| GTGTGTGAGCGTGTGTTGAA+GGG | + | chr8_4:31441885-31441904 | None:intergenic | 50.0% | |
| TGTGTGTGAGCGTGTGTTGA+AGG | + | chr8_4:31441886-31441905 | None:intergenic | 50.0% | |
| ! | ACGACGCAGATTTTGTGCAG+TGG | + | chr8_4:31442516-31442535 | None:intergenic | 50.0% |
| GCCACTCTGGCCAAACAATA+TGG | - | chr8_4:31442743-31442762 | Msa1323240:CDS | 50.0% | |
| AGCGTGTGTTGAAGGGAGTT+TGG | + | chr8_4:31441878-31441897 | None:intergenic | 50.0% | |
| GTGTGTGAGCGTGTGTTGAA+GGG | + | chr8_4:31441885-31441904 | None:intergenic | 50.0% | |
| TGTGTGTGAGCGTGTGTTGA+AGG | + | chr8_4:31441886-31441905 | None:intergenic | 50.0% | |
| ! | ACGACGCAGATTTTGTGCAG+TGG | + | chr8_4:31442516-31442535 | None:intergenic | 50.0% |
| GCCACTCTGGCCAAACAATA+TGG | - | chr8_4:31442743-31442762 | Msa1323240:CDS | 50.0% | |
| GCACAAGATACGGGAAGACG+CGG | - | chr8_4:31442486-31442505 | Msa1323240:intron | 55.0% | |
| CACAAGATACGGGAAGACGC+GGG | - | chr8_4:31442487-31442506 | Msa1323240:intron | 55.0% | |
| GCACAAGATACGGGAAGACG+CGG | - | chr8_4:31442486-31442505 | Msa1323240:intron | 55.0% | |
| CACAAGATACGGGAAGACGC+GGG | - | chr8_4:31442487-31442506 | Msa1323240:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 31441847 | 31442832 | 31441847 | ID=Msa1323240;Name=Msa1323240 |
| chr8_4 | mRNA | 31441847 | 31442832 | 31441847 | ID=Msa1323240-mRNA-1;Parent=Msa1323240;Name=Msa1323240-mRNA-1;_AED=0.31;_eAED=0.32;_QI=0|0|0|0.66|0|0.33|3|0|219 |
| chr8_4 | exon | 31442716 | 31442832 | 31442716 | ID=Msa1323240-mRNA-1:exon:10240;Parent=Msa1323240-mRNA-1 |
| chr8_4 | exon | 31442282 | 31442461 | 31442282 | ID=Msa1323240-mRNA-1:exon:10239;Parent=Msa1323240-mRNA-1 |
| chr8_4 | exon | 31441847 | 31442209 | 31441847 | ID=Msa1323240-mRNA-1:exon:10238;Parent=Msa1323240-mRNA-1 |
| chr8_4 | CDS | 31442716 | 31442832 | 31442716 | ID=Msa1323240-mRNA-1:cds;Parent=Msa1323240-mRNA-1 |
| chr8_4 | CDS | 31442282 | 31442461 | 31442282 | ID=Msa1323240-mRNA-1:cds;Parent=Msa1323240-mRNA-1 |
| chr8_4 | CDS | 31441847 | 31442209 | 31441847 | ID=Msa1323240-mRNA-1:cds;Parent=Msa1323240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
