Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1323420 | sp|O64703|AGL29_ARATH | 36.585 | 164 | 91 | 2 | 1 | 151 | 8 | 171 | 2.50e-28 | 106 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1323420 | G7L974 | 93.082 | 159 | 8 | 1 | 1 | 159 | 8 | 163 | 7.31e-102 | 299 |
Gene ID | Type | Classification |
---|---|---|
Msa1323420 | TF | MADS-M-type |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1323420 | MtrunA17_Chr8g0356071 | 93.082 | 159 | 8 | 1 | 1 | 159 | 8 | 163 | 1.41e-105 | 299 |
Msa1323420 | MtrunA17_Chr8g0357771 | 61.176 | 170 | 63 | 1 | 1 | 167 | 8 | 177 | 2.81e-70 | 210 |
Msa1323420 | MtrunA17_Chr1g0169761 | 54.167 | 168 | 74 | 1 | 1 | 165 | 8 | 175 | 3.74e-60 | 184 |
Msa1323420 | MtrunA17_Chr4g0074101 | 50.267 | 187 | 73 | 1 | 1 | 167 | 8 | 194 | 8.49e-60 | 184 |
Msa1323420 | MtrunA17_Chr8g0376821 | 55.000 | 160 | 69 | 1 | 1 | 157 | 8 | 167 | 3.83e-57 | 177 |
Msa1323420 | MtrunA17_Chr1g0180591 | 51.515 | 165 | 77 | 1 | 4 | 165 | 11 | 175 | 1.02e-54 | 171 |
Msa1323420 | MtrunA17_Chr1g0175601 | 51.807 | 166 | 76 | 2 | 4 | 165 | 11 | 176 | 1.79e-52 | 165 |
Msa1323420 | MtrunA17_Chr1g0175611 | 50.633 | 158 | 75 | 1 | 4 | 158 | 11 | 168 | 1.91e-51 | 162 |
Msa1323420 | MtrunA17_Chr4g0052061 | 33.962 | 159 | 86 | 5 | 1 | 154 | 8 | 152 | 1.08e-23 | 91.3 |
Msa1323420 | MtrunA17_Chr3g0119901 | 47.059 | 102 | 46 | 3 | 11 | 107 | 25 | 123 | 1.55e-22 | 89.4 |
Msa1323420 | MtrunA17_Chr3g0099411 | 38.168 | 131 | 60 | 3 | 11 | 134 | 25 | 141 | 6.13e-22 | 88.2 |
Msa1323420 | MtrunA17_Chr1g0206721 | 44.898 | 98 | 47 | 2 | 11 | 101 | 25 | 122 | 1.20e-21 | 87.8 |
Msa1323420 | MtrunA17_Chr3g0085241 | 45.192 | 104 | 52 | 2 | 11 | 109 | 57 | 160 | 2.44e-21 | 87.0 |
Msa1323420 | MtrunA17_Chr4g0018951 | 36.364 | 132 | 68 | 3 | 10 | 128 | 27 | 155 | 3.79e-21 | 84.7 |
Msa1323420 | MtrunA17_Chr1g0206991 | 42.857 | 98 | 49 | 2 | 11 | 101 | 25 | 122 | 3.84e-21 | 85.1 |
Msa1323420 | MtrunA17_Chr1g0206701 | 42.574 | 101 | 51 | 2 | 11 | 104 | 25 | 125 | 4.60e-20 | 83.6 |
Msa1323420 | MtrunA17_Chr3g0099421 | 49.383 | 81 | 36 | 2 | 11 | 86 | 50 | 130 | 4.84e-20 | 84.0 |
Msa1323420 | MtrunA17_Chr5g0422941 | 57.377 | 61 | 26 | 0 | 11 | 71 | 25 | 85 | 9.09e-20 | 82.8 |
Msa1323420 | MtrunA17_Chr5g0419601 | 55.738 | 61 | 27 | 0 | 11 | 71 | 25 | 85 | 1.10e-19 | 82.4 |
Msa1323420 | MtrunA17_Chr1g0206691 | 39.823 | 113 | 59 | 2 | 11 | 118 | 8 | 116 | 1.12e-19 | 82.0 |
Msa1323420 | MtrunA17_Chr2g0292791 | 42.574 | 101 | 51 | 2 | 11 | 104 | 25 | 125 | 2.06e-19 | 81.6 |
Msa1323420 | MtrunA17_Chr2g0300441 | 35.507 | 138 | 74 | 2 | 11 | 133 | 25 | 162 | 2.65e-19 | 81.6 |
Msa1323420 | MtrunA17_Chr1g0188671 | 59.016 | 61 | 25 | 0 | 11 | 71 | 63 | 123 | 2.79e-19 | 82.0 |
Msa1323420 | MtrunA17_Chr8g0355091 | 46.914 | 81 | 38 | 1 | 11 | 86 | 25 | 105 | 3.09e-19 | 81.3 |
Msa1323420 | MtrunA17_Chr2g0333981 | 35.484 | 124 | 74 | 3 | 4 | 126 | 21 | 139 | 3.66e-19 | 79.7 |
Msa1323420 | MtrunA17_Chr3g0089141 | 40.000 | 105 | 58 | 1 | 11 | 110 | 25 | 129 | 4.52e-19 | 80.9 |
Msa1323420 | MtrunA17_Chr1g0149391 | 41.121 | 107 | 51 | 2 | 11 | 105 | 25 | 131 | 5.22e-19 | 80.9 |
Msa1323420 | MtrunA17_Chr1g0208581 | 36.641 | 131 | 57 | 3 | 11 | 115 | 25 | 155 | 6.25e-19 | 80.5 |
Msa1323420 | MtrunA17_Chr1g0208561 | 43.158 | 95 | 48 | 2 | 11 | 100 | 25 | 118 | 7.32e-19 | 80.1 |
Msa1323420 | MtrunA17_Chr1g0187361 | 57.377 | 61 | 26 | 0 | 11 | 71 | 25 | 85 | 8.26e-19 | 80.1 |
Msa1323420 | MtrunA17_Chr2g0325971 | 35.878 | 131 | 58 | 1 | 11 | 115 | 25 | 155 | 1.44e-18 | 79.3 |
Msa1323420 | MtrunA17_Chr3g0089151 | 54.098 | 61 | 28 | 0 | 11 | 71 | 25 | 85 | 6.72e-18 | 75.5 |
Msa1323420 | MtrunA17_Chr2g0317451 | 54.098 | 61 | 28 | 0 | 11 | 71 | 25 | 85 | 1.69e-17 | 76.6 |
Msa1323420 | MtrunA17_Chr7g0238991 | 53.968 | 63 | 29 | 0 | 9 | 71 | 35 | 97 | 1.75e-17 | 77.0 |
Msa1323420 | MtrunA17_Chr2g0300421 | 41.053 | 95 | 50 | 2 | 11 | 100 | 25 | 118 | 1.81e-17 | 75.5 |
Msa1323420 | MtrunA17_Chr2g0317481 | 54.098 | 61 | 28 | 0 | 11 | 71 | 25 | 85 | 1.84e-17 | 76.6 |
Msa1323420 | MtrunA17_Chr5g0422421 | 54.098 | 61 | 28 | 0 | 11 | 71 | 25 | 85 | 2.11e-17 | 76.6 |
Msa1323420 | MtrunA17_Chr1g0187351 | 56.364 | 55 | 24 | 0 | 11 | 65 | 8 | 62 | 2.86e-17 | 72.0 |
Msa1323420 | MtrunA17_Chr8g0379021 | 34.375 | 128 | 76 | 4 | 4 | 129 | 21 | 142 | 3.82e-17 | 74.7 |
Msa1323420 | MtrunA17_Chr4g0052081 | 44.928 | 69 | 38 | 0 | 1 | 69 | 8 | 76 | 5.65e-17 | 74.3 |
Msa1323420 | MtrunA17_Chr3g0111841 | 55.556 | 54 | 22 | 1 | 11 | 62 | 12 | 65 | 1.11e-15 | 67.8 |
Msa1323420 | MtrunA17_Chr4g0071601 | 45.161 | 62 | 34 | 0 | 10 | 71 | 27 | 88 | 1.99e-15 | 70.1 |
Msa1323420 | MtrunA17_Chr3g0111931 | 47.541 | 61 | 32 | 0 | 11 | 71 | 6 | 66 | 8.85e-15 | 66.6 |
Msa1323420 | MtrunA17_Chr8g0351041 | 35.417 | 96 | 59 | 2 | 1 | 94 | 8 | 102 | 6.76e-14 | 65.9 |
Msa1323420 | MtrunA17_Chr8g0351031 | 35.417 | 96 | 59 | 2 | 1 | 94 | 8 | 102 | 3.49e-13 | 65.1 |
Msa1323420 | MtrunA17_Chr5g0427401 | 49.123 | 57 | 29 | 0 | 9 | 65 | 16 | 72 | 4.70e-13 | 64.7 |
Msa1323420 | MtrunA17_Chr7g0246431 | 30.851 | 94 | 65 | 0 | 1 | 94 | 8 | 101 | 2.31e-12 | 62.4 |
Msa1323420 | MtrunA17_Chr8g0345001 | 34.951 | 103 | 56 | 2 | 13 | 115 | 36 | 127 | 3.58e-12 | 61.6 |
Msa1323420 | MtrunA17_Chr5g0404951 | 26.277 | 137 | 67 | 2 | 1 | 137 | 8 | 110 | 4.28e-12 | 62.0 |
Msa1323420 | MtrunA17_Chr4g0057151 | 41.935 | 62 | 36 | 0 | 1 | 62 | 8 | 69 | 4.86e-12 | 61.6 |
Msa1323420 | MtrunA17_Chr5g0411691 | 48.148 | 54 | 28 | 0 | 9 | 62 | 16 | 69 | 1.11e-11 | 60.8 |
Msa1323420 | MtrunA17_Chr3g0111831 | 50.000 | 48 | 24 | 0 | 11 | 58 | 20 | 67 | 1.14e-11 | 57.8 |
Msa1323420 | MtrunA17_Chr4g0049901 | 37.255 | 102 | 55 | 2 | 9 | 101 | 42 | 143 | 1.14e-11 | 60.8 |
Msa1323420 | MtrunA17_Chr2g0279821 | 38.889 | 72 | 43 | 1 | 9 | 80 | 16 | 86 | 1.45e-11 | 60.8 |
Msa1323420 | MtrunA17_Chr3g0093131 | 42.623 | 61 | 34 | 1 | 12 | 71 | 36 | 96 | 2.00e-11 | 59.7 |
Msa1323420 | MtrunA17_Chr8g0380021 | 31.183 | 93 | 64 | 0 | 10 | 102 | 33 | 125 | 2.37e-11 | 60.1 |
Msa1323420 | MtrunA17_Chr3g0142191 | 48.148 | 54 | 28 | 0 | 4 | 57 | 11 | 64 | 3.43e-11 | 59.7 |
Msa1323420 | MtrunA17_Chr4g0025531 | 31.250 | 96 | 54 | 2 | 12 | 101 | 26 | 115 | 5.66e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1323420 | AT2G34440.1 | 36.585 | 164 | 91 | 2 | 1 | 151 | 8 | 171 | 2.54e-29 | 106 |
Msa1323420 | AT3G66656.1 | 47.500 | 120 | 57 | 2 | 1 | 114 | 8 | 127 | 5.12e-27 | 100 |
Msa1323420 | AT2G24840.1 | 42.982 | 114 | 60 | 2 | 1 | 110 | 69 | 181 | 2.26e-25 | 98.6 |
Msa1323420 | AT5G60440.1 | 40.441 | 136 | 70 | 4 | 1 | 129 | 13 | 144 | 1.45e-21 | 89.0 |
Msa1323420 | AT4G36590.1 | 38.667 | 150 | 67 | 5 | 11 | 150 | 23 | 157 | 7.51e-21 | 86.3 |
Msa1323420 | AT1G01530.1 | 37.778 | 135 | 76 | 3 | 11 | 141 | 23 | 153 | 1.47e-18 | 80.1 |
Msa1323420 | AT1G65360.1 | 38.281 | 128 | 60 | 4 | 11 | 129 | 23 | 140 | 2.02e-17 | 76.6 |
Msa1323420 | AT1G72350.1 | 39.623 | 106 | 57 | 3 | 10 | 115 | 58 | 156 | 3.28e-16 | 73.6 |
Msa1323420 | AT1G28460.1 | 46.667 | 60 | 32 | 0 | 4 | 63 | 17 | 76 | 2.92e-15 | 70.1 |
Msa1323420 | AT1G29962.1 | 46.032 | 63 | 34 | 0 | 4 | 66 | 17 | 79 | 4.65e-15 | 69.7 |
Msa1323420 | AT1G17310.1 | 53.448 | 58 | 25 | 1 | 10 | 67 | 63 | 118 | 1.22e-14 | 68.9 |
Msa1323420 | AT1G17310.2 | 53.448 | 58 | 25 | 1 | 10 | 67 | 74 | 129 | 1.72e-14 | 68.9 |
Msa1323420 | AT4G24540.1 | 37.500 | 72 | 45 | 0 | 9 | 80 | 16 | 87 | 4.67e-14 | 67.8 |
Msa1323420 | AT4G22950.2 | 43.548 | 62 | 35 | 0 | 1 | 62 | 8 | 69 | 1.06e-13 | 65.9 |
Msa1323420 | AT2G45660.2 | 32.653 | 98 | 66 | 0 | 1 | 98 | 8 | 105 | 1.44e-13 | 65.1 |
Msa1323420 | AT1G47760.1 | 28.276 | 145 | 94 | 3 | 10 | 147 | 17 | 158 | 2.15e-13 | 65.1 |
Msa1323420 | AT2G45660.1 | 32.653 | 98 | 66 | 0 | 1 | 98 | 8 | 105 | 3.72e-13 | 65.1 |
Msa1323420 | AT3G04100.1 | 44.262 | 61 | 31 | 1 | 10 | 67 | 29 | 89 | 4.09e-13 | 64.7 |
Msa1323420 | AT4G22950.3 | 43.548 | 62 | 35 | 0 | 1 | 62 | 8 | 69 | 6.38e-13 | 64.7 |
Msa1323420 | AT4G22950.1 | 43.548 | 62 | 35 | 0 | 1 | 62 | 8 | 69 | 6.38e-13 | 64.7 |
Msa1323420 | AT2G22630.1 | 51.852 | 54 | 26 | 0 | 9 | 62 | 16 | 69 | 1.14e-12 | 63.9 |
Msa1323420 | AT2G22630.2 | 51.852 | 54 | 26 | 0 | 9 | 62 | 16 | 69 | 1.14e-12 | 63.9 |
Msa1323420 | AT2G22540.3 | 38.202 | 89 | 53 | 2 | 9 | 96 | 16 | 103 | 3.08e-12 | 62.8 |
Msa1323420 | AT2G22540.1 | 38.202 | 89 | 53 | 2 | 9 | 96 | 16 | 103 | 3.08e-12 | 62.8 |
Msa1323420 | AT3G61120.1 | 42.105 | 76 | 39 | 2 | 4 | 74 | 8 | 83 | 3.14e-12 | 63.2 |
Msa1323420 | AT4G11880.2 | 48.148 | 54 | 28 | 0 | 1 | 54 | 8 | 61 | 3.84e-12 | 61.6 |
Msa1323420 | AT4G11880.3 | 48.148 | 54 | 28 | 0 | 1 | 54 | 8 | 61 | 3.84e-12 | 61.6 |
Msa1323420 | AT3G57230.2 | 42.373 | 59 | 34 | 0 | 4 | 62 | 11 | 69 | 4.28e-12 | 60.8 |
Msa1323420 | AT5G65070.4 | 33.945 | 109 | 68 | 3 | 4 | 109 | 11 | 118 | 5.05e-12 | 60.8 |
Msa1323420 | AT4G37940.1 | 48.148 | 54 | 28 | 0 | 9 | 62 | 16 | 69 | 9.67e-12 | 61.6 |
Msa1323420 | AT4G11880.4 | 48.148 | 54 | 28 | 0 | 1 | 54 | 8 | 61 | 9.97e-12 | 61.2 |
Msa1323420 | AT4G11880.1 | 48.148 | 54 | 28 | 0 | 1 | 54 | 8 | 61 | 9.97e-12 | 61.2 |
Msa1323420 | AT5G65070.1 | 33.077 | 130 | 80 | 4 | 4 | 127 | 11 | 139 | 1.12e-11 | 60.8 |
Msa1323420 | AT4G37940.4 | 48.148 | 54 | 28 | 0 | 9 | 62 | 16 | 69 | 1.38e-11 | 60.8 |
Msa1323420 | AT3G57390.3 | 48.148 | 54 | 28 | 0 | 9 | 62 | 16 | 69 | 1.39e-11 | 60.8 |
Msa1323420 | AT3G54340.1 | 38.272 | 81 | 35 | 1 | 10 | 75 | 17 | 97 | 2.05e-11 | 60.5 |
Msa1323420 | AT3G57390.1 | 48.148 | 54 | 28 | 0 | 9 | 62 | 16 | 69 | 2.10e-11 | 60.8 |
Msa1323420 | AT4G37940.3 | 43.939 | 66 | 33 | 1 | 9 | 70 | 16 | 81 | 2.97e-11 | 59.3 |
Msa1323420 | AT1G28450.1 | 39.683 | 63 | 38 | 0 | 4 | 66 | 17 | 79 | 4.48e-11 | 58.9 |
Msa1323420 | AT5G51870.1 | 42.593 | 54 | 31 | 0 | 9 | 62 | 16 | 69 | 8.04e-11 | 58.5 |
Find 44 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGAATAAACCTTACTCTTT+TGG | 0.260036 | 8_4:-31755728 | Msa1323420:CDS |
GAATACAACAATAACAATTT+TGG | 0.284019 | 8_4:+31755757 | None:intergenic |
CCATCACCTTCTCATGTTGT+TGG | 0.285658 | 8_4:+31755606 | None:intergenic |
TGTTAGAGGAAGGGGTTTCT+AGG | 0.312060 | 8_4:+31755642 | None:intergenic |
ATTAATGGAGCTCAAGGATA+TGG | 0.358058 | 8_4:-31755483 | Msa1323420:CDS |
GGAATGGAAAGATTCATTAA+TGG | 0.365090 | 8_4:-31755498 | Msa1323420:CDS |
ACATTCTCAAAGCGCCGAAT+GGG | 0.416565 | 8_4:-31755821 | Msa1323420:CDS |
TTCTAGGACATCGTTTAGAT+CGG | 0.426926 | 8_4:+31755658 | None:intergenic |
GTTCAGATCATCTATGTTAG+AGG | 0.427003 | 8_4:+31755628 | None:intergenic |
ATCATCTATGTTAGAGGAAG+GGG | 0.438239 | 8_4:+31755634 | None:intergenic |
GTTATTGTTGTATTCTCTCC+CGG | 0.443926 | 8_4:-31755749 | Msa1323420:CDS |
TGATATAGCTGAGGCTGAAA+AGG | 0.444985 | 8_4:-31755582 | Msa1323420:CDS |
AATCTTTCCATTCCTTAGGC+TGG | 0.454254 | 8_4:+31755507 | None:intergenic |
AAAAGAGTAAGGTTTATTCC+CGG | 0.457419 | 8_4:+31755730 | None:intergenic |
AATGTGACTTGTCTCGCCTC+TGG | 0.460805 | 8_4:+31755839 | None:intergenic |
TCTAGGACATCGTTTAGATC+GGG | 0.468128 | 8_4:+31755659 | None:intergenic |
CACATTCTCAAAGCGCCGAA+TGG | 0.503482 | 8_4:-31755822 | Msa1323420:CDS |
CTCGCAAAGGAGCCCGTGGT+TGG | 0.507286 | 8_4:-31755413 | Msa1323420:CDS |
CTAGGGTGGCCAAAAGAGTA+AGG | 0.515417 | 8_4:+31755719 | None:intergenic |
AATGAATCTTTCCATTCCTT+AGG | 0.516915 | 8_4:+31755503 | None:intergenic |
TATGCTAAAAGAATACAAAT+CGG | 0.519499 | 8_4:-31755540 | Msa1323420:CDS |
AGATTCATTAATGGAGCTCA+AGG | 0.527990 | 8_4:-31755489 | Msa1323420:CDS |
TGAGGCTGAAAAGGAAGATA+AGG | 0.530489 | 8_4:-31755573 | Msa1323420:CDS |
AACGAGCTTGCCATCTTGTG+TGG | 0.537015 | 8_4:-31755782 | Msa1323420:CDS |
AAAGAGTAAGGTTTATTCCC+GGG | 0.547640 | 8_4:+31755731 | None:intergenic |
CTCCTTTGCGAGGAGCATCA+TGG | 0.550709 | 8_4:+31755424 | None:intergenic |
TTATTGTTGTATTCTCTCCC+GGG | 0.551946 | 8_4:-31755748 | Msa1323420:CDS |
CAACCACGGGCTCCTTTGCG+AGG | 0.553129 | 8_4:+31755414 | None:intergenic |
AGATCATCTATGTTAGAGGA+AGG | 0.556275 | 8_4:+31755632 | None:intergenic |
GATCATCTATGTTAGAGGAA+GGG | 0.557711 | 8_4:+31755633 | None:intergenic |
AACCAAGTCACAGAAAAGAA+AGG | 0.564249 | 8_4:-31755383 | Msa1323420:CDS |
TACTCAGCCAGCCTAAGGAA+TGG | 0.566847 | 8_4:-31755514 | Msa1323420:CDS |
GCTCCTCGCAAAGGAGCCCG+TGG | 0.600673 | 8_4:-31755417 | Msa1323420:CDS |
GTCCATGATGCTCCTCGCAA+AGG | 0.601271 | 8_4:-31755426 | Msa1323420:CDS |
GACGCAATAACATCAACACT+AGG | 0.604270 | 8_4:+31755701 | None:intergenic |
TCTGAACCAACAACATGAGA+AGG | 0.616384 | 8_4:-31755612 | Msa1323420:CDS |
ACGAGCTTGCCATCTTGTGT+GGG | 0.628479 | 8_4:-31755781 | Msa1323420:CDS |
GCGCAAAATTGAGATGGCGA+TGG | 0.635830 | 8_4:-31755870 | None:intergenic |
AAAGGAAGATAAGGCCAATG+AGG | 0.641735 | 8_4:-31755564 | Msa1323420:CDS |
CATTCTCAAAGCGCCGAATG+GGG | 0.649352 | 8_4:-31755820 | Msa1323420:CDS |
ACGCAATAACATCAACACTA+GGG | 0.661050 | 8_4:+31755702 | None:intergenic |
CAATAACATCAACACTAGGG+TGG | 0.691090 | 8_4:+31755705 | None:intergenic |
CCAACAACATGAGAAGGTGA+TGG | 0.695579 | 8_4:-31755606 | Msa1323420:CDS |
GGTGATGGCTGATATAGCTG+AGG | 0.696275 | 8_4:-31755591 | Msa1323420:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GAATACAACAATAACAATTT+TGG | + | chr8_4:31755476-31755495 | None:intergenic | 20.0% |
!! | TATGCTAAAAGAATACAAAT+CGG | - | chr8_4:31755690-31755709 | Msa1323420:CDS | 20.0% |
!!! | CTTTTTTGAATAACCCCATT+CGG | + | chr8_4:31755426-31755445 | None:intergenic | 30.0% |
AAAAGAGTAAGGTTTATTCC+CGG | + | chr8_4:31755503-31755522 | None:intergenic | 30.0% | |
! | TTCTTTTAGCATATCCTCAT+TGG | + | chr8_4:31755683-31755702 | None:intergenic | 30.0% |
AATGAATCTTTCCATTCCTT+AGG | + | chr8_4:31755730-31755749 | None:intergenic | 30.0% | |
GGAATGGAAAGATTCATTAA+TGG | - | chr8_4:31755732-31755751 | Msa1323420:CDS | 30.0% | |
!! | TTGGTTTTTAATTCCAACCA+CGG | + | chr8_4:31755833-31755852 | None:intergenic | 30.0% |
GTTATTGTTGTATTCTCTCC+CGG | - | chr8_4:31755481-31755500 | Msa1323420:CDS | 35.0% | |
TTATTGTTGTATTCTCTCCC+GGG | - | chr8_4:31755482-31755501 | Msa1323420:CDS | 35.0% | |
AAAGAGTAAGGTTTATTCCC+GGG | + | chr8_4:31755502-31755521 | None:intergenic | 35.0% | |
! | GGGAATAAACCTTACTCTTT+TGG | - | chr8_4:31755502-31755521 | Msa1323420:CDS | 35.0% |
ACGCAATAACATCAACACTA+GGG | + | chr8_4:31755531-31755550 | None:intergenic | 35.0% | |
!! | TTCTAGGACATCGTTTAGAT+CGG | + | chr8_4:31755575-31755594 | None:intergenic | 35.0% |
ATCATCTATGTTAGAGGAAG+GGG | + | chr8_4:31755599-31755618 | None:intergenic | 35.0% | |
GATCATCTATGTTAGAGGAA+GGG | + | chr8_4:31755600-31755619 | None:intergenic | 35.0% | |
AGATCATCTATGTTAGAGGA+AGG | + | chr8_4:31755601-31755620 | None:intergenic | 35.0% | |
GTTCAGATCATCTATGTTAG+AGG | + | chr8_4:31755605-31755624 | None:intergenic | 35.0% | |
AGATTCATTAATGGAGCTCA+AGG | - | chr8_4:31755741-31755760 | Msa1323420:CDS | 35.0% | |
ATTAATGGAGCTCAAGGATA+TGG | - | chr8_4:31755747-31755766 | Msa1323420:CDS | 35.0% | |
!! | TGGTTTTTAATTCCAACCAC+GGG | + | chr8_4:31755832-31755851 | None:intergenic | 35.0% |
AACCAAGTCACAGAAAAGAA+AGG | - | chr8_4:31755847-31755866 | Msa1323420:CDS | 35.0% | |
! | TTCCTTTCTTTTCTGTGACT+TGG | + | chr8_4:31755852-31755871 | None:intergenic | 35.0% |
!! | AATTTTGGTCCCACACAAGA+TGG | + | chr8_4:31755461-31755480 | None:intergenic | 40.0% |
CAATAACATCAACACTAGGG+TGG | + | chr8_4:31755528-31755547 | None:intergenic | 40.0% | |
GACGCAATAACATCAACACT+AGG | + | chr8_4:31755532-31755551 | None:intergenic | 40.0% | |
! | TCTAGGACATCGTTTAGATC+GGG | + | chr8_4:31755574-31755593 | None:intergenic | 40.0% |
TCTGAACCAACAACATGAGA+AGG | - | chr8_4:31755618-31755637 | Msa1323420:CDS | 40.0% | |
TGATATAGCTGAGGCTGAAA+AGG | - | chr8_4:31755648-31755667 | Msa1323420:CDS | 40.0% | |
TGAGGCTGAAAAGGAAGATA+AGG | - | chr8_4:31755657-31755676 | Msa1323420:CDS | 40.0% | |
AAAGGAAGATAAGGCCAATG+AGG | - | chr8_4:31755666-31755685 | Msa1323420:CDS | 40.0% | |
AATCTTTCCATTCCTTAGGC+TGG | + | chr8_4:31755726-31755745 | None:intergenic | 40.0% | |
!! | ACATTCTCAAAGCGCCGAAT+GGG | - | chr8_4:31755409-31755428 | Msa1323420:CDS | 45.0% |
TGTTAGAGGAAGGGGTTTCT+AGG | + | chr8_4:31755591-31755610 | None:intergenic | 45.0% | |
CCATCACCTTCTCATGTTGT+TGG | + | chr8_4:31755627-31755646 | None:intergenic | 45.0% | |
CCAACAACATGAGAAGGTGA+TGG | - | chr8_4:31755624-31755643 | Msa1323420:CDS | 45.0% | |
GGCGATGGTGAAAAAACCAG+AGG | - | chr8_4:31755375-31755394 | Msa1323420:CDS | 50.0% | |
! | AATGTGACTTGTCTCGCCTC+TGG | + | chr8_4:31755394-31755413 | None:intergenic | 50.0% |
!! | CACATTCTCAAAGCGCCGAA+TGG | - | chr8_4:31755408-31755427 | Msa1323420:CDS | 50.0% |
!! | CATTCTCAAAGCGCCGAATG+GGG | - | chr8_4:31755410-31755429 | Msa1323420:CDS | 50.0% |
AACGAGCTTGCCATCTTGTG+TGG | - | chr8_4:31755448-31755467 | Msa1323420:CDS | 50.0% | |
ACGAGCTTGCCATCTTGTGT+GGG | - | chr8_4:31755449-31755468 | Msa1323420:CDS | 50.0% | |
CTAGGGTGGCCAAAAGAGTA+AGG | + | chr8_4:31755514-31755533 | None:intergenic | 50.0% | |
! | GGTGATGGCTGATATAGCTG+AGG | - | chr8_4:31755639-31755658 | Msa1323420:CDS | 50.0% |
TACTCAGCCAGCCTAAGGAA+TGG | - | chr8_4:31755716-31755735 | Msa1323420:CDS | 50.0% | |
GTCCATGATGCTCCTCGCAA+AGG | - | chr8_4:31755804-31755823 | Msa1323420:CDS | 55.0% | |
!! | CTCCTTTGCGAGGAGCATCA+TGG | + | chr8_4:31755809-31755828 | None:intergenic | 55.0% |
GGCACTACTCAGCCAGCCTA+AGG | - | chr8_4:31755711-31755730 | Msa1323420:CDS | 60.0% | |
CAACCACGGGCTCCTTTGCG+AGG | + | chr8_4:31755819-31755838 | None:intergenic | 65.0% | |
CTCGCAAAGGAGCCCGTGGT+TGG | - | chr8_4:31755817-31755836 | Msa1323420:CDS | 65.0% | |
GCTCCTCGCAAAGGAGCCCG+TGG | - | chr8_4:31755813-31755832 | Msa1323420:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 31755373 | 31755879 | 31755373 | ID=Msa1323420;Name=Msa1323420 |
chr8_4 | mRNA | 31755373 | 31755879 | 31755373 | ID=Msa1323420-mRNA-1;Parent=Msa1323420;Name=Msa1323420-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|168 |
chr8_4 | exon | 31755373 | 31755879 | 31755373 | ID=Msa1323420-mRNA-1:exon:10337;Parent=Msa1323420-mRNA-1 |
chr8_4 | CDS | 31755373 | 31755879 | 31755373 | ID=Msa1323420-mRNA-1:cds;Parent=Msa1323420-mRNA-1 |
Gene Sequence |
Protein sequence |