AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1323540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323540 MtrunA17_Chr8g0356211 81.847 314 40 3 69 366 1 313 0.0 521
Msa1323540 MtrunA17_Chr8g0385791 48.013 302 139 5 3 289 101 399 3.22e-86 278
Msa1323540 MtrunA17_Chr2g0276781 45.638 298 145 5 2 285 64 358 2.93e-80 258
Msa1323540 MtrunA17_Chr8g0346711 44.850 301 148 8 2 288 70 366 6.69e-75 244
Msa1323540 MtrunA17_Chr4g0009751 43.771 297 149 6 3 285 61 353 1.48e-71 234
Msa1323540 MtrunA17_Chr7g0239061 43.390 295 149 6 3 283 56 346 5.23e-71 234
Msa1323540 MtrunA17_Chr4g0029671 40.123 324 162 8 1 296 93 412 3.95e-70 234
Msa1323540 MtrunA17_Chr4g0046371 41.176 306 150 7 7 285 78 380 1.15e-69 231
Msa1323540 MtrunA17_Chr2g0282961 41.584 303 150 6 7 285 92 391 1.46e-66 221
Msa1323540 MtrunA17_Chr2g0326281 38.462 325 156 8 1 285 95 415 1.66e-64 219
Msa1323540 MtrunA17_Chr1g0156321 43.144 299 145 9 2 281 84 376 2.38e-61 211
Msa1323540 MtrunA17_Chr5g0433301 42.000 300 152 9 2 283 65 360 2.61e-60 208
Msa1323540 MtrunA17_Chr8g0376771 41.946 298 152 8 3 283 65 358 5.42e-60 207
Msa1323540 MtrunA17_Chr2g0285461 42.809 299 149 9 3 283 65 359 9.75e-60 207
Msa1323540 MtrunA17_Chr4g0070181 37.500 336 172 9 3 308 64 391 1.68e-58 204
Msa1323540 MtrunA17_Chr3g0109391 40.803 299 157 8 2 283 67 362 4.79e-58 202
Msa1323540 MtrunA17_Chr2g0301251 41.060 302 155 9 3 286 64 360 5.13e-58 203
Msa1323540 MtrunA17_Chr8g0389081 39.016 305 156 9 1 283 72 368 7.39e-55 194
Msa1323540 MtrunA17_Chr2g0326761 33.429 347 179 7 5 301 50 394 1.24e-50 179
Msa1323540 MtrunA17_Chr4g0028971 32.754 345 168 7 12 299 56 393 1.64e-49 176
Msa1323540 MtrunA17_Chr1g0199681 33.437 323 166 7 8 281 135 457 3.45e-46 167
Msa1323540 MtrunA17_Chr1g0181211 30.811 370 186 10 8 307 69 438 4.04e-46 167
Msa1323540 MtrunA17_Chr7g0264171 30.618 356 172 12 8 299 73 417 2.05e-43 159
Msa1323540 MtrunA17_Chr7g0264161 31.655 278 159 7 8 264 34 301 2.63e-38 139
Msa1323540 MtrunA17_Chr5g0417281 29.643 280 185 5 12 284 60 334 5.13e-37 140
Msa1323540 MtrunA17_Chr3g0115271 30.539 334 179 10 12 296 66 395 1.19e-33 131
Msa1323540 MtrunA17_Chr5g0424931 28.188 298 184 4 14 281 70 367 1.08e-32 128
Msa1323540 MtrunA17_Chr1g0178011 29.153 295 188 8 1 281 51 338 6.04e-30 119
Msa1323540 MtrunA17_Chr5g0436761 27.852 298 192 7 12 298 61 346 3.46e-28 114
Msa1323540 MtrunA17_Chr2g0289221 28.794 257 170 7 14 264 72 321 1.49e-27 111
Msa1323540 MtrunA17_Chr2g0277461 29.066 289 168 8 13 281 65 336 1.76e-25 107
Msa1323540 MtrunA17_Chr5g0417211 28.077 260 176 4 12 265 61 315 3.35e-25 105
Msa1323540 MtrunA17_Chr5g0425661 31.757 148 97 1 9 152 80 227 1.85e-20 89.4
Msa1323540 MtrunA17_Chr5g0424741 24.299 321 187 14 9 281 58 370 7.90e-18 84.7
Msa1323540 MtrunA17_Chr5g0424801 26.087 299 172 13 10 281 59 335 1.26e-17 83.6
Msa1323540 MtrunA17_Chr5g0425261 25.418 299 174 13 10 281 59 335 2.88e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323540 AT5G62000.2 46.711 304 144 5 1 289 101 401 2.62e-89 286
Msa1323540 AT5G62000.5 46.711 304 144 5 1 289 101 401 2.62e-89 286
Msa1323540 AT5G62000.3 46.711 304 144 5 1 289 101 401 2.62e-89 286
Msa1323540 AT5G62000.1 46.711 304 144 5 1 289 101 401 2.62e-89 286
Msa1323540 AT5G62000.4 46.711 304 144 5 1 289 101 401 3.44e-89 286
Msa1323540 AT1G59750.4 42.617 298 152 6 1 283 62 355 8.61e-76 247
Msa1323540 AT1G59750.1 42.617 298 152 6 1 283 62 355 1.01e-75 246
Msa1323540 AT1G59750.3 42.617 298 152 6 1 283 62 355 1.01e-75 246
Msa1323540 AT1G59750.2 42.617 298 152 6 1 283 62 355 1.05e-75 246
Msa1323540 AT3G61830.2 44.068 295 147 7 2 283 16 305 1.88e-75 243
Msa1323540 AT3G61830.1 44.068 295 147 7 2 283 67 356 7.59e-75 243
Msa1323540 AT2G46530.1 42.712 295 153 6 2 284 63 353 5.98e-73 238
Msa1323540 AT2G46530.3 42.712 295 153 6 2 284 84 374 9.44e-73 238
Msa1323540 AT4G23980.2 42.857 308 152 10 4 292 56 358 5.67e-70 231
Msa1323540 AT4G23980.1 42.857 308 152 10 4 292 56 358 6.90e-70 231
Msa1323540 AT5G60450.2 40.312 320 161 8 1 294 80 395 1.31e-67 227
Msa1323540 AT5G60450.1 40.312 320 161 8 1 294 104 419 2.19e-67 227
Msa1323540 AT2G33860.1 38.487 304 160 5 6 285 92 392 5.98e-65 217
Msa1323540 AT1G19850.1 42.000 300 148 10 2 281 95 388 3.07e-61 211
Msa1323540 AT1G19850.2 42.000 300 148 10 2 281 84 377 3.12e-61 211
Msa1323540 AT2G46530.2 43.882 237 118 5 59 284 34 266 3.63e-61 205
Msa1323540 AT5G37020.2 41.611 298 154 8 3 283 64 358 2.28e-60 207
Msa1323540 AT1G19220.1 41.391 302 154 8 3 286 64 360 3.51e-60 209
Msa1323540 AT5G37020.1 41.611 298 154 8 3 283 64 358 4.00e-60 207
Msa1323540 AT1G34310.1 37.113 291 166 6 4 283 70 354 1.17e-57 197
Msa1323540 AT1G35540.1 37.457 291 165 6 4 283 70 354 2.13e-57 197
Msa1323540 AT1G34170.1 39.057 297 154 10 4 283 68 354 2.15e-57 194
Msa1323540 AT5G20730.3 39.934 303 158 8 3 286 65 362 4.50e-57 201
Msa1323540 AT5G20730.2 40.066 302 158 8 3 286 65 361 4.88e-57 201
Msa1323540 AT5G20730.1 39.934 303 158 8 3 286 65 362 7.75e-57 200
Msa1323540 AT2G33860.2 41.772 237 122 4 62 285 2 235 1.03e-56 191
Msa1323540 AT1G35240.1 37.543 293 166 7 4 285 70 356 1.79e-56 194
Msa1323540 AT1G30330.1 40.940 298 156 8 3 283 65 359 2.55e-55 195
Msa1323540 AT1G30330.3 40.940 298 156 8 3 283 67 361 2.60e-55 195
Msa1323540 AT1G30330.2 40.940 298 156 8 3 283 67 361 2.60e-55 195
Msa1323540 AT1G34410.1 36.770 291 167 7 4 283 70 354 2.92e-54 188
Msa1323540 AT1G34390.1 37.801 291 162 8 4 283 70 352 4.57e-53 185
Msa1323540 AT1G35520.1 35.395 291 171 6 4 283 70 354 1.95e-52 183
Msa1323540 AT1G34170.2 38.889 288 141 9 4 283 68 328 4.09e-52 180
Msa1323540 AT5G37020.3 44.492 236 114 6 62 283 31 263 8.01e-52 183
Msa1323540 AT1G34170.3 38.889 288 141 9 4 283 68 328 1.53e-51 180
Msa1323540 AT2G28350.2 32.941 340 164 8 4 281 44 381 5.34e-50 178
Msa1323540 AT2G28350.1 32.941 340 164 8 4 281 44 381 6.52e-50 178
Msa1323540 AT4G30080.1 33.233 331 171 10 1 281 53 383 1.19e-47 171
Msa1323540 AT1G77850.2 31.173 324 164 8 10 281 61 377 9.30e-41 151
Msa1323540 AT1G77850.1 31.173 324 164 8 10 281 61 377 1.05e-40 151
Msa1323540 AT1G43950.1 41.139 158 88 2 4 161 70 222 4.95e-34 125
Msa1323540 AT1G01030.2 37.500 96 59 1 56 151 50 144 1.41e-11 65.5
Msa1323540 AT1G01030.1 37.500 96 59 1 56 151 50 144 2.11e-11 65.1
Msa1323540 AT4G01500.1 37.778 90 53 2 62 151 36 122 5.45e-11 63.5
Msa1323540 AT2G36080.4 36.190 105 63 2 62 162 38 142 5.66e-11 61.2
Msa1323540 AT2G36080.2 36.190 105 63 2 62 162 38 142 5.66e-11 61.2

Find 79 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACATTATGATCACCTTCT+TGG 0.264286 8_4:-31964906 None:intergenic
AGTTGTGGGTGTTCAATTAA+AGG 0.274617 8_4:+31961878 Msa1323540:CDS
GGACAAACCCTCTCAATATT+TGG 0.276281 8_4:-31965415 None:intergenic
TTAGAAGGCAAATGATAGTT+AGG 0.299166 8_4:-31961843 None:intergenic
ATATCCACTTTGTGATATTC+AGG 0.303834 8_4:-31965682 None:intergenic
CTAAAAGAGTAGATTTCATT+AGG 0.304482 8_4:-31962395 None:intergenic
AGGGGAGAGAATGGTGAAAT+TGG 0.305389 8_4:+31964486 Msa1323540:intron
GTTGTCCATGCTGTTTCTAT+TGG 0.311077 8_4:+31964609 Msa1323540:CDS
TGAATATCACAAAGTGGATA+TGG 0.327346 8_4:+31965684 Msa1323540:CDS
TCCATGGTGGATTGAGCCTT+TGG 0.330320 8_4:+31965435 Msa1323540:CDS
GAGAATGGTGAAATTGGTAT+TGG 0.352900 8_4:+31964492 Msa1323540:CDS
CATCTATCTGCATGTTGCTT+TGG 0.355107 8_4:-31962467 None:intergenic
TTCTGAACCAGGCCACCTAA+TGG 0.364231 8_4:-31965248 None:intergenic
CCATGGTGGATTGAGCCTTT+GGG 0.374994 8_4:+31965436 Msa1323540:CDS
AACTCTAAAAGCCTTCTTCC+TGG 0.382279 8_4:+31964263 Msa1323540:CDS
TTATTTGATAAAGGGAGAAT+TGG 0.387439 8_4:-31965487 None:intergenic
TAGTAAGTTGCTCACTTCAA+TGG 0.390845 8_4:+31962415 Msa1323540:CDS
GCAACAAGAATATGCATTAG+AGG 0.392171 8_4:+31962352 Msa1323540:intron
AGAATGGTGAAATTGGTATT+GGG 0.394064 8_4:+31964493 Msa1323540:CDS
GTGAAATTGGTATTGGGATT+CGG 0.397543 8_4:+31964499 Msa1323540:CDS
TATAGGTATGGTACAATAGT+TGG 0.409092 8_4:+31965208 Msa1323540:intron
AATGCCCTTCAACATAATCT+TGG 0.411071 8_4:-31965464 None:intergenic
GAGGACAATCATGCACTTCA+TGG 0.415546 8_4:+31962371 Msa1323540:CDS
CATCTCCTCTTAGGTGCAAT+GGG 0.419644 8_4:+31965384 Msa1323540:intron
GCCACAAGATCTTGCATTGG+TGG 0.424734 8_4:-31963040 None:intergenic
TCTGAACCAGGCCACCTAAT+GGG 0.429682 8_4:-31965247 None:intergenic
CAAAGGAATCATAAATTCAA+AGG 0.441039 8_4:-31964805 None:intergenic
GATCTTGCATTGGTGGTTGA+AGG 0.449699 8_4:-31963033 None:intergenic
AGAGCACACTTGCTTACTAA+TGG 0.459202 8_4:+31964224 Msa1323540:CDS
AACTGAGTAGTCTTTCTCAA+TGG 0.461873 8_4:-31964844 None:intergenic
ATTGATCCCATTAGGTGGCC+TGG 0.478400 8_4:+31965241 Msa1323540:CDS
TGTTATTGTAGGGGAGAGAA+TGG 0.481096 8_4:+31964477 Msa1323540:intron
ATGAAGATATTGATCCCATT+AGG 0.481523 8_4:+31965233 Msa1323540:CDS
ATGCCCTTCAACATAATCTT+GGG 0.482861 8_4:-31965463 None:intergenic
ACATCTCCTCTTAGGTGCAA+TGG 0.483251 8_4:+31965383 Msa1323540:intron
CACACTTGCTTACTAATGGT+TGG 0.485940 8_4:+31964228 Msa1323540:CDS
ATCTCCCAAGATTATGTTGA+AGG 0.486743 8_4:+31965459 Msa1323540:CDS
AAAGGAATCATAAATTCAAA+GGG 0.491970 8_4:-31964804 None:intergenic
CGCATGAATCTCCAGGAAGA+AGG 0.494401 8_4:-31964274 None:intergenic
TTATTGTTATCAGATATAGC+TGG 0.495204 8_4:+31965646 Msa1323540:intron
AAACATTCAACTTGGAGCAT+TGG 0.497605 8_4:+31964581 Msa1323540:CDS
TATTGAAATAATTATAGAAG+AGG 0.507071 8_4:-31965817 None:intergenic
TCACAAAGTGGATATGGACT+TGG 0.522885 8_4:+31965690 Msa1323540:CDS
AGGACATGCATGGAATTGAA+TGG 0.531700 8_4:+31963065 Msa1323540:CDS
ATCTTGCATTGGTGGTTGAA+GGG 0.544075 8_4:-31963032 None:intergenic
GAAGGTCAACAATACAGTGC+TGG 0.549383 8_4:+31965712 Msa1323540:CDS
TATTGTTATCAGATATAGCT+GGG 0.550188 8_4:+31965647 Msa1323540:intron
TCAAGTCAAAACATTCAACT+TGG 0.553845 8_4:+31964573 Msa1323540:CDS
ATTGAGAAAGACTACTCAGT+TGG 0.556162 8_4:+31964846 Msa1323540:CDS
TTCGCCACAAGATCTTGCAT+TGG 0.561728 8_4:-31963043 None:intergenic
ATACATCTCCATTCTGAACC+AGG 0.563789 8_4:-31965259 None:intergenic
TAAGCTAAAACAAACCAGAT+GGG 0.570528 8_4:-31962495 None:intergenic
TTCAGAATGGAGATGTATCA+AGG 0.571681 8_4:+31965264 Msa1323540:CDS
TACATTATTTCCATTGCTCG+AGG 0.574951 8_4:+31962024 Msa1323540:CDS
AAATAACTAACCTCGAGCAA+TGG 0.576524 8_4:-31962034 None:intergenic
ATATTGAGAGGGTTTGTCCA+TGG 0.576814 8_4:+31965419 Msa1323540:CDS
ACCACCAATGCAAGATCTTG+TGG 0.580075 8_4:+31963039 Msa1323540:CDS
TTTCATACCAAATATTGAGA+GGG 0.580552 8_4:+31965408 Msa1323540:CDS
TAAACCTGAATATCACAAAG+TGG 0.587495 8_4:+31965678 Msa1323540:CDS
AATGCAAGATCTTGTGGCGA+AGG 0.588176 8_4:+31963045 Msa1323540:CDS
TTAGGTGGCCTGGTTCAGAA+TGG 0.591720 8_4:+31965251 Msa1323540:CDS
ATTTCATACCAAATATTGAG+AGG 0.595944 8_4:+31965407 Msa1323540:CDS
AGACTACTCAGTTGGAAGGA+GGG 0.596500 8_4:+31964854 Msa1323540:CDS
AAGACTACTCAGTTGGAAGG+AGG 0.602756 8_4:+31964853 Msa1323540:CDS
TTGAGAGGGTTTGTCCATGG+TGG 0.604041 8_4:+31965422 Msa1323540:CDS
AGAAAGACTACTCAGTTGGA+AGG 0.604367 8_4:+31964850 Msa1323540:CDS
AAGCTAAAACAAACCAGATG+GGG 0.609072 8_4:-31962494 None:intergenic
AACTTCCAATAGAAACAGCA+TGG 0.614686 8_4:-31964614 None:intergenic
AAGTTGAAGGACGTCCAAGA+AGG 0.626816 8_4:+31964892 Msa1323540:CDS
TCTCCCAAGATTATGTTGAA+GGG 0.629441 8_4:+31965460 Msa1323540:CDS
AGCTAAAACAAACCAGATGG+GGG 0.652605 8_4:-31962493 None:intergenic
AAGATATTGATCCCATTAGG+TGG 0.658591 8_4:+31965236 Msa1323540:CDS
CCCAAAGGCTCAATCCACCA+TGG 0.661329 8_4:-31965436 None:intergenic
CAGATGTTGTCTGAAGTTGA+AGG 0.663022 8_4:+31964879 Msa1323540:CDS
ATAATCTTGGGAGATCCCAA+AGG 0.675503 8_4:-31965451 None:intergenic
CTTGTGGCGAAGGACATGCA+TGG 0.681360 8_4:+31963055 Msa1323540:CDS
TCAATGGAAACAAGTACACA+TGG 0.685853 8_4:+31962431 Msa1323540:CDS
AAAGTGGATATGGACTTGGA+AGG 0.688175 8_4:+31965694 Msa1323540:CDS
ATGGAAACAAGTACACATGG+TGG 0.710626 8_4:+31962434 Msa1323540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTAAATAAAATTA+TGG - chr8_4:31962254-31962273 None:intergenic 0.0%
!! ATATATATATATATATATAA+TGG + chr8_4:31963835-31963854 Msa1323540:intron 0.0%
!! TATATATATATATATATAAT+GGG + chr8_4:31963836-31963855 Msa1323540:intron 0.0%
!! TTGTAAATAATATACTTATT+TGG + chr8_4:31961958-31961977 Msa1323540:intron 10.0%
!!! ATATATTTTATAAAAACATG+TGG - chr8_4:31962195-31962214 None:intergenic 10.0%
!! GTTATAATTAAATAACTTAA+AGG + chr8_4:31963987-31964006 Msa1323540:intron 10.0%
!!! AAATAAAATAGTTGTATTTT+GGG - chr8_4:31964125-31964144 None:intergenic 10.0%
!! AAAATGAATAATAATGTTAT+TGG - chr8_4:31964411-31964430 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963232-31963251 Msa1323540:intron 100.0%
!!! AATCGTTTTTATAAAAAGTA+TGG - chr8_4:31962142-31962161 None:intergenic 15.0%
!! ATATACAATAACATTATCAA+AGG - chr8_4:31962540-31962559 None:intergenic 15.0%
!! AAAAAAATTGTAATTCTACA+GGG - chr8_4:31962658-31962677 None:intergenic 15.0%
!!! AATTTATGATTTTTGATGTT+TGG - chr8_4:31962850-31962869 None:intergenic 15.0%
!! CAAAAATCATAAATTCTATA+CGG + chr8_4:31962855-31962874 Msa1323540:intron 15.0%
!!! AAAAATAAACGACAAATTTT+TGG - chr8_4:31962959-31962978 None:intergenic 15.0%
!! TCTGTTTCATATAAATAAAA+GGG + chr8_4:31963212-31963231 Msa1323540:intron 15.0%
!!! AAGCATTAATTTTTCTTTAA+AGG - chr8_4:31963327-31963346 None:intergenic 15.0%
!!! AATGTTGAAAATTTAAAACT+AGG + chr8_4:31963356-31963375 Msa1323540:intron 15.0%
!! GAAGAAACTAAAATAAAATA+CGG - chr8_4:31963743-31963762 None:intergenic 15.0%
!! AAAGTACAAAAAAACTTAAA+AGG + chr8_4:31963956-31963975 Msa1323540:intron 15.0%
!!! GAAATAAAATAGTTGTATTT+TGG - chr8_4:31964126-31964145 None:intergenic 15.0%
!! TTTCAAATTGTAAAATCATT+TGG - chr8_4:31964673-31964692 None:intergenic 15.0%
!! GTATTTACTAAAATTCATAT+GGG - chr8_4:31965040-31965059 None:intergenic 15.0%
!! TGTATTTACTAAAATTCATA+TGG - chr8_4:31965041-31965060 None:intergenic 15.0%
!!! ACATTTTTGTTTTACTTTAT+AGG + chr8_4:31965191-31965210 Msa1323540:intron 15.0%
!!! TATCTGTTTTATTTGATAAA+GGG - chr8_4:31965498-31965517 None:intergenic 15.0%
!!! ATATCTGTTTTATTTGATAA+AGG - chr8_4:31965499-31965518 None:intergenic 15.0%
!! ATATACTTATTTGGTATTGT+AGG + chr8_4:31961967-31961986 Msa1323540:intron 20.0%
!!! AATATAATTTGGGTTATTAC+TGG + chr8_4:31962320-31962339 Msa1323540:intron 20.0%
!! CAAAAAAATTGTAATTCTAC+AGG - chr8_4:31962659-31962678 None:intergenic 20.0%
!! TAAATTCATAAAAATATGCG+AGG - chr8_4:31962715-31962734 None:intergenic 20.0%
!! CTCTGTTTCATATAAATAAA+AGG + chr8_4:31963211-31963230 Msa1323540:intron 20.0%
!! CTGTTTCATATAAATAAAAG+GGG + chr8_4:31963213-31963232 Msa1323540:intron 20.0%
!! TGTTTCATATAAATAAAAGG+GGG + chr8_4:31963214-31963233 Msa1323540:intron 20.0%
!! AAAACTTAAAACGACTTAAT+TGG + chr8_4:31963527-31963546 Msa1323540:intron 20.0%
!! AATTAACTTAAAGACCTAAA+TGG + chr8_4:31963589-31963608 Msa1323540:intron 20.0%
!!! TAGTTTTTTTTGTACCATTT+AGG - chr8_4:31963606-31963625 None:intergenic 20.0%
!! AAATGGTACAAAAAAAACTA+AGG + chr8_4:31963606-31963625 Msa1323540:intron 20.0%
!!! AATGTATTCCTGATTTTATT+CGG + chr8_4:31963672-31963691 Msa1323540:intron 20.0%
!! AAATACGGAAAATAAAAGTT+AGG - chr8_4:31963728-31963747 None:intergenic 20.0%
!! AGAGAAAAATATGTATAAGA+GGG - chr8_4:31963790-31963809 None:intergenic 20.0%
!! AAGAGAAAAATATGTATAAG+AGG - chr8_4:31963791-31963810 None:intergenic 20.0%
!!! GAAAAAAAAAGCATAAAACT+GGG - chr8_4:31964099-31964118 None:intergenic 20.0%
!!! AGAAAAAAAAAGCATAAAAC+TGG - chr8_4:31964100-31964119 None:intergenic 20.0%
!!! CAACTATTTTATTTCAAGAA+TGG + chr8_4:31964131-31964150 Msa1323540:intron 20.0%
!! ACAATTCTTATGTTATTGTA+GGG + chr8_4:31964467-31964486 Msa1323540:intron 20.0%
!! AAAGGAATCATAAATTCAAA+GGG - chr8_4:31964807-31964826 None:intergenic 20.0%
!! ATCATAATGTCAAATTACTA+TGG + chr8_4:31964917-31964936 Msa1323540:intron 20.0%
!! ATGATACTTATAGTCTATAA+AGG + chr8_4:31965140-31965159 Msa1323540:intron 20.0%
!!! TTTGTTTTACTTTATAGGTA+TGG + chr8_4:31965196-31965215 Msa1323540:intron 20.0%
!!! TATACTTAACTTTTTTAACG+AGG + chr8_4:31965516-31965535 Msa1323540:CDS 20.0%
!!! ATACTTAACTTTTTTAACGA+GGG + chr8_4:31965517-31965536 Msa1323540:CDS 20.0%
!! ACTACGCATAAAATTTTAGA+AGG - chr8_4:31961861-31961880 None:intergenic 25.0%
!! TAAAATTTTATGCGTAGTTG+TGG + chr8_4:31961863-31961882 Msa1323540:CDS 25.0%
!! AAAATTTTATGCGTAGTTGT+GGG + chr8_4:31961864-31961883 Msa1323540:CDS 25.0%
!! GAGGTTAGTTATTTCAAATT+TGG + chr8_4:31962043-31962062 Msa1323540:intron 25.0%
!! GTTAGTTATTTCAAATTTGG+TGG + chr8_4:31962046-31962065 Msa1323540:intron 25.0%
!!! TAATTTTAATCTCTCTCAGT+AGG + chr8_4:31962161-31962180 Msa1323540:intron 25.0%
!!! AATTTTAATCTCTCTCAGTA+GGG + chr8_4:31962162-31962181 Msa1323540:intron 25.0%
! CTAAAAGAGTAGATTTCATT+AGG - chr8_4:31962398-31962417 None:intergenic 25.0%
! CGTATATGTGTGTATATATA+AGG + chr8_4:31962615-31962634 Msa1323540:intron 25.0%
! AGTCCTTATAAAGCAAAATA+AGG + chr8_4:31962795-31962814 Msa1323540:intron 25.0%
!!! CATCCTTATTTTGCTTTATA+AGG - chr8_4:31962801-31962820 None:intergenic 25.0%
! TGTCTTTGTTACATTGTTAT+AGG + chr8_4:31963003-31963022 Msa1323540:intron 25.0%
!! AATTTTCGACATATTTATCG+TGG + chr8_4:31963088-31963107 Msa1323540:CDS 25.0%
! GTTTCATATAAATAAAAGGG+GGG + chr8_4:31963215-31963234 Msa1323540:intron 25.0%
! TTTCATATAAATAAAAGGGG+GGG + chr8_4:31963216-31963235 Msa1323540:intron 25.0%
! TTAAAACGACTTAATTGGTA+TGG + chr8_4:31963532-31963551 Msa1323540:intron 25.0%
!! ATGTATTCCTGATTTTATTC+GGG + chr8_4:31963673-31963692 Msa1323540:intron 25.0%
!!! ATATTTTTAGGGACCATTAT+GGG + chr8_4:31963699-31963718 Msa1323540:intron 25.0%
!!! TTTAGTTTCTTCTTCTTTTG+AGG + chr8_4:31963751-31963770 Msa1323540:intron 25.0%
!! TTAGTTTCTTCTTCTTTTGA+GGG + chr8_4:31963752-31963771 Msa1323540:intron 25.0%
! AGAAAAATATGTATAAGAGG+GGG - chr8_4:31963788-31963807 None:intergenic 25.0%
! GAGAAAAATATGTATAAGAG+GGG - chr8_4:31963789-31963808 None:intergenic 25.0%
!!! ATATATATATAATGGGTGAG+CGG + chr8_4:31963843-31963862 Msa1323540:intron 25.0%
! TAATGGCTAAATTACATCAA+AGG - chr8_4:31964014-31964033 None:intergenic 25.0%
!!! TTTTATTTCATTGCATTCCA+TGG + chr8_4:31964327-31964346 Msa1323540:intron 25.0%
! TTTATTTCATTGCATTCCAT+GGG + chr8_4:31964328-31964347 Msa1323540:intron 25.0%
! TTATGTCATAGAAATTTACG+TGG + chr8_4:31964444-31964463 Msa1323540:intron 25.0%
! GACAATTCTTATGTTATTGT+AGG + chr8_4:31964466-31964485 Msa1323540:intron 25.0%
! CAATTCTTATGTTATTGTAG+GGG + chr8_4:31964468-31964487 Msa1323540:intron 25.0%
!! ACTAATACACATCTTTTGTA+GGG + chr8_4:31964776-31964795 Msa1323540:intron 25.0%
! CAAAGGAATCATAAATTCAA+AGG - chr8_4:31964808-31964827 None:intergenic 25.0%
! ATGTATCAACTAAAACATCA+TGG - chr8_4:31965326-31965345 None:intergenic 25.0%
! ATTTAATTACATCTCCTCTT+AGG + chr8_4:31965375-31965394 Msa1323540:intron 25.0%
! ATTTCATACCAAATATTGAG+AGG + chr8_4:31965407-31965426 Msa1323540:CDS 25.0%
! TTTCATACCAAATATTGAGA+GGG + chr8_4:31965408-31965427 Msa1323540:CDS 25.0%
! TTATTTGATAAAGGGAGAAT+TGG - chr8_4:31965490-31965509 None:intergenic 25.0%
! TTATTGTTATCAGATATAGC+TGG + chr8_4:31965646-31965665 Msa1323540:intron 25.0%
! TATTGTTATCAGATATAGCT+GGG + chr8_4:31965647-31965666 Msa1323540:intron 25.0%
TTAGAAGGCAAATGATAGTT+AGG - chr8_4:31961846-31961865 None:intergenic 30.0%
TAAGCTAAAACAAACCAGAT+GGG - chr8_4:31962498-31962517 None:intergenic 30.0%
ATAAGCTAAAACAAACCAGA+TGG - chr8_4:31962499-31962518 None:intergenic 30.0%
TATACACACATATACGATGA+AGG - chr8_4:31962611-31962630 None:intergenic 30.0%
ACATCTTGAATTCATCTCTA+GGG + chr8_4:31962878-31962897 Msa1323540:intron 30.0%
AGAGAGATACATACATTCAT+CGG - chr8_4:31962915-31962934 None:intergenic 30.0%
! AGGTCAATCATAACTCTTTT+AGG - chr8_4:31963162-31963181 None:intergenic 30.0%
TTCATATAAATAAAAGGGGG+GGG + chr8_4:31963217-31963236 Msa1323540:intron 30.0%
! TGTATTCCTGATTTTATTCG+GGG + chr8_4:31963674-31963693 Msa1323540:intron 30.0%
!!! GATATTTTTAGGGACCATTA+TGG + chr8_4:31963698-31963717 Msa1323540:intron 30.0%
AAAAGTTAGGTAACCCATAA+TGG - chr8_4:31963715-31963734 None:intergenic 30.0%
AGAATGGTGAAATTGGTATT+GGG + chr8_4:31964493-31964512 Msa1323540:CDS 30.0%
!!! TTTTGACTTGATGATAGTTG+AGG - chr8_4:31964564-31964583 None:intergenic 30.0%
TCAAGTCAAAACATTCAACT+TGG + chr8_4:31964573-31964592 Msa1323540:CDS 30.0%
! CACTAATACACATCTTTTGT+AGG + chr8_4:31964775-31964794 Msa1323540:intron 30.0%
TATAGGTATGGTACAATAGT+TGG + chr8_4:31965208-31965227 Msa1323540:intron 30.0%
ATGAAGATATTGATCCCATT+AGG + chr8_4:31965233-31965252 Msa1323540:CDS 30.0%
TAAACCTGAATATCACAAAG+TGG + chr8_4:31965678-31965697 Msa1323540:CDS 30.0%
ATATCCACTTTGTGATATTC+AGG - chr8_4:31965685-31965704 None:intergenic 30.0%
TGAATATCACAAAGTGGATA+TGG + chr8_4:31965684-31965703 Msa1323540:CDS 30.0%
AGTTGTGGGTGTTCAATTAA+AGG + chr8_4:31961878-31961897 Msa1323540:CDS 35.0%
TACATTATTTCCATTGCTCG+AGG + chr8_4:31962024-31962043 Msa1323540:CDS 35.0%
AAATAACTAACCTCGAGCAA+TGG - chr8_4:31962037-31962056 None:intergenic 35.0%
GCAACAAGAATATGCATTAG+AGG + chr8_4:31962352-31962371 Msa1323540:intron 35.0%
TAGTAAGTTGCTCACTTCAA+TGG + chr8_4:31962415-31962434 Msa1323540:CDS 35.0%
TCAATGGAAACAAGTACACA+TGG + chr8_4:31962431-31962450 Msa1323540:CDS 35.0%
AAGCTAAAACAAACCAGATG+GGG - chr8_4:31962497-31962516 None:intergenic 35.0%
GACATCTTGAATTCATCTCT+AGG + chr8_4:31962877-31962896 Msa1323540:intron 35.0%
TGCATGACGAGTAGTTATAT+AGG - chr8_4:31963182-31963201 None:intergenic 35.0%
TCATATAAATAAAAGGGGGG+GGG + chr8_4:31963218-31963237 Msa1323540:intron 35.0%
TTTAAAGGCTGAGATTTCAC+TGG - chr8_4:31963312-31963331 None:intergenic 35.0%
AGGAGAGATAAGACATTCAA+TGG + chr8_4:31963376-31963395 Msa1323540:intron 35.0%
AAAACTGGAGAAAAACACAC+TGG + chr8_4:31963418-31963437 Msa1323540:intron 35.0%
CTAATGTTGTCCAATGTCTA+CGG + chr8_4:31963498-31963517 Msa1323540:intron 35.0%
TAATGTTGTCCAATGTCTAC+GGG + chr8_4:31963499-31963518 Msa1323540:intron 35.0%
! TTTTAAACTCCCGTAGACAT+TGG - chr8_4:31963511-31963530 None:intergenic 35.0%
ATCTTTACACTGTTCAGACA+CGG + chr8_4:31963640-31963659 Msa1323540:intron 35.0%
! GTATTCCTGATTTTATTCGG+GGG + chr8_4:31963675-31963694 Msa1323540:intron 35.0%
! TATTCCTGATTTTATTCGGG+GGG + chr8_4:31963676-31963695 Msa1323540:intron 35.0%
! TTATTCGGGGGGATATTTTT+AGG + chr8_4:31963687-31963706 Msa1323540:intron 35.0%
!! TATTCGGGGGGATATTTTTA+GGG + chr8_4:31963688-31963707 Msa1323540:intron 35.0%
TTTCTTCTGAATCAAGAGTG+AGG - chr8_4:31963934-31963953 None:intergenic 35.0%
AAGCATAAAACTGGGAGAAT+GGG - chr8_4:31964091-31964110 None:intergenic 35.0%
AAAGCATAAAACTGGGAGAA+TGG - chr8_4:31964092-31964111 None:intergenic 35.0%
AAATGCATTTCTGAATCCCA+TGG - chr8_4:31964347-31964366 None:intergenic 35.0%
GAGAATGGTGAAATTGGTAT+TGG + chr8_4:31964492-31964511 Msa1323540:CDS 35.0%
! GTGAAATTGGTATTGGGATT+CGG + chr8_4:31964499-31964518 Msa1323540:CDS 35.0%
! GAGGCAATTTTGTGCATATA+TGG - chr8_4:31964545-31964564 None:intergenic 35.0%
AAACATTCAACTTGGAGCAT+TGG + chr8_4:31964581-31964600 Msa1323540:CDS 35.0%
AACTTCCAATAGAAACAGCA+TGG - chr8_4:31964617-31964636 None:intergenic 35.0%
ATCATTTGGTATCTCACCAA+GGG - chr8_4:31964659-31964678 None:intergenic 35.0%
AATCATTTGGTATCTCACCA+AGG - chr8_4:31964660-31964679 None:intergenic 35.0%
! GACTCAGCATAAGTTTTCAA+AGG - chr8_4:31964825-31964844 None:intergenic 35.0%
AACTGAGTAGTCTTTCTCAA+TGG - chr8_4:31964847-31964866 None:intergenic 35.0%
ATTGAGAAAGACTACTCAGT+TGG + chr8_4:31964846-31964865 Msa1323540:CDS 35.0%
TGACATTATGATCACCTTCT+TGG - chr8_4:31964909-31964928 None:intergenic 35.0%
AAGATATTGATCCCATTAGG+TGG + chr8_4:31965236-31965255 Msa1323540:CDS 35.0%
TTCAGAATGGAGATGTATCA+AGG + chr8_4:31965264-31965283 Msa1323540:CDS 35.0%
ATCTCCCAAGATTATGTTGA+AGG + chr8_4:31965459-31965478 Msa1323540:CDS 35.0%
TCTCCCAAGATTATGTTGAA+GGG + chr8_4:31965460-31965479 Msa1323540:CDS 35.0%
ATGCCCTTCAACATAATCTT+GGG - chr8_4:31965466-31965485 None:intergenic 35.0%
AATGCCCTTCAACATAATCT+TGG - chr8_4:31965467-31965486 None:intergenic 35.0%
ATGGAAACAAGTACACATGG+TGG + chr8_4:31962434-31962453 Msa1323540:CDS 40.0%
! CATCTATCTGCATGTTGCTT+TGG - chr8_4:31962470-31962489 None:intergenic 40.0%
AGCTAAAACAAACCAGATGG+GGG - chr8_4:31962496-31962515 None:intergenic 40.0%
! ATCTTGCATTGGTGGTTGAA+GGG - chr8_4:31963035-31963054 None:intergenic 40.0%
AGGACATGCATGGAATTGAA+TGG + chr8_4:31963065-31963084 Msa1323540:CDS 40.0%
CATATAAATAAAAGGGGGGG+GGG + chr8_4:31963219-31963238 Msa1323540:intron 40.0%
ATATAAATAAAAGGGGGGGG+GGG + chr8_4:31963220-31963239 Msa1323540:intron 40.0%
GATTCTACACTGCAGAAAAC+TGG + chr8_4:31963403-31963422 Msa1323540:intron 40.0%
! AGAGAATCCTTTCCCGTTTT+GGG + chr8_4:31963441-31963460 Msa1323540:intron 40.0%
GTGTCTGAACAGTGTAAAGA+TGG - chr8_4:31963641-31963660 None:intergenic 40.0%
ATATCCCCCCGAATAAAATC+AGG - chr8_4:31963683-31963702 None:intergenic 40.0%
!! CTTCTTTTGAGGGTTCGTTT+TGG + chr8_4:31963762-31963781 Msa1323540:intron 40.0%
! AGAGGATTTGAGTTCCTTAG+AGG + chr8_4:31963867-31963886 Msa1323540:intron 40.0%
! TTTGAGTTCCTTAGAGGTGA+CGG + chr8_4:31963873-31963892 Msa1323540:intron 40.0%
AGAGCACACTTGCTTACTAA+TGG + chr8_4:31964224-31964243 Msa1323540:CDS 40.0%
CACACTTGCTTACTAATGGT+TGG + chr8_4:31964228-31964247 Msa1323540:CDS 40.0%
! AACTCTAAAAGCCTTCTTCC+TGG + chr8_4:31964263-31964282 Msa1323540:CDS 40.0%
ACAAAAACGCATGAATCTCC+AGG - chr8_4:31964284-31964303 None:intergenic 40.0%
! GAGATTCATGCGTTTTTGTC+AGG + chr8_4:31964285-31964304 Msa1323540:CDS 40.0%
TGTTATTGTAGGGGAGAGAA+TGG + chr8_4:31964477-31964496 Msa1323540:intron 40.0%
!! GTTGTCCATGCTGTTTCTAT+TGG + chr8_4:31964609-31964628 Msa1323540:CDS 40.0%
AGAAAGACTACTCAGTTGGA+AGG + chr8_4:31964850-31964869 Msa1323540:CDS 40.0%
! CAGATGTTGTCTGAAGTTGA+AGG + chr8_4:31964879-31964898 Msa1323540:CDS 40.0%
ATACATCTCCATTCTGAACC+AGG - chr8_4:31965262-31965281 None:intergenic 40.0%
GGACAAACCCTCTCAATATT+TGG - chr8_4:31965418-31965437 None:intergenic 40.0%
ATATTGAGAGGGTTTGTCCA+TGG + chr8_4:31965419-31965438 Msa1323540:CDS 40.0%
ATAATCTTGGGAGATCCCAA+AGG - chr8_4:31965454-31965473 None:intergenic 40.0%
TCACAAAGTGGATATGGACT+TGG + chr8_4:31965690-31965709 Msa1323540:CDS 40.0%
AAAGTGGATATGGACTTGGA+AGG + chr8_4:31965694-31965713 Msa1323540:CDS 40.0%
GAGGACAATCATGCACTTCA+TGG + chr8_4:31962371-31962390 Msa1323540:CDS 45.0%
! GATCTTGCATTGGTGGTTGA+AGG - chr8_4:31963036-31963055 None:intergenic 45.0%
ACCACCAATGCAAGATCTTG+TGG + chr8_4:31963039-31963058 Msa1323540:CDS 45.0%
TTCGCCACAAGATCTTGCAT+TGG - chr8_4:31963046-31963065 None:intergenic 45.0%
AATGCAAGATCTTGTGGCGA+AGG + chr8_4:31963045-31963064 Msa1323540:CDS 45.0%
TATAAATAAAAGGGGGGGGG+GGG + chr8_4:31963221-31963240 Msa1323540:intron 45.0%
TTCACTGGACTCTACAGTGA+CGG - chr8_4:31963297-31963316 None:intergenic 45.0%
! GAGAGAATCCTTTCCCGTTT+TGG + chr8_4:31963440-31963459 Msa1323540:intron 45.0%
! GAGAATCCTTTCCCGTTTTG+GGG + chr8_4:31963442-31963461 Msa1323540:intron 45.0%
CATACCATCAACCCCAAAAC+GGG - chr8_4:31963456-31963475 None:intergenic 45.0%
CCATACCATCAACCCCAAAA+CGG - chr8_4:31963457-31963476 None:intergenic 45.0%
!! TTGGGGTTGATGGTATGGTT+TGG + chr8_4:31963459-31963478 Msa1323540:intron 45.0%
TACACTGTTCAGACACGGTT+TGG + chr8_4:31963645-31963664 Msa1323540:intron 45.0%
AGGGGAGAGAATGGTGAAAT+TGG + chr8_4:31964486-31964505 Msa1323540:intron 45.0%
TATCTCACCAAGGGTGGTAT+TGG - chr8_4:31964650-31964669 None:intergenic 45.0%
ATTTGGTATCTCACCAAGGG+TGG - chr8_4:31964656-31964675 None:intergenic 45.0%
AAGACTACTCAGTTGGAAGG+AGG + chr8_4:31964853-31964872 Msa1323540:CDS 45.0%
AGACTACTCAGTTGGAAGGA+GGG + chr8_4:31964854-31964873 Msa1323540:CDS 45.0%
AAGTTGAAGGACGTCCAAGA+AGG + chr8_4:31964892-31964911 Msa1323540:CDS 45.0%
ACATCTCCTCTTAGGTGCAA+TGG + chr8_4:31965383-31965402 Msa1323540:intron 45.0%
CATCTCCTCTTAGGTGCAAT+GGG + chr8_4:31965384-31965403 Msa1323540:intron 45.0%
GAAATCCCATTGCACCTAAG+AGG - chr8_4:31965392-31965411 None:intergenic 45.0%
GAAGGTCAACAATACAGTGC+TGG + chr8_4:31965712-31965731 Msa1323540:CDS 45.0%
!! AAAAAAAAATGAATATAATT+TGG + chr8_4:31962309-31962328 Msa1323540:intron 5.0%
!! AAAAAAAATGAATATAATTT+GGG + chr8_4:31962310-31962329 Msa1323540:intron 5.0%
!!! TTTTCTTTAAAAAAATTTAA+TGG - chr8_4:31964031-31964050 None:intergenic 5.0%
AGATAGATGCTTCCCCCATC+TGG + chr8_4:31962481-31962500 Msa1323540:CDS 50.0%
GCCACAAGATCTTGCATTGG+TGG - chr8_4:31963043-31963062 None:intergenic 50.0%
ATAAATAAAAGGGGGGGGGG+GGG + chr8_4:31963222-31963241 Msa1323540:intron 50.0%
CATCAACCCCAAAACGGGAA+AGG - chr8_4:31963451-31963470 None:intergenic 50.0%
!!! CTTTCCCGTTTTGGGGTTGA+TGG + chr8_4:31963449-31963468 Msa1323540:intron 50.0%
!!! CCGTTTTGGGGTTGATGGTA+TGG + chr8_4:31963454-31963473 Msa1323540:intron 50.0%
! ACTGTTCAGACACGGTTTGG+CGG + chr8_4:31963648-31963667 Msa1323540:intron 50.0%
!! ATATAATGGGTGAGCGGCAG+AGG + chr8_4:31963849-31963868 Msa1323540:intron 50.0%
! TTAGAGGTGACGGCCTAGTT+GGG + chr8_4:31963883-31963902 Msa1323540:intron 50.0%
GGAAGACATCAAAGAGCCGT+TGG - chr8_4:31963913-31963932 None:intergenic 50.0%
CGCATGAATCTCCAGGAAGA+AGG - chr8_4:31964277-31964296 None:intergenic 50.0%
TCCATGTCCAATACCACCCT+TGG + chr8_4:31964640-31964659 Msa1323540:intron 50.0%
! ACCAAGGGTGGTATTGGACA+TGG - chr8_4:31964644-31964663 None:intergenic 50.0%
ATTGATCCCATTAGGTGGCC+TGG + chr8_4:31965241-31965260 Msa1323540:CDS 50.0%
TCTGAACCAGGCCACCTAAT+GGG - chr8_4:31965250-31965269 None:intergenic 50.0%
TTCTGAACCAGGCCACCTAA+TGG - chr8_4:31965251-31965270 None:intergenic 50.0%
TTAGGTGGCCTGGTTCAGAA+TGG + chr8_4:31965251-31965270 Msa1323540:CDS 50.0%
TTGAGAGGGTTTGTCCATGG+TGG + chr8_4:31965422-31965441 Msa1323540:CDS 50.0%
!! TCCATGGTGGATTGAGCCTT+TGG + chr8_4:31965435-31965454 Msa1323540:CDS 50.0%
!! CCATGGTGGATTGAGCCTTT+GGG + chr8_4:31965436-31965455 Msa1323540:CDS 50.0%
CTTGTGGCGAAGGACATGCA+TGG + chr8_4:31963055-31963074 Msa1323540:CDS 55.0%
TAAATAAAAGGGGGGGGGGG+GGG + chr8_4:31963223-31963242 Msa1323540:intron 55.0%
CAACTAGGCCGTCACCTCTA+AGG - chr8_4:31963884-31963903 None:intergenic 55.0%
! CTTAGAGGTGACGGCCTAGT+TGG + chr8_4:31963882-31963901 Msa1323540:intron 55.0%
GGCCTAGTTGGGATGTCCAA+CGG + chr8_4:31963894-31963913 Msa1323540:intron 55.0%
AGCCGTTGGACATCCCAACT+AGG - chr8_4:31963899-31963918 None:intergenic 55.0%
CCCAAAGGCTCAATCCACCA+TGG - chr8_4:31965439-31965458 None:intergenic 55.0%
AAATAAAAGGGGGGGGGGGG+GGG + chr8_4:31963224-31963243 Msa1323540:intron 60.0%
GGACTCTACAGTGACGGCAG+AGG - chr8_4:31963291-31963310 None:intergenic 60.0%
AATAAAAGGGGGGGGGGGGG+GGG + chr8_4:31963225-31963244 Msa1323540:intron 65.0%
ATAAAAGGGGGGGGGGGGGG+GGG + chr8_4:31963226-31963245 Msa1323540:intron 70.0%
!!! GGGGGGGTTTTGGGGGGGAA+TGG + chr8_4:31963263-31963282 Msa1323540:intron 70.0%
TAAAAGGGGGGGGGGGGGGG+GGG + chr8_4:31963227-31963246 Msa1323540:intron 75.0%
! AAAAGGGGGGGGGGGGGGGG+GGG + chr8_4:31963228-31963247 Msa1323540:intron 80.0%
!! GGGGGGGGGGGGGGGGTTTT+GGG + chr8_4:31963254-31963273 Msa1323540:intron 80.0%
!! GGGGGGGGGGGGGGGTTTTG+GGG + chr8_4:31963255-31963274 Msa1323540:intron 80.0%
!!! GGGGGGGGGGGGGGTTTTGG+GGG + chr8_4:31963256-31963275 Msa1323540:intron 80.0%
!!! GGGGGGGGGGGGGTTTTGGG+GGG + chr8_4:31963257-31963276 Msa1323540:intron 80.0%
!!! GGGGGGGGGGGGTTTTGGGG+GGG + chr8_4:31963258-31963277 Msa1323540:intron 80.0%
! AAAGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963229-31963248 Msa1323540:intron 85.0%
!! GGGGGGGGGGGGGGGGGTTT+TGG + chr8_4:31963253-31963272 Msa1323540:intron 85.0%
! AAGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963230-31963249 Msa1323540:intron 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + chr8_4:31963231-31963250 Msa1323540:intron 95.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 31961834 31965828 31961834 ID=Msa1323540;Name=Msa1323540
chr8_4 mRNA 31961834 31965828 31961834 ID=Msa1323540-mRNA-1;Parent=Msa1323540;Name=Msa1323540-mRNA-1;_AED=0.17;_eAED=0.18;_QI=0|0|0|1|0.88|0.9|10|0|366
chr8_4 exon 31961834 31961899 31961834 ID=Msa1323540-mRNA-1:exon:10375;Parent=Msa1323540-mRNA-1
chr8_4 exon 31961989 31962045 31961989 ID=Msa1323540-mRNA-1:exon:10376;Parent=Msa1323540-mRNA-1
chr8_4 exon 31962353 31962502 31962353 ID=Msa1323540-mRNA-1:exon:10377;Parent=Msa1323540-mRNA-1
chr8_4 exon 31963025 31963109 31963025 ID=Msa1323540-mRNA-1:exon:10378;Parent=Msa1323540-mRNA-1
chr8_4 exon 31964216 31964306 31964216 ID=Msa1323540-mRNA-1:exon:10379;Parent=Msa1323540-mRNA-1
chr8_4 exon 31964488 31964637 31964488 ID=Msa1323540-mRNA-1:exon:10380;Parent=Msa1323540-mRNA-1
chr8_4 exon 31964797 31964913 31964797 ID=Msa1323540-mRNA-1:exon:10381;Parent=Msa1323540-mRNA-1
chr8_4 exon 31965213 31965285 31965213 ID=Msa1323540-mRNA-1:exon:10382;Parent=Msa1323540-mRNA-1
chr8_4 exon 31965397 31965538 31965397 ID=Msa1323540-mRNA-1:exon:10383;Parent=Msa1323540-mRNA-1
chr8_4 exon 31965659 31965828 31965659 ID=Msa1323540-mRNA-1:exon:10384;Parent=Msa1323540-mRNA-1
chr8_4 CDS 31961834 31961899 31961834 ID=Msa1323540-mRNA-1:cds;Parent=Msa1323540-mRNA-1
chr8_4 CDS 31961989 31962045 31961989 ID=Msa1323540-mRNA-1:cds;Parent=Msa1323540-mRNA-1
chr8_4 CDS 31962353 31962502 31962353 ID=Msa1323540-mRNA-1:cds;Parent=Msa1323540-mRNA-1
chr8_4 CDS 31963025 31963109 31963025 ID=Msa1323540-mRNA-1:cds;Parent=Msa1323540-mRNA-1
chr8_4 CDS 31964216 31964306 31964216 ID=Msa1323540-mRNA-1:cds;Parent=Msa1323540-mRNA-1
chr8_4 CDS 31964488 31964637 31964488 ID=Msa1323540-mRNA-1:cds;Parent=Msa1323540-mRNA-1
chr8_4 CDS 31964797 31964913 31964797 ID=Msa1323540-mRNA-1:cds;Parent=Msa1323540-mRNA-1
chr8_4 CDS 31965213 31965285 31965213 ID=Msa1323540-mRNA-1:cds;Parent=Msa1323540-mRNA-1
chr8_4 CDS 31965397 31965538 31965397 ID=Msa1323540-mRNA-1:cds;Parent=Msa1323540-mRNA-1
chr8_4 CDS 31965659 31965828 31965659 ID=Msa1323540-mRNA-1:cds;Parent=Msa1323540-mRNA-1
Gene Sequence

>Msa1323540

ATGGAAATTCCTAACTATCATTTGCCTTCTAAAATTTTATGCGTAGTTGTGGGTGTTCAATTAAAGGTAAAAGTTGACACAGATGAGATTTTTTCTCTAGTTACATTATTTCCATTGCTCGAGCAACAAGAATATGCATTAGAGGACAATCATGCACTTCATGGTCCTAATGAAATCTACTCTTTTAGTAAGTTGCTCACTTCAATGGAAACAAGTACACATGGTGGACTTTATATTCCAAAGCAACATGCAGATAGATGCTTCCCCCATCTGGATATGACCCTTCAACCACCAATGCAAGATCTTGTGGCGAAGGACATGCATGGAATTGAATGGAATTTTCGACATATTTATCGTGATGATGAGAGAGCACACTTGCTTACTAATGGTTGGAGCACATTTGTCAACTCTAAAAGCCTTCTTCCTGGAGATTCATGCGTTTTTGTCAGGGGAGAGAATGGTGAAATTGGTATTGGGATTCGGCGAGCAATGAATCAACATAGCCATATATGCACAAAATTGCCTCAACTATCATCAAGTCAAAACATTCAACTTGGAGCATTGGCTGCTGTTGTCCATGCTGTTTCTATTGGAAGTTTGGTTACTCCCTTTGAATTTATGATTCCTTTGAAAACTTATGCTGAGTCCATTGAGAAAGACTACTCAGTTGGAAGGAGGGTACAGATGTTGTCTGAAGTTGAAGGACGTCCAAGAAGGTATGGTACAATAGTTGGTAATGAAGATATTGATCCCATTAGGTGGCCTGGTTCAGAATGGAGATGTATCAAGGTGCAATGGGATTTCATACCAAATATTGAGAGGGTTTGTCCATGGTGGATTGAGCCTTTGGGATCTCCCAAGATTATGTTGAAGGGCATTCCAATTCTCCCTTTATCAAATAAAACAGATATACTTAACTTTTTTAACGAGGATATAGCTGGGAGTTCTTCTAAACCTGAATATCACAAAGTGGATATGGACTTGGAAGGTCAACAATACAGTGCTGGAAATGATGAAAAGTCAAACTTTTTCATCATTGCTTTCTTTATATGTCTTTGCTTTTTTACATTTGTAATTTTTCTCTTTCGTCCTCTTCTATAA
Protein sequence

>Msa1323540

MEIPNYHLPSKILCVVVGVQLKVKVDTDEIFSLVTLFPLLEQQEYALEDNHALHGPNEIYSFSKLLTSMETSTHGGLYIPKQHADRCFPHLDMTLQPPMQDLVAKDMHGIEWNFRHIYRDDERAHLLTNGWSTFVNSKSLLPGDSCVFVRGENGEIGIGIRRAMNQHSHICTKLPQLSSSQNIQLGALAAVVHAVSIGSLVTPFEFMIPLKTYAESIEKDYSVGRRVQMLSEVEGRPRRYGTIVGNEDIDPIRWPGSEWRCIKVQWDFIPNIERVCPWWIEPLGSPKIMLKGIPILPLSNKTDILNFFNEDIAGSSSKPEYHKVDMDLEGQQYSAGNDEKSNFFIIAFFICLCFFTFVIFLFRPLL*