AlfalfaGEDB | Msa1324110

M. sativa cultivar zhongmu-4 / Msa1324110

KEGG: -
GO: -
PFAM: PF04770.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324110	A0A072TNS1	59.783	92	27	2	31	112	6	97	3.14e-28	112
Msa1324110	A0A072TNS1	65.432	81	21	1	112	185	17	97	6.06e-29	114

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TFs/TRs:

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Gene ID	Type	Classification
Msa1324110	TF	zf-HD

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324110	MtrunA17_Chr8g0357721	65.432	81	21	1	112	185	17	97	1.17e-32	114
Msa1324110	MtrunA17_Chr8g0357721	59.783	92	27	2	31	112	6	97	6.05e-32	112
Msa1324110	MtrunA17_Chr8g0357741	89.474	38	3	1	1	38	55	91	1.39e-14	66.2
Msa1324110	MtrunA17_Chr2g0315941	73.684	38	10	0	1	38	225	262	7.70e-12	62.4
Msa1324110	MtrunA17_Chr2g0315941	72.727	33	9	0	41	73	82	114	8.90e-11	59.3
Msa1324110	MtrunA17_Chr2g0315941	68.571	35	11	0	112	146	80	114	9.53e-11	59.3
Msa1324110	MtrunA17_Chr8g0367691	75.758	33	8	0	41	73	83	115	1.95e-11	61.2
Msa1324110	MtrunA17_Chr8g0367691	71.429	35	10	0	112	146	81	115	2.11e-11	61.2
Msa1324110	MtrunA17_Chr8g0367691	68.421	38	12	0	1	38	225	262	4.56e-11	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 33 sgRNAs with CRISPR-Local

Find 730 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTTGCTATGACATTAGGT+TGG	0.578827	8_4:+33536314	None:intergenic
AGAAATGTTGAGCCTATCAA+TGG	0.616121	8_4:+33541145	Msa1324110:CDS
AGAAATGTTGAGCCTATCAA+TGG	0.616121	8_4:+33547965	Msa1324110:CDS
AGTGGTACCTTTGGCTCCAG+CGG	0.579674	8_4:-33541011	None:intergenic
ATCAATGGTGATGGTCGTGA+TGG	0.625248	8_4:+33541160	Msa1324110:CDS
ATCAATGGTGATGGTCGTGA+TGG	0.625248	8_4:+33547980	Msa1324110:CDS
ATTTAATTTGCTATGACATT+AGG	0.302294	8_4:+33536310	None:intergenic
CTACTCATGTCATACCTTCA+AGG	0.449905	8_4:+33541095	Msa1324110:CDS
CTACTCTTGTCATACCTTCA+AGG	0.449905	8_4:+33547915	Msa1324110:CDS
CTTTCAGGCTACTCTCTTGA+TGG	0.346320	8_4:+33540971	Msa1324110:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAACAATAAGCATAACCG+TGG	+	chr8_4:33536421-33536440	Msa1324110:intron	30.0%
AGGAAAACATTGAACTGTTA+TGG	+	chr8_4:33536668-33536687	Msa1324110:intron	30.0%
TAATCTCTATGTAACGTTTG+TGG	-	chr8_4:33536884-33536903	None:intergenic	30.0%
CAGCAAATCTTGTATGATAA+TGG	-	chr8_4:33537100-33537119	None:intergenic	30.0%
ATTTGTATAACGCTTATGAC+AGG	-	chr8_4:33537219-33537238	None:intergenic	30.0%
GTACAACTGATAAACAGTAA+AGG	-	chr8_4:33537262-33537281	None:intergenic	30.0%
TATCTTTGATGTTACACTCT+TGG	+	chr8_4:33537325-33537344	Msa1324110:intron	30.0%
CGATAAGAAATCACACAAAA+AGG	-	chr8_4:33537441-33537460	None:intergenic	30.0%
GTATAAACTAACTTTCAGGA+AGG	-	chr8_4:33537728-33537747	None:intergenic	30.0%
TGTTAAGTCAGAAGTTCAAA+AGG	+	chr8_4:33537888-33537907	Msa1324110:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	33536322	33548021	33536322	ID=Msa1324110;Name=Msa1324110
chr8_4	mRNA	33536322	33548021	33536322	ID=Msa1324110-mRNA-1;Parent=Msa1324110;Name=Msa1324110-mRNA-1;_AED=0.26;_eAED=0.27;_QI=0\|0\|0\|1\|0\|0\|3\|0\|186
chr8_4	exon	33536322	33536439	33536322	ID=Msa1324110-mRNA-1:exon:10848;Parent=Msa1324110-mRNA-1
chr8_4	exon	33540978	33541196	33540978	ID=Msa1324110-mRNA-1:exon:10849;Parent=Msa1324110-mRNA-1
chr8_4	exon	33547798	33548021	33547798	ID=Msa1324110-mRNA-1:exon:10850;Parent=Msa1324110-mRNA-1
chr8_4	CDS	33536322	33536439	33536322	ID=Msa1324110-mRNA-1:cds;Parent=Msa1324110-mRNA-1
chr8_4	CDS	33540978	33541196	33540978	ID=Msa1324110-mRNA-1:cds;Parent=Msa1324110-mRNA-1
chr8_4	CDS	33547798	33548021	33547798	ID=Msa1324110-mRNA-1:cds;Parent=Msa1324110-mRNA-1

Gene Sequence

>Msa1324110

ATGACATTAGGTTGGAAGATTAAAAAGAATGATGAGAATGTTGTTGAGGAGTTTTGTAACGAGATAGCGGTGAAGCATCGTGTTTTTAAGGTTTTGATGTATAACAATAAGCATAACCGCTACTCTCTTGATGGTTGTCGTGAGTTTTTACCCGCTGGAGCCAAAGGTACCACTGACTTTTTTAAATGTGCTGCCTGTGAATGTCACAGAAACTTCTATTGTATTGTACCTGCAACTACTCATGTCATACCTTCAAGGGAGGATTTTGTAGAATATGTTTATGTTAGAAATGTTGAGCCTATCAATGGTGATGGTCGTGATGGTGATGGAGAAGGACGCTACTCTCTTGATGGTTGTCGTGAGTTTTTACCCGCTGGAGCCAAAGGTACTACCGACTTTTTTAAATGTGCTTCCTGTGAATGTCACAGAAACTTCTATTGTATTGTACCTGCAACTACTCTTGTCATACCTTCAAGGGAGGATTTTGTAGAATATGTTTATGTTAGAAATGTTGAGCCTATCAATGGTGATGGTCGTGATGGTGATGGAGAAGGACGTTGA

Protein sequence

>Msa1324110

MTLGWKIKKNDENVVEEFCNEIAVKHRVFKVLMYNNKHNRYSLDGCREFLPAGAKGTTDFFKCAACECHRNFYCIVPATTHVIPSREDFVEYVYVRNVEPINGDGRDGDGEGRYSLDGCREFLPAGAKGTTDFFKCASCECHRNFYCIVPATTLVIPSREDFVEYVYVRNVEPINGDGRDGDGEGR*