AlfalfaGEDB | Msa1324300

M. sativa cultivar zhongmu-4 / Msa1324300

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324300	XP_039684666.1	96.961	362	11	0	1	362	438	799	0.0	734

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324300	sp\|Q9SXB8\|Y1133_ARATH	56.461	356	147	2	1	353	490	840	4.80e-137	413

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324300	G7L990	96.961	362	11	0	1	362	435	796	0.0	733

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1324300	MtrunA17_Chr8g0357881	92.222	360	25	1	3	362	443	799	684
Msa1324300	MtrunA17_Chr8g0357961	89.197	361	36	1	1	361	449	806	676
Msa1324300	MtrunA17_Chr8g0357991	88.611	360	38	1	2	361	451	807	670
Msa1324300	MtrunA17_Chr8g0358071	88.056	360	42	1	3	362	440	798	663
Msa1324300	MtrunA17_Chr8g0357981	88.089	361	42	1	2	362	268	627	662
Msa1324300	MtrunA17_Chr8g0358101	88.418	354	40	1	9	362	434	786	657
Msa1324300	MtrunA17_Chr8g0358081	87.853	354	42	1	9	362	431	783	654
Msa1324300	MtrunA17_Chr8g0358141	83.646	373	48	2	2	362	29	400	642
Msa1324300	MtrunA17_Chr8g0358031	88.301	359	42	0	4	362	444	802	642
Msa1324300	MtrunA17_Chr8g0358121	88.701	354	40	0	9	362	432	785	639

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324300	AT1G11330.2	56.461	356	147	2	1	353	490	840	4.88e-138	413
Msa1324300	AT1G11330.1	56.461	356	147	2	1	353	488	838	5.87e-138	413
Msa1324300	AT3G16030.2	61.039	308	117	3	23	327	387	694	1.32e-132	396
Msa1324300	AT1G67520.5	59.416	308	122	3	23	327	242	549	1.56e-132	391
Msa1324300	AT1G67520.8	59.416	308	122	3	23	327	271	578	3.31e-132	391
Msa1324300	AT1G67520.7	59.416	308	122	3	23	327	271	578	3.31e-132	391
Msa1324300	AT3G16030.1	61.039	308	117	3	23	327	510	817	9.85e-132	397
Msa1324300	AT3G16030.6	61.039	308	117	3	23	327	531	838	2.50e-131	397
Msa1324300	AT1G67520.4	59.416	308	122	3	23	327	436	743	3.48e-130	391
Msa1324300	AT1G67520.3	59.416	308	122	3	23	327	479	786	7.24e-130	391

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Find 67 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTTTCAAAGACATC+TGG	0.440474	8_4:-34256433	Msa1324300:CDS
AAACCTAAAATTTCTGATTT+TGG	0.107477	8_4:-34255760	Msa1324300:CDS
AAATGCTGGTCTTCTTGGTA+AGG	0.489595	8_4:+34255177	None:intergenic
AAGCGCTTGAACATAATAGA+AGG	0.456054	8_4:-34255880	Msa1324300:CDS
AAGGGGAAACAACTTCTAAA+GGG	0.491542	8_4:-34255132	Msa1324300:CDS
AAGTAGAAGGGAAAATATAA+TGG	0.446063	8_4:-34255063	Msa1324300:exon
AAGTCTGATGTCTATAGCTT+TGG	0.482786	8_4:-34255553	Msa1324300:CDS
AAGTTAGGGCAGGGAGGTTA+TGG	0.323985	8_4:-34256643	Msa1324300:CDS
AATCATTCATCGAGACTTGA+AGG	0.409754	8_4:-34255812	Msa1324300:CDS
AATCCGTAGTAAATACCAAC+AGG	0.489378	8_4:-34255711	Msa1324300:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGACTTTCAAAGACATC+TGG	-	chr8_4:34255270-34255289	Msa1324300:CDS	30.0%
ATATATGCCAAACAAAAGCT+TGG	-	chr8_4:34255410-34255429	Msa1324300:intron	30.0%
AGCTTGGATTTCTATCTATT+TGG	-	chr8_4:34255426-34255445	Msa1324300:intron	30.0%
ACACGTCATAAAATACACTT+TGG	+	chr8_4:34255568-34255587	None:intergenic	30.0%
TTTATGACGTGTTAGATCTA+CGG	-	chr8_4:34255576-34255595	Msa1324300:CDS	30.0%
TACGGTGTTTCGAAAATTTA+GGG	-	chr8_4:34255594-34255613	Msa1324300:CDS	30.0%
TCATGTTTCATGTAACTCAA+TGG	-	chr8_4:34255764-34255783	Msa1324300:CDS	30.0%
AATCCTGTTGGTATTTACTA+CGG	+	chr8_4:34255998-34256017	None:intergenic	30.0%
TAAATACCAACAGGATTGTT+GGG	-	chr8_4:34256001-34256020	Msa1324300:intron	30.0%
AGAAATTGCAGTCATAGAAT+AGG	+	chr8_4:34256610-34256629	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	34254886	34256839	34254886	ID=Msa1324300;Name=Msa1324300
chr8_4	mRNA	34254886	34256839	34254886	ID=Msa1324300-mRNA-1;Parent=Msa1324300;Name=Msa1324300-mRNA-1;_AED=0.20;_eAED=0.20;_QI=42\|1\|1\|1\|0.5\|0.8\|5\|180\|362
chr8_4	exon	34254886	34255386	34254886	ID=Msa1324300-mRNA-1:exon:10937;Parent=Msa1324300-mRNA-1
chr8_4	exon	34255471	34255621	34255471	ID=Msa1324300-mRNA-1:exon:10936;Parent=Msa1324300-mRNA-1
chr8_4	exon	34255697	34255934	34255697	ID=Msa1324300-mRNA-1:exon:10935;Parent=Msa1324300-mRNA-1
chr8_4	exon	34256278	34256488	34256278	ID=Msa1324300-mRNA-1:exon:10934;Parent=Msa1324300-mRNA-1
chr8_4	exon	34256630	34256839	34256630	ID=Msa1324300-mRNA-1:exon:10933;Parent=Msa1324300-mRNA-1
chr8_4	five_prime_UTR	34256798	34256839	34256798	ID=Msa1324300-mRNA-1:five_prime_utr;Parent=Msa1324300-mRNA-1
chr8_4	CDS	34256630	34256797	34256630	ID=Msa1324300-mRNA-1:cds;Parent=Msa1324300-mRNA-1
chr8_4	CDS	34256278	34256488	34256278	ID=Msa1324300-mRNA-1:cds;Parent=Msa1324300-mRNA-1
chr8_4	CDS	34255697	34255934	34255697	ID=Msa1324300-mRNA-1:cds;Parent=Msa1324300-mRNA-1
chr8_4	CDS	34255471	34255621	34255471	ID=Msa1324300-mRNA-1:cds;Parent=Msa1324300-mRNA-1
chr8_4	CDS	34255066	34255386	34255066	ID=Msa1324300-mRNA-1:cds;Parent=Msa1324300-mRNA-1
chr8_4	three_prime_UTR	34254886	34255065	34254886	ID=Msa1324300-mRNA-1:three_prime_utr;Parent=Msa1324300-mRNA-1

Gene Sequence

>Msa1324300

ATGCAAGATTTGGCAGCTTCCCATGAAACCTTTGGTGTCAAAGATCTTGAAGATGACTTCAAGGGACATGATATAAAAGTTTTTAACTTTACATCAATATTGGAAGCAACTATGAGCTTTTCCATTGAAAACAAGTTAGGGCAGGGAGGTTATGGACCTGTTTATAAGGGAATTTTGCCAACAGGGCAAGAAATTGCTGTAAAAAGACTTTCAAAGACATCTGGACAAGGAATTGTGGAATTCAAAAATGAATTGGTACTTATATGTGAACTTCAACACACAAATCTTGTCCAACTACTTGGTTGTTGCATTCATCAAGAAGAAAGGATTCTGATTTACGAATATATGCCAAACAAAAGCTTGGATTTCTATCTATTTGATTATACAAGAAGAAAATATCTAGATTGGAAGAAGCGCTTGAACATAATAGAAGGAATATCTCAAGGATTACTCTATCTTCACAAGTACTCAAGACTCAAAATCATTCATCGAGACTTGAAGGCTAGCAACATACTTCTTGACGAGAATATGAAACCTAAAATTTCTGATTTTGGCATGGCAAGAATGTTCACACAACAAGAATCCGTAGTAAATACCAACAGGATTGTTGGGACATATGGGTACATGTCTCCAGAGTATGCCATGGAAGGGATTTGTTCTACTAAGTCTGATGTCTATAGCTTTGGTGTGCTGCTACTTGAAATTATTTGTGGAAGAAGAAACAATAGCTTCTATGATGTTGATCGCCCACTAAATCTAATCGGACATGCATGGGAGCTATGGAATGATGGTGAGTATCTACAGTTAATGGATCCAACATTAAATGACACATTTGTTCCAGATGAAGTGCAAAAGTGCATTCATGTTGGTCTCTTATGTGTAGAACAATATGCAAATAATCGACCTACAATGTTTGATGTTATATCAATGTTAACAAACAAATACGCACCGACAACCTTACCAAGAAGACCAGCATTTTATGTTACCAGAGAAATCTTCGAAGGGGAAACAACTTCTAAAGGGCTAGATACTGACACCTATTCTATGACTGCAATTTCTACATCATGTGAAGTAGAAGGGAAAATATAA

Protein sequence

>Msa1324300

MQDLAASHETFGVKDLEDDFKGHDIKVFNFTSILEATMSFSIENKLGQGGYGPVYKGILPTGQEIAVKRLSKTSGQGIVEFKNELVLICELQHTNLVQLLGCCIHQEERILIYEYMPNKSLDFYLFDYTRRKYLDWKKRLNIIEGISQGLLYLHKYSRLKIIHRDLKASNILLDENMKPKISDFGMARMFTQQESVVNTNRIVGTYGYMSPEYAMEGICSTKSDVYSFGVLLLEIICGRRNNSFYDVDRPLNLIGHAWELWNDGEYLQLMDPTLNDTFVPDEVQKCIHVGLLCVEQYANNRPTMFDVISMLTNKYAPTTLPRRPAFYVTREIFEGETTSKGLDTDTYSMTAISTSCEVEGKI*