Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324630 | sp|Q9LW83|CE101_ARATH | 39.048 | 105 | 28 | 1 | 69 | 137 | 510 | 614 | 2.62e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324630 | A0A396GK18 | 86.131 | 137 | 9 | 1 | 11 | 137 | 8 | 144 | 2.13e-76 | 242 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324630 | MtrunA17_Chr8g0358061 | 86.131 | 137 | 9 | 1 | 11 | 137 | 8 | 144 | 4.09e-80 | 242 |
| Msa1324630 | MtrunA17_Chr8g0358081 | 56.471 | 170 | 22 | 2 | 20 | 137 | 380 | 549 | 3.06e-51 | 175 |
| Msa1324630 | MtrunA17_Chr8g0358121 | 66.418 | 134 | 9 | 1 | 40 | 137 | 417 | 550 | 2.29e-49 | 169 |
| Msa1324630 | MtrunA17_Chr8g0358141 | 63.910 | 133 | 9 | 2 | 43 | 136 | 21 | 153 | 3.43e-48 | 160 |
| Msa1324630 | MtrunA17_Chr8g0357961 | 56.395 | 172 | 24 | 4 | 17 | 137 | 401 | 572 | 3.79e-48 | 166 |
| Msa1324630 | MtrunA17_Chr8g0357961 | 78.571 | 42 | 9 | 0 | 135 | 176 | 765 | 806 | 8.80e-14 | 68.6 |
| Msa1324630 | MtrunA17_Chr8g0358101 | 66.165 | 133 | 9 | 1 | 41 | 137 | 420 | 552 | 5.65e-48 | 166 |
| Msa1324630 | MtrunA17_Chr8g0357991 | 64.662 | 133 | 11 | 1 | 41 | 137 | 441 | 573 | 2.76e-47 | 164 |
| Msa1324630 | MtrunA17_Chr8g0357991 | 78.571 | 42 | 9 | 0 | 135 | 176 | 766 | 807 | 9.59e-14 | 68.6 |
| Msa1324630 | MtrunA17_Chr8g0357881 | 64.179 | 134 | 12 | 1 | 40 | 137 | 431 | 564 | 3.47e-47 | 164 |
| Msa1324630 | MtrunA17_Chr8g0357881 | 39.062 | 128 | 61 | 5 | 57 | 177 | 682 | 799 | 1.49e-12 | 65.1 |
| Msa1324630 | MtrunA17_Chr8g0358071 | 60.993 | 141 | 16 | 2 | 36 | 137 | 424 | 564 | 4.13e-47 | 163 |
| Msa1324630 | MtrunA17_Chr8g0358161 | 62.406 | 133 | 12 | 2 | 41 | 137 | 4 | 134 | 4.85e-46 | 154 |
| Msa1324630 | MtrunA17_Chr8g0358161 | 79.070 | 43 | 9 | 0 | 135 | 177 | 296 | 338 | 4.08e-14 | 68.9 |
| Msa1324630 | MtrunA17_Chr8g0358031 | 52.601 | 173 | 27 | 4 | 20 | 137 | 395 | 567 | 1.58e-45 | 159 |
| Msa1324630 | MtrunA17_Chr8g0357801 | 59.559 | 136 | 16 | 2 | 40 | 136 | 425 | 560 | 1.58e-43 | 152 |
| Msa1324630 | MtrunA17_Chr8g0357981 | 50.588 | 170 | 30 | 4 | 20 | 137 | 226 | 393 | 2.53e-40 | 143 |
| Msa1324630 | MtrunA17_Chr8g0357981 | 62.500 | 56 | 20 | 1 | 122 | 177 | 573 | 627 | 2.62e-11 | 61.2 |
| Msa1324630 | MtrunA17_Chr8g0357671 | 44.961 | 129 | 30 | 3 | 58 | 149 | 16 | 140 | 9.75e-27 | 99.4 |
| Msa1324630 | MtrunA17_Chr8g0357711 | 50.000 | 114 | 20 | 2 | 61 | 137 | 452 | 565 | 1.80e-25 | 102 |
| Msa1324630 | MtrunA17_Chr8g0357761 | 50.000 | 114 | 20 | 2 | 61 | 137 | 455 | 568 | 1.89e-25 | 102 |
| Msa1324630 | MtrunA17_Chr1g0191101 | 54.444 | 90 | 5 | 1 | 84 | 137 | 1 | 90 | 6.71e-25 | 92.8 |
| Msa1324630 | MtrunA17_Chr8g0357691 | 50.000 | 114 | 20 | 2 | 61 | 137 | 453 | 566 | 9.93e-25 | 100 |
| Msa1324630 | MtrunA17_Chr8g0357651 | 47.009 | 117 | 25 | 2 | 58 | 137 | 442 | 558 | 4.92e-24 | 98.2 |
| Msa1324630 | MtrunA17_Chr8g0357931 | 58.763 | 97 | 28 | 3 | 18 | 102 | 387 | 483 | 5.02e-24 | 97.8 |
| Msa1324630 | MtrunA17_Chr8g0357831 | 44.186 | 129 | 31 | 3 | 58 | 149 | 164 | 288 | 5.97e-24 | 97.4 |
| Msa1324630 | MtrunA17_Chr8g0357631 | 44.186 | 129 | 31 | 3 | 58 | 149 | 440 | 564 | 1.51e-23 | 96.7 |
| Msa1324630 | MtrunA17_Chr3g0078541 | 38.462 | 143 | 45 | 4 | 35 | 140 | 484 | 620 | 3.84e-21 | 89.7 |
| Msa1324630 | MtrunA17_Chr3g0078521 | 37.143 | 140 | 46 | 2 | 35 | 137 | 473 | 607 | 8.51e-21 | 88.6 |
| Msa1324630 | MtrunA17_Chr8g0361251 | 39.423 | 104 | 27 | 1 | 70 | 137 | 491 | 594 | 6.32e-19 | 83.2 |
| Msa1324630 | MtrunA17_Chr8g0361301 | 39.423 | 104 | 27 | 1 | 70 | 137 | 491 | 594 | 6.51e-19 | 83.2 |
| Msa1324630 | MtrunA17_Chr8g0361261 | 39.423 | 104 | 27 | 1 | 70 | 137 | 522 | 625 | 6.61e-19 | 83.2 |
| Msa1324630 | MtrunA17_Chr3g0078531 | 38.806 | 134 | 39 | 3 | 44 | 140 | 490 | 617 | 8.98e-19 | 82.8 |
| Msa1324630 | MtrunA17_Chr2g0280781 | 30.872 | 149 | 67 | 1 | 25 | 137 | 450 | 598 | 1.66e-18 | 82.0 |
| Msa1324630 | MtrunA17_Chr8g0361281 | 33.742 | 163 | 71 | 2 | 11 | 137 | 440 | 601 | 2.95e-18 | 81.3 |
| Msa1324630 | MtrunA17_Chr3g0078881 | 38.739 | 111 | 31 | 1 | 63 | 136 | 26 | 136 | 3.16e-18 | 76.6 |
| Msa1324630 | MtrunA17_Chr8g0360201 | 32.934 | 167 | 55 | 6 | 36 | 152 | 346 | 505 | 5.76e-18 | 80.5 |
| Msa1324630 | MtrunA17_Chr5g0428111 | 37.273 | 110 | 30 | 2 | 64 | 137 | 485 | 591 | 2.64e-17 | 78.6 |
| Msa1324630 | MtrunA17_Chr2g0318841 | 34.058 | 138 | 49 | 3 | 39 | 138 | 457 | 590 | 2.93e-17 | 78.6 |
| Msa1324630 | MtrunA17_Chr4g0048641 | 37.273 | 110 | 33 | 1 | 74 | 147 | 476 | 585 | 3.32e-17 | 78.6 |
| Msa1324630 | MtrunA17_Chr4g0048661 | 37.143 | 105 | 30 | 1 | 70 | 138 | 22 | 126 | 4.08e-17 | 77.4 |
| Msa1324630 | MtrunA17_Chr8g0354311 | 39.091 | 110 | 30 | 2 | 63 | 136 | 17 | 125 | 1.50e-16 | 72.0 |
| Msa1324630 | MtrunA17_Chr2g0280791 | 37.037 | 108 | 32 | 1 | 66 | 137 | 502 | 609 | 1.93e-16 | 76.3 |
| Msa1324630 | MtrunA17_Chr8g0354351 | 39.450 | 109 | 30 | 1 | 64 | 136 | 312 | 420 | 2.32e-16 | 75.9 |
| Msa1324630 | MtrunA17_Chr4g0048791 | 35.238 | 105 | 32 | 1 | 70 | 138 | 517 | 621 | 3.25e-16 | 75.5 |
| Msa1324630 | MtrunA17_Chr8g0354431 | 34.375 | 128 | 43 | 2 | 64 | 150 | 321 | 448 | 6.70e-16 | 74.7 |
| Msa1324630 | MtrunA17_Chr2g0280831 | 37.500 | 104 | 29 | 1 | 70 | 137 | 80 | 183 | 8.74e-16 | 73.9 |
| Msa1324630 | MtrunA17_Chr4g0048801 | 28.834 | 163 | 80 | 1 | 12 | 138 | 445 | 607 | 1.01e-15 | 73.9 |
| Msa1324630 | MtrunA17_Chr4g0048701 | 35.922 | 103 | 30 | 1 | 70 | 136 | 31 | 133 | 2.12e-15 | 69.3 |
| Msa1324630 | MtrunA17_Chr8g0354281 | 37.273 | 110 | 33 | 1 | 64 | 137 | 314 | 423 | 2.56e-15 | 72.8 |
| Msa1324630 | MtrunA17_Chr2g0280771 | 37.383 | 107 | 31 | 1 | 67 | 137 | 464 | 570 | 2.90e-15 | 72.8 |
| Msa1324630 | MtrunA17_Chr2g0280801 | 36.449 | 107 | 32 | 1 | 67 | 137 | 509 | 615 | 4.09e-15 | 72.4 |
| Msa1324630 | MtrunA17_Chr3g0082941 | 36.364 | 110 | 34 | 1 | 64 | 137 | 152 | 261 | 5.87e-15 | 71.6 |
| Msa1324630 | MtrunA17_Chr4g0048761 | 35.922 | 103 | 30 | 1 | 70 | 136 | 519 | 621 | 6.69e-15 | 71.6 |
| Msa1324630 | MtrunA17_Chr4g0048731 | 34.286 | 105 | 33 | 1 | 70 | 138 | 31 | 135 | 1.72e-14 | 70.1 |
| Msa1324630 | MtrunA17_Chr3g0081011 | 35.455 | 110 | 35 | 1 | 64 | 137 | 318 | 427 | 1.87e-14 | 70.5 |
| Msa1324630 | MtrunA17_Chr3g0081001 | 35.455 | 110 | 35 | 1 | 64 | 137 | 322 | 431 | 2.56e-14 | 70.1 |
| Msa1324630 | MtrunA17_Chr8g0357781 | 39.844 | 128 | 60 | 6 | 57 | 177 | 37 | 154 | 4.24e-14 | 66.2 |
| Msa1324630 | MtrunA17_Chr8g0361331 | 66.667 | 36 | 12 | 0 | 102 | 137 | 38 | 73 | 9.88e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1324630 | AT1G67520.1 | 41.905 | 105 | 25 | 1 | 69 | 137 | 404 | 508 | 4.24e-20 | 87.0 |
| Msa1324630 | AT1G67520.2 | 41.905 | 105 | 25 | 1 | 69 | 137 | 479 | 583 | 5.25e-20 | 86.7 |
| Msa1324630 | AT1G67520.6 | 41.905 | 105 | 25 | 1 | 69 | 137 | 486 | 590 | 7.37e-20 | 86.3 |
| Msa1324630 | AT1G67520.4 | 41.905 | 105 | 25 | 1 | 69 | 137 | 436 | 540 | 7.66e-20 | 86.3 |
| Msa1324630 | AT1G67520.3 | 41.905 | 105 | 25 | 1 | 69 | 137 | 479 | 583 | 7.95e-20 | 86.3 |
| Msa1324630 | AT1G67520.8 | 41.905 | 105 | 25 | 1 | 69 | 137 | 271 | 375 | 1.00e-19 | 85.9 |
| Msa1324630 | AT1G67520.7 | 41.905 | 105 | 25 | 1 | 69 | 137 | 271 | 375 | 1.00e-19 | 85.9 |
| Msa1324630 | AT1G67520.5 | 41.905 | 105 | 25 | 1 | 69 | 137 | 242 | 346 | 1.03e-19 | 85.9 |
| Msa1324630 | AT3G16030.3 | 38.532 | 109 | 31 | 1 | 69 | 141 | 531 | 639 | 3.33e-18 | 81.6 |
| Msa1324630 | AT3G16030.8 | 38.532 | 109 | 31 | 1 | 69 | 141 | 531 | 639 | 3.33e-18 | 81.6 |
| Msa1324630 | AT3G16030.5 | 38.532 | 109 | 31 | 1 | 69 | 141 | 531 | 639 | 3.33e-18 | 81.6 |
| Msa1324630 | AT3G16030.4 | 39.048 | 105 | 28 | 1 | 69 | 137 | 531 | 635 | 2.54e-17 | 79.0 |
| Msa1324630 | AT3G16030.1 | 39.048 | 105 | 28 | 1 | 69 | 137 | 510 | 614 | 2.67e-17 | 79.0 |
| Msa1324630 | AT3G16030.7 | 39.048 | 105 | 28 | 1 | 69 | 137 | 531 | 635 | 2.71e-17 | 79.0 |
| Msa1324630 | AT3G16030.6 | 39.048 | 105 | 28 | 1 | 69 | 137 | 531 | 635 | 2.86e-17 | 79.0 |
| Msa1324630 | AT3G16030.2 | 39.048 | 105 | 28 | 1 | 69 | 137 | 387 | 491 | 3.43e-17 | 78.6 |
| Msa1324630 | AT4G21390.2 | 36.885 | 122 | 36 | 2 | 70 | 150 | 513 | 634 | 5.13e-17 | 78.2 |
| Msa1324630 | AT4G21390.1 | 36.885 | 122 | 36 | 2 | 70 | 150 | 513 | 634 | 5.69e-17 | 78.2 |
| Msa1324630 | AT4G27300.1 | 40.385 | 104 | 26 | 1 | 70 | 137 | 484 | 587 | 2.48e-15 | 73.6 |
Find 35 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGGATTTCTATCTATT+TGG | 0.178416 | 8_4:+34916048 | Msa1324630:CDS |
| AGAAATTGCTGTCGTATAAT+AGG | 0.292311 | 8_4:-34918138 | None:intergenic |
| TCTACCTCATGGGAATTAGA+AGG | 0.324564 | 8_4:+34918158 | Msa1324630:CDS |
| AGGCTATGGACCTGTTTATA+AGG | 0.364712 | 8_4:+34915490 | Msa1324630:CDS |
| GTATAATAGGTTTCGGTGAC+TGG | 0.375054 | 8_4:-34918125 | None:intergenic |
| TTTAAAGTCACCTTATAAAC+AGG | 0.382497 | 8_4:-34915500 | None:intergenic |
| TGCTGTCGTATAATAGGTTT+CGG | 0.387074 | 8_4:-34918132 | None:intergenic |
| TTCAAGATCTTTGATATCAT+AGG | 0.402775 | 8_4:-34915372 | None:intergenic |
| AAGTAAAAGAAAGGAAGGTA+AGG | 0.405875 | 8_4:+34915331 | Msa1324630:CDS |
| GGAAGGTAAGGGCAACGATT+TGG | 0.433015 | 8_4:+34915343 | Msa1324630:CDS |
| GTTGCATTCATGAACAAGAA+AGG | 0.441551 | 8_4:+34915995 | Msa1324630:CDS |
| AAGAAAAGTAAAAGAAAGGA+AGG | 0.457337 | 8_4:+34915326 | Msa1324630:CDS |
| AAAACAAGATGGATATGTAT+AGG | 0.466623 | 8_4:+34915266 | Msa1324630:CDS |
| CGACAGCAATTTCTACCTCA+TGG | 0.496070 | 8_4:+34918147 | Msa1324630:CDS |
| ATTAGAAGAGAGATCTTTGA+GGG | 0.497102 | 8_4:+34918083 | Msa1324630:CDS |
| AGATCTTGAAGATGACTTCA+AGG | 0.498652 | 8_4:+34915385 | Msa1324630:CDS |
| AGATAAGAAAAGTAAAAGAA+AGG | 0.500169 | 8_4:+34915322 | Msa1324630:CDS |
| AAGTTAGGACATGGAGGCTA+TGG | 0.504409 | 8_4:+34915476 | Msa1324630:CDS |
| ATATATGCCAAACAAAAGCT+TGG | 0.511119 | 8_4:+34916032 | Msa1324630:CDS |
| CTACCTCATGGGAATTAGAA+GGG | 0.522600 | 8_4:+34918159 | Msa1324630:CDS |
| ACAAATCTTGTACAACAACT+TGG | 0.546856 | 8_4:+34915970 | Msa1324630:CDS |
| TACTTTAAAATAGTCAATGC+AGG | 0.550523 | 8_4:+34915242 | Msa1324630:CDS |
| TCAATGCAGGTAAAACAAGA+TGG | 0.553793 | 8_4:+34915255 | Msa1324630:CDS |
| AGGTAAGGGCAACGATTTGG+TGG | 0.556870 | 8_4:+34915346 | Msa1324630:CDS |
| GACAGCAATTTCTACCTCAT+GGG | 0.565601 | 8_4:+34918148 | Msa1324630:CDS |
| CCTGAAAACAAGTTAGGACA+TGG | 0.566032 | 8_4:+34915467 | Msa1324630:CDS |
| TATTAGAAGAGAGATCTTTG+AGG | 0.566489 | 8_4:+34918082 | Msa1324630:CDS |
| AGTAAAAGAAAGGAAGGTAA+GGG | 0.569451 | 8_4:+34915332 | Msa1324630:CDS |
| TAGAAGAGAGATCTTTGAGG+GGG | 0.573606 | 8_4:+34918085 | Msa1324630:CDS |
| GATCTTGAAGATGACTTCAA+GGG | 0.590398 | 8_4:+34915386 | Msa1324630:CDS |
| TCTCTTCTAATATAGAATGC+CGG | 0.604502 | 8_4:-34918071 | None:intergenic |
| ACAACCATACCAAGAAAGAC+CGG | 0.621960 | 8_4:+34918052 | Msa1324630:intron |
| TTAGAAGAGAGATCTTTGAG+GGG | 0.655556 | 8_4:+34918084 | Msa1324630:CDS |
| TTTCCCTTCTAATTCCCATG+AGG | 0.700586 | 8_4:-34918162 | None:intergenic |
| GAAAACAAGTTAGGACATGG+AGG | 0.719444 | 8_4:+34915470 | Msa1324630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAAAGTACAAAATTT+AGG | - | chr8_4:34915829-34915848 | None:intergenic | 10.0% |
| !! | TATAAGTAATCAATATATAT+TGG | + | chr8_4:34917155-34917174 | Msa1324630:intron | 10.0% |
| !!! | TTTTAGTTAAAATTTAAAAG+TGG | - | chr8_4:34917348-34917367 | None:intergenic | 10.0% |
| !!! | ATCTTTATCTTTGATTTTTT+TGG | + | chr8_4:34915293-34915312 | Msa1324630:CDS | 15.0% |
| !!! | TTTTAACTATACATCAATTT+TGG | + | chr8_4:34915424-34915443 | Msa1324630:CDS | 15.0% |
| !!! | GAGAATTATTAACAAAATTT+TGG | + | chr8_4:34916582-34916601 | Msa1324630:intron | 15.0% |
| !! | ATTTAATAGAATTAGAAACA+TGG | - | chr8_4:34916810-34916829 | None:intergenic | 15.0% |
| !! | TTCAAAAATTGAAATAAGAA+AGG | - | chr8_4:34917538-34917557 | None:intergenic | 15.0% |
| !!! | TTTCTTATTTCAATTTTTGA+AGG | + | chr8_4:34917537-34917556 | Msa1324630:intron | 15.0% |
| !! | AAATTAAATCTATGTAAAGA+TGG | + | chr8_4:34917902-34917921 | Msa1324630:intron | 15.0% |
| !! | AGATAAGAAAAGTAAAAGAA+AGG | + | chr8_4:34915322-34915341 | Msa1324630:CDS | 20.0% |
| !!! | ACAAAACTTAATGCATTTTT+TGG | + | chr8_4:34915675-34915694 | Msa1324630:intron | 20.0% |
| !!! | TTTTTTGGTATTTTTGTGTA+TGG | + | chr8_4:34915690-34915709 | Msa1324630:intron | 20.0% |
| !!! | TACTTTTATTTTACGATTTC+AGG | + | chr8_4:34915837-34915856 | Msa1324630:intron | 20.0% |
| !!! | ACTTTTATTTTACGATTTCA+GGG | + | chr8_4:34915838-34915857 | Msa1324630:intron | 20.0% |
| !!! | TGTTTTTGAAAGTCTTTTTA+CGG | - | chr8_4:34915890-34915909 | None:intergenic | 20.0% |
| !! | GTAATATTCTAATCAAAAGT+AGG | - | chr8_4:34916232-34916251 | None:intergenic | 20.0% |
| !! | AAATTCCTTCAATTATGTTT+AGG | - | chr8_4:34916327-34916346 | None:intergenic | 20.0% |
| !!! | TTACCTTTTTATTAATGAGT+AGG | + | chr8_4:34916549-34916568 | Msa1324630:intron | 20.0% |
| !! | AATTCTATTAAATTACTCAC+AGG | + | chr8_4:34916817-34916836 | Msa1324630:intron | 20.0% |
| !! | GGATTATGATAAATCTATTA+TGG | - | chr8_4:34917294-34917313 | None:intergenic | 20.0% |
| !! | ATTACTAAAAATCCATTACA+CGG | - | chr8_4:34917315-34917334 | None:intergenic | 20.0% |
| !! | AGTTAAAATTTAAAAGTGGT+AGG | - | chr8_4:34917344-34917363 | None:intergenic | 20.0% |
| !! | CTACAAATTAAAGAATAAAG+TGG | - | chr8_4:34917491-34917510 | None:intergenic | 20.0% |
| !!! | CACTTTATTCTTTAATTTGT+AGG | + | chr8_4:34917489-34917508 | Msa1324630:intron | 20.0% |
| !!! | TTCAATTTTTGAAGGAAAAT+AGG | + | chr8_4:34917545-34917564 | Msa1324630:intron | 20.0% |
| !! | TAGAAAATGTAATGATTGTA+TGG | + | chr8_4:34917793-34917812 | Msa1324630:intron | 20.0% |
| !!! | ACCTTGTTTTTGTTTCTTTT+TGG | - | chr8_4:34915215-34915234 | None:intergenic | 25.0% |
| ! | AGAAACAAAAACAAGGTATA+TGG | + | chr8_4:34915218-34915237 | Msa1324630:CDS | 25.0% |
| !!! | TACTTTAAAATAGTCAATGC+AGG | + | chr8_4:34915242-34915261 | Msa1324630:CDS | 25.0% |
| ! | AAAACAAGATGGATATGTAT+AGG | + | chr8_4:34915266-34915285 | Msa1324630:CDS | 25.0% |
| ! | AAGAAAAGTAAAAGAAAGGA+AGG | + | chr8_4:34915326-34915345 | Msa1324630:CDS | 25.0% |
| ! | TTCAAGATCTTTGATATCAT+AGG | - | chr8_4:34915375-34915394 | None:intergenic | 25.0% |
| !! | TTTAAAGTCACCTTATAAAC+AGG | - | chr8_4:34915503-34915522 | None:intergenic | 25.0% |
| ! | AAAAGACTTTCAAAAACATC+TGG | + | chr8_4:34915892-34915911 | Msa1324630:intron | 25.0% |
| ! | CAAAAAACATGGAATTTACT+TGG | - | chr8_4:34916164-34916183 | None:intergenic | 25.0% |
| ! | ATAATTGAAGGAATTTCTCA+AGG | + | chr8_4:34916331-34916350 | Msa1324630:intron | 25.0% |
| ! | AACCCAAAAATTTCTGATTT+CGG | + | chr8_4:34916437-34916456 | Msa1324630:intron | 25.0% |
| !! | TACCGAAATCAGAAATTTTT+GGG | - | chr8_4:34916442-34916461 | None:intergenic | 25.0% |
| !! | ATACCGAAATCAGAAATTTT+TGG | - | chr8_4:34916443-34916462 | None:intergenic | 25.0% |
| ! | AAAAATTTCTGATTTCGGTA+TGG | + | chr8_4:34916442-34916461 | Msa1324630:intron | 25.0% |
| ! | TTGCCTACTCATTAATAAAA+AGG | - | chr8_4:34916555-34916574 | None:intergenic | 25.0% |
| ! | TTGCTTCTTGAAATTATTTG+TGG | + | chr8_4:34916683-34916702 | Msa1324630:intron | 25.0% |
| ! | ACAAATGCATCATTTAATGT+TGG | - | chr8_4:34916887-34916906 | None:intergenic | 25.0% |
| ! | ATTTATCATAATCCGTGTAA+TGG | + | chr8_4:34917300-34917319 | Msa1324630:intron | 25.0% |
| ! | TAAAATTTAAAAGTGGTAGG+TGG | - | chr8_4:34917341-34917360 | None:intergenic | 25.0% |
| ! | AAAGAAACAATCAAAAACCA+TGG | - | chr8_4:34917424-34917443 | None:intergenic | 25.0% |
| !!! | TTTTGAAGGAAAATAGGTAA+TGG | + | chr8_4:34917551-34917570 | Msa1324630:intron | 25.0% |
| ! | GATGTTAAGGAATTAAGAAA+AGG | + | chr8_4:34917639-34917658 | Msa1324630:intron | 25.0% |
| ! | TGCTAAAAATGAATGAACAA+AGG | - | chr8_4:34917680-34917699 | None:intergenic | 25.0% |
| !!! | TCATTCATTTTTAGCAGAAT+AGG | + | chr8_4:34917684-34917703 | Msa1324630:intron | 25.0% |
| ! | TAAATCTATGTAAAGATGGT+TGG | + | chr8_4:34917906-34917925 | Msa1324630:intron | 25.0% |
| ATAAAAAGGTGGATATGGAT+AGG | + | chr8_4:34915136-34915155 | Msa1324630:intron | 30.0% | |
| !!! | GTTTTTGTTTCTTTTTGGCT+AGG | - | chr8_4:34915210-34915229 | None:intergenic | 30.0% |
| GCCAAAAAGAAACAAAAACA+AGG | + | chr8_4:34915211-34915230 | Msa1324630:intron | 30.0% | |
| AAGTAAAAGAAAGGAAGGTA+AGG | + | chr8_4:34915331-34915350 | Msa1324630:CDS | 30.0% | |
| AGTAAAAGAAAGGAAGGTAA+GGG | + | chr8_4:34915332-34915351 | Msa1324630:CDS | 30.0% | |
| !! | ATCAATTTTGGAAGCAACTA+TGG | + | chr8_4:34915436-34915455 | Msa1324630:CDS | 30.0% |
| AAACTAGTGTTTCTTATGTG+TGG | + | chr8_4:34915615-34915634 | Msa1324630:intron | 30.0% | |
| !! | TGTGGTAATATTGTTTTTCG+TGG | + | chr8_4:34915633-34915652 | Msa1324630:intron | 30.0% |
| !! | GTAATATTGTTTTTCGTGGT+TGG | + | chr8_4:34915637-34915656 | Msa1324630:intron | 30.0% |
| ACAAATCTTGTACAACAACT+TGG | + | chr8_4:34915970-34915989 | Msa1324630:CDS | 30.0% | |
| ATATATGCCAAACAAAAGCT+TGG | + | chr8_4:34916032-34916051 | Msa1324630:CDS | 30.0% | |
| ! | TAGAAATCCAAGCTTTTGTT+TGG | - | chr8_4:34916042-34916061 | None:intergenic | 30.0% |
| AGCTTGGATTTCTATCTATT+TGG | + | chr8_4:34916048-34916067 | Msa1324630:CDS | 30.0% | |
| CTAATGAGTCACAAAAAACA+TGG | - | chr8_4:34916175-34916194 | None:intergenic | 30.0% | |
| CAAGAAAAAAGTTACTAGAC+TGG | + | chr8_4:34916293-34916312 | Msa1324630:intron | 30.0% | |
| AAAATCATTCAGAGACTTGA+AGG | + | chr8_4:34916385-34916404 | Msa1324630:intron | 30.0% | |
| !! | AACAATCCTATTGGTGTTAA+CGG | - | chr8_4:34916495-34916514 | None:intergenic | 30.0% |
| TTAACACCAATAGGATTGTT+GGG | + | chr8_4:34916495-34916514 | Msa1324630:intron | 30.0% | |
| !! | TTAACAAAATTTTGGTGCAG+TGG | + | chr8_4:34916590-34916609 | Msa1324630:intron | 30.0% |
| AAGTCTGATGTTTATAGCTT+TGG | + | chr8_4:34916656-34916675 | Msa1324630:intron | 30.0% | |
| TATTAAATTACTCACAGGCA+TGG | + | chr8_4:34916822-34916841 | Msa1324630:intron | 30.0% | |
| ATTAAATTACTCACAGGCAT+GGG | + | chr8_4:34916823-34916842 | Msa1324630:intron | 30.0% | |
| ! | TGGTGAATATCTAAAGCTAA+TGG | + | chr8_4:34916859-34916878 | Msa1324630:intron | 30.0% |
| GATATAACATCAGACATTGT+AGG | - | chr8_4:34916977-34916996 | None:intergenic | 30.0% | |
| TATCTTCTAACATAGAATGC+TGG | - | chr8_4:34917043-34917062 | None:intergenic | 30.0% | |
| GTTAGAAGATAGATCTTTGA+CGG | + | chr8_4:34917052-34917071 | Msa1324630:intron | 30.0% | |
| TTAGAAGATAGATCTTTGAC+GGG | + | chr8_4:34917053-34917072 | Msa1324630:intron | 30.0% | |
| AATGCAAGTAAAAAAAGGCT+TGG | + | chr8_4:34917196-34917215 | Msa1324630:intron | 30.0% | |
| ! | AGTAAAAAAAGGCTTGGTTA+TGG | + | chr8_4:34917202-34917221 | Msa1324630:intron | 30.0% |
| TTGAGAAAAGAAACATTGCA+TGG | + | chr8_4:34917818-34917837 | Msa1324630:intron | 30.0% | |
| TGAGAAAAGAAACATTGCAT+GGG | + | chr8_4:34917819-34917838 | Msa1324630:intron | 30.0% | |
| AGTCATGAAATATTGTGTTC+TGG | + | chr8_4:34917985-34918004 | Msa1324630:intron | 30.0% | |
| ! | TTTGTTTGTTAACGTGTGAT+TGG | - | chr8_4:34918023-34918042 | None:intergenic | 30.0% |
| TCTCTTCTAATATAGAATGC+CGG | - | chr8_4:34918074-34918093 | None:intergenic | 30.0% | |
| TATTAGAAGAGAGATCTTTG+AGG | + | chr8_4:34918082-34918101 | Msa1324630:CDS | 30.0% | |
| ATTAGAAGAGAGATCTTTGA+GGG | + | chr8_4:34918083-34918102 | Msa1324630:CDS | 30.0% | |
| AGAAATTGCTGTCGTATAAT+AGG | - | chr8_4:34918141-34918160 | None:intergenic | 30.0% | |
| CAGGTATAAAAAGGTGGATA+TGG | + | chr8_4:34915131-34915150 | Msa1324630:intron | 35.0% | |
| TCAATGCAGGTAAAACAAGA+TGG | + | chr8_4:34915255-34915274 | Msa1324630:CDS | 35.0% | |
| AGATCTTGAAGATGACTTCA+AGG | + | chr8_4:34915385-34915404 | Msa1324630:CDS | 35.0% | |
| GATCTTGAAGATGACTTCAA+GGG | + | chr8_4:34915386-34915405 | Msa1324630:CDS | 35.0% | |
| ! | TTTTCCCCTGAAAACAAGTT+AGG | + | chr8_4:34915461-34915480 | Msa1324630:CDS | 35.0% |
| !!! | ATGTCCTAACTTGTTTTCAG+GGG | - | chr8_4:34915468-34915487 | None:intergenic | 35.0% |
| !!! | CATGTCCTAACTTGTTTTCA+GGG | - | chr8_4:34915469-34915488 | None:intergenic | 35.0% |
| !! | GTGGTTGGTGATTATTGTTT+CGG | + | chr8_4:34915652-34915671 | Msa1324630:intron | 35.0% |
| TTTACGATTTCAGGGAATCT+TGG | + | chr8_4:34915846-34915865 | Msa1324630:intron | 35.0% | |
| CTTTCAAAAACATCTGGACA+AGG | + | chr8_4:34915898-34915917 | Msa1324630:intron | 35.0% | |
| GTTGCATTCATGAACAAGAA+AGG | + | chr8_4:34915995-34916014 | Msa1324630:CDS | 35.0% | |
| AAGCGCCTAAACATAATTGA+AGG | + | chr8_4:34916319-34916338 | Msa1324630:intron | 35.0% | |
| AATCAACCGTTAACACCAAT+AGG | + | chr8_4:34916486-34916505 | Msa1324630:intron | 35.0% | |
| GTTAACACCAATAGGATTGT+TGG | + | chr8_4:34916494-34916513 | Msa1324630:intron | 35.0% | |
| CATACATGTCCGATTAGATT+TGG | - | chr8_4:34916746-34916765 | None:intergenic | 35.0% | |
| TTGTTCCTGATGAAGTGAAA+AGG | + | chr8_4:34916903-34916922 | Msa1324630:intron | 35.0% | |
| !!! | ACATAGAATGCTGGTTTTCT+TGG | - | chr8_4:34917034-34917053 | None:intergenic | 35.0% |
| TAGAAGATAGATCTTTGACG+GGG | + | chr8_4:34917054-34917073 | Msa1324630:intron | 35.0% | |
| AGAAATTGCTGTCGTAGAAT+AGG | - | chr8_4:34917110-34917129 | None:intergenic | 35.0% | |
| TCTACCTCATGTGAATTAGA+AGG | + | chr8_4:34917127-34917146 | Msa1324630:intron | 35.0% | |
| CTACCTCATGTGAATTAGAA+GGG | + | chr8_4:34917128-34917147 | Msa1324630:intron | 35.0% | |
| TTTCCCTTCTAATTCACATG+AGG | - | chr8_4:34917134-34917153 | None:intergenic | 35.0% | |
| ATATATTGGTCCAAAACTGC+AGG | + | chr8_4:34917169-34917188 | Msa1324630:intron | 35.0% | |
| GCCAGAATGCAAGTAAAAAA+AGG | + | chr8_4:34917191-34917210 | Msa1324630:intron | 35.0% | |
| !!! | GCCTTTTTTTACTTGCATTC+TGG | - | chr8_4:34917195-34917214 | None:intergenic | 35.0% |
| AATTTAAAAGTGGTAGGTGG+TGG | - | chr8_4:34917338-34917357 | None:intergenic | 35.0% | |
| ! | CTTACTGATTAGAATTGCCA+TGG | + | chr8_4:34917404-34917423 | Msa1324630:intron | 35.0% |
| ! | GAAAGGCATAATCCAAACTA+TGG | - | chr8_4:34917521-34917540 | None:intergenic | 35.0% |
| !! | GGAAAATAGGTAATGGAAGT+AGG | + | chr8_4:34917558-34917577 | Msa1324630:intron | 35.0% |
| GGAAGTAGGAGAGATAATTT+CGG | + | chr8_4:34917572-34917591 | Msa1324630:intron | 35.0% | |
| TTCGTATCTACATATGGTTG+TGG | - | chr8_4:34917601-34917620 | None:intergenic | 35.0% | |
| GCTTCTTTCGTATCTACATA+TGG | - | chr8_4:34917607-34917626 | None:intergenic | 35.0% | |
| TACGAAAGAAGCAAACAAAC+TGG | + | chr8_4:34917615-34917634 | Msa1324630:intron | 35.0% | |
| AAACATTGCATGGGAATAGA+TGG | + | chr8_4:34917828-34917847 | Msa1324630:intron | 35.0% | |
| !! | TAAAGATGGTTGGCTTTCTT+AGG | + | chr8_4:34917916-34917935 | Msa1324630:intron | 35.0% |
| ! | TGAAATATTGTGTTCTGGAC+CGG | + | chr8_4:34917990-34918009 | Msa1324630:intron | 35.0% |
| TTAGAAGAGAGATCTTTGAG+GGG | + | chr8_4:34918084-34918103 | Msa1324630:CDS | 35.0% | |
| TGCTGTCGTATAATAGGTTT+CGG | - | chr8_4:34918135-34918154 | None:intergenic | 35.0% | |
| !!! | CCATGTCCTAACTTGTTTTC+AGG | - | chr8_4:34915470-34915489 | None:intergenic | 40.0% |
| CCTGAAAACAAGTTAGGACA+TGG | + | chr8_4:34915467-34915486 | Msa1324630:CDS | 40.0% | |
| GAAAACAAGTTAGGACATGG+AGG | + | chr8_4:34915470-34915489 | Msa1324630:CDS | 40.0% | |
| AGGCTATGGACCTGTTTATA+AGG | + | chr8_4:34915490-34915509 | Msa1324630:CDS | 40.0% | |
| AACATCTGGACAAGGAATTG+TGG | + | chr8_4:34915906-34915925 | Msa1324630:intron | 40.0% | |
| ATTCCTTCCATCGCATATTC+TGG | - | chr8_4:34916626-34916645 | None:intergenic | 40.0% | |
| ! | CATGTCCGATTAGATTTGGT+GGG | - | chr8_4:34916742-34916761 | None:intergenic | 40.0% |
| ACATGTCCGATTAGATTTGG+TGG | - | chr8_4:34916743-34916762 | None:intergenic | 40.0% | |
| ! | ATGCACCTTTTCACTTCATC+AGG | - | chr8_4:34916911-34916930 | None:intergenic | 40.0% |
| ! | GTGAAAAGGTGCATTCATGT+TGG | + | chr8_4:34916917-34916936 | Msa1324630:intron | 40.0% |
| ACGGGGAAACAACTACTAAA+GGG | + | chr8_4:34917071-34917090 | Msa1324630:intron | 40.0% | |
| ATTTCACGTGAACTGCTTGT+TGG | + | chr8_4:34917450-34917469 | Msa1324630:intron | 40.0% | |
| CAAACAAACTGGCGATGTTA+AGG | + | chr8_4:34917626-34917645 | Msa1324630:intron | 40.0% | |
| GCTGCAAAGATGTGAATAGA+TGG | + | chr8_4:34917868-34917887 | Msa1324630:intron | 40.0% | |
| ACAACCATACCAAGAAAGAC+CGG | + | chr8_4:34918052-34918071 | Msa1324630:intron | 40.0% | |
| TATAGAATGCCGGTCTTTCT+TGG | - | chr8_4:34918064-34918083 | None:intergenic | 40.0% | |
| ! | TAGAAGAGAGATCTTTGAGG+GGG | + | chr8_4:34918085-34918104 | Msa1324630:CDS | 40.0% |
| AGGGGGAAACAACTTCTAAA+GGG | + | chr8_4:34918102-34918121 | Msa1324630:CDS | 40.0% | |
| GTATAATAGGTTTCGGTGAC+TGG | - | chr8_4:34918128-34918147 | None:intergenic | 40.0% | |
| GACAGCAATTTCTACCTCAT+GGG | + | chr8_4:34917117-34917136 | Msa1324630:intron | 40.0% | |
| TCTACCTCATGGGAATTAGA+AGG | + | chr8_4:34918158-34918177 | Msa1324630:CDS | 40.0% | |
| CTACCTCATGGGAATTAGAA+GGG | + | chr8_4:34918159-34918178 | Msa1324630:CDS | 40.0% | |
| TTTCCCTTCTAATTCCCATG+AGG | - | chr8_4:34918165-34918184 | None:intergenic | 40.0% | |
| AAGTTAGGACATGGAGGCTA+TGG | + | chr8_4:34915476-34915495 | Msa1324630:CDS | 45.0% | |
| TTTCAGGGAATCTTGGCAAC+AGG | + | chr8_4:34915853-34915872 | Msa1324630:intron | 45.0% | |
| TTCAGGGAATCTTGGCAACA+GGG | + | chr8_4:34915854-34915873 | Msa1324630:intron | 45.0% | |
| CTACGTCCCAACAATCCTAT+TGG | - | chr8_4:34916504-34916523 | None:intergenic | 45.0% | |
| CATGTCTCCAGAATATGCGA+TGG | + | chr8_4:34916616-34916635 | Msa1324630:intron | 45.0% | |
| TCTCCAGAATATGCGATGGA+AGG | + | chr8_4:34916620-34916639 | Msa1324630:intron | 45.0% | |
| GATCGCCCACCAAATCTAAT+CGG | + | chr8_4:34916734-34916753 | Msa1324630:intron | 45.0% | |
| GACGGGGAAACAACTACTAA+AGG | + | chr8_4:34917070-34917089 | Msa1324630:intron | 45.0% | |
| TGCTGTCGTAGAATAGGTGT+CGG | - | chr8_4:34917104-34917123 | None:intergenic | 45.0% | |
| TGTAGGTGCATGCCATAGTT+TGG | + | chr8_4:34917506-34917525 | Msa1324630:intron | 45.0% | |
| !! | GATGGTTGGCTTTCTTAGGA+AGG | + | chr8_4:34917920-34917939 | Msa1324630:intron | 45.0% |
| GGCTTTCTTAGGAAGGTTGT+TGG | + | chr8_4:34917927-34917946 | Msa1324630:intron | 45.0% | |
| !! | ACGTGTGATTGGTTTCTGAC+CGG | - | chr8_4:34918012-34918031 | None:intergenic | 45.0% |
| AATGCCGGTCTTTCTTGGTA+TGG | - | chr8_4:34918059-34918078 | None:intergenic | 45.0% | |
| GAGGGGGAAACAACTTCTAA+AGG | + | chr8_4:34918101-34918120 | Msa1324630:CDS | 45.0% | |
| CGACAGCAATTTCTACCTCA+TGG | + | chr8_4:34917116-34917135 | Msa1324630:intron | 45.0% | |
| !! | ATAAATTACTATTATAATTA+TGG | + | chr8_4:34915575-34915594 | Msa1324630:intron | 5.0% |
| GGAAGGTAAGGGCAACGATT+TGG | + | chr8_4:34915343-34915362 | Msa1324630:CDS | 50.0% | |
| ! | AGGTAAGGGCAACGATTTGG+TGG | + | chr8_4:34915346-34915365 | Msa1324630:CDS | 50.0% |
| GCATGGGAGCTATGGAATGA+TGG | + | chr8_4:34916839-34916858 | Msa1324630:intron | 50.0% | |
| !! | GTAGAATAGGTGTCGGTGTC+TGG | - | chr8_4:34917097-34917116 | None:intergenic | 50.0% |
| ! | TGCATTCTGGCCTGCAGTTT+TGG | - | chr8_4:34917182-34917201 | None:intergenic | 50.0% |
| ACTCACAGGCATGGGAGCTA+TGG | + | chr8_4:34916831-34916850 | Msa1324630:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 34915128 | 34918190 | 34915128 | ID=Msa1324630;Name=Msa1324630 |
| chr8_4 | mRNA | 34915128 | 34918190 | 34915128 | ID=Msa1324630-mRNA-1;Parent=Msa1324630;Name=Msa1324630-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|1|0|0|4|0|177 |
| chr8_4 | exon | 34915128 | 34915133 | 34915128 | ID=Msa1324630-mRNA-1:exon:11115;Parent=Msa1324630-mRNA-1 |
| chr8_4 | exon | 34915212 | 34915511 | 34915212 | ID=Msa1324630-mRNA-1:exon:11116;Parent=Msa1324630-mRNA-1 |
| chr8_4 | exon | 34915967 | 34916069 | 34915967 | ID=Msa1324630-mRNA-1:exon:11117;Parent=Msa1324630-mRNA-1 |
| chr8_4 | exon | 34918066 | 34918190 | 34918066 | ID=Msa1324630-mRNA-1:exon:11118;Parent=Msa1324630-mRNA-1 |
| chr8_4 | CDS | 34915128 | 34915133 | 34915128 | ID=Msa1324630-mRNA-1:cds;Parent=Msa1324630-mRNA-1 |
| chr8_4 | CDS | 34915212 | 34915511 | 34915212 | ID=Msa1324630-mRNA-1:cds;Parent=Msa1324630-mRNA-1 |
| chr8_4 | CDS | 34915967 | 34916069 | 34915967 | ID=Msa1324630-mRNA-1:cds;Parent=Msa1324630-mRNA-1 |
| chr8_4 | CDS | 34918066 | 34918190 | 34918066 | ID=Msa1324630-mRNA-1:cds;Parent=Msa1324630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
