Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1326740 | sp|P43291|SRK2A_ARATH | 65.385 | 130 | 24 | 1 | 1 | 109 | 180 | 309 | 8.02e-56 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1326740 | A0A1S2YF16 | 80.147 | 136 | 6 | 1 | 1 | 115 | 180 | 315 | 1.97e-69 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1326740 | MtrunA17_Chr8g0385281 | 80.147 | 136 | 6 | 1 | 1 | 115 | 181 | 316 | 1.12e-72 | 219 |
| Msa1326740 | MtrunA17_Chr3g0131061 | 71.852 | 135 | 17 | 1 | 1 | 114 | 180 | 314 | 6.86e-66 | 202 |
| Msa1326740 | MtrunA17_Chr2g0277501 | 63.704 | 135 | 28 | 1 | 1 | 114 | 180 | 314 | 7.18e-57 | 179 |
| Msa1326740 | MtrunA17_Chr5g0399911 | 52.419 | 124 | 37 | 2 | 1 | 102 | 195 | 318 | 2.70e-36 | 126 |
| Msa1326740 | MtrunA17_Chr4g0055451 | 50.000 | 136 | 42 | 3 | 1 | 113 | 181 | 313 | 6.93e-36 | 125 |
| Msa1326740 | MtrunA17_Chr8g0381821 | 48.333 | 120 | 39 | 2 | 1 | 99 | 180 | 297 | 7.45e-32 | 114 |
| Msa1326740 | MtrunA17_Chr5g0426521 | 49.593 | 123 | 38 | 2 | 1 | 102 | 180 | 299 | 7.61e-32 | 114 |
| Msa1326740 | MtrunA17_Chr4g0055431 | 50.407 | 123 | 35 | 3 | 1 | 100 | 187 | 306 | 9.33e-32 | 114 |
| Msa1326740 | MtrunA17_Chr4g0045371 | 48.780 | 123 | 41 | 2 | 1 | 102 | 199 | 320 | 2.91e-31 | 113 |
| Msa1326740 | MtrunA17_Chr3g0123791 | 46.400 | 125 | 44 | 2 | 1 | 102 | 181 | 305 | 3.07e-31 | 112 |
| Msa1326740 | MtrunA17_Chr8g0380661 | 44.882 | 127 | 49 | 1 | 1 | 106 | 177 | 303 | 1.40e-30 | 110 |
| Msa1326740 | MtrunA17_Chr1g0162301 | 47.967 | 123 | 42 | 2 | 1 | 102 | 200 | 321 | 1.87e-30 | 111 |
| Msa1326740 | MtrunA17_Chr5g0402661 | 44.715 | 123 | 46 | 2 | 1 | 102 | 194 | 315 | 5.00e-29 | 107 |
| Msa1326740 | MtrunA17_Chr8g0374571 | 44.715 | 123 | 46 | 2 | 1 | 102 | 199 | 320 | 7.25e-28 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1326740 | AT1G10940.2 | 65.385 | 130 | 24 | 1 | 1 | 109 | 188 | 317 | 7.51e-57 | 180 |
| Msa1326740 | AT1G10940.1 | 65.385 | 130 | 24 | 1 | 1 | 109 | 180 | 309 | 8.16e-57 | 180 |
| Msa1326740 | AT1G60940.1 | 64.444 | 135 | 27 | 1 | 1 | 114 | 180 | 314 | 1.21e-56 | 179 |
| Msa1326740 | AT1G60940.2 | 64.444 | 135 | 27 | 1 | 1 | 114 | 180 | 314 | 1.21e-56 | 179 |
| Msa1326740 | AT5G63650.1 | 67.424 | 132 | 22 | 1 | 2 | 112 | 181 | 312 | 4.49e-56 | 177 |
| Msa1326740 | AT5G08590.2 | 65.414 | 133 | 24 | 2 | 2 | 113 | 105 | 236 | 5.35e-54 | 170 |
| Msa1326740 | AT5G08590.1 | 65.414 | 133 | 24 | 2 | 2 | 113 | 181 | 312 | 2.78e-53 | 170 |
| Msa1326740 | AT2G23030.1 | 61.194 | 134 | 29 | 2 | 3 | 113 | 182 | 315 | 1.25e-46 | 153 |
| Msa1326740 | AT4G33950.2 | 47.619 | 126 | 40 | 3 | 1 | 103 | 197 | 319 | 2.58e-31 | 113 |
| Msa1326740 | AT4G33950.1 | 44.444 | 135 | 49 | 3 | 1 | 112 | 197 | 328 | 3.99e-31 | 113 |
| Msa1326740 | AT1G78290.3 | 48.031 | 127 | 39 | 3 | 1 | 106 | 180 | 300 | 5.11e-29 | 107 |
| Msa1326740 | AT1G78290.2 | 48.031 | 127 | 39 | 3 | 1 | 106 | 180 | 300 | 5.11e-29 | 107 |
| Msa1326740 | AT5G66880.1 | 44.776 | 134 | 50 | 3 | 1 | 112 | 198 | 329 | 2.36e-28 | 105 |
| Msa1326740 | AT5G66880.2 | 44.776 | 134 | 50 | 3 | 1 | 112 | 198 | 329 | 2.36e-28 | 105 |
| Msa1326740 | AT3G50500.1 | 44.030 | 134 | 51 | 3 | 1 | 112 | 199 | 330 | 3.14e-28 | 105 |
| Msa1326740 | AT3G50500.2 | 43.609 | 133 | 53 | 2 | 1 | 112 | 206 | 337 | 3.59e-28 | 105 |
| Msa1326740 | AT4G40010.1 | 74.194 | 62 | 16 | 0 | 1 | 62 | 180 | 241 | 2.02e-27 | 103 |
Find 31 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGATATGTGAACATAATC+AGG | 0.310733 | 8_4:+41352233 | None:intergenic |
| TCTAGGCCGGTCAAAGGTTT+TGG | 0.324015 | 8_4:-41351665 | Msa1326740:CDS |
| CTCCAACTAGCATGACATAA+AGG | 0.336939 | 8_4:+41352428 | None:intergenic |
| AAAAGCTTGGGTTGCCTCTC+TGG | 0.343755 | 8_4:+41351750 | None:intergenic |
| CACTTTGAATAGAAAAGCTT+GGG | 0.403772 | 8_4:+41351738 | None:intergenic |
| GAGAACCTCCTCCGGTATCT+AGG | 0.405420 | 8_4:-41351682 | Msa1326740:CDS |
| AGCATATCCCTTTGAGGATC+GGG | 0.410059 | 8_4:-41352407 | Msa1326740:CDS |
| ACCCTTTATGTCATGCTAGT+TGG | 0.433752 | 8_4:-41352430 | Msa1326740:CDS |
| GCTGATTCAATTAGCTCCCT+TGG | 0.435549 | 8_4:+41351788 | None:intergenic |
| ACACTTTGAATAGAAAAGCT+TGG | 0.460081 | 8_4:+41351737 | None:intergenic |
| TAGCAACAAATATACGAGAT+AGG | 0.461711 | 8_4:+41352195 | None:intergenic |
| GACATAAAGGGTCACTCCAC+AGG | 0.502214 | 8_4:+41352441 | None:intergenic |
| TCCAACTAGCATGACATAAA+GGG | 0.508696 | 8_4:+41352429 | None:intergenic |
| CCTTTGACCGGCCTAGATAC+CGG | 0.512013 | 8_4:+41351671 | None:intergenic |
| GAGCATATCCCTTTGAGGAT+CGG | 0.523974 | 8_4:-41352408 | Msa1326740:CDS |
| GATAATGAAAATTGTGGGAG+AGG | 0.536919 | 8_4:-41351708 | Msa1326740:CDS |
| AGTTGGAGCATATCCCTTTG+AGG | 0.541202 | 8_4:-41352413 | Msa1326740:CDS |
| GGACGAGATAATGAAAATTG+TGG | 0.541311 | 8_4:-41351714 | Msa1326740:CDS |
| TCCCAGCCAAAACCTTTGAC+CGG | 0.541467 | 8_4:+41351659 | None:intergenic |
| AGGGTCATCCCGATCCTCAA+AGG | 0.547475 | 8_4:+41352399 | None:intergenic |
| ACCTCCTCCGGTATCTAGGC+CGG | 0.548787 | 8_4:-41351678 | Msa1326740:CDS |
| GACGAGATAATGAAAATTGT+GGG | 0.549780 | 8_4:-41351713 | Msa1326740:CDS |
| GGGTCATCCCGATCCTCAAA+GGG | 0.551772 | 8_4:+41352400 | None:intergenic |
| CCGGTATCTAGGCCGGTCAA+AGG | 0.553923 | 8_4:-41351671 | Msa1326740:CDS |
| ACCGGCCTAGATACCGGAGG+AGG | 0.562102 | 8_4:+41351677 | None:intergenic |
| TTGGCTGATGTGTGGTCCTG+TGG | 0.571735 | 8_4:-41352457 | Msa1326740:CDS |
| AGAGGCAAGAGAACCTCCTC+CGG | 0.578941 | 8_4:-41351690 | Msa1326740:CDS |
| GAGATATGTGAACATAATCA+GGG | 0.595221 | 8_4:+41352234 | None:intergenic |
| CAACAAATATACGAGATAGG+AGG | 0.614585 | 8_4:+41352198 | None:intergenic |
| CAAGCTGCATATTACCAGAG+AGG | 0.690799 | 8_4:-41351764 | Msa1326740:CDS |
| TTGACCGGCCTAGATACCGG+AGG | 0.733082 | 8_4:+41351674 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTCATAAAATTTCTA+GGG | + | chr8_4:41351738-41351757 | None:intergenic | 15.0% |
| !!! | ATTGTTTTCATAAAATTTCT+AGG | + | chr8_4:41351739-41351758 | None:intergenic | 15.0% |
| !!! | TTGTTTTCATAAAATTTCTA+GGG | + | chr8_4:41351738-41351757 | None:intergenic | 15.0% |
| !!! | ATTGTTTTCATAAAATTTCT+AGG | + | chr8_4:41351739-41351758 | None:intergenic | 15.0% |
| !!! | AAATTTTATGAAAACAATCC+AGG | - | chr8_4:41351741-41351760 | Msa1326740:CDS | 20.0% |
| !!! | ATTTTTCTATTGTTACAGTA+TGG | - | chr8_4:41351984-41352003 | Msa1326740:intron | 20.0% |
| !!! | AAATTTTATGAAAACAATCC+AGG | - | chr8_4:41351741-41351760 | Msa1326740:CDS | 20.0% |
| !!! | ATTTTTCTATTGTTACAGTA+TGG | - | chr8_4:41351984-41352003 | Msa1326740:intron | 20.0% |
| !! | TATTTGTTGCTAATCCATTA+AGG | - | chr8_4:41351931-41351950 | Msa1326740:intron | 25.0% |
| !! | ATTTGTTGCTAATCCATTAA+GGG | - | chr8_4:41351932-41351951 | Msa1326740:intron | 25.0% |
| ! | ATCTATTAGGATTGACTAAT+TGG | + | chr8_4:41352202-41352221 | None:intergenic | 25.0% |
| ! | ATGGCGAAAATAATAAGTTT+GGG | + | chr8_4:41352247-41352266 | None:intergenic | 25.0% |
| ! | AATGGCGAAAATAATAAGTT+TGG | + | chr8_4:41352248-41352267 | None:intergenic | 25.0% |
| !! | GGAAGATTCTTTAAAAACTA+TGG | + | chr8_4:41352309-41352328 | None:intergenic | 25.0% |
| !!! | AGTTTTTAAAGAATCTTCCA+AGG | - | chr8_4:41352310-41352329 | Msa1326740:intron | 25.0% |
| !!! | GTTTTTAAAGAATCTTCCAA+GGG | - | chr8_4:41352311-41352330 | Msa1326740:intron | 25.0% |
| !! | TATTTGTTGCTAATCCATTA+AGG | - | chr8_4:41351931-41351950 | Msa1326740:intron | 25.0% |
| !! | ATTTGTTGCTAATCCATTAA+GGG | - | chr8_4:41351932-41351951 | Msa1326740:intron | 25.0% |
| ! | ATCTATTAGGATTGACTAAT+TGG | + | chr8_4:41352202-41352221 | None:intergenic | 25.0% |
| ! | ATGGCGAAAATAATAAGTTT+GGG | + | chr8_4:41352247-41352266 | None:intergenic | 25.0% |
| ! | AATGGCGAAAATAATAAGTT+TGG | + | chr8_4:41352248-41352267 | None:intergenic | 25.0% |
| !! | GGAAGATTCTTTAAAAACTA+TGG | + | chr8_4:41352309-41352328 | None:intergenic | 25.0% |
| !!! | AGTTTTTAAAGAATCTTCCA+AGG | - | chr8_4:41352310-41352329 | Msa1326740:intron | 25.0% |
| !!! | GTTTTTAAAGAATCTTCCAA+GGG | - | chr8_4:41352311-41352330 | Msa1326740:intron | 25.0% |
| CTGCAAAAGAAGATATGAAA+TGG | + | chr8_4:41351835-41351854 | None:intergenic | 30.0% | |
| GAGATATGTGAACATAATCA+GGG | + | chr8_4:41351884-41351903 | None:intergenic | 30.0% | |
| TGAGATATGTGAACATAATC+AGG | + | chr8_4:41351885-41351904 | None:intergenic | 30.0% | |
| TAGCAACAAATATACGAGAT+AGG | + | chr8_4:41351923-41351942 | None:intergenic | 30.0% | |
| TCATCAAAACATACCCTTAA+TGG | + | chr8_4:41351948-41351967 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCATAAGCTATCT+TGG | - | chr8_4:41352072-41352091 | Msa1326740:intron | 30.0% |
| TAAGAACTTGTGAGATTGTT+TGG | + | chr8_4:41352163-41352182 | None:intergenic | 30.0% | |
| AACAATCTCACAAGTTCTTA+CGG | - | chr8_4:41352163-41352182 | Msa1326740:intron | 30.0% | |
| CGATAAACAATGGATCTATT+AGG | + | chr8_4:41352215-41352234 | None:intergenic | 30.0% | |
| CACTTTGAATAGAAAAGCTT+GGG | + | chr8_4:41352380-41352399 | None:intergenic | 30.0% | |
| ACACTTTGAATAGAAAAGCT+TGG | + | chr8_4:41352381-41352400 | None:intergenic | 30.0% | |
| ! | AAGCTTTTCTATTCAAAGTG+TGG | - | chr8_4:41352380-41352399 | Msa1326740:CDS | 30.0% |
| GACGAGATAATGAAAATTGT+GGG | - | chr8_4:41352402-41352421 | Msa1326740:CDS | 30.0% | |
| CTGCAAAAGAAGATATGAAA+TGG | + | chr8_4:41351835-41351854 | None:intergenic | 30.0% | |
| GAGATATGTGAACATAATCA+GGG | + | chr8_4:41351884-41351903 | None:intergenic | 30.0% | |
| TGAGATATGTGAACATAATC+AGG | + | chr8_4:41351885-41351904 | None:intergenic | 30.0% | |
| TAGCAACAAATATACGAGAT+AGG | + | chr8_4:41351923-41351942 | None:intergenic | 30.0% | |
| TCATCAAAACATACCCTTAA+TGG | + | chr8_4:41351948-41351967 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCATAAGCTATCT+TGG | - | chr8_4:41352072-41352091 | Msa1326740:intron | 30.0% |
| TAAGAACTTGTGAGATTGTT+TGG | + | chr8_4:41352163-41352182 | None:intergenic | 30.0% | |
| AACAATCTCACAAGTTCTTA+CGG | - | chr8_4:41352163-41352182 | Msa1326740:intron | 30.0% | |
| CGATAAACAATGGATCTATT+AGG | + | chr8_4:41352215-41352234 | None:intergenic | 30.0% | |
| CACTTTGAATAGAAAAGCTT+GGG | + | chr8_4:41352380-41352399 | None:intergenic | 30.0% | |
| ACACTTTGAATAGAAAAGCT+TGG | + | chr8_4:41352381-41352400 | None:intergenic | 30.0% | |
| ! | AAGCTTTTCTATTCAAAGTG+TGG | - | chr8_4:41352380-41352399 | Msa1326740:CDS | 30.0% |
| GACGAGATAATGAAAATTGT+GGG | - | chr8_4:41352402-41352421 | Msa1326740:CDS | 30.0% | |
| TCCAACTAGCATGACATAAA+GGG | + | chr8_4:41351689-41351708 | None:intergenic | 35.0% | |
| TGTATGAGATGTAACATACC+TGG | + | chr8_4:41351762-41351781 | None:intergenic | 35.0% | |
| ! | TCTTCTTTTGCAGCTCATAA+TGG | - | chr8_4:41351842-41351861 | Msa1326740:intron | 35.0% |
| CAACAAATATACGAGATAGG+AGG | + | chr8_4:41351920-41351939 | None:intergenic | 35.0% | |
| ATACGTTATTGTGTCATCTC+TGG | - | chr8_4:41352007-41352026 | Msa1326740:intron | 35.0% | |
| AACAAGCTGAAAACCGTTTA+AGG | - | chr8_4:41352107-41352126 | Msa1326740:intron | 35.0% | |
| GCTTATGACATGTCCTTAAA+CGG | + | chr8_4:41352123-41352142 | None:intergenic | 35.0% | |
| GTAGTTAGCTCGATAAACAA+TGG | + | chr8_4:41352225-41352244 | None:intergenic | 35.0% | |
| GGACGAGATAATGAAAATTG+TGG | - | chr8_4:41352401-41352420 | Msa1326740:CDS | 35.0% | |
| GATAATGAAAATTGTGGGAG+AGG | - | chr8_4:41352407-41352426 | Msa1326740:CDS | 35.0% | |
| TCCAACTAGCATGACATAAA+GGG | + | chr8_4:41351689-41351708 | None:intergenic | 35.0% | |
| TGTATGAGATGTAACATACC+TGG | + | chr8_4:41351762-41351781 | None:intergenic | 35.0% | |
| ! | TCTTCTTTTGCAGCTCATAA+TGG | - | chr8_4:41351842-41351861 | Msa1326740:intron | 35.0% |
| CAACAAATATACGAGATAGG+AGG | + | chr8_4:41351920-41351939 | None:intergenic | 35.0% | |
| ATACGTTATTGTGTCATCTC+TGG | - | chr8_4:41352007-41352026 | Msa1326740:intron | 35.0% | |
| AACAAGCTGAAAACCGTTTA+AGG | - | chr8_4:41352107-41352126 | Msa1326740:intron | 35.0% | |
| GCTTATGACATGTCCTTAAA+CGG | + | chr8_4:41352123-41352142 | None:intergenic | 35.0% | |
| GTAGTTAGCTCGATAAACAA+TGG | + | chr8_4:41352225-41352244 | None:intergenic | 35.0% | |
| GGACGAGATAATGAAAATTG+TGG | - | chr8_4:41352401-41352420 | Msa1326740:CDS | 35.0% | |
| GATAATGAAAATTGTGGGAG+AGG | - | chr8_4:41352407-41352426 | Msa1326740:CDS | 35.0% | |
| ACCCTTTATGTCATGCTAGT+TGG | - | chr8_4:41351685-41351704 | Msa1326740:CDS | 40.0% | |
| CTCCAACTAGCATGACATAA+AGG | + | chr8_4:41351690-41351709 | None:intergenic | 40.0% | |
| ! | GAGAAATTCTGTGTCGACAA+TGG | + | chr8_4:41352266-41352285 | None:intergenic | 40.0% |
| TCGACACAGAATTTCTCTCA+AGG | - | chr8_4:41352269-41352288 | Msa1326740:intron | 40.0% | |
| ACCCTTTATGTCATGCTAGT+TGG | - | chr8_4:41351685-41351704 | Msa1326740:CDS | 40.0% | |
| CTCCAACTAGCATGACATAA+AGG | + | chr8_4:41351690-41351709 | None:intergenic | 40.0% | |
| ! | GAGAAATTCTGTGTCGACAA+TGG | + | chr8_4:41352266-41352285 | None:intergenic | 40.0% |
| TCGACACAGAATTTCTCTCA+AGG | - | chr8_4:41352269-41352288 | Msa1326740:intron | 40.0% | |
| AGTTGGAGCATATCCCTTTG+AGG | - | chr8_4:41351702-41351721 | Msa1326740:CDS | 45.0% | |
| ! | GAGCATATCCCTTTGAGGAT+CGG | - | chr8_4:41351707-41351726 | Msa1326740:CDS | 45.0% |
| ! | AGCATATCCCTTTGAGGATC+GGG | - | chr8_4:41351708-41351727 | Msa1326740:CDS | 45.0% |
| ! | GCTGATTCAATTAGCTCCCT+TGG | + | chr8_4:41352330-41352349 | None:intergenic | 45.0% |
| CAAGCTGCATATTACCAGAG+AGG | - | chr8_4:41352351-41352370 | Msa1326740:intron | 45.0% | |
| AGTTGGAGCATATCCCTTTG+AGG | - | chr8_4:41351702-41351721 | Msa1326740:CDS | 45.0% | |
| ! | GAGCATATCCCTTTGAGGAT+CGG | - | chr8_4:41351707-41351726 | Msa1326740:CDS | 45.0% |
| ! | AGCATATCCCTTTGAGGATC+GGG | - | chr8_4:41351708-41351727 | Msa1326740:CDS | 45.0% |
| ! | GCTGATTCAATTAGCTCCCT+TGG | + | chr8_4:41352330-41352349 | None:intergenic | 45.0% |
| CAAGCTGCATATTACCAGAG+AGG | - | chr8_4:41352351-41352370 | Msa1326740:intron | 45.0% | |
| GACATAAAGGGTCACTCCAC+AGG | + | chr8_4:41351677-41351696 | None:intergenic | 50.0% | |
| ! | AAAAGCTTGGGTTGCCTCTC+TGG | + | chr8_4:41352368-41352387 | None:intergenic | 50.0% |
| ! | TCTAGGCCGGTCAAAGGTTT+TGG | - | chr8_4:41352450-41352469 | Msa1326740:CDS | 50.0% |
| TCCCAGCCAAAACCTTTGAC+CGG | + | chr8_4:41352459-41352478 | None:intergenic | 50.0% | |
| GACATAAAGGGTCACTCCAC+AGG | + | chr8_4:41351677-41351696 | None:intergenic | 50.0% | |
| ! | AAAAGCTTGGGTTGCCTCTC+TGG | + | chr8_4:41352368-41352387 | None:intergenic | 50.0% |
| ! | TCTAGGCCGGTCAAAGGTTT+TGG | - | chr8_4:41352450-41352469 | Msa1326740:CDS | 50.0% |
| TCCCAGCCAAAACCTTTGAC+CGG | + | chr8_4:41352459-41352478 | None:intergenic | 50.0% | |
| TTGGCTGATGTGTGGTCCTG+TGG | - | chr8_4:41351658-41351677 | Msa1326740:CDS | 55.0% | |
| GGGTCATCCCGATCCTCAAA+GGG | + | chr8_4:41351718-41351737 | None:intergenic | 55.0% | |
| AGGGTCATCCCGATCCTCAA+AGG | + | chr8_4:41351719-41351738 | None:intergenic | 55.0% | |
| AGAGGCAAGAGAACCTCCTC+CGG | - | chr8_4:41352425-41352444 | Msa1326740:CDS | 55.0% | |
| GAGAACCTCCTCCGGTATCT+AGG | - | chr8_4:41352433-41352452 | Msa1326740:CDS | 55.0% | |
| CCTTTGACCGGCCTAGATAC+CGG | + | chr8_4:41352447-41352466 | None:intergenic | 55.0% | |
| !!! | GCCGGTCAAAGGTTTTGGCT+GGG | - | chr8_4:41352455-41352474 | Msa1326740:CDS | 55.0% |
| TTGGCTGATGTGTGGTCCTG+TGG | - | chr8_4:41351658-41351677 | Msa1326740:CDS | 55.0% | |
| GGGTCATCCCGATCCTCAAA+GGG | + | chr8_4:41351718-41351737 | None:intergenic | 55.0% | |
| AGGGTCATCCCGATCCTCAA+AGG | + | chr8_4:41351719-41351738 | None:intergenic | 55.0% | |
| AGAGGCAAGAGAACCTCCTC+CGG | - | chr8_4:41352425-41352444 | Msa1326740:CDS | 55.0% | |
| GAGAACCTCCTCCGGTATCT+AGG | - | chr8_4:41352433-41352452 | Msa1326740:CDS | 55.0% | |
| CCTTTGACCGGCCTAGATAC+CGG | + | chr8_4:41352447-41352466 | None:intergenic | 55.0% | |
| !!! | GCCGGTCAAAGGTTTTGGCT+GGG | - | chr8_4:41352455-41352474 | Msa1326740:CDS | 55.0% |
| ACCTCCTCCGGTATCTAGGC+CGG | - | chr8_4:41352437-41352456 | Msa1326740:CDS | 60.0% | |
| TTGACCGGCCTAGATACCGG+AGG | + | chr8_4:41352444-41352463 | None:intergenic | 60.0% | |
| CCGGTATCTAGGCCGGTCAA+AGG | - | chr8_4:41352444-41352463 | Msa1326740:CDS | 60.0% | |
| !! | GGCCGGTCAAAGGTTTTGGC+TGG | - | chr8_4:41352454-41352473 | Msa1326740:CDS | 60.0% |
| ACCTCCTCCGGTATCTAGGC+CGG | - | chr8_4:41352437-41352456 | Msa1326740:CDS | 60.0% | |
| TTGACCGGCCTAGATACCGG+AGG | + | chr8_4:41352444-41352463 | None:intergenic | 60.0% | |
| CCGGTATCTAGGCCGGTCAA+AGG | - | chr8_4:41352444-41352463 | Msa1326740:CDS | 60.0% | |
| !! | GGCCGGTCAAAGGTTTTGGC+TGG | - | chr8_4:41352454-41352473 | Msa1326740:CDS | 60.0% |
| ACCGGCCTAGATACCGGAGG+AGG | + | chr8_4:41352441-41352460 | None:intergenic | 65.0% | |
| ACCGGCCTAGATACCGGAGG+AGG | + | chr8_4:41352441-41352460 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 41351658 | 41352479 | 41351658 | ID=Msa1326740;Name=Msa1326740 |
| chr8_4 | mRNA | 41351658 | 41352479 | 41351658 | ID=Msa1326740-mRNA-1;Parent=Msa1326740;Name=Msa1326740-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0.5|0.66|3|0|115 |
| chr8_4 | exon | 41352375 | 41352479 | 41352375 | ID=Msa1326740-mRNA-1:exon:12161;Parent=Msa1326740-mRNA-1 |
| chr8_4 | exon | 41352202 | 41352282 | 41352202 | ID=Msa1326740-mRNA-1:exon:12160;Parent=Msa1326740-mRNA-1 |
| chr8_4 | exon | 41351658 | 41351816 | 41351658 | ID=Msa1326740-mRNA-1:exon:12159;Parent=Msa1326740-mRNA-1 |
| chr8_4 | CDS | 41352375 | 41352479 | 41352375 | ID=Msa1326740-mRNA-1:cds;Parent=Msa1326740-mRNA-1 |
| chr8_4 | CDS | 41352202 | 41352282 | 41352202 | ID=Msa1326740-mRNA-1:cds;Parent=Msa1326740-mRNA-1 |
| chr8_4 | CDS | 41351658 | 41351816 | 41351658 | ID=Msa1326740-mRNA-1:cds;Parent=Msa1326740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
