Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328270 | XP_024636868.1 | 90.432 | 324 | 23 | 1 | 1 | 316 | 1 | 324 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328270 | sp|Q9XIB4|Y1475_ARATH | 37.931 | 116 | 70 | 2 | 15 | 130 | 34 | 147 | 4.19e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328270 | A0A396IHE6 | 90.432 | 324 | 23 | 1 | 1 | 316 | 1 | 324 | 0.0 | 606 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1328270 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328270 | MtrunA17_Chr4g0067431 | 90.432 | 324 | 23 | 1 | 1 | 316 | 1 | 324 | 0.0 | 606 |
| Msa1328270 | MtrunA17_Chr1g0163221 | 65.312 | 320 | 90 | 7 | 1 | 316 | 1 | 303 | 1.22e-128 | 371 |
| Msa1328270 | MtrunA17_Chr6g0467351 | 63.248 | 234 | 66 | 3 | 1 | 223 | 1 | 225 | 9.17e-100 | 293 |
| Msa1328270 | MtrunA17_Chr1g0163061 | 60.755 | 265 | 50 | 4 | 1 | 211 | 1 | 265 | 1.13e-87 | 264 |
| Msa1328270 | MtrunA17_Chr6g0467361 | 66.667 | 87 | 29 | 0 | 225 | 311 | 8 | 94 | 6.69e-38 | 130 |
| Msa1328270 | MtrunA17_Chr1g0163071 | 30.769 | 312 | 176 | 13 | 31 | 316 | 2 | 299 | 3.06e-34 | 127 |
| Msa1328270 | MtrunA17_Chr3g0131891 | 31.715 | 309 | 194 | 9 | 9 | 311 | 13 | 310 | 5.27e-33 | 124 |
| Msa1328270 | MtrunA17_Chr1g0163131 | 32.051 | 312 | 178 | 14 | 10 | 302 | 13 | 309 | 1.17e-31 | 120 |
| Msa1328270 | MtrunA17_Chr7g0233561 | 28.421 | 285 | 194 | 6 | 13 | 289 | 16 | 298 | 9.16e-31 | 118 |
| Msa1328270 | MtrunA17_Chr1g0163251 | 29.642 | 307 | 190 | 12 | 15 | 317 | 9 | 293 | 1.37e-30 | 119 |
| Msa1328270 | MtrunA17_Chr3g0103181 | 32.215 | 298 | 167 | 12 | 13 | 303 | 10 | 279 | 2.29e-30 | 116 |
| Msa1328270 | MtrunA17_Chr8g0390841 | 27.445 | 317 | 199 | 12 | 13 | 312 | 37 | 339 | 1.20e-29 | 118 |
| Msa1328270 | MtrunA17_Chr1g0208771 | 27.333 | 300 | 186 | 11 | 30 | 311 | 12 | 297 | 3.76e-29 | 116 |
| Msa1328270 | MtrunA17_Chr1g0163261 | 29.749 | 279 | 178 | 7 | 15 | 291 | 9 | 271 | 6.25e-29 | 113 |
| Msa1328270 | MtrunA17_Chr1g0163231 | 28.814 | 295 | 177 | 10 | 15 | 302 | 9 | 277 | 7.50e-28 | 110 |
| Msa1328270 | MtrunA17_Chr1g0163181 | 28.896 | 308 | 198 | 12 | 17 | 316 | 11 | 305 | 5.97e-27 | 109 |
| Msa1328270 | MtrunA17_Chr3g0103151 | 38.411 | 151 | 85 | 5 | 13 | 158 | 10 | 157 | 5.17e-26 | 101 |
| Msa1328270 | MtrunA17_Chr1g0163201 | 28.626 | 262 | 177 | 8 | 30 | 289 | 18 | 271 | 1.16e-25 | 105 |
| Msa1328270 | MtrunA17_Chr3g0103191 | 30.522 | 249 | 146 | 8 | 13 | 256 | 10 | 236 | 5.05e-25 | 101 |
| Msa1328270 | MtrunA17_Chr1g0163101 | 33.333 | 171 | 96 | 6 | 10 | 172 | 12 | 172 | 1.09e-23 | 95.9 |
| Msa1328270 | MtrunA17_Chr3g0103171 | 28.777 | 278 | 177 | 8 | 30 | 303 | 5 | 265 | 6.22e-23 | 95.9 |
| Msa1328270 | MtrunA17_Chr7g0233571 | 43.925 | 107 | 59 | 1 | 13 | 119 | 8 | 113 | 2.79e-22 | 93.2 |
| Msa1328270 | MtrunA17_Chr7g0233541 | 27.491 | 291 | 196 | 8 | 31 | 311 | 2 | 287 | 1.48e-21 | 92.8 |
| Msa1328270 | MtrunA17_Chr7g0233521 | 26.042 | 288 | 187 | 7 | 31 | 311 | 2 | 270 | 9.74e-21 | 90.1 |
| Msa1328270 | MtrunA17_Chr7g0233531 | 27.018 | 285 | 188 | 7 | 31 | 311 | 2 | 270 | 1.90e-20 | 89.4 |
| Msa1328270 | MtrunA17_Chr1g0171611 | 26.280 | 293 | 175 | 10 | 15 | 302 | 9 | 265 | 2.63e-20 | 89.4 |
| Msa1328270 | MtrunA17_Chr1g0163081 | 36.290 | 124 | 68 | 4 | 31 | 147 | 6 | 125 | 5.26e-20 | 84.7 |
| Msa1328270 | MtrunA17_Chr1g0162161 | 33.557 | 149 | 85 | 5 | 31 | 172 | 4 | 145 | 3.21e-19 | 83.2 |
| Msa1328270 | MtrunA17_Chr1g0154131 | 27.187 | 320 | 180 | 14 | 13 | 308 | 182 | 472 | 4.45e-19 | 87.4 |
| Msa1328270 | MtrunA17_Chr6g0476181 | 37.607 | 117 | 68 | 4 | 31 | 147 | 2 | 113 | 2.25e-18 | 80.9 |
| Msa1328270 | MtrunA17_Chr1g0163121 | 33.333 | 129 | 75 | 4 | 29 | 150 | 9 | 133 | 5.60e-18 | 79.3 |
| Msa1328270 | MtrunA17_Chr5g0419201 | 30.519 | 154 | 97 | 3 | 15 | 160 | 16 | 167 | 9.06e-18 | 80.1 |
| Msa1328270 | MtrunA17_Chr1g0154151 | 29.496 | 278 | 149 | 12 | 47 | 289 | 36 | 301 | 1.07e-16 | 79.7 |
| Msa1328270 | MtrunA17_Chr1g0163191 | 37.815 | 119 | 66 | 4 | 15 | 132 | 9 | 120 | 3.67e-16 | 74.7 |
| Msa1328270 | MtrunA17_Chr1g0163241 | 35.099 | 151 | 75 | 5 | 15 | 153 | 15 | 154 | 6.65e-16 | 74.3 |
| Msa1328270 | MtrunA17_Chr1g0163141 | 33.813 | 139 | 77 | 5 | 29 | 161 | 9 | 138 | 9.25e-15 | 71.6 |
| Msa1328270 | MtrunA17_Chr1g0154191 | 26.524 | 328 | 180 | 13 | 16 | 289 | 22 | 342 | 1.58e-14 | 73.6 |
| Msa1328270 | MtrunA17_Chr3g0103201 | 28.151 | 238 | 142 | 9 | 74 | 303 | 4 | 220 | 3.75e-14 | 70.5 |
| Msa1328270 | MtrunA17_Chr5g0429931 | 27.341 | 267 | 153 | 9 | 30 | 296 | 10 | 235 | 5.42e-14 | 70.5 |
| Msa1328270 | MtrunA17_Chr3g0077461 | 32.414 | 145 | 89 | 4 | 14 | 150 | 236 | 379 | 5.47e-13 | 69.3 |
| Msa1328270 | MtrunA17_Chr1g0163161 | 40.426 | 94 | 46 | 4 | 43 | 130 | 1 | 90 | 1.32e-12 | 64.3 |
| Msa1328270 | MtrunA17_Chr1g0154111 | 24.148 | 352 | 193 | 17 | 16 | 308 | 26 | 362 | 1.33e-12 | 68.6 |
| Msa1328270 | MtrunA17_Chr4g0009491 | 26.016 | 246 | 137 | 8 | 14 | 258 | 224 | 425 | 1.38e-12 | 68.2 |
| Msa1328270 | MtrunA17_Chr3g0077411 | 25.253 | 297 | 170 | 11 | 1 | 289 | 251 | 503 | 2.51e-12 | 67.4 |
| Msa1328270 | MtrunA17_Chr3g0077411 | 25.939 | 293 | 141 | 11 | 14 | 300 | 24 | 246 | 5.75e-12 | 66.2 |
| Msa1328270 | MtrunA17_Chr3g0077451 | 24.060 | 266 | 146 | 10 | 29 | 291 | 10 | 222 | 6.79e-12 | 64.3 |
| Msa1328270 | MtrunA17_Chr4g0033961 | 31.343 | 134 | 79 | 4 | 15 | 137 | 6 | 137 | 6.83e-12 | 65.9 |
| Msa1328270 | MtrunA17_Chr1g0154171 | 26.300 | 327 | 181 | 14 | 28 | 308 | 35 | 347 | 1.21e-11 | 65.1 |
| Msa1328270 | MtrunA17_Chr1g0154161 | 24.150 | 294 | 180 | 12 | 13 | 289 | 28 | 295 | 2.00e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328270 | AT1G49475.1 | 37.931 | 116 | 70 | 2 | 15 | 130 | 34 | 147 | 4.26e-17 | 78.6 |
| Msa1328270 | AT3G18960.1 | 33.333 | 102 | 67 | 1 | 15 | 116 | 30 | 130 | 5.15e-15 | 73.2 |
| Msa1328270 | AT3G18960.2 | 33.333 | 102 | 67 | 1 | 15 | 116 | 30 | 130 | 5.53e-15 | 72.8 |
| Msa1328270 | AT4G01580.1 | 30.392 | 102 | 70 | 1 | 15 | 116 | 30 | 130 | 1.27e-13 | 68.9 |
| Msa1328270 | AT3G18960.3 | 34.409 | 93 | 60 | 1 | 24 | 116 | 2 | 93 | 3.70e-12 | 64.3 |
Find 39 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGTCTTGATCAACAAAA+AGG | 0.205245 | 8_4:-45900235 | None:intergenic |
| CTTTCTTAATGTATGTCTTT+TGG | 0.214595 | 8_4:-45899656 | None:intergenic |
| ATTTGCAAAATATTTGTCTT+TGG | 0.222298 | 8_4:+45899135 | Msa1328270:CDS |
| ATGCCTTCTCACAAAACTTA+TGG | 0.249309 | 8_4:-45898999 | None:intergenic |
| TTTGGAAGTCTTAGAGTAAC+TGG | 0.261520 | 8_4:-45899040 | None:intergenic |
| GTTTCATAACTTCAAGGATT+TGG | 0.272565 | 8_4:+45899417 | Msa1328270:CDS |
| CTTCATCATCGAAGGGTAAA+AGG | 0.299202 | 8_4:+45899320 | Msa1328270:CDS |
| AATAAGTCACCTTCAAAATA+AGG | 0.303259 | 8_4:-45900440 | None:intergenic |
| GCTCACAATAATTTGAAGTT+AGG | 0.320144 | 8_4:+45900329 | Msa1328270:CDS |
| TTTGCAAAATATTTGTCTTT+GGG | 0.324072 | 8_4:+45899136 | Msa1328270:CDS |
| AAACTAGTGATTATAATGTT+TGG | 0.368567 | 8_4:+45899092 | Msa1328270:CDS |
| GAACCTTAATGAAGGAAAAC+TGG | 0.378032 | 8_4:+45898680 | Msa1328270:CDS |
| TGCCTTCTCACAAAACTTAT+GGG | 0.400918 | 8_4:-45898998 | None:intergenic |
| TTGTTGATCAAGACAGATCA+TGG | 0.419506 | 8_4:+45900240 | Msa1328270:CDS |
| AAGTGGTTGTGATGATCTTA+AGG | 0.427796 | 8_4:+45899560 | Msa1328270:CDS |
| CCAGAGAGAAAATCTTAACT+TGG | 0.431915 | 8_4:-45900400 | None:intergenic |
| TCCAAATATGACCGAAAAGA+AGG | 0.438663 | 8_4:+45899057 | Msa1328270:CDS |
| ATACATTAAGAAAGATATCT+TGG | 0.449671 | 8_4:+45899665 | Msa1328270:CDS |
| TGTTTCTTAGCAAATTCAAT+TGG | 0.465793 | 8_4:-45900182 | None:intergenic |
| CTTCAAAGGAACCTTAATGA+AGG | 0.492605 | 8_4:+45898672 | Msa1328270:CDS |
| TGGAAGGTTTCATAACTTCA+AGG | 0.502505 | 8_4:+45899411 | Msa1328270:CDS |
| AACTTCAAGGATTTGGACAA+TGG | 0.526857 | 8_4:+45899424 | Msa1328270:CDS |
| TGAAGATCCTTCATCATCGA+AGG | 0.533226 | 8_4:+45899312 | Msa1328270:CDS |
| AATATACACTAAGTGGTGGT+TGG | 0.538952 | 8_4:+45900294 | Msa1328270:CDS |
| TTCATCTTCTTAAAATAAGG+TGG | 0.542267 | 8_4:-45899355 | None:intergenic |
| GAACTTGATCATCGGAGTAA+TGG | 0.546118 | 8_4:+45898627 | Msa1328270:CDS |
| TTGCTAAGAAACATCTGCAC+AGG | 0.549108 | 8_4:+45900192 | Msa1328270:CDS |
| AATAATCAATATACACTAAG+TGG | 0.551699 | 8_4:+45900287 | Msa1328270:CDS |
| AAACATCTGCACAGGATGGA+AGG | 0.560035 | 8_4:+45900200 | Msa1328270:CDS |
| CTCTTCAATGTGATTGTATG+CGG | 0.570958 | 8_4:+45899199 | Msa1328270:CDS |
| TTTATGCTGAACAAATGCAA+AGG | 0.583910 | 8_4:+45900365 | Msa1328270:CDS |
| CTTCTAAAGAACTTGATCAT+CGG | 0.594078 | 8_4:+45898619 | Msa1328270:CDS |
| GAAGATCCTTCATCATCGAA+GGG | 0.615664 | 8_4:+45899313 | Msa1328270:CDS |
| AACTAACGAAGAATATGAAG+AGG | 0.623129 | 8_4:+45899258 | Msa1328270:CDS |
| TTTGTGAGAAGGCATTGGCA+AGG | 0.630866 | 8_4:+45899007 | Msa1328270:CDS |
| CGAAGAAATCCTTATCAGAG+TGG | 0.639902 | 8_4:-45899623 | None:intergenic |
| TAAGAAACATCTGCACAGGA+TGG | 0.647638 | 8_4:+45900196 | Msa1328270:CDS |
| AATCAATATACACTAAGTGG+TGG | 0.647702 | 8_4:+45900290 | Msa1328270:CDS |
| GTGATTGTATGCGGTAAATG+CGG | 0.696593 | 8_4:+45899208 | Msa1328270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTAATTGCAAAATT+AGG | + | chr8_4:45898737-45898756 | Msa1328270:intron | 10.0% |
| !! | AAATATTAATTGCAAAATTA+GGG | + | chr8_4:45898738-45898757 | Msa1328270:intron | 10.0% |
| !!! | ATTTTTTCATCTTATTTTTT+AGG | + | chr8_4:45899491-45899510 | Msa1328270:intron | 10.0% |
| !! | TAAGAAATAATATAACAAAA+TGG | - | chr8_4:45899966-45899985 | None:intergenic | 10.0% |
| !! | TAAATATTAATTGCAAAATT+AGG | + | chr8_4:45898737-45898756 | Msa1328270:intron | 10.0% |
| !! | AAATATTAATTGCAAAATTA+GGG | + | chr8_4:45898738-45898757 | Msa1328270:intron | 10.0% |
| !!! | ATTTTTTCATCTTATTTTTT+AGG | + | chr8_4:45899491-45899510 | Msa1328270:intron | 10.0% |
| !! | TAAGAAATAATATAACAAAA+TGG | - | chr8_4:45899966-45899985 | None:intergenic | 10.0% |
| !!! | ATTTTCATCTTCTTAAAATA+AGG | - | chr8_4:45899361-45899380 | None:intergenic | 15.0% |
| !! | TATGAATGTTAAAAAAACAA+TGG | + | chr8_4:45899742-45899761 | Msa1328270:intron | 15.0% |
| !!! | GTTATATTATTTCTTAGAAT+TGG | + | chr8_4:45899970-45899989 | Msa1328270:intron | 15.0% |
| !!! | TAAAAACAATGATCTAAAAT+AGG | + | chr8_4:45900154-45900173 | Msa1328270:intron | 15.0% |
| !!! | AAAAACAATGATCTAAAATA+GGG | + | chr8_4:45900155-45900174 | Msa1328270:intron | 15.0% |
| !! | AGATGATAATAGAAAAATAA+TGG | - | chr8_4:45900472-45900491 | None:intergenic | 15.0% |
| !! | CATTAATGAATTAATTATGT+TGG | + | chr8_4:45900739-45900758 | Msa1328270:intron | 15.0% |
| !!! | ATTTTCATCTTCTTAAAATA+AGG | - | chr8_4:45899361-45899380 | None:intergenic | 15.0% |
| !! | TATGAATGTTAAAAAAACAA+TGG | + | chr8_4:45899742-45899761 | Msa1328270:intron | 15.0% |
| !!! | GTTATATTATTTCTTAGAAT+TGG | + | chr8_4:45899970-45899989 | Msa1328270:intron | 15.0% |
| !!! | TAAAAACAATGATCTAAAAT+AGG | + | chr8_4:45900154-45900173 | Msa1328270:intron | 15.0% |
| !!! | AAAAACAATGATCTAAAATA+GGG | + | chr8_4:45900155-45900174 | Msa1328270:intron | 15.0% |
| !! | AGATGATAATAGAAAAATAA+TGG | - | chr8_4:45900472-45900491 | None:intergenic | 15.0% |
| !! | CATTAATGAATTAATTATGT+TGG | + | chr8_4:45900739-45900758 | Msa1328270:intron | 15.0% |
| !!! | TTTTCAAGATTATTCTTCAA+AGG | + | chr8_4:45898658-45898677 | Msa1328270:CDS | 20.0% |
| !! | AAACTAGTGATTATAATGTT+TGG | + | chr8_4:45899092-45899111 | Msa1328270:CDS | 20.0% |
| !! | ATTTGCAAAATATTTGTCTT+TGG | + | chr8_4:45899135-45899154 | Msa1328270:CDS | 20.0% |
| !! | TTTGCAAAATATTTGTCTTT+GGG | + | chr8_4:45899136-45899155 | Msa1328270:CDS | 20.0% |
| !!! | TCTTCGTTAGTTTTTTTTAA+AGG | - | chr8_4:45899250-45899269 | None:intergenic | 20.0% |
| !! | ATACATTAAGAAAGATATCT+TGG | + | chr8_4:45899665-45899684 | Msa1328270:CDS | 20.0% |
| !! | ACATTATAGCATAACTTTAT+TGG | - | chr8_4:45899856-45899875 | None:intergenic | 20.0% |
| !!! | TCATTTTGTATACTATTTCT+TGG | + | chr8_4:45899875-45899894 | Msa1328270:intron | 20.0% |
| !! | AATAATCAATATACACTAAG+TGG | + | chr8_4:45900287-45900306 | Msa1328270:CDS | 20.0% |
| !!! | TACTGCAACATTTTTTTTAA+TGG | + | chr8_4:45900643-45900662 | Msa1328270:intron | 20.0% |
| !!! | TTTTCAAGATTATTCTTCAA+AGG | + | chr8_4:45898658-45898677 | Msa1328270:CDS | 20.0% |
| !! | AAACTAGTGATTATAATGTT+TGG | + | chr8_4:45899092-45899111 | Msa1328270:CDS | 20.0% |
| !! | ATTTGCAAAATATTTGTCTT+TGG | + | chr8_4:45899135-45899154 | Msa1328270:CDS | 20.0% |
| !! | TTTGCAAAATATTTGTCTTT+GGG | + | chr8_4:45899136-45899155 | Msa1328270:CDS | 20.0% |
| !!! | TCTTCGTTAGTTTTTTTTAA+AGG | - | chr8_4:45899250-45899269 | None:intergenic | 20.0% |
| !! | ATACATTAAGAAAGATATCT+TGG | + | chr8_4:45899665-45899684 | Msa1328270:CDS | 20.0% |
| !! | ACATTATAGCATAACTTTAT+TGG | - | chr8_4:45899856-45899875 | None:intergenic | 20.0% |
| !!! | TCATTTTGTATACTATTTCT+TGG | + | chr8_4:45899875-45899894 | Msa1328270:intron | 20.0% |
| !! | AATAATCAATATACACTAAG+TGG | + | chr8_4:45900287-45900306 | Msa1328270:CDS | 20.0% |
| !!! | TACTGCAACATTTTTTTTAA+TGG | + | chr8_4:45900643-45900662 | Msa1328270:intron | 20.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | - | chr8_4:45898656-45898675 | None:intergenic | 25.0% |
| !!! | TATAATGTTTGGTTTTGCAA+TGG | + | chr8_4:45899103-45899122 | Msa1328270:CDS | 25.0% |
| ! | TTCATCTTCTTAAAATAAGG+TGG | - | chr8_4:45899358-45899377 | None:intergenic | 25.0% |
| ! | GAACAAAAAGAATCTAAACA+TGG | + | chr8_4:45899391-45899410 | Msa1328270:CDS | 25.0% |
| ! | AAAAAGAATCTAAACATGGA+AGG | + | chr8_4:45899395-45899414 | Msa1328270:CDS | 25.0% |
| !! | CTTTCTTAATGTATGTCTTT+TGG | - | chr8_4:45899659-45899678 | None:intergenic | 25.0% |
| ! | GCATTATAGTATAACTTTAG+TGG | - | chr8_4:45899944-45899963 | None:intergenic | 25.0% |
| ! | ACAAATACAAAAAGGCTAAA+TGG | - | chr8_4:45900103-45900122 | None:intergenic | 25.0% |
| ! | ACTCAGAAACAAATACAAAA+AGG | - | chr8_4:45900111-45900130 | None:intergenic | 25.0% |
| ! | TGTTTCTTAGCAAATTCAAT+TGG | - | chr8_4:45900185-45900204 | None:intergenic | 25.0% |
| ! | AATAAGTCACCTTCAAAATA+AGG | - | chr8_4:45900443-45900462 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAAATAGTGTTG+AGG | - | chr8_4:45900551-45900570 | None:intergenic | 25.0% |
| ! | GTAAACCAATAAACTTCATA+AGG | + | chr8_4:45900768-45900787 | Msa1328270:intron | 25.0% |
| ! | AGTTTCCTTATGAAGTTTAT+TGG | - | chr8_4:45900776-45900795 | None:intergenic | 25.0% |
| !!! | TTTCAGGTTACAATTTCAAA+AGG | + | chr8_4:45900887-45900906 | Msa1328270:intron | 25.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | - | chr8_4:45898656-45898675 | None:intergenic | 25.0% |
| !!! | TATAATGTTTGGTTTTGCAA+TGG | + | chr8_4:45899103-45899122 | Msa1328270:CDS | 25.0% |
| ! | TTCATCTTCTTAAAATAAGG+TGG | - | chr8_4:45899358-45899377 | None:intergenic | 25.0% |
| ! | GAACAAAAAGAATCTAAACA+TGG | + | chr8_4:45899391-45899410 | Msa1328270:CDS | 25.0% |
| ! | AAAAAGAATCTAAACATGGA+AGG | + | chr8_4:45899395-45899414 | Msa1328270:CDS | 25.0% |
| !! | CTTTCTTAATGTATGTCTTT+TGG | - | chr8_4:45899659-45899678 | None:intergenic | 25.0% |
| ! | GCATTATAGTATAACTTTAG+TGG | - | chr8_4:45899944-45899963 | None:intergenic | 25.0% |
| ! | ACAAATACAAAAAGGCTAAA+TGG | - | chr8_4:45900103-45900122 | None:intergenic | 25.0% |
| ! | ACTCAGAAACAAATACAAAA+AGG | - | chr8_4:45900111-45900130 | None:intergenic | 25.0% |
| ! | TGTTTCTTAGCAAATTCAAT+TGG | - | chr8_4:45900185-45900204 | None:intergenic | 25.0% |
| ! | AATAAGTCACCTTCAAAATA+AGG | - | chr8_4:45900443-45900462 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAAATAGTGTTG+AGG | - | chr8_4:45900551-45900570 | None:intergenic | 25.0% |
| ! | GTAAACCAATAAACTTCATA+AGG | + | chr8_4:45900768-45900787 | Msa1328270:intron | 25.0% |
| ! | AGTTTCCTTATGAAGTTTAT+TGG | - | chr8_4:45900776-45900795 | None:intergenic | 25.0% |
| !!! | TTTCAGGTTACAATTTCAAA+AGG | + | chr8_4:45900887-45900906 | Msa1328270:intron | 25.0% |
| ! | CTTCTAAAGAACTTGATCAT+CGG | + | chr8_4:45898619-45898638 | Msa1328270:CDS | 30.0% |
| ! | TTACCAGTTTTCCTTCATTA+AGG | - | chr8_4:45898686-45898705 | None:intergenic | 30.0% |
| AACTAACGAAGAATATGAAG+AGG | + | chr8_4:45899258-45899277 | Msa1328270:CDS | 30.0% | |
| GTTTCATAACTTCAAGGATT+TGG | + | chr8_4:45899417-45899436 | Msa1328270:CDS | 30.0% | |
| !!! | GAATTTTTTCCACTCTGATA+AGG | + | chr8_4:45899614-45899633 | Msa1328270:CDS | 30.0% |
| TCTGTCTTGATCAACAAAAA+GGG | - | chr8_4:45900237-45900256 | None:intergenic | 30.0% | |
| ATCTGTCTTGATCAACAAAA+AGG | - | chr8_4:45900238-45900257 | None:intergenic | 30.0% | |
| AATCAATATACACTAAGTGG+TGG | + | chr8_4:45900290-45900309 | Msa1328270:CDS | 30.0% | |
| ! | GCTCACAATAATTTGAAGTT+AGG | + | chr8_4:45900329-45900348 | Msa1328270:CDS | 30.0% |
| TTTATGCTGAACAAATGCAA+AGG | + | chr8_4:45900365-45900384 | Msa1328270:CDS | 30.0% | |
| !!! | ATGAACACTCCTTATTTTGA+AGG | + | chr8_4:45900431-45900450 | Msa1328270:CDS | 30.0% |
| TACTAAGTGGTAAATACAAG+AGG | - | chr8_4:45900625-45900644 | None:intergenic | 30.0% | |
| AAAAATGTTGCAGTACTAAG+TGG | - | chr8_4:45900638-45900657 | None:intergenic | 30.0% | |
| TGAATTAATTATGTTGGTGC+AGG | + | chr8_4:45900745-45900764 | Msa1328270:intron | 30.0% | |
| GAATTAATTATGTTGGTGCA+GGG | + | chr8_4:45900746-45900765 | Msa1328270:intron | 30.0% | |
| !!! | TGTTGTTTCATGTTTTGAAC+AGG | + | chr8_4:45900945-45900964 | Msa1328270:intron | 30.0% |
| ! | CTTCTAAAGAACTTGATCAT+CGG | + | chr8_4:45898619-45898638 | Msa1328270:CDS | 30.0% |
| ! | TTACCAGTTTTCCTTCATTA+AGG | - | chr8_4:45898686-45898705 | None:intergenic | 30.0% |
| AACTAACGAAGAATATGAAG+AGG | + | chr8_4:45899258-45899277 | Msa1328270:CDS | 30.0% | |
| GTTTCATAACTTCAAGGATT+TGG | + | chr8_4:45899417-45899436 | Msa1328270:CDS | 30.0% | |
| !!! | GAATTTTTTCCACTCTGATA+AGG | + | chr8_4:45899614-45899633 | Msa1328270:CDS | 30.0% |
| TCTGTCTTGATCAACAAAAA+GGG | - | chr8_4:45900237-45900256 | None:intergenic | 30.0% | |
| ATCTGTCTTGATCAACAAAA+AGG | - | chr8_4:45900238-45900257 | None:intergenic | 30.0% | |
| AATCAATATACACTAAGTGG+TGG | + | chr8_4:45900290-45900309 | Msa1328270:CDS | 30.0% | |
| ! | GCTCACAATAATTTGAAGTT+AGG | + | chr8_4:45900329-45900348 | Msa1328270:CDS | 30.0% |
| TTTATGCTGAACAAATGCAA+AGG | + | chr8_4:45900365-45900384 | Msa1328270:CDS | 30.0% | |
| !!! | ATGAACACTCCTTATTTTGA+AGG | + | chr8_4:45900431-45900450 | Msa1328270:CDS | 30.0% |
| TACTAAGTGGTAAATACAAG+AGG | - | chr8_4:45900625-45900644 | None:intergenic | 30.0% | |
| AAAAATGTTGCAGTACTAAG+TGG | - | chr8_4:45900638-45900657 | None:intergenic | 30.0% | |
| TGAATTAATTATGTTGGTGC+AGG | + | chr8_4:45900745-45900764 | Msa1328270:intron | 30.0% | |
| GAATTAATTATGTTGGTGCA+GGG | + | chr8_4:45900746-45900765 | Msa1328270:intron | 30.0% | |
| !!! | TGTTGTTTCATGTTTTGAAC+AGG | + | chr8_4:45900945-45900964 | Msa1328270:intron | 30.0% |
| CTTCAAAGGAACCTTAATGA+AGG | + | chr8_4:45898672-45898691 | Msa1328270:CDS | 35.0% | |
| GAACCTTAATGAAGGAAAAC+TGG | + | chr8_4:45898680-45898699 | Msa1328270:CDS | 35.0% | |
| AGGTCGTAAACTAGATTTCA+CGG | - | chr8_4:45898776-45898795 | None:intergenic | 35.0% | |
| ! | GAAATCTAGTTTACGACCTT+TGG | + | chr8_4:45898777-45898796 | Msa1328270:intron | 35.0% |
| TGCCTTCTCACAAAACTTAT+GGG | - | chr8_4:45899001-45899020 | None:intergenic | 35.0% | |
| ATGCCTTCTCACAAAACTTA+TGG | - | chr8_4:45899002-45899021 | None:intergenic | 35.0% | |
| !! | TAAGTTTTGTGAGAAGGCAT+TGG | + | chr8_4:45899002-45899021 | Msa1328270:CDS | 35.0% |
| TTTGGAAGTCTTAGAGTAAC+TGG | - | chr8_4:45899043-45899062 | None:intergenic | 35.0% | |
| TCCAAATATGACCGAAAAGA+AGG | + | chr8_4:45899057-45899076 | Msa1328270:CDS | 35.0% | |
| ! | ACCTTCTTTTCGGTCATATT+TGG | - | chr8_4:45899061-45899080 | None:intergenic | 35.0% |
| !!! | TGACCGAAAAGAAGGTTTTT+TGG | + | chr8_4:45899065-45899084 | Msa1328270:CDS | 35.0% |
| !!! | GACCGAAAAGAAGGTTTTTT+GGG | + | chr8_4:45899066-45899085 | Msa1328270:CDS | 35.0% |
| ! | CTCCCAAAAAACCTTCTTTT+CGG | - | chr8_4:45899071-45899090 | None:intergenic | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | + | chr8_4:45899107-45899126 | Msa1328270:CDS | 35.0% |
| CTCTTCAATGTGATTGTATG+CGG | + | chr8_4:45899199-45899218 | Msa1328270:CDS | 35.0% | |
| TGGAAGGTTTCATAACTTCA+AGG | + | chr8_4:45899411-45899430 | Msa1328270:CDS | 35.0% | |
| AACTTCAAGGATTTGGACAA+TGG | + | chr8_4:45899424-45899443 | Msa1328270:CDS | 35.0% | |
| TTTGCCAAATTCTCAGTAAG+TGG | + | chr8_4:45899543-45899562 | Msa1328270:intron | 35.0% | |
| ACAACCACTTACTGAGAATT+TGG | - | chr8_4:45899550-45899569 | None:intergenic | 35.0% | |
| AAGTGGTTGTGATGATCTTA+AGG | + | chr8_4:45899560-45899579 | Msa1328270:CDS | 35.0% | |
| TTGTTGATCAAGACAGATCA+TGG | + | chr8_4:45900240-45900259 | Msa1328270:CDS | 35.0% | |
| AATATACACTAAGTGGTGGT+TGG | + | chr8_4:45900294-45900313 | Msa1328270:CDS | 35.0% | |
| CCAGAGAGAAAATCTTAACT+TGG | - | chr8_4:45900403-45900422 | None:intergenic | 35.0% | |
| ! | CCAAGTTAAGATTTTCTCTC+TGG | + | chr8_4:45900400-45900419 | Msa1328270:CDS | 35.0% |
| TGGCGATACTTGTTTATTGA+AGG | + | chr8_4:45900841-45900860 | Msa1328270:intron | 35.0% | |
| CGATACTTGTTTATTGAAGG+TGG | + | chr8_4:45900844-45900863 | Msa1328270:intron | 35.0% | |
| ! | GAAATACCAGTGTTTTCTCA+TGG | - | chr8_4:45900871-45900890 | None:intergenic | 35.0% |
| TGAGAAAACACTGGTATTTC+AGG | + | chr8_4:45900871-45900890 | Msa1328270:intron | 35.0% | |
| CTTCAAAGGAACCTTAATGA+AGG | + | chr8_4:45898672-45898691 | Msa1328270:CDS | 35.0% | |
| GAACCTTAATGAAGGAAAAC+TGG | + | chr8_4:45898680-45898699 | Msa1328270:CDS | 35.0% | |
| AGGTCGTAAACTAGATTTCA+CGG | - | chr8_4:45898776-45898795 | None:intergenic | 35.0% | |
| ! | GAAATCTAGTTTACGACCTT+TGG | + | chr8_4:45898777-45898796 | Msa1328270:intron | 35.0% |
| TGCCTTCTCACAAAACTTAT+GGG | - | chr8_4:45899001-45899020 | None:intergenic | 35.0% | |
| ATGCCTTCTCACAAAACTTA+TGG | - | chr8_4:45899002-45899021 | None:intergenic | 35.0% | |
| !! | TAAGTTTTGTGAGAAGGCAT+TGG | + | chr8_4:45899002-45899021 | Msa1328270:CDS | 35.0% |
| TTTGGAAGTCTTAGAGTAAC+TGG | - | chr8_4:45899043-45899062 | None:intergenic | 35.0% | |
| TCCAAATATGACCGAAAAGA+AGG | + | chr8_4:45899057-45899076 | Msa1328270:CDS | 35.0% | |
| ! | ACCTTCTTTTCGGTCATATT+TGG | - | chr8_4:45899061-45899080 | None:intergenic | 35.0% |
| !!! | TGACCGAAAAGAAGGTTTTT+TGG | + | chr8_4:45899065-45899084 | Msa1328270:CDS | 35.0% |
| !!! | GACCGAAAAGAAGGTTTTTT+GGG | + | chr8_4:45899066-45899085 | Msa1328270:CDS | 35.0% |
| ! | CTCCCAAAAAACCTTCTTTT+CGG | - | chr8_4:45899071-45899090 | None:intergenic | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | + | chr8_4:45899107-45899126 | Msa1328270:CDS | 35.0% |
| CTCTTCAATGTGATTGTATG+CGG | + | chr8_4:45899199-45899218 | Msa1328270:CDS | 35.0% | |
| TGGAAGGTTTCATAACTTCA+AGG | + | chr8_4:45899411-45899430 | Msa1328270:CDS | 35.0% | |
| AACTTCAAGGATTTGGACAA+TGG | + | chr8_4:45899424-45899443 | Msa1328270:CDS | 35.0% | |
| TTTGCCAAATTCTCAGTAAG+TGG | + | chr8_4:45899543-45899562 | Msa1328270:intron | 35.0% | |
| ACAACCACTTACTGAGAATT+TGG | - | chr8_4:45899550-45899569 | None:intergenic | 35.0% | |
| AAGTGGTTGTGATGATCTTA+AGG | + | chr8_4:45899560-45899579 | Msa1328270:CDS | 35.0% | |
| TTGTTGATCAAGACAGATCA+TGG | + | chr8_4:45900240-45900259 | Msa1328270:CDS | 35.0% | |
| AATATACACTAAGTGGTGGT+TGG | + | chr8_4:45900294-45900313 | Msa1328270:CDS | 35.0% | |
| CCAGAGAGAAAATCTTAACT+TGG | - | chr8_4:45900403-45900422 | None:intergenic | 35.0% | |
| ! | CCAAGTTAAGATTTTCTCTC+TGG | + | chr8_4:45900400-45900419 | Msa1328270:CDS | 35.0% |
| TGGCGATACTTGTTTATTGA+AGG | + | chr8_4:45900841-45900860 | Msa1328270:intron | 35.0% | |
| CGATACTTGTTTATTGAAGG+TGG | + | chr8_4:45900844-45900863 | Msa1328270:intron | 35.0% | |
| ! | GAAATACCAGTGTTTTCTCA+TGG | - | chr8_4:45900871-45900890 | None:intergenic | 35.0% |
| TGAGAAAACACTGGTATTTC+AGG | + | chr8_4:45900871-45900890 | Msa1328270:intron | 35.0% | |
| GAACTTGATCATCGGAGTAA+TGG | + | chr8_4:45898627-45898646 | Msa1328270:CDS | 40.0% | |
| !! | TGCCCATAAGTTTTGTGAGA+AGG | + | chr8_4:45898996-45899015 | Msa1328270:CDS | 40.0% |
| GTGATTGTATGCGGTAAATG+CGG | + | chr8_4:45899208-45899227 | Msa1328270:CDS | 40.0% | |
| TGAAGATCCTTCATCATCGA+AGG | + | chr8_4:45899312-45899331 | Msa1328270:CDS | 40.0% | |
| GAAGATCCTTCATCATCGAA+GGG | + | chr8_4:45899313-45899332 | Msa1328270:CDS | 40.0% | |
| ! | CTTTTACCCTTCGATGATGA+AGG | - | chr8_4:45899322-45899341 | None:intergenic | 40.0% |
| CTTCATCATCGAAGGGTAAA+AGG | + | chr8_4:45899320-45899339 | Msa1328270:CDS | 40.0% | |
| TCAAGGATTTGGACAATGGT+TGG | + | chr8_4:45899428-45899447 | Msa1328270:intron | 40.0% | |
| CGAAGAAATCCTTATCAGAG+TGG | - | chr8_4:45899626-45899645 | None:intergenic | 40.0% | |
| TTGCTAAGAAACATCTGCAC+AGG | + | chr8_4:45900192-45900211 | Msa1328270:CDS | 40.0% | |
| TAAGAAACATCTGCACAGGA+TGG | + | chr8_4:45900196-45900215 | Msa1328270:CDS | 40.0% | |
| GAACTTGATCATCGGAGTAA+TGG | + | chr8_4:45898627-45898646 | Msa1328270:CDS | 40.0% | |
| !! | TGCCCATAAGTTTTGTGAGA+AGG | + | chr8_4:45898996-45899015 | Msa1328270:CDS | 40.0% |
| GTGATTGTATGCGGTAAATG+CGG | + | chr8_4:45899208-45899227 | Msa1328270:CDS | 40.0% | |
| TGAAGATCCTTCATCATCGA+AGG | + | chr8_4:45899312-45899331 | Msa1328270:CDS | 40.0% | |
| GAAGATCCTTCATCATCGAA+GGG | + | chr8_4:45899313-45899332 | Msa1328270:CDS | 40.0% | |
| ! | CTTTTACCCTTCGATGATGA+AGG | - | chr8_4:45899322-45899341 | None:intergenic | 40.0% |
| CTTCATCATCGAAGGGTAAA+AGG | + | chr8_4:45899320-45899339 | Msa1328270:CDS | 40.0% | |
| TCAAGGATTTGGACAATGGT+TGG | + | chr8_4:45899428-45899447 | Msa1328270:intron | 40.0% | |
| CGAAGAAATCCTTATCAGAG+TGG | - | chr8_4:45899626-45899645 | None:intergenic | 40.0% | |
| TTGCTAAGAAACATCTGCAC+AGG | + | chr8_4:45900192-45900211 | Msa1328270:CDS | 40.0% | |
| TAAGAAACATCTGCACAGGA+TGG | + | chr8_4:45900196-45900215 | Msa1328270:CDS | 40.0% | |
| !! | GTTTACGACCTTTGGAGTGT+AGG | + | chr8_4:45898785-45898804 | Msa1328270:intron | 45.0% |
| CTCATTCACCTACACTCCAA+AGG | - | chr8_4:45898796-45898815 | None:intergenic | 45.0% | |
| GGAGTGTAGGTGAATGAGTA+AGG | + | chr8_4:45898798-45898817 | Msa1328270:intron | 45.0% | |
| !! | TTTGTGAGAAGGCATTGGCA+AGG | + | chr8_4:45899007-45899026 | Msa1328270:CDS | 45.0% |
| AAACATCTGCACAGGATGGA+AGG | + | chr8_4:45900200-45900219 | Msa1328270:CDS | 45.0% | |
| !! | GTTTACGACCTTTGGAGTGT+AGG | + | chr8_4:45898785-45898804 | Msa1328270:intron | 45.0% |
| CTCATTCACCTACACTCCAA+AGG | - | chr8_4:45898796-45898815 | None:intergenic | 45.0% | |
| GGAGTGTAGGTGAATGAGTA+AGG | + | chr8_4:45898798-45898817 | Msa1328270:intron | 45.0% | |
| !! | TTTGTGAGAAGGCATTGGCA+AGG | + | chr8_4:45899007-45899026 | Msa1328270:CDS | 45.0% |
| AAACATCTGCACAGGATGGA+AGG | + | chr8_4:45900200-45900219 | Msa1328270:CDS | 45.0% | |
| !!! | TTTTTAAAATATATTTTGAA+TGG | + | chr8_4:45900578-45900597 | Msa1328270:intron | 5.0% |
| !!! | TTTTTAAAATATATTTTGAA+TGG | + | chr8_4:45900578-45900597 | Msa1328270:intron | 5.0% |
| GCTTGCGATTTGCGAGAAGT+TGG | + | chr8_4:45900821-45900840 | Msa1328270:intron | 50.0% | |
| GGTGGTCCATGAGAAAACAC+TGG | + | chr8_4:45900862-45900881 | Msa1328270:intron | 50.0% | |
| GCTTGCGATTTGCGAGAAGT+TGG | + | chr8_4:45900821-45900840 | Msa1328270:intron | 50.0% | |
| GGTGGTCCATGAGAAAACAC+TGG | + | chr8_4:45900862-45900881 | Msa1328270:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 45898615 | 45900992 | 45898615 | ID=Msa1328270;Name=Msa1328270 |
| chr8_4 | mRNA | 45898615 | 45900992 | 45898615 | ID=Msa1328270-mRNA-1;Parent=Msa1328270;Name=Msa1328270-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.8|1|1|5|0|323 |
| chr8_4 | exon | 45898615 | 45898701 | 45898615 | ID=Msa1328270-mRNA-1:exon:12955;Parent=Msa1328270-mRNA-1 |
| chr8_4 | exon | 45898992 | 45899445 | 45898992 | ID=Msa1328270-mRNA-1:exon:12956;Parent=Msa1328270-mRNA-1 |
| chr8_4 | exon | 45899559 | 45899686 | 45899559 | ID=Msa1328270-mRNA-1:exon:12957;Parent=Msa1328270-mRNA-1 |
| chr8_4 | exon | 45900176 | 45900452 | 45900176 | ID=Msa1328270-mRNA-1:exon:12958;Parent=Msa1328270-mRNA-1 |
| chr8_4 | exon | 45900967 | 45900992 | 45900967 | ID=Msa1328270-mRNA-1:exon:12959;Parent=Msa1328270-mRNA-1 |
| chr8_4 | CDS | 45898615 | 45898701 | 45898615 | ID=Msa1328270-mRNA-1:cds;Parent=Msa1328270-mRNA-1 |
| chr8_4 | CDS | 45898992 | 45899445 | 45898992 | ID=Msa1328270-mRNA-1:cds;Parent=Msa1328270-mRNA-1 |
| chr8_4 | CDS | 45899559 | 45899686 | 45899559 | ID=Msa1328270-mRNA-1:cds;Parent=Msa1328270-mRNA-1 |
| chr8_4 | CDS | 45900176 | 45900452 | 45900176 | ID=Msa1328270-mRNA-1:cds;Parent=Msa1328270-mRNA-1 |
| chr8_4 | CDS | 45900967 | 45900992 | 45900967 | ID=Msa1328270-mRNA-1:cds;Parent=Msa1328270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
