AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1328550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328550 MtrunA17_Chr8g0372121 84.242 330 7 3 1 304 1 311 0.0 553
Msa1328550 MtrunA17_Chr5g0405211 58.310 355 88 11 2 303 4 351 7.30e-122 353
Msa1328550 MtrunA17_Chr4g0018391 47.678 323 102 9 4 269 5 317 3.13e-86 262
Msa1328550 MtrunA17_Chr4g0056541 50.331 302 100 7 4 259 5 302 4.67e-84 257
Msa1328550 MtrunA17_Chr1g0200561 44.412 340 130 11 2 288 15 348 5.52e-78 241
Msa1328550 MtrunA17_Chr5g0398971 47.436 312 107 11 4 267 5 307 1.29e-77 240
Msa1328550 MtrunA17_Chr8g0346001 39.548 354 115 11 3 272 12 350 2.87e-66 213
Msa1328550 MtrunA17_Chr2g0309331 42.951 305 105 12 3 255 7 294 1.12e-63 204
Msa1328550 MtrunA17_Chr4g0017921 57.955 176 47 3 6 156 8 181 7.26e-63 202
Msa1328550 MtrunA17_Chr2g0309891 49.102 167 57 3 1 139 1 167 2.33e-52 175
Msa1328550 MtrunA17_Chr3g0109821 44.149 188 71 3 1 154 1 188 7.31e-52 181
Msa1328550 MtrunA17_Chr6g0481091 44.944 178 71 2 6 156 6 183 4.14e-50 166
Msa1328550 MtrunA17_Chr5g0433781 45.238 168 65 2 1 141 1 168 1.63e-49 174
Msa1328550 MtrunA17_Chr3g0091921 52.318 151 45 2 6 129 16 166 4.61e-49 165
Msa1328550 MtrunA17_Chr4g0060931 48.701 154 52 2 6 132 17 170 3.47e-48 164
Msa1328550 MtrunA17_Chr6g0484441 48.344 151 55 2 2 129 1 151 3.55e-47 161
Msa1328550 MtrunA17_Chr1g0183741 44.199 181 75 4 4 161 8 185 3.75e-47 159
Msa1328550 MtrunA17_Chr6g0453451 49.673 153 50 2 6 131 20 172 5.42e-47 160
Msa1328550 MtrunA17_Chr7g0253011 48.750 160 51 3 6 134 17 176 2.91e-46 160
Msa1328550 MtrunA17_Chr5g0417791 44.068 177 69 3 6 152 3 179 6.24e-46 155
Msa1328550 MtrunA17_Chr3g0130101 35.926 270 135 6 8 242 9 275 7.38e-46 158
Msa1328550 MtrunA17_Chr8g0361731 41.026 195 77 5 2 159 10 203 5.64e-45 157
Msa1328550 MtrunA17_Chr6g0461661 47.826 161 55 3 6 137 18 178 1.27e-44 155
Msa1328550 MtrunA17_Chr2g0316971 47.436 156 53 3 6 132 23 178 1.34e-44 155
Msa1328550 MtrunA17_Chr5g0417001 41.146 192 76 5 2 157 10 200 1.74e-44 155
Msa1328550 MtrunA17_Chr2g0312321 44.199 181 70 5 1 155 6 181 2.64e-44 153
Msa1328550 MtrunA17_Chr5g0400461 48.125 160 52 4 1 129 1 160 8.65e-44 152
Msa1328550 MtrunA17_Chr4g0042561 46.104 154 54 2 6 130 9 162 1.34e-43 150
Msa1328550 MtrunA17_Chr7g0252971 41.040 173 64 3 3 137 5 177 2.92e-43 151
Msa1328550 MtrunA17_Chr7g0214071 45.860 157 63 3 6 140 15 171 3.79e-43 148
Msa1328550 MtrunA17_Chr1g0147421 45.570 158 60 4 3 134 24 181 5.13e-43 151
Msa1328550 MtrunA17_Chr4g0054791 47.170 159 54 3 1 129 1 159 5.47e-43 150
Msa1328550 MtrunA17_Chr3g0139331 46.053 152 57 3 3 129 8 159 5.79e-43 150
Msa1328550 MtrunA17_Chr7g0261411 48.980 147 52 3 4 127 8 154 1.16e-42 148
Msa1328550 MtrunA17_Chr8g0384721 45.570 158 56 3 6 134 7 163 2.74e-42 147
Msa1328550 MtrunA17_Chr3g0124761 45.860 157 56 3 6 134 7 162 3.18e-42 147
Msa1328550 MtrunA17_Chr2g0318081 44.025 159 64 2 1 134 11 169 4.66e-42 148
Msa1328550 MtrunA17_Chr3g0130731 44.586 157 58 3 6 134 7 162 6.04e-42 146
Msa1328550 MtrunA17_Chr7g0217721 55.645 124 39 1 9 116 22 145 1.19e-41 147
Msa1328550 MtrunA17_Chr3g0144271 53.676 136 44 3 3 119 20 155 2.45e-41 148
Msa1328550 MtrunA17_Chr6g0453131 42.236 161 58 3 8 133 17 177 4.09e-41 147
Msa1328550 MtrunA17_Chr2g0318101 43.030 165 56 3 6 132 15 179 6.61e-41 145
Msa1328550 MtrunA17_Chr5g0428991 45.625 160 60 2 6 138 25 184 1.06e-40 149
Msa1328550 MtrunA17_Chr8g0359921 44.231 156 60 2 6 134 14 169 2.92e-40 143
Msa1328550 MtrunA17_Chr8g0364791 45.333 150 55 2 8 130 8 157 4.43e-40 145
Msa1328550 MtrunA17_Chr7g0217711 54.032 124 41 1 9 116 22 145 6.69e-40 137
Msa1328550 MtrunA17_Chr3g0128111 45.946 148 53 2 9 129 45 192 6.87e-40 139
Msa1328550 MtrunA17_Chr1g0197351 38.542 192 83 4 4 161 40 230 1.19e-39 144
Msa1328550 MtrunA17_Chr3g0128151 47.020 151 53 2 6 129 22 172 2.06e-39 145
Msa1328550 MtrunA17_Chr5g0442771 32.550 298 143 9 6 249 18 311 2.95e-39 140
Msa1328550 MtrunA17_Chr4g0047841 48.485 132 50 2 6 119 15 146 7.14e-39 139
Msa1328550 MtrunA17_Chr1g0201021 48.462 130 49 1 8 119 21 150 1.76e-38 142
Msa1328550 MtrunA17_Chr7g0263931 44.516 155 55 3 6 129 11 165 2.69e-38 137
Msa1328550 MtrunA17_Chr2g0326361 31.715 309 155 9 7 259 15 323 1.13e-37 136
Msa1328550 MtrunA17_Chr8g0384201 43.333 150 58 2 8 130 8 157 1.79e-37 139
Msa1328550 MtrunA17_Chr2g0311651 40.828 169 58 4 6 132 21 189 4.82e-37 134
Msa1328550 MtrunA17_Chr2g0311661 40.237 169 59 4 6 132 20 188 4.12e-36 131
Msa1328550 MtrunA17_Chr1g0197361 36.126 191 93 5 8 171 10 198 1.57e-35 134
Msa1328550 MtrunA17_Chr3g0092671 35.514 214 107 6 8 191 7 219 2.97e-35 133
Msa1328550 MtrunA17_Chr4g0038751 42.308 156 67 3 3 135 12 167 1.51e-34 127
Msa1328550 MtrunA17_Chr4g0076731 44.966 149 58 5 5 129 53 201 2.56e-34 129
Msa1328550 MtrunA17_Chr8g0385991 40.000 155 63 3 6 130 14 168 5.11e-33 121
Msa1328550 MtrunA17_Chr3g0131911 41.772 158 59 5 6 130 14 171 4.96e-32 119
Msa1328550 MtrunA17_Chr3g0113001 52.041 98 35 2 51 136 26 123 1.68e-29 114
Msa1328550 MtrunA17_Chr3g0113031 51.515 99 35 2 51 136 1 99 2.10e-29 113
Msa1328550 MtrunA17_Chr4g0026141 44.444 135 53 4 2 114 1 135 5.76e-28 108
Msa1328550 MtrunA17_Chr4g0050701 36.242 149 70 3 6 129 11 159 2.95e-27 105
Msa1328550 MtrunA17_Chr8g0345671 41.379 145 59 5 6 125 11 154 3.04e-27 109
Msa1328550 MtrunA17_Chr8g0345691 42.069 145 58 5 6 125 12 155 1.50e-26 108
Msa1328550 MtrunA17_Chr8g0345711 35.714 168 66 5 1 127 7 173 3.61e-26 101
Msa1328550 MtrunA17_Chr2g0321631 43.939 132 49 5 7 114 5 135 3.77e-26 103
Msa1328550 MtrunA17_Chr2g0321741 32.298 161 82 4 26 162 12 169 1.46e-25 104
Msa1328550 MtrunA17_Chr7g0266701 32.335 167 76 5 6 135 4 170 8.22e-22 92.4
Msa1328550 MtrunA17_Chr8g0345731 37.879 132 59 4 6 114 24 155 4.29e-20 85.5
Msa1328550 MtrunA17_Chr7g0243371 48.529 68 33 1 52 117 26 93 4.64e-18 78.6
Msa1328550 MtrunA17_Chr8g0384351 35.507 138 68 5 6 130 10 139 1.20e-17 79.3
Msa1328550 MtrunA17_Chr8g0345721 32.934 167 56 5 2 113 26 191 1.47e-17 79.7
Msa1328550 MtrunA17_Chr8g0345741 36.923 130 60 4 19 127 4 132 5.04e-17 76.6
Msa1328550 MtrunA17_Chr8g0345701 33.562 146 59 6 4 114 5 147 1.61e-15 73.2
Msa1328550 MtrunA17_Chr3g0130321 28.387 155 81 6 6 141 7 150 1.87e-12 65.5
Msa1328550 MtrunA17_Chr7g0251651 30.597 134 65 4 6 117 18 145 2.53e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328550 AT2G18060.3 53.151 365 106 11 2 304 4 365 2.45e-118 345
Msa1328550 AT2G18060.1 53.151 365 106 11 2 304 4 365 2.45e-118 345
Msa1328550 AT4G36160.2 58.632 307 77 11 3 260 10 315 2.59e-109 322
Msa1328550 AT4G36160.1 58.632 307 77 11 3 260 6 311 2.63e-109 322
Msa1328550 AT4G36160.3 58.632 307 77 11 3 260 6 311 2.63e-109 322
Msa1328550 AT5G66300.1 51.852 297 90 10 4 260 9 292 2.78e-88 266
Msa1328550 AT1G12260.1 46.398 347 102 10 4 267 5 350 8.72e-83 255
Msa1328550 AT1G12260.2 50.502 299 107 8 4 267 5 297 7.17e-80 246
Msa1328550 AT1G62700.1 45.045 333 100 10 4 260 5 330 6.77e-77 240
Msa1328550 AT1G62700.2 45.045 333 100 10 4 260 5 330 6.77e-77 240
Msa1328550 AT5G62380.2 43.648 307 134 6 2 270 1 306 8.06e-75 233
Msa1328550 AT5G62380.1 43.648 307 134 6 2 270 1 306 8.06e-75 233
Msa1328550 AT2G18060.2 48.399 281 98 10 67 304 1 277 8.36e-75 231
Msa1328550 AT1G71930.2 44.211 285 120 7 1 256 4 278 3.54e-70 221
Msa1328550 AT1G71930.1 44.211 285 120 7 1 256 4 278 3.54e-70 221
Msa1328550 AT2G46770.1 43.894 303 97 10 3 257 13 290 8.00e-62 200
Msa1328550 AT1G32770.1 41.447 304 122 6 3 261 13 305 9.67e-62 200
Msa1328550 AT1G33280.1 51.691 207 66 5 6 179 8 213 1.03e-60 196
Msa1328550 AT4G10350.1 59.740 154 34 2 6 131 9 162 2.17e-59 193
Msa1328550 AT3G61910.1 56.548 168 32 2 3 129 8 175 5.15e-59 192
Msa1328550 AT1G79580.3 59.615 156 37 3 6 135 17 172 1.67e-57 189
Msa1328550 AT1G79580.5 59.615 156 37 3 6 135 17 172 1.67e-57 189
Msa1328550 AT1G79580.4 59.615 156 37 3 6 135 17 172 1.67e-57 189
Msa1328550 AT1G79580.2 59.615 156 37 3 6 135 17 172 1.67e-57 189
Msa1328550 AT1G79580.1 59.615 156 37 3 6 135 17 172 1.67e-57 189
Msa1328550 AT3G17730.1 46.707 167 62 2 1 140 1 167 1.55e-50 167
Msa1328550 AT3G18400.1 49.682 157 55 2 2 134 1 157 2.49e-50 169
Msa1328550 AT1G65910.1 49.359 156 52 2 1 129 1 156 4.73e-49 172
Msa1328550 AT5G61430.1 50.993 151 47 2 6 129 16 166 1.62e-48 165
Msa1328550 AT5G39610.1 50.327 153 49 2 6 131 20 172 5.25e-48 162
Msa1328550 AT5G17260.1 44.509 173 67 3 1 145 1 172 1.39e-47 166
Msa1328550 AT5G07680.2 49.669 151 49 2 6 129 3 153 2.96e-47 161
Msa1328550 AT3G03200.1 48.171 164 56 4 1 136 1 163 3.64e-47 165
Msa1328550 AT5G07680.1 49.669 151 49 2 6 129 17 167 4.02e-47 161
Msa1328550 AT2G24430.2 49.020 153 52 3 3 129 13 165 7.91e-47 160
Msa1328550 AT2G24430.1 49.020 153 52 3 3 129 13 165 7.91e-47 160
Msa1328550 AT1G54330.1 49.045 157 56 2 1 133 1 157 8.55e-47 159
Msa1328550 AT5G46590.1 47.977 173 60 5 1 144 1 172 2.71e-46 158
Msa1328550 AT3G29035.1 56.693 127 39 1 6 116 24 150 4.52e-46 158
Msa1328550 AT5G46590.2 55.224 134 41 2 1 115 1 134 6.64e-46 157
Msa1328550 AT1G76420.1 50.980 153 49 3 3 129 19 171 8.52e-46 158
Msa1328550 AT5G18270.2 47.239 163 55 4 6 137 21 183 7.05e-45 155
Msa1328550 AT5G18270.1 47.239 163 55 4 6 137 21 183 7.28e-45 155
Msa1328550 AT3G10490.2 38.636 220 104 6 2 192 23 240 9.63e-45 158
Msa1328550 AT3G15170.1 48.485 165 56 4 3 138 17 181 1.60e-44 154
Msa1328550 AT4G17980.1 52.593 135 44 2 1 115 1 135 1.87e-44 152
Msa1328550 AT1G56010.2 41.294 201 72 5 1 156 14 213 2.30e-44 154
Msa1328550 AT4G17980.2 52.593 135 44 2 1 115 1 135 3.28e-44 152
Msa1328550 AT3G12977.1 45.223 157 60 2 1 131 13 169 5.68e-44 152
Msa1328550 AT3G04060.1 37.407 270 117 11 6 238 20 274 6.57e-44 153
Msa1328550 AT3G10490.1 38.991 218 102 6 2 190 23 238 8.70e-44 150
Msa1328550 AT1G69490.1 43.949 157 59 2 3 130 6 162 2.50e-43 149
Msa1328550 AT3G10480.2 44.311 167 65 4 4 143 25 190 2.77e-43 154
Msa1328550 AT3G10480.1 44.048 168 65 4 4 143 25 191 3.30e-43 154
Msa1328550 AT1G77450.1 45.342 161 59 3 7 139 11 170 5.85e-43 148
Msa1328550 AT5G24590.2 49.367 158 52 4 6 135 13 170 1.35e-42 152
Msa1328550 AT5G53950.1 47.097 155 53 3 6 131 17 171 1.53e-42 150
Msa1328550 AT2G33480.2 46.897 145 57 2 6 130 15 159 3.75e-42 146
Msa1328550 AT5G13180.1 47.973 148 54 3 6 130 14 161 5.46e-42 145
Msa1328550 AT2G33480.1 46.259 147 57 2 6 130 15 161 7.24e-42 145
Msa1328550 AT5G04410.1 42.197 173 72 3 4 149 7 178 8.94e-42 152
Msa1328550 AT5G08790.1 45.283 159 56 3 6 134 7 164 2.71e-41 145
Msa1328550 AT3G15500.1 42.593 162 68 2 1 137 9 170 4.30e-41 145
Msa1328550 AT4G27410.2 43.396 159 65 2 1 134 9 167 4.53e-41 144
Msa1328550 AT5G63790.2 44.654 159 57 3 6 134 60 217 4.72e-41 145
Msa1328550 AT5G63790.1 44.654 159 57 3 6 134 50 207 4.82e-41 145
Msa1328550 AT1G26870.1 41.667 168 62 3 2 133 12 179 6.26e-41 147
Msa1328550 AT3G04070.2 42.945 163 56 3 4 129 8 170 1.11e-40 145
Msa1328550 AT1G01720.1 44.304 158 58 3 6 134 7 163 1.26e-40 143
Msa1328550 AT2G43000.1 44.872 156 60 2 8 137 20 175 1.72e-40 142
Msa1328550 AT4G35580.1 38.776 245 109 10 2 206 6 249 3.11e-40 147
Msa1328550 AT3G49530.2 42.424 165 67 3 6 142 13 177 3.84e-40 145
Msa1328550 AT4G35580.2 38.776 245 109 10 2 206 6 249 3.91e-40 147
Msa1328550 AT4G35580.3 38.776 245 109 10 2 206 6 249 4.19e-40 147
Msa1328550 AT5G39820.1 38.462 182 64 3 3 136 17 198 4.47e-40 143
Msa1328550 AT3G49530.1 43.636 165 65 4 6 142 13 177 7.70e-40 145
Msa1328550 AT1G33060.1 39.683 189 76 4 5 162 23 204 1.08e-39 147
Msa1328550 AT1G33060.2 39.683 189 76 4 5 162 23 204 1.11e-39 147
Msa1328550 AT1G52890.1 41.358 162 70 2 1 137 9 170 1.61e-39 141
Msa1328550 AT3G10500.1 42.308 156 63 2 4 132 7 162 1.97e-39 145
Msa1328550 AT4G28530.1 46.951 164 46 6 6 129 10 172 2.66e-39 141
Msa1328550 AT1G61110.1 42.197 173 61 4 6 140 16 187 2.93e-39 140
Msa1328550 AT3G04070.1 48.872 133 47 2 4 115 8 140 5.46e-39 140
Msa1328550 AT4G27410.3 39.205 176 65 2 1 134 9 184 2.70e-38 137
Msa1328550 AT1G32510.1 33.992 253 113 8 1 207 1 245 3.49e-38 137
Msa1328550 AT3G10480.3 36.816 201 65 4 4 143 25 224 1.23e-37 140
Msa1328550 AT1G34180.3 43.846 130 55 1 8 119 18 147 3.42e-37 137
Msa1328550 AT5G09330.5 42.308 156 63 2 1 129 1 156 3.53e-37 138
Msa1328550 AT5G09330.2 42.308 156 63 2 1 129 1 156 3.53e-37 138
Msa1328550 AT5G09330.4 42.308 156 63 2 1 129 1 156 3.53e-37 138
Msa1328550 AT5G09330.3 42.308 156 63 2 1 129 1 156 3.53e-37 138
Msa1328550 AT5G09330.1 42.308 156 63 2 1 129 1 156 3.53e-37 138
Msa1328550 AT4G10350.2 69.663 89 18 1 52 131 27 115 4.77e-37 134
Msa1328550 AT1G34180.1 43.846 130 55 1 8 119 18 147 1.12e-36 138
Msa1328550 AT2G27300.1 38.182 165 82 3 4 149 12 175 1.98e-36 133
Msa1328550 AT5G64060.1 41.667 156 64 2 1 129 1 156 3.08e-36 133
Msa1328550 AT5G22290.1 42.000 150 67 2 1 130 16 165 7.07e-36 132
Msa1328550 AT2G17040.1 36.041 197 94 4 8 172 8 204 9.52e-36 130
Msa1328550 AT3G15510.1 39.053 169 65 3 10 140 21 189 1.18e-35 132
Msa1328550 AT1G34180.4 40.141 142 55 1 8 119 18 159 2.00e-35 133
Msa1328550 AT1G34190.1 43.077 130 56 1 8 119 18 147 2.10e-35 134
Msa1328550 AT3G12910.1 41.860 172 57 5 8 137 23 193 2.60e-35 129
Msa1328550 AT1G34180.2 40.141 142 55 1 8 119 18 159 5.02e-35 133
Msa1328550 AT2G02450.2 43.624 149 60 4 5 129 50 198 7.58e-35 130
Msa1328550 AT2G02450.1 43.919 148 59 4 6 129 51 198 9.38e-35 130
Msa1328550 AT3G44290.2 38.816 152 73 3 8 140 16 166 1.54e-34 125
Msa1328550 AT3G44290.1 38.816 152 73 3 8 140 16 166 4.79e-34 127
Msa1328550 AT5G61430.2 57.778 90 27 1 51 129 14 103 2.72e-32 121
Msa1328550 AT5G04395.1 41.722 151 55 3 3 120 25 175 2.94e-31 115
Msa1328550 AT1G52880.1 39.024 164 63 3 10 136 21 184 5.14e-31 119
Msa1328550 AT1G56010.1 43.939 132 47 2 52 156 15 146 9.13e-31 116
Msa1328550 AT3G12977.2 53.333 90 32 1 52 131 27 116 6.78e-30 113
Msa1328550 AT1G32870.2 40.909 154 64 3 6 132 10 163 3.63e-29 116
Msa1328550 AT1G32870.1 40.909 154 64 3 6 132 10 163 3.77e-29 116
Msa1328550 AT1G32870.3 45.385 130 55 2 6 119 46 175 5.14e-29 116
Msa1328550 AT2G33480.3 47.727 88 37 1 52 130 17 104 5.03e-25 100
Msa1328550 AT3G10490.4 36.879 141 76 5 63 192 2 140 7.96e-22 94.4
Msa1328550 AT3G10490.3 36.879 141 76 5 63 192 2 140 7.96e-22 94.4
Msa1328550 AT5G64530.1 39.167 120 59 3 6 115 3 118 1.36e-20 87.8
Msa1328550 AT2G43000.2 42.268 97 46 1 51 137 1 97 2.10e-20 87.4
Msa1328550 AT5G64530.2 39.167 120 59 3 6 115 3 118 2.16e-20 86.3
Msa1328550 AT5G22380.1 37.037 135 62 3 2 113 1 135 4.43e-20 87.4
Msa1328550 AT3G44350.1 33.987 153 74 5 9 134 8 160 8.64e-20 84.7
Msa1328550 AT3G44350.2 35.156 128 61 3 9 114 8 135 1.27e-19 86.3
Msa1328550 AT4G01550.1 27.237 257 144 10 9 231 7 254 1.04e-18 86.3
Msa1328550 AT4G01540.1 26.538 260 132 10 1 231 1 230 3.66e-18 84.7
Msa1328550 AT4G01540.2 26.538 260 132 10 1 231 1 230 3.84e-18 84.7
Msa1328550 AT4G01540.3 26.538 260 132 10 1 231 1 230 3.99e-18 84.7
Msa1328550 AT4G01540.4 26.538 260 132 10 1 231 1 230 4.18e-18 84.3
Msa1328550 AT4G01520.1 26.295 251 134 9 7 231 5 230 4.79e-18 83.2
Msa1328550 AT4G28530.2 40.310 129 41 5 6 99 10 137 7.79e-18 82.8
Msa1328550 AT1G02250.1 38.462 130 54 5 7 113 4 130 3.66e-17 81.3
Msa1328550 AT1G02230.1 40.000 130 52 6 7 113 4 130 7.72e-17 80.5
Msa1328550 AT3G04420.2 34.375 128 62 3 7 113 4 130 9.94e-17 79.3
Msa1328550 AT3G04420.1 34.375 128 62 3 7 113 4 130 2.27e-16 79.0
Msa1328550 AT5G50820.1 37.500 128 56 4 6 115 17 138 3.23e-16 75.9
Msa1328550 AT1G01010.1 32.653 147 69 6 9 125 6 152 3.61e-16 79.0
Msa1328550 AT5G22290.2 46.154 65 32 1 69 130 2 66 7.34e-15 73.2
Msa1328550 AT1G02220.1 33.333 129 61 4 6 113 3 127 9.22e-14 71.6
Msa1328550 AT3G56530.1 28.358 134 77 3 5 119 51 184 3.73e-11 63.5

Find 67 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCACTCTTATAGTGAAAA+AGG 0.269311 8_4:-46413351 None:intergenic
AACAATGATGAATTTCAAAA+TGG 0.274289 8_4:+46416827 Msa1328550:CDS
TTGTTATGTTCTGATATTAT+TGG 0.276778 8_4:-46416809 None:intergenic
GAGCTACAATGGCAGGGTTC+TGG 0.317074 8_4:+46414344 Msa1328550:CDS
AAAGAGAGAAAGTGATTGAT+TGG 0.345286 8_4:+46416873 Msa1328550:CDS
TGATGAAGAAAGTGTATTAA+TGG 0.361903 8_4:+46413534 Msa1328550:five_prime_UTR
GACTCCATCATAGAAATATA+TGG 0.383595 8_4:-46413587 None:intergenic
ATTGGATCATGCATGAATAT+AGG 0.391373 8_4:+46414473 Msa1328550:CDS
TCCCTTGCAGGAAGAAGGTT+GGG 0.394830 8_4:+46416502 Msa1328550:intron
TTGTTTGTTCATCATATAAG+TGG 0.428608 8_4:-46416592 None:intergenic
CATGTGTCCCACCTGGATTT+CGG 0.432093 8_4:+46413609 Msa1328550:CDS
GTTCCTACTTCAAAGTAGTA+AGG 0.437560 8_4:+46416973 Msa1328550:CDS
CCAACGGATGGAGAGCTTGT+TGG 0.439284 8_4:+46413638 Msa1328550:CDS
AAAGATAAGAAATATCCAAC+AGG 0.439866 8_4:+46414307 Msa1328550:intron
AGTTGAGTCAAGAAGATCAT+AGG 0.449602 8_4:+46416924 Msa1328550:CDS
TGTTCATCATATAAGTGGCT+TGG 0.450848 8_4:-46416587 None:intergenic
GAGGGATCTTGACAAGTTTG+TGG 0.454746 8_4:+46416895 Msa1328550:CDS
TATGAACGAACAAAACTGAT+TGG 0.456318 8_4:+46414394 Msa1328550:CDS
CATCCTTACTACTTTGAAGT+AGG 0.458330 8_4:-46416976 None:intergenic
ACGAATAGAGCTACAATGGC+AGG 0.459411 8_4:+46414337 Msa1328550:CDS
CTTCATGCATTCAGAACAAA+TGG 0.460408 8_4:+46416733 Msa1328550:CDS
AGTGTTCCCTTGCAGGAAGA+AGG 0.464909 8_4:+46416497 Msa1328550:intron
TGTCTTAAGATGAGGTCAAT+GGG 0.475675 8_4:-46416638 None:intergenic
ATACACCGACTTATCTCTTC+CGG 0.477433 8_4:-46414374 None:intergenic
AATACCATATATTTCTATGA+TGG 0.480060 8_4:+46413583 Msa1328550:exon
CTATTCGTTCTCGTCCCTGT+TGG 0.488529 8_4:-46414322 None:intergenic
TACAAAGGAAGAGCACCTAA+TGG 0.488869 8_4:+46414439 Msa1328550:CDS
AGAGAAAGTGATTGATTGGA+GGG 0.491304 8_4:+46416877 Msa1328550:CDS
CTAATGGACAGAAAACTGAT+TGG 0.497399 8_4:+46414455 Msa1328550:CDS
GCAGGGTTCTGGAAAGCAAC+CGG 0.508647 8_4:+46414355 Msa1328550:CDS
GTTGGGTGGAACCGAAATCC+AGG 0.510577 8_4:-46413620 None:intergenic
TTCCCTTGCAGGAAGAAGGT+TGG 0.510912 8_4:+46416501 Msa1328550:intron
TTGTCTTAAGATGAGGTCAA+TGG 0.515328 8_4:-46416639 None:intergenic
GGTGAGAGATAAAGAGTGTG+AGG 0.518897 8_4:-46413451 None:intergenic
CAACAAGCTCTCCATCCGTT+GGG 0.524228 8_4:-46413637 None:intergenic
TAATATACCTTGGAGATCCC+AGG 0.527193 8_4:-46413741 None:intergenic
ATCTATACCGTATTGAACCC+TGG 0.527609 8_4:+46413723 Msa1328550:CDS
TCTATACCGTATTGAACCCT+GGG 0.534125 8_4:+46413724 Msa1328550:CDS
GAGAGAAAGTGATTGATTGG+AGG 0.538140 8_4:+46416876 Msa1328550:CDS
TTTCGGTTCCACCCAACGGA+TGG 0.543349 8_4:+46413626 Msa1328550:CDS
CCAACAAGCTCTCCATCCGT+TGG 0.549429 8_4:-46413638 None:intergenic
GGACTTTCTAGCTGAGGAAG+AGG 0.549801 8_4:-46416758 None:intergenic
AAACAAGTAGCATCATCTCA+AGG 0.554359 8_4:+46416609 Msa1328550:CDS
ACAAGGTCAGATTGTGACAT+TGG 0.564455 8_4:+46417031 Msa1328550:CDS
AAAGTCCCTCTTTAACAAAG+AGG 0.569473 8_4:+46416774 Msa1328550:CDS
GTGTGAATATGTATGTAGAT+AGG 0.571059 8_4:-46413472 None:intergenic
ATGGAGTCATGTGTCCCACC+TGG 0.583453 8_4:+46413602 Msa1328550:CDS
GAACAAAACTGATTGGAATG+AGG 0.589039 8_4:+46414401 Msa1328550:CDS
TGGATTTCGGTTCCACCCAA+CGG 0.599891 8_4:+46413622 Msa1328550:CDS
GGAGATCCCAGGGTTCAATA+CGG 0.603085 8_4:-46413730 None:intergenic
AACAAGTAGCATCATCTCAA+GGG 0.604193 8_4:+46416610 Msa1328550:CDS
AAAGAGGGACTTTCTAGCTG+AGG 0.604723 8_4:-46416764 None:intergenic
CAAGCTCTCCATCCGTTGGG+TGG 0.610660 8_4:-46413634 None:intergenic
AATATACCTTGGAGATCCCA+GGG 0.622309 8_4:-46413740 None:intergenic
AGCAACCGGAAGAGATAAGT+CGG 0.630743 8_4:+46414369 Msa1328550:CDS
TCTGTGGTTGTCTTAAGATG+AGG 0.635609 8_4:-46416646 None:intergenic
ATTGAACCCTGGGATCTCCA+AGG 0.636482 8_4:+46413734 Msa1328550:CDS
AAGAAAGTGTATTAATGGTG+TGG 0.642690 8_4:+46413539 Msa1328550:five_prime_UTR
CGAATAGAGCTACAATGGCA+GGG 0.643373 8_4:+46414338 Msa1328550:CDS
GAGAACGAATAGAGCTACAA+TGG 0.650530 8_4:+46414333 Msa1328550:CDS
AAGTAGCATCATCTCAAGGG+TGG 0.653779 8_4:+46416613 Msa1328550:CDS
AAAGTGTATTAATGGTGTGG+TGG 0.662263 8_4:+46413542 Msa1328550:five_prime_UTR
GGGTGGAACCGAAATCCAGG+TGG 0.677530 8_4:-46413617 None:intergenic
GTCTTAAGATGAGGTCAATG+GGG 0.688746 8_4:-46416637 None:intergenic
GGTGGAACCGAAATCCAGGT+GGG 0.699498 8_4:-46413616 None:intergenic
AAGATAAGAAATATCCAACA+GGG 0.735024 8_4:+46414308 Msa1328550:intron
TCATCTTAAGACAACCACAG+AGG 0.769996 8_4:+46416648 Msa1328550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTATTTTATTTTATAT+AGG - chr8_4:46415301-46415320 None:intergenic 0.0%
!!! TTATTATTATTTCTTTTTGT+TGG + chr8_4:46413375-46413394 Msa1328550:five_prime_UTR 10.0%
!! TATTTAATTAATTAATCAAG+GGG - chr8_4:46414615-46414634 None:intergenic 10.0%
!!! TAGTTTTTTACTTTTTTTTA+CGG + chr8_4:46415402-46415421 Msa1328550:intron 10.0%
!!! CATTAAAAAAAATCTAATTT+TGG + chr8_4:46415544-46415563 Msa1328550:intron 10.0%
!! AAATGAATAAAAATAAAAGA+AGG - chr8_4:46415598-46415617 None:intergenic 10.0%
!!! TTGTTTAAAACTTTTTAAAT+TGG - chr8_4:46415871-46415890 None:intergenic 10.0%
!!! AATTATCATAAGTTTTTTTT+TGG + chr8_4:46416333-46416352 Msa1328550:intron 10.0%
!! AGAAAAAAATTTAATTCAAA+AGG + chr8_4:46416404-46416423 Msa1328550:intron 10.0%
!! AAAAAAAGTTGAAATATTGA+CGG + chr8_4:46413952-46413971 Msa1328550:intron 15.0%
!!! AAAAGTATACATATATTGAT+AGG + chr8_4:46414211-46414230 Msa1328550:intron 15.0%
!!! CATCATTAGTTTTATTTTTT+AGG + chr8_4:46415066-46415085 Msa1328550:intron 15.0%
!!! TCAACTAAAATGTTTTATTA+TGG + chr8_4:46415150-46415169 Msa1328550:intron 15.0%
!! TCTCTTAAATGTTAATTATT+TGG + chr8_4:46415331-46415350 Msa1328550:intron 15.0%
!!! AAAAAAATGGTTTTTTTTCT+AGG - chr8_4:46415361-46415380 None:intergenic 15.0%
!! ACACAATATATGTAAAAAAA+TGG - chr8_4:46415374-46415393 None:intergenic 15.0%
!!! ATTTTTATTCATTTTAAGGA+TGG + chr8_4:46415604-46415623 Msa1328550:intron 15.0%
!! TAAGTCAAATAAAATACAAT+CGG - chr8_4:46415661-46415680 None:intergenic 15.0%
!! ATTGTGTTAAATTTATCAAT+AGG + chr8_4:46415913-46415932 Msa1328550:intron 15.0%
!! AACAAATACATTAATTAGTT+TGG - chr8_4:46416038-46416057 None:intergenic 15.0%
!!! GTGTTAATAACTTTATTTAA+CGG + chr8_4:46416079-46416098 Msa1328550:intron 15.0%
!! TTATTTAAAGGTGAATATTT+CGG + chr8_4:46416236-46416255 Msa1328550:intron 15.0%
!!! TTTATGTTCTAGTAATTTTT+TGG - chr8_4:46416375-46416394 None:intergenic 15.0%
!!! AATACCATATATTTCTATGA+TGG + chr8_4:46413583-46413602 Msa1328550:exon 20.0%
!! GTAATATAAGTAATATACCT+TGG - chr8_4:46413754-46413773 None:intergenic 20.0%
!! TTTAAACAAGAACACAAAAT+AGG - chr8_4:46414194-46414213 None:intergenic 20.0%
!! TTATAGAAGTCTTGATTTAA+AGG + chr8_4:46414732-46414751 Msa1328550:intron 20.0%
!! TATAGAAGTCTTGATTTAAA+GGG + chr8_4:46414733-46414752 Msa1328550:intron 20.0%
!! AATACTATAAAGTACAACTT+TGG + chr8_4:46414860-46414879 Msa1328550:intron 20.0%
!! TTACGAATATTGTTAATTAG+TGG - chr8_4:46414890-46414909 None:intergenic 20.0%
!!! ATCATCTTTCTTTTACTTTT+TGG + chr8_4:46415016-46415035 Msa1328550:intron 20.0%
!!! CTAAAATGTTTTATTATGGA+TGG + chr8_4:46415154-46415173 Msa1328550:intron 20.0%
!!! GGATTGTATTGTATTTTTAT+TGG + chr8_4:46415423-46415442 Msa1328550:intron 20.0%
!! AAACTTTGCAAAAGTTAAAA+GGG + chr8_4:46415724-46415743 Msa1328550:intron 20.0%
!! AAAGACAATAATTGATTAAG+TGG - chr8_4:46415985-46416004 None:intergenic 20.0%
!! TATTTAAAGGTGAATATTTC+GGG + chr8_4:46416237-46416256 Msa1328550:intron 20.0%
!! AACCCGAATTTAAATTAATT+CGG + chr8_4:46416262-46416281 Msa1328550:intron 20.0%
!! AACCCGAATTAATTTAAATT+CGG - chr8_4:46416268-46416287 None:intergenic 20.0%
!! TTGTTATGTTCTGATATTAT+TGG - chr8_4:46416812-46416831 None:intergenic 20.0%
!! AACAATGATGAATTTCAAAA+TGG + chr8_4:46416827-46416846 Msa1328550:CDS 20.0%
!! TGATGAAGAAAGTGTATTAA+TGG + chr8_4:46413534-46413553 Msa1328550:five_prime_UTR 25.0%
!! TATTTTATGCGTTACTCTAT+AGG - chr8_4:46414118-46414137 None:intergenic 25.0%
! TGTTAAAACCCTAATCAATA+GGG - chr8_4:46414155-46414174 None:intergenic 25.0%
! AAAGATAAGAAATATCCAAC+AGG + chr8_4:46414307-46414326 Msa1328550:intron 25.0%
! AAGATAAGAAATATCCAACA+GGG + chr8_4:46414308-46414327 Msa1328550:intron 25.0%
! TCAACTCAACACATAATATA+TGG - chr8_4:46414554-46414573 None:intergenic 25.0%
! TCAAACTTGATTAGTAACTT+TGG + chr8_4:46414580-46414599 Msa1328550:intron 25.0%
! TTCGTAAATAATATTCACCA+AGG + chr8_4:46414903-46414922 Msa1328550:intron 25.0%
! AATCAGTTGATCTTGATTAA+TGG - chr8_4:46415202-46415221 None:intergenic 25.0%
! AATTCATTCGTTAGAGAATT+AGG - chr8_4:46415265-46415284 None:intergenic 25.0%
!! TTTTATTGGAGTGACAAAAA+AGG + chr8_4:46415437-46415456 Msa1328550:intron 25.0%
! AAAAAACCTTTACCCTTAAA+AGG - chr8_4:46415505-46415524 None:intergenic 25.0%
!! TCATTAGATGATCCTTTTAT+TGG + chr8_4:46415635-46415654 Msa1328550:intron 25.0%
! GAAACTTTGCAAAAGTTAAA+AGG + chr8_4:46415723-46415742 Msa1328550:intron 25.0%
!!! ATGATGTTTTGAATGTGAAA+AGG - chr8_4:46415775-46415794 None:intergenic 25.0%
!! ATTTTAAATATGGAGAAGTG+GGG - chr8_4:46416174-46416193 None:intergenic 25.0%
!! CATTTTAAATATGGAGAAGT+GGG - chr8_4:46416175-46416194 None:intergenic 25.0%
!! ACATTTTAAATATGGAGAAG+TGG - chr8_4:46416176-46416195 None:intergenic 25.0%
!! AAGCTCACACATTTTAAATA+TGG - chr8_4:46416184-46416203 None:intergenic 25.0%
! ACCCGAATTTAAATTAATTC+GGG + chr8_4:46416263-46416282 Msa1328550:intron 25.0%
! ACCCGAATTAATTTAAATTC+GGG - chr8_4:46416267-46416286 None:intergenic 25.0%
! AAGCAAAAACAAATGAAAGA+TGG + chr8_4:46416561-46416580 Msa1328550:CDS 25.0%
! AGCAAAAACAAATGAAAGAT+GGG + chr8_4:46416562-46416581 Msa1328550:CDS 25.0%
! TTGTTTGTTCATCATATAAG+TGG - chr8_4:46416595-46416614 None:intergenic 25.0%
!! TGTTTGTACATGAAATTTTG+AGG - chr8_4:46416680-46416699 None:intergenic 25.0%
!!! TAAGCTCATTTTTAACTACA+AGG + chr8_4:46417014-46417033 Msa1328550:CDS 25.0%
AAGCACTCTTATAGTGAAAA+AGG - chr8_4:46413354-46413373 None:intergenic 30.0%
AGTGAAGCAAAAAGCTAAAA+AGG - chr8_4:46413409-46413428 None:intergenic 30.0%
GTGTGAATATGTATGTAGAT+AGG - chr8_4:46413475-46413494 None:intergenic 30.0%
! AAGAAAGTGTATTAATGGTG+TGG + chr8_4:46413539-46413558 Msa1328550:five_prime_UTR 30.0%
GACTCCATCATAGAAATATA+TGG - chr8_4:46413590-46413609 None:intergenic 30.0%
! TTTGATCAACCCTATTGATT+AGG + chr8_4:46414143-46414162 Msa1328550:intron 30.0%
! TTGATCAACCCTATTGATTA+GGG + chr8_4:46414144-46414163 Msa1328550:intron 30.0%
CTGTTAAAACCCTAATCAAT+AGG - chr8_4:46414156-46414175 None:intergenic 30.0%
TATACAGAGAGATGTAGAAT+TGG + chr8_4:46414247-46414266 Msa1328550:intron 30.0%
ATACAGAGAGATGTAGAATT+GGG + chr8_4:46414248-46414267 Msa1328550:intron 30.0%
TATGAACGAACAAAACTGAT+TGG + chr8_4:46414394-46414413 Msa1328550:CDS 30.0%
ATTGGATCATGCATGAATAT+AGG + chr8_4:46414473-46414492 Msa1328550:CDS 30.0%
TATATGTATATACTTGCCTG+TGG - chr8_4:46414523-46414542 None:intergenic 30.0%
!! CTTGTTTTCTTGTCTGAAAA+AGG - chr8_4:46414666-46414685 None:intergenic 30.0%
!!! CTTTTTCAGACAAGAAAACA+AGG + chr8_4:46414664-46414683 Msa1328550:intron 30.0%
! ACAAGGATGTTTCTATAAGT+TGG + chr8_4:46414681-46414700 Msa1328550:intron 30.0%
GTTTAGTCTAAGCATTTGAT+TGG + chr8_4:46414809-46414828 Msa1328550:intron 30.0%
ACGTTATAAAACGAGTTTAG+AGG - chr8_4:46414837-46414856 None:intergenic 30.0%
AAAAAAGTTTGTACGTACCT+TGG - chr8_4:46414923-46414942 None:intergenic 30.0%
!!! TACGTACAAACTTTTTTGCT+AGG + chr8_4:46414926-46414945 Msa1328550:intron 30.0%
!!! ACGTACAAACTTTTTTGCTA+GGG + chr8_4:46414927-46414946 Msa1328550:intron 30.0%
TATGTGTGTGTATATATGTG+TGG - chr8_4:46415479-46415498 None:intergenic 30.0%
! ACACACATATTGCCTTTTAA+GGG + chr8_4:46415490-46415509 Msa1328550:intron 30.0%
!! ATATTGCCTTTTAAGGGTAA+AGG + chr8_4:46415496-46415515 Msa1328550:intron 30.0%
AAATACAATCGGCCAATAAA+AGG - chr8_4:46415650-46415669 None:intergenic 30.0%
! TTGCAAAGTTTCAGTCTTTT+TGG - chr8_4:46415715-46415734 None:intergenic 30.0%
AGACTTAAATTTAGAGACGA+AGG - chr8_4:46415841-46415860 None:intergenic 30.0%
TGCATAATATATGCAGAAGT+CGG + chr8_4:46416135-46416154 Msa1328550:intron 30.0%
CAAAAGGAGTTTAGAGAAAA+TGG + chr8_4:46416420-46416439 Msa1328550:intron 30.0%
! TTTTGCCTCTTTGTTAAAGA+GGG - chr8_4:46416782-46416801 None:intergenic 30.0%
AAAGAGAGAAAGTGATTGAT+TGG + chr8_4:46416873-46416892 Msa1328550:CDS 30.0%
CACTCTTATAGTGAAAAAGG+TGG - chr8_4:46413351-46413370 None:intergenic 35.0%
AAAGTGTATTAATGGTGTGG+TGG + chr8_4:46413542-46413561 Msa1328550:five_prime_UTR 35.0%
AACCATGTTCAACATAGTGA+TGG + chr8_4:46413817-46413836 Msa1328550:intron 35.0%
TACCATCACTATGTTGAACA+TGG - chr8_4:46413822-46413841 None:intergenic 35.0%
GAACAAAACTGATTGGAATG+AGG + chr8_4:46414401-46414420 Msa1328550:CDS 35.0%
! AAGACACTCGTTTTCTACAA+AGG + chr8_4:46414424-46414443 Msa1328550:CDS 35.0%
! CAATCAGTTTTCTGTCCATT+AGG - chr8_4:46414457-46414476 None:intergenic 35.0%
! CTAATGGACAGAAAACTGAT+TGG + chr8_4:46414455-46414474 Msa1328550:CDS 35.0%
! TATAAGTTGGAGAATGAGCA+TGG + chr8_4:46414694-46414713 Msa1328550:intron 35.0%
GAAAAAGACACATCAAGAGA+AGG - chr8_4:46414779-46414798 None:intergenic 35.0%
!!! AGTGACTTTTGACTTCTTTC+TGG - chr8_4:46414971-46414990 None:intergenic 35.0%
! CACACACATATTGCCTTTTA+AGG + chr8_4:46415489-46415508 Msa1328550:intron 35.0%
!!! AAGGGTAAAGGTTTTTTCTC+AGG + chr8_4:46415508-46415527 Msa1328550:intron 35.0%
TATCAACTGAGTTAAGGTCA+CGG - chr8_4:46416108-46416127 None:intergenic 35.0%
! TGACCTTAACTCAGTTGATA+GGG + chr8_4:46416108-46416127 Msa1328550:intron 35.0%
GCATAATATATGCAGAAGTC+GGG + chr8_4:46416136-46416155 Msa1328550:intron 35.0%
CATAATATATGCAGAAGTCG+GGG + chr8_4:46416137-46416156 Msa1328550:intron 35.0%
TGTTCATCATATAAGTGGCT+TGG - chr8_4:46416590-46416609 None:intergenic 35.0%
AAACAAGTAGCATCATCTCA+AGG + chr8_4:46416609-46416628 Msa1328550:CDS 35.0%
AACAAGTAGCATCATCTCAA+GGG + chr8_4:46416610-46416629 Msa1328550:CDS 35.0%
TGTCTTAAGATGAGGTCAAT+GGG - chr8_4:46416641-46416660 None:intergenic 35.0%
TTGTCTTAAGATGAGGTCAA+TGG - chr8_4:46416642-46416661 None:intergenic 35.0%
CTTCATGCATTCAGAACAAA+TGG + chr8_4:46416733-46416752 Msa1328550:CDS 35.0%
AAAGTCCCTCTTTAACAAAG+AGG + chr8_4:46416774-46416793 Msa1328550:CDS 35.0%
! GTTTTGCCTCTTTGTTAAAG+AGG - chr8_4:46416783-46416802 None:intergenic 35.0%
AGAGAAAGTGATTGATTGGA+GGG + chr8_4:46416877-46416896 Msa1328550:CDS 35.0%
AGTTGAGTCAAGAAGATCAT+AGG + chr8_4:46416924-46416943 Msa1328550:CDS 35.0%
GTTCCTACTTCAAAGTAGTA+AGG + chr8_4:46416973-46416992 Msa1328550:CDS 35.0%
!! CATCCTTACTACTTTGAAGT+AGG - chr8_4:46416979-46416998 None:intergenic 35.0%
ATCTATACCGTATTGAACCC+TGG + chr8_4:46413723-46413742 Msa1328550:CDS 40.0%
TCTATACCGTATTGAACCCT+GGG + chr8_4:46413724-46413743 Msa1328550:CDS 40.0%
AATATACCTTGGAGATCCCA+GGG - chr8_4:46413743-46413762 None:intergenic 40.0%
TAATATACCTTGGAGATCCC+AGG - chr8_4:46413744-46413763 None:intergenic 40.0%
GAGATGTAGAATTGGGAATG+AGG + chr8_4:46414255-46414274 Msa1328550:intron 40.0%
GAGAACGAATAGAGCTACAA+TGG + chr8_4:46414333-46414352 Msa1328550:CDS 40.0%
!! ATACACCGACTTATCTCTTC+CGG - chr8_4:46414377-46414396 None:intergenic 40.0%
!! TACAAAGGAAGAGCACCTAA+TGG + chr8_4:46414439-46414458 Msa1328550:CDS 40.0%
ATGTATATACTTGCCTGTGG+AGG - chr8_4:46414520-46414539 None:intergenic 40.0%
!!! GGTTAGAGAGTTTTGAAGAG+AGG + chr8_4:46415087-46415106 Msa1328550:intron 40.0%
ATCAACTGAGTTAAGGTCAC+GGG - chr8_4:46416107-46416126 None:intergenic 40.0%
GTGACCTTAACTCAGTTGAT+AGG + chr8_4:46416107-46416126 Msa1328550:intron 40.0%
TGTCCCTATCAACTGAGTTA+AGG - chr8_4:46416114-46416133 None:intergenic 40.0%
TAAATTGAGTGTTCCCTTGC+AGG + chr8_4:46416490-46416509 Msa1328550:intron 40.0%
GTCTTAAGATGAGGTCAATG+GGG - chr8_4:46416640-46416659 None:intergenic 40.0%
TCTGTGGTTGTCTTAAGATG+AGG - chr8_4:46416649-46416668 None:intergenic 40.0%
TCATCTTAAGACAACCACAG+AGG + chr8_4:46416648-46416667 Msa1328550:CDS 40.0%
!!! TTTTGAGGTGAAATCCTCTG+TGG - chr8_4:46416665-46416684 None:intergenic 40.0%
GAGAGAAAGTGATTGATTGG+AGG + chr8_4:46416876-46416895 Msa1328550:CDS 40.0%
ACAAGGTCAGATTGTGACAT+TGG + chr8_4:46417031-46417050 Msa1328550:CDS 40.0%
! GGTGAGAGATAAAGAGTGTG+AGG - chr8_4:46413454-46413473 None:intergenic 45.0%
ACGAATAGAGCTACAATGGC+AGG + chr8_4:46414337-46414356 Msa1328550:CDS 45.0%
CGAATAGAGCTACAATGGCA+GGG + chr8_4:46414338-46414357 Msa1328550:CDS 45.0%
AGCAACCGGAAGAGATAAGT+CGG + chr8_4:46414369-46414388 Msa1328550:CDS 45.0%
AGTTGAAAATGCACCTCCAC+AGG + chr8_4:46414504-46414523 Msa1328550:intron 45.0%
GCTGAGATCACTAACTAGAG+AGG - chr8_4:46415180-46415199 None:intergenic 45.0%
TCAACTGAGTTAAGGTCACG+GGG - chr8_4:46416106-46416125 None:intergenic 45.0%
! ATATGGAGAAGTGGGGTATC+CGG - chr8_4:46416167-46416186 None:intergenic 45.0%
ATGTGTGAGCTTCAGTCACT+AGG + chr8_4:46416192-46416211 Msa1328550:intron 45.0%
AAGTAGCATCATCTCAAGGG+TGG + chr8_4:46416613-46416632 Msa1328550:CDS 45.0%
!! AAAGAGGGACTTTCTAGCTG+AGG - chr8_4:46416767-46416786 None:intergenic 45.0%
GAGGGATCTTGACAAGTTTG+TGG + chr8_4:46416895-46416914 Msa1328550:CDS 45.0%
!! ATATTTAATTAATTAATCAA+GGG - chr8_4:46414616-46414635 None:intergenic 5.0%
!! AATATTTAATTAATTAATCA+AGG - chr8_4:46414617-46414636 None:intergenic 5.0%
!!! TTTTATTTTTATTCATTTTA+AGG + chr8_4:46415600-46415619 Msa1328550:intron 5.0%
!!! AAAAAAAAAACTTTATTTAA+AGG + chr8_4:46416224-46416243 Msa1328550:intron 5.0%
CATGTGTCCCACCTGGATTT+CGG + chr8_4:46413609-46413628 Msa1328550:CDS 50.0%
TGGATTTCGGTTCCACCCAA+CGG + chr8_4:46413622-46413641 Msa1328550:CDS 50.0%
CAACAAGCTCTCCATCCGTT+GGG - chr8_4:46413640-46413659 None:intergenic 50.0%
GGAGATCCCAGGGTTCAATA+CGG - chr8_4:46413733-46413752 None:intergenic 50.0%
ATTGAACCCTGGGATCTCCA+AGG + chr8_4:46413734-46413753 Msa1328550:CDS 50.0%
GGAATGAGGAGCAACATGAG+TGG + chr8_4:46414269-46414288 Msa1328550:intron 50.0%
CTATTCGTTCTCGTCCCTGT+TGG - chr8_4:46414325-46414344 None:intergenic 50.0%
! TATGGAGAAGTGGGGTATCC+GGG - chr8_4:46416166-46416185 None:intergenic 50.0%
AGTGTTCCCTTGCAGGAAGA+AGG + chr8_4:46416497-46416516 Msa1328550:intron 50.0%
TTCCCTTGCAGGAAGAAGGT+TGG + chr8_4:46416501-46416520 Msa1328550:intron 50.0%
TCCCTTGCAGGAAGAAGGTT+GGG + chr8_4:46416502-46416521 Msa1328550:intron 50.0%
ACCCAACCTTCTTCCTGCAA+GGG - chr8_4:46416506-46416525 None:intergenic 50.0%
AACCCAACCTTCTTCCTGCA+AGG - chr8_4:46416507-46416526 None:intergenic 50.0%
!! GGACTTTCTAGCTGAGGAAG+AGG - chr8_4:46416761-46416780 None:intergenic 50.0%
ATGGAGTCATGTGTCCCACC+TGG + chr8_4:46413602-46413621 Msa1328550:CDS 55.0%
GGTGGAACCGAAATCCAGGT+GGG - chr8_4:46413619-46413638 None:intergenic 55.0%
GTTGGGTGGAACCGAAATCC+AGG - chr8_4:46413623-46413642 None:intergenic 55.0%
TTTCGGTTCCACCCAACGGA+TGG + chr8_4:46413626-46413645 Msa1328550:CDS 55.0%
CCAACAAGCTCTCCATCCGT+TGG - chr8_4:46413641-46413660 None:intergenic 55.0%
CCAACGGATGGAGAGCTTGT+TGG + chr8_4:46413638-46413657 Msa1328550:CDS 55.0%
GAGCTACAATGGCAGGGTTC+TGG + chr8_4:46414344-46414363 Msa1328550:CDS 55.0%
!! GCAGGGTTCTGGAAAGCAAC+CGG + chr8_4:46414355-46414374 Msa1328550:CDS 55.0%
ATGCAGAAGTCGGGGAATCC+CGG + chr8_4:46416145-46416164 Msa1328550:intron 55.0%
GGGTGGAACCGAAATCCAGG+TGG - chr8_4:46413620-46413639 None:intergenic 60.0%
CAAGCTCTCCATCCGTTGGG+TGG - chr8_4:46413637-46413656 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 46413346 46417075 46413346 ID=Msa1328550;Name=Msa1328550
chr8_4 mRNA 46413346 46417075 46413346 ID=Msa1328550-mRNA-1;Parent=Msa1328550;Name=Msa1328550-mRNA-1;_AED=0.13;_eAED=0.13;_QI=253|0|0.33|1|0|0.66|3|0|304
chr8_4 exon 46413346 46413755 46413346 ID=Msa1328550-mRNA-1:exon:13153;Parent=Msa1328550-mRNA-1
chr8_4 exon 46414311 46414504 46414311 ID=Msa1328550-mRNA-1:exon:13154;Parent=Msa1328550-mRNA-1
chr8_4 exon 46416512 46417075 46416512 ID=Msa1328550-mRNA-1:exon:13155;Parent=Msa1328550-mRNA-1
chr8_4 five_prime_UTR 46413346 46413598 46413346 ID=Msa1328550-mRNA-1:five_prime_utr;Parent=Msa1328550-mRNA-1
chr8_4 CDS 46413599 46413755 46413599 ID=Msa1328550-mRNA-1:cds;Parent=Msa1328550-mRNA-1
chr8_4 CDS 46414311 46414504 46414311 ID=Msa1328550-mRNA-1:cds;Parent=Msa1328550-mRNA-1
chr8_4 CDS 46416512 46417075 46416512 ID=Msa1328550-mRNA-1:cds;Parent=Msa1328550-mRNA-1
Gene Sequence

>Msa1328550

ATGATGGAGTCATGTGTCCCACCTGGATTTCGGTTCCACCCAACGGATGGAGAGCTTGTTGGTTATTATCTTAGAAAGAAAGTAGCTTCTCACAAGATTGATCTTGATGTTATCAAAGAGATTGATCTATACCGTATTGAACCCTGGGATCTCCAAGATAAGAAATATCCAACAGGGACGAGAACGAATAGAGCTACAATGGCAGGGTTCTGGAAAGCAACCGGAAGAGATAAGTCGGTGTATGAACGAACAAAACTGATTGGAATGAGGAAGACACTCGTTTTCTACAAAGGAAGAGCACCTAATGGACAGAAAACTGATTGGATCATGCATGAATATAGGCTTGAAACAGAAGAAGGTTGGGTTGTGTGCAAAGCATTCAAGAAAAAAACTACTGTGCAAGCAAAAACAAATGAAAGATGGGATCCAAGCCACTTATATGATGAACAAACAAGTAGCATCATCTCAAGGGTGGACCCCATTGACCTCATCTTAAGACAACCACAGAGGATTTCACCTCAAAATTTCATGTACAAACAAGAGATAGAAGCAGAAGCAGATACATTATTAAGCTTCATGCATTCAGAACAAATGGTACCTCTTCCTCAGCTAGAAAGTCCCTCTTTAACAAAGAGGCAAAACTCAATGCCAATAATATCAGAACATAACAATGATGAATTTCAAAATGGATTGTCATTCAACATCAACAACAAAAGAGAGAAAGTGATTGATTGGAGGGATCTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGATCATAGGCATGAAACAAGCTCAGACATGTCATTGTTCCTACTTCAAAGTAGTAAGGATGATGAAGAGAACAAGTTAAGCTCATTTTTAACTACAAGGTCAGATTGTGACATTGGTATATGTGTATTTGAAAATTAA
Protein sequence

>Msa1328550

MMESCVPPGFRFHPTDGELVGYYLRKKVASHKIDLDVIKEIDLYRIEPWDLQDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETEEGWVVCKAFKKKTTVQAKTNERWDPSHLYDEQTSSIISRVDPIDLILRQPQRISPQNFMYKQEIEAEADTLLSFMHSEQMVPLPQLESPSLTKRQNSMPIISEHNNDEFQNGLSFNINNKREKVIDWRDLDKFVASQLSQEDHRHETSSDMSLFLLQSSKDDEENKLSSFLTTRSDCDIGICVFEN*