AlfalfaGEDB | Msa1329780

M. sativa cultivar zhongmu-4 / Msa1329780

KEGG: -
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009786 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051302 GO:0051321 GO:0051704 GO:0065007 GO:1903046
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329780	XP_013457865.1	98.997	299	3	0	1	299	1	299	0.0	620

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329780	sp\|Q9STS6\|LBD27_ARATH	38.889	306	139	8	1	262	27	328	2.47e-54	182

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329780	A0A072URD2	98.997	299	3	0	1	299	1	299	0.0	620

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TFs/TRs:

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Gene ID	Type	Classification
Msa1329780	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329780	MtrunA17_Chr4g0059901	98.868	265	3	0	1	265	1	265	0.0	553
Msa1329780	MtrunA17_Chr8g0342351	58.333	108	45	0	7	114	9	116	1.39e-35	129
Msa1329780	MtrunA17_Chr6g0452671	51.786	112	54	0	4	115	5	116	2.60e-35	126
Msa1329780	MtrunA17_Chr6g0452661	50.000	114	56	1	9	121	8	121	1.23e-32	120
Msa1329780	MtrunA17_Chr6g0452691	49.138	116	58	1	7	121	6	121	7.21e-32	117
Msa1329780	MtrunA17_Chr2g0330201	51.376	109	53	0	6	114	15	123	3.71e-31	118
Msa1329780	MtrunA17_Chr5g0439111	51.304	115	55	1	9	122	8	122	1.64e-30	114
Msa1329780	MtrunA17_Chr7g0227511	37.580	157	86	4	11	162	12	161	5.71e-30	111
Msa1329780	MtrunA17_Chr3g0117121	50.538	93	46	0	11	103	11	103	1.35e-28	108
Msa1329780	MtrunA17_Chr4g0058651	48.958	96	49	0	11	106	12	107	1.88e-28	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329780	AT3G47870.1	38.889	306	139	8	1	262	27	328	2.51e-55	182
Msa1329780	AT3G13850.1	46.452	155	68	2	9	161	35	176	1.07e-35	129
Msa1329780	AT1G72980.1	47.656	128	62	1	2	124	5	132	8.77e-34	123
Msa1329780	AT5G63090.4	48.000	100	52	0	11	110	12	111	1.70e-28	108
Msa1329780	AT5G63090.3	48.000	100	52	0	11	110	12	111	1.70e-28	108
Msa1329780	AT5G63090.2	48.000	100	52	0	11	110	12	111	1.70e-28	108
Msa1329780	AT5G63090.1	48.000	100	52	0	11	110	12	111	1.70e-28	108
Msa1329780	AT1G65620.1	55.422	83	37	0	7	89	6	88	1.11e-27	106
Msa1329780	AT1G65620.4	55.422	83	37	0	7	89	6	88	1.11e-27	106
Msa1329780	AT1G65620.3	55.422	83	37	0	7	89	6	88	1.11e-27	106

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Find 56 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTGCGAGCGCATTGA+AGG	0.447294	8_4:+48638439	None:intergenic
AATAACAATAATGACCCTTA+AGG	0.406316	8_4:-48638864	None:intergenic
ACAATAATGACCCTTAAGGG+TGG	0.682430	8_4:-48638860	None:intergenic
ACAATATCAAATATGGATGA+TGG	0.492612	8_4:-48638579	Msa1329780:CDS
AGCAATGCAACCTCATAAGT+TGG	0.519249	8_4:-48638216	Msa1329780:CDS
AGGGATAAGTATCCTGTGCA+TGG	0.583412	8_4:-48638626	Msa1329780:CDS
ATAACAATAATGACCCTTAA+GGG	0.428036	8_4:-48638863	None:intergenic
ATAATCCACACTATTGCTGT+TGG	0.518450	8_4:+48638334	None:intergenic
ATCAACAACTTGAAATTTGC+AGG	0.281961	8_4:-48638535	Msa1329780:CDS
ATCATACATTTATTCTAAGG+AGG	0.554320	8_4:-48638093	Msa1329780:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTAACTCCAAATAATTTG+TGG	+	chr8_4:48637889-48637908	None:intergenic	30.0%
ATCAACAACTTGAAATTTGC+AGG	-	chr8_4:48638080-48638099	Msa1329780:CDS	30.0%
TTCACAGTTAGAATTAGGAA+TGG	-	chr8_4:48638144-48638163	Msa1329780:CDS	30.0%
TGCTAACTCCAAATAATTTG+TGG	+	chr8_4:48637889-48637908	None:intergenic	30.0%
ATCAACAACTTGAAATTTGC+AGG	-	chr8_4:48638080-48638099	Msa1329780:CDS	30.0%
TTCACAGTTAGAATTAGGAA+TGG	-	chr8_4:48638144-48638163	Msa1329780:CDS	30.0%
GCAGGCTACAATATCAAATA+TGG	-	chr8_4:48638029-48638048	Msa1329780:intron	35.0%
GTGACTTCACAGTTAGAATT+AGG	-	chr8_4:48638139-48638158	Msa1329780:CDS	35.0%
ATAATCCACACTATTGCTGT+TGG	+	chr8_4:48638284-48638303	None:intergenic	35.0%
ATCCTTTGAATCCATGTAGA+GGG	+	chr8_4:48638317-48638336	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	48637761	48638876	48637761	ID=Msa1329780;Name=Msa1329780
chr8_4	mRNA	48637761	48638876	48637761	ID=Msa1329780-mRNA-1;Parent=Msa1329780;Name=Msa1329780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|299
chr8_4	exon	48638080	48638876	48638080	ID=Msa1329780-mRNA-1:exon:13989;Parent=Msa1329780-mRNA-1
chr8_4	exon	48637761	48637863	48637761	ID=Msa1329780-mRNA-1:exon:13988;Parent=Msa1329780-mRNA-1
chr8_4	CDS	48638080	48638876	48638080	ID=Msa1329780-mRNA-1:cds;Parent=Msa1329780-mRNA-1
chr8_4	CDS	48637761	48637863	48637761	ID=Msa1329780-mRNA-1:cds;Parent=Msa1329780-mRNA-1

Gene Sequence

>Msa1329780

ATGACCCTTAAGGGTGGCACAACACAAGCCTGTGCAGCATGCAAATTCCAAAGAAGAAAGTGCACACCTGAGTGCCTTTTAGCTCCTTATTTCCCTGCAGATCAACCCAAAATTTTCCAAAATGTCCACAAATTATTTGGAGTTAGCAACATTGTGAAAATACTAAAGTACCTGGAACCTAGTCAGAAGAAAACAGCCATGGATTCTATTATCATTCAAGCTAATTATAGGGATAAGTATCCTGTGCATGGATGTTGTGAGGAAATTTGCAGGCTACAATATCAAATATGGATGATGGAAGAAGAACTTCATGCTGTTTATCAACAACTTGAAATTTGCAGGCAACAACAAAACCAACAACAGTTACCTCATGATGATGTGACTTCACAGTTAGAATTAGGAATGGCAACACGTTCCTTCAATGCGCTCGCACTCTTTAATCACTCTCCACAACCACAGAGTTACAACAACAATAACACAGTTGCTGCACCTTTGTCTGTATCTCAGCAACATTCCTACTCCAACAGCAATAGTGTGGATTATAATAACTCCTCCCTCTACATGGATTCAAAGGATGATGCTACAAATCCTAATTTATGGCTTCAGTGCCCTTACACAAATAATAATAGCAGTTCAATAGCAATGCAACCTCATAAGTTGGTTACCTCAGAGTCACAGCCACTATCATCTGTCCAACAAGGAGTTGTTGAAGATAATTATGATGAGATGCATTCATTTTTTGATACAGTTGATGATAGGCAATCATACATTTATTCTAAGGAGGCTTATGAATCAAGTTCGGAAGAATCACTGAAAGATACAAGAAAGTGCACAGAGCATGTATCTGAGAATGAACTGAAGAGTGCTGCTGCTTGTTTCAGCCTTACCAGTGTCAACTGA

Protein sequence

>Msa1329780

MTLKGGTTQACAACKFQRRKCTPECLLAPYFPADQPKIFQNVHKLFGVSNIVKILKYLEPSQKKTAMDSIIIQANYRDKYPVHGCCEEICRLQYQIWMMEEELHAVYQQLEICRQQQNQQQLPHDDVTSQLELGMATRSFNALALFNHSPQPQSYNNNNTVAAPLSVSQQHSYSNSNSVDYNNSSLYMDSKDDATNPNLWLQCPYTNNNSSSIAMQPHKLVTSESQPLSSVQQGVVEDNYDEMHSFFDTVDDRQSYIYSKEAYESSSEESLKDTRKCTEHVSENELKSAAACFSLTSVN*