Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330040 | sp|Q9LT81|C3H39_ARATH | 30.055 | 183 | 61 | 4 | 1 | 117 | 186 | 367 | 2.88e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330040 | G7JVB8 | 66.667 | 147 | 19 | 1 | 1 | 117 | 118 | 264 | 2.77e-58 | 190 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1330040 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330040 | MtrunA17_Chr4g0063371 | 82.906 | 117 | 13 | 1 | 1 | 117 | 116 | 225 | 2.16e-57 | 177 |
| Msa1330040 | MtrunA17_Chr4g0063391 | 53.763 | 93 | 13 | 1 | 1 | 63 | 118 | 210 | 8.57e-27 | 99.0 |
| Msa1330040 | MtrunA17_Chr4g0063401 | 42.718 | 103 | 17 | 2 | 1 | 62 | 147 | 248 | 7.40e-18 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330040 | AT3G19360.1 | 30.055 | 183 | 61 | 4 | 1 | 117 | 186 | 367 | 2.93e-19 | 81.6 |
| Msa1330040 | AT3G19360.2 | 30.055 | 183 | 61 | 4 | 1 | 117 | 186 | 367 | 2.93e-19 | 81.6 |
Find 35 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGATCCTGCACAATTT+AGG | 0.163729 | 8_4:+49073543 | Msa1330040:CDS |
| CCAAGTATACGTTTCTTCTT+AGG | 0.214369 | 8_4:-49074541 | None:intergenic |
| TGAAGATCCTGCACAATTTA+GGG | 0.278155 | 8_4:+49073544 | Msa1330040:CDS |
| AGTCAGATCAATCGTATTTA+CGG | 0.310380 | 8_4:+49074574 | Msa1330040:CDS |
| GATACAGGATATTGTTCCTT+TGG | 0.336419 | 8_4:+49073605 | Msa1330040:CDS |
| CACAATTTAGGGGCACTTAT+CGG | 0.370314 | 8_4:+49073555 | Msa1330040:CDS |
| AATTGCAGCTTCAGCTTCAA+TGG | 0.390999 | 8_4:-49074449 | None:intergenic |
| AAATCAGAGTTACAAGTTCC+TGG | 0.400098 | 8_4:+49074421 | Msa1330040:intron |
| GACTTGCAGGGGAGGTGGTA+GGG | 0.419543 | 8_4:-49074492 | None:intergenic |
| TGCAAGTCAACTTGTGGAAA+AGG | 0.437938 | 8_4:+49074507 | Msa1330040:CDS |
| CCTAAGAAGAAACGTATACT+TGG | 0.441257 | 8_4:+49074541 | Msa1330040:CDS |
| CACTTTGCTCATGGTGAAGA+AGG | 0.463092 | 8_4:+49073638 | Msa1330040:CDS |
| TGTCTCAAGTGGAAGGATAC+AGG | 0.464303 | 8_4:+49073590 | Msa1330040:CDS |
| TGTGCAAGAAGTATAGCAAT+GGG | 0.488339 | 8_4:+49073483 | Msa1330040:CDS |
| TGACTTGCAGGGGAGGTGGT+AGG | 0.490726 | 8_4:-49074493 | None:intergenic |
| CACAAGTTGACTTGCAGGGG+AGG | 0.509364 | 8_4:-49074500 | None:intergenic |
| AATTTACACTTATCTGCATA+GGG | 0.538027 | 8_4:-49073515 | None:intergenic |
| CTCCCCTGCAAGTCAACTTG+TGG | 0.543090 | 8_4:+49074501 | Msa1330040:CDS |
| AAGTTGACTTGCAGGGGAGG+TGG | 0.548779 | 8_4:-49074497 | None:intergenic |
| GAATTTACACTTATCTGCAT+AGG | 0.559420 | 8_4:-49073516 | None:intergenic |
| TTTCCACAAGTTGACTTGCA+GGG | 0.560920 | 8_4:-49074504 | None:intergenic |
| TAAGTGCCCCTAAATTGTGC+AGG | 0.568865 | 8_4:-49073551 | None:intergenic |
| CTGTGCAAGAAGTATAGCAA+TGG | 0.572239 | 8_4:+49073482 | Msa1330040:CDS |
| TCAGCTTCAATGGCTCCACC+AGG | 0.575223 | 8_4:-49074439 | None:intergenic |
| CTAAGAAGAAACGTATACTT+GGG | 0.583825 | 8_4:+49074542 | Msa1330040:CDS |
| AAGAACTGTCACTTTGCTCA+TGG | 0.585017 | 8_4:+49073629 | Msa1330040:CDS |
| TTCCACAAGTTGACTTGCAG+GGG | 0.588906 | 8_4:-49074503 | None:intergenic |
| AGACTAAGCTGTGTCTCAAG+TGG | 0.589149 | 8_4:+49073579 | Msa1330040:CDS |
| ATTGTGCAGGATCTTCATGA+AGG | 0.599081 | 8_4:-49073538 | None:intergenic |
| TAAGCTGTGTCTCAAGTGGA+AGG | 0.609632 | 8_4:+49073583 | Msa1330040:CDS |
| AAAGTGACAGTTCTTTCCAA+AGG | 0.613225 | 8_4:-49073621 | None:intergenic |
| GAAGATCCTGCACAATTTAG+GGG | 0.650410 | 8_4:+49073545 | Msa1330040:CDS |
| CAAGAAGTATAGCAATGGGG+AGG | 0.680526 | 8_4:+49073487 | Msa1330040:CDS |
| TCAGAGTTACAAGTTCCTGG+TGG | 0.718686 | 8_4:+49074424 | Msa1330040:intron |
| GTGCAAGAAGTATAGCAATG+GGG | 0.763140 | 8_4:+49073484 | Msa1330040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAGTTTTACATT+TGG | + | chr8_4:49073951-49073970 | Msa1330040:intron | 10.0% |
| !!! | GACAATTTTTTTTAAATATA+AGG | - | chr8_4:49074272-49074291 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAGTTTTACATT+TGG | + | chr8_4:49073951-49073970 | Msa1330040:intron | 10.0% |
| !!! | GACAATTTTTTTTAAATATA+AGG | - | chr8_4:49074272-49074291 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAATATAAGGTCT+AGG | - | chr8_4:49074266-49074285 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAATATAAGGTCT+AGG | - | chr8_4:49074266-49074285 | None:intergenic | 15.0% |
| !!! | CAATAACTCATTTTGATTAT+TGG | + | chr8_4:49073664-49073683 | Msa1330040:intron | 20.0% |
| !!! | TACTATAATTTCTAGTAGTT+TGG | + | chr8_4:49073979-49073998 | Msa1330040:intron | 20.0% |
| !!! | TTATAACAATTGCAACTTTT+TGG | + | chr8_4:49074353-49074372 | Msa1330040:intron | 20.0% |
| !!! | CAATAACTCATTTTGATTAT+TGG | + | chr8_4:49073664-49073683 | Msa1330040:intron | 20.0% |
| !!! | TACTATAATTTCTAGTAGTT+TGG | + | chr8_4:49073979-49073998 | Msa1330040:intron | 20.0% |
| !!! | TTATAACAATTGCAACTTTT+TGG | + | chr8_4:49074353-49074372 | Msa1330040:intron | 20.0% |
| ! | AATTTACACTTATCTGCATA+GGG | - | chr8_4:49073518-49073537 | None:intergenic | 25.0% |
| !!! | CTCATTTTGATTATTGGTTT+TGG | + | chr8_4:49073670-49073689 | Msa1330040:intron | 25.0% |
| ! | AGTAATCATCCATTAGAATA+AGG | - | chr8_4:49073910-49073929 | None:intergenic | 25.0% |
| ! | AATGGATGATTACTATTGTA+TGG | + | chr8_4:49073916-49073935 | Msa1330040:intron | 25.0% |
| !! | ACTTTAAGAAGAAACAAGTT+TGG | - | chr8_4:49074054-49074073 | None:intergenic | 25.0% |
| !! | TTAAAGTTTCTGCTGATTAT+TGG | + | chr8_4:49074067-49074086 | Msa1330040:intron | 25.0% |
| ! | AATTTACACTTATCTGCATA+GGG | - | chr8_4:49073518-49073537 | None:intergenic | 25.0% |
| !!! | CTCATTTTGATTATTGGTTT+TGG | + | chr8_4:49073670-49073689 | Msa1330040:intron | 25.0% |
| ! | AGTAATCATCCATTAGAATA+AGG | - | chr8_4:49073910-49073929 | None:intergenic | 25.0% |
| ! | AATGGATGATTACTATTGTA+TGG | + | chr8_4:49073916-49073935 | Msa1330040:intron | 25.0% |
| !! | ACTTTAAGAAGAAACAAGTT+TGG | - | chr8_4:49074054-49074073 | None:intergenic | 25.0% |
| !! | TTAAAGTTTCTGCTGATTAT+TGG | + | chr8_4:49074067-49074086 | Msa1330040:intron | 25.0% |
| GAATTTACACTTATCTGCAT+AGG | - | chr8_4:49073519-49073538 | None:intergenic | 30.0% | |
| !!! | TTTGAATGTGTGTCATTTTG+TGG | + | chr8_4:49073818-49073837 | Msa1330040:intron | 30.0% |
| TGATTCCATCCTTATTCTAA+TGG | + | chr8_4:49073898-49073917 | Msa1330040:intron | 30.0% | |
| ATCATCCATTAGAATAAGGA+TGG | - | chr8_4:49073906-49073925 | None:intergenic | 30.0% | |
| GATGAACATAATACAATAGC+TGG | - | chr8_4:49074027-49074046 | None:intergenic | 30.0% | |
| CCTCAAAATTATTGATGAGT+CGG | - | chr8_4:49074108-49074127 | None:intergenic | 30.0% | |
| AAGAGTCAGAACAATATACA+TGG | - | chr8_4:49074382-49074401 | None:intergenic | 30.0% | |
| !!! | AGGGTTTGTTGAATTTTCTA+TGG | - | chr8_4:49074476-49074495 | None:intergenic | 30.0% |
| CTAAGAAGAAACGTATACTT+GGG | + | chr8_4:49074542-49074561 | Msa1330040:CDS | 30.0% | |
| GAATTTACACTTATCTGCAT+AGG | - | chr8_4:49073519-49073538 | None:intergenic | 30.0% | |
| !!! | TTTGAATGTGTGTCATTTTG+TGG | + | chr8_4:49073818-49073837 | Msa1330040:intron | 30.0% |
| TGATTCCATCCTTATTCTAA+TGG | + | chr8_4:49073898-49073917 | Msa1330040:intron | 30.0% | |
| ATCATCCATTAGAATAAGGA+TGG | - | chr8_4:49073906-49073925 | None:intergenic | 30.0% | |
| GATGAACATAATACAATAGC+TGG | - | chr8_4:49074027-49074046 | None:intergenic | 30.0% | |
| CCTCAAAATTATTGATGAGT+CGG | - | chr8_4:49074108-49074127 | None:intergenic | 30.0% | |
| AAGAGTCAGAACAATATACA+TGG | - | chr8_4:49074382-49074401 | None:intergenic | 30.0% | |
| !!! | AGGGTTTGTTGAATTTTCTA+TGG | - | chr8_4:49074476-49074495 | None:intergenic | 30.0% |
| CTAAGAAGAAACGTATACTT+GGG | + | chr8_4:49074542-49074561 | Msa1330040:CDS | 30.0% | |
| ! | TGTGCAAGAAGTATAGCAAT+GGG | + | chr8_4:49073483-49073502 | Msa1330040:CDS | 35.0% |
| ATGAAGATCCTGCACAATTT+AGG | + | chr8_4:49073543-49073562 | Msa1330040:CDS | 35.0% | |
| TGAAGATCCTGCACAATTTA+GGG | + | chr8_4:49073544-49073563 | Msa1330040:CDS | 35.0% | |
| GATACAGGATATTGTTCCTT+TGG | + | chr8_4:49073605-49073624 | Msa1330040:CDS | 35.0% | |
| AAAGTGACAGTTCTTTCCAA+AGG | - | chr8_4:49073624-49073643 | None:intergenic | 35.0% | |
| !! | TTGACAAAGCAAGTTCTGAA+TGG | + | chr8_4:49073871-49073890 | Msa1330040:intron | 35.0% |
| ! | CCGACTCATCAATAATTTTG+AGG | + | chr8_4:49074105-49074124 | Msa1330040:intron | 35.0% |
| CTTATTTGACCGTGGTATTA+AGG | - | chr8_4:49074176-49074195 | None:intergenic | 35.0% | |
| CTTAATACCACGGTCAAATA+AGG | + | chr8_4:49074174-49074193 | Msa1330040:intron | 35.0% | |
| TGTCTTCATCATCACAAATG+CGG | - | chr8_4:49074209-49074228 | None:intergenic | 35.0% | |
| ATCATACACTTGCACACAAA+TGG | - | chr8_4:49074294-49074313 | None:intergenic | 35.0% | |
| TGTTCTGACTCTTGAAGTAT+TGG | + | chr8_4:49074389-49074408 | Msa1330040:intron | 35.0% | |
| AAATCAGAGTTACAAGTTCC+TGG | + | chr8_4:49074421-49074440 | Msa1330040:intron | 35.0% | |
| CCAAGTATACGTTTCTTCTT+AGG | - | chr8_4:49074544-49074563 | None:intergenic | 35.0% | |
| CCTAAGAAGAAACGTATACT+TGG | + | chr8_4:49074541-49074560 | Msa1330040:CDS | 35.0% | |
| ! | TGTGCAAGAAGTATAGCAAT+GGG | + | chr8_4:49073483-49073502 | Msa1330040:CDS | 35.0% |
| ATGAAGATCCTGCACAATTT+AGG | + | chr8_4:49073543-49073562 | Msa1330040:CDS | 35.0% | |
| TGAAGATCCTGCACAATTTA+GGG | + | chr8_4:49073544-49073563 | Msa1330040:CDS | 35.0% | |
| GATACAGGATATTGTTCCTT+TGG | + | chr8_4:49073605-49073624 | Msa1330040:CDS | 35.0% | |
| AAAGTGACAGTTCTTTCCAA+AGG | - | chr8_4:49073624-49073643 | None:intergenic | 35.0% | |
| !! | TTGACAAAGCAAGTTCTGAA+TGG | + | chr8_4:49073871-49073890 | Msa1330040:intron | 35.0% |
| ! | CCGACTCATCAATAATTTTG+AGG | + | chr8_4:49074105-49074124 | Msa1330040:intron | 35.0% |
| CTTATTTGACCGTGGTATTA+AGG | - | chr8_4:49074176-49074195 | None:intergenic | 35.0% | |
| CTTAATACCACGGTCAAATA+AGG | + | chr8_4:49074174-49074193 | Msa1330040:intron | 35.0% | |
| TGTCTTCATCATCACAAATG+CGG | - | chr8_4:49074209-49074228 | None:intergenic | 35.0% | |
| ATCATACACTTGCACACAAA+TGG | - | chr8_4:49074294-49074313 | None:intergenic | 35.0% | |
| TGTTCTGACTCTTGAAGTAT+TGG | + | chr8_4:49074389-49074408 | Msa1330040:intron | 35.0% | |
| AAATCAGAGTTACAAGTTCC+TGG | + | chr8_4:49074421-49074440 | Msa1330040:intron | 35.0% | |
| CCAAGTATACGTTTCTTCTT+AGG | - | chr8_4:49074544-49074563 | None:intergenic | 35.0% | |
| CCTAAGAAGAAACGTATACT+TGG | + | chr8_4:49074541-49074560 | Msa1330040:CDS | 35.0% | |
| ! | CTGTGCAAGAAGTATAGCAA+TGG | + | chr8_4:49073482-49073501 | Msa1330040:CDS | 40.0% |
| ! | GTGCAAGAAGTATAGCAATG+GGG | + | chr8_4:49073484-49073503 | Msa1330040:CDS | 40.0% |
| ATTGTGCAGGATCTTCATGA+AGG | - | chr8_4:49073541-49073560 | None:intergenic | 40.0% | |
| GAAGATCCTGCACAATTTAG+GGG | + | chr8_4:49073545-49073564 | Msa1330040:CDS | 40.0% | |
| !! | CACAATTTAGGGGCACTTAT+CGG | + | chr8_4:49073555-49073574 | Msa1330040:CDS | 40.0% |
| !! | AAGAACTGTCACTTTGCTCA+TGG | + | chr8_4:49073629-49073648 | Msa1330040:CDS | 40.0% |
| ! | GCATTAACCTTATTTGACCG+TGG | - | chr8_4:49074184-49074203 | None:intergenic | 40.0% |
| AATTGCAGCTTCAGCTTCAA+TGG | - | chr8_4:49074452-49074471 | None:intergenic | 40.0% | |
| !! | TTTCCACAAGTTGACTTGCA+GGG | - | chr8_4:49074507-49074526 | None:intergenic | 40.0% |
| !!! | TTTTCCACAAGTTGACTTGC+AGG | - | chr8_4:49074508-49074527 | None:intergenic | 40.0% |
| TGCAAGTCAACTTGTGGAAA+AGG | + | chr8_4:49074507-49074526 | Msa1330040:CDS | 40.0% | |
| ! | CTGTGCAAGAAGTATAGCAA+TGG | + | chr8_4:49073482-49073501 | Msa1330040:CDS | 40.0% |
| ! | GTGCAAGAAGTATAGCAATG+GGG | + | chr8_4:49073484-49073503 | Msa1330040:CDS | 40.0% |
| ATTGTGCAGGATCTTCATGA+AGG | - | chr8_4:49073541-49073560 | None:intergenic | 40.0% | |
| GAAGATCCTGCACAATTTAG+GGG | + | chr8_4:49073545-49073564 | Msa1330040:CDS | 40.0% | |
| !! | CACAATTTAGGGGCACTTAT+CGG | + | chr8_4:49073555-49073574 | Msa1330040:CDS | 40.0% |
| !! | AAGAACTGTCACTTTGCTCA+TGG | + | chr8_4:49073629-49073648 | Msa1330040:CDS | 40.0% |
| ! | GCATTAACCTTATTTGACCG+TGG | - | chr8_4:49074184-49074203 | None:intergenic | 40.0% |
| AATTGCAGCTTCAGCTTCAA+TGG | - | chr8_4:49074452-49074471 | None:intergenic | 40.0% | |
| !! | TTTCCACAAGTTGACTTGCA+GGG | - | chr8_4:49074507-49074526 | None:intergenic | 40.0% |
| !!! | TTTTCCACAAGTTGACTTGC+AGG | - | chr8_4:49074508-49074527 | None:intergenic | 40.0% |
| TGCAAGTCAACTTGTGGAAA+AGG | + | chr8_4:49074507-49074526 | Msa1330040:CDS | 40.0% | |
| ! | CAAGAAGTATAGCAATGGGG+AGG | + | chr8_4:49073487-49073506 | Msa1330040:CDS | 45.0% |
| TAAGTGCCCCTAAATTGTGC+AGG | - | chr8_4:49073554-49073573 | None:intergenic | 45.0% | |
| AGACTAAGCTGTGTCTCAAG+TGG | + | chr8_4:49073579-49073598 | Msa1330040:CDS | 45.0% | |
| TAAGCTGTGTCTCAAGTGGA+AGG | + | chr8_4:49073583-49073602 | Msa1330040:CDS | 45.0% | |
| TGTCTCAAGTGGAAGGATAC+AGG | + | chr8_4:49073590-49073609 | Msa1330040:CDS | 45.0% | |
| CACTTTGCTCATGGTGAAGA+AGG | + | chr8_4:49073638-49073657 | Msa1330040:CDS | 45.0% | |
| TGGTATTAAGGATCGTGGCA+TGG | - | chr8_4:49074164-49074183 | None:intergenic | 45.0% | |
| TGCCACGATCCTTAATACCA+CGG | + | chr8_4:49074164-49074183 | Msa1330040:intron | 45.0% | |
| TCAGAGTTACAAGTTCCTGG+TGG | + | chr8_4:49074424-49074443 | Msa1330040:intron | 45.0% | |
| !! | TTCCACAAGTTGACTTGCAG+GGG | - | chr8_4:49074506-49074525 | None:intergenic | 45.0% |
| ! | CAAGAAGTATAGCAATGGGG+AGG | + | chr8_4:49073487-49073506 | Msa1330040:CDS | 45.0% |
| TAAGTGCCCCTAAATTGTGC+AGG | - | chr8_4:49073554-49073573 | None:intergenic | 45.0% | |
| AGACTAAGCTGTGTCTCAAG+TGG | + | chr8_4:49073579-49073598 | Msa1330040:CDS | 45.0% | |
| TAAGCTGTGTCTCAAGTGGA+AGG | + | chr8_4:49073583-49073602 | Msa1330040:CDS | 45.0% | |
| TGTCTCAAGTGGAAGGATAC+AGG | + | chr8_4:49073590-49073609 | Msa1330040:CDS | 45.0% | |
| CACTTTGCTCATGGTGAAGA+AGG | + | chr8_4:49073638-49073657 | Msa1330040:CDS | 45.0% | |
| TGGTATTAAGGATCGTGGCA+TGG | - | chr8_4:49074164-49074183 | None:intergenic | 45.0% | |
| TGCCACGATCCTTAATACCA+CGG | + | chr8_4:49074164-49074183 | Msa1330040:intron | 45.0% | |
| TCAGAGTTACAAGTTCCTGG+TGG | + | chr8_4:49074424-49074443 | Msa1330040:intron | 45.0% | |
| !! | TTCCACAAGTTGACTTGCAG+GGG | - | chr8_4:49074506-49074525 | None:intergenic | 45.0% |
| GACCGTGGTATTAAGGATCG+TGG | - | chr8_4:49074169-49074188 | None:intergenic | 50.0% | |
| GACCGTGGTATTAAGGATCG+TGG | - | chr8_4:49074169-49074188 | None:intergenic | 50.0% | |
| ! | AAGGTCTAGGACCACGACTG+TGG | - | chr8_4:49074253-49074272 | None:intergenic | 55.0% |
| TCAGCTTCAATGGCTCCACC+AGG | - | chr8_4:49074442-49074461 | None:intergenic | 55.0% | |
| !! | AAGTTGACTTGCAGGGGAGG+TGG | - | chr8_4:49074500-49074519 | None:intergenic | 55.0% |
| !! | CACAAGTTGACTTGCAGGGG+AGG | - | chr8_4:49074503-49074522 | None:intergenic | 55.0% |
| CTCCCCTGCAAGTCAACTTG+TGG | + | chr8_4:49074501-49074520 | Msa1330040:CDS | 55.0% | |
| ! | AAGGTCTAGGACCACGACTG+TGG | - | chr8_4:49074253-49074272 | None:intergenic | 55.0% |
| TCAGCTTCAATGGCTCCACC+AGG | - | chr8_4:49074442-49074461 | None:intergenic | 55.0% | |
| !! | AAGTTGACTTGCAGGGGAGG+TGG | - | chr8_4:49074500-49074519 | None:intergenic | 55.0% |
| !! | CACAAGTTGACTTGCAGGGG+AGG | - | chr8_4:49074503-49074522 | None:intergenic | 55.0% |
| CTCCCCTGCAAGTCAACTTG+TGG | + | chr8_4:49074501-49074520 | Msa1330040:CDS | 55.0% | |
| GTACGTCTCAGCCACAGTCG+TGG | + | chr8_4:49074239-49074258 | Msa1330040:intron | 60.0% | |
| GACTTGCAGGGGAGGTGGTA+GGG | - | chr8_4:49074495-49074514 | None:intergenic | 60.0% | |
| ! | TGACTTGCAGGGGAGGTGGT+AGG | - | chr8_4:49074496-49074515 | None:intergenic | 60.0% |
| GTACGTCTCAGCCACAGTCG+TGG | + | chr8_4:49074239-49074258 | Msa1330040:intron | 60.0% | |
| GACTTGCAGGGGAGGTGGTA+GGG | - | chr8_4:49074495-49074514 | None:intergenic | 60.0% | |
| ! | TGACTTGCAGGGGAGGTGGT+AGG | - | chr8_4:49074496-49074515 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49073476 | 49074594 | 49073476 | ID=Msa1330040;Name=Msa1330040 |
| chr8_4 | mRNA | 49073476 | 49074594 | 49073476 | ID=Msa1330040-mRNA-1;Parent=Msa1330040;Name=Msa1330040-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|0|2|0|117 |
| chr8_4 | exon | 49073476 | 49073659 | 49073476 | ID=Msa1330040-mRNA-1:exon:14142;Parent=Msa1330040-mRNA-1 |
| chr8_4 | exon | 49074428 | 49074594 | 49074428 | ID=Msa1330040-mRNA-1:exon:14143;Parent=Msa1330040-mRNA-1 |
| chr8_4 | CDS | 49073476 | 49073659 | 49073476 | ID=Msa1330040-mRNA-1:cds;Parent=Msa1330040-mRNA-1 |
| chr8_4 | CDS | 49074428 | 49074594 | 49074428 | ID=Msa1330040-mRNA-1:cds;Parent=Msa1330040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
