Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331180 | A0A072UQF4 | 94.643 | 616 | 29 | 3 | 1 | 614 | 1 | 614 | 0.0 | 1179 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1331180 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331180 | MtrunA17_Chr4g0061801 | 94.643 | 616 | 29 | 3 | 1 | 614 | 1 | 614 | 0.0 | 1179 |
| Msa1331180 | MtrunA17_Chr7g0271951 | 42.405 | 158 | 85 | 4 | 32 | 187 | 426 | 579 | 4.88e-34 | 138 |
| Msa1331180 | MtrunA17_Chr7g0271951 | 43.000 | 100 | 54 | 2 | 512 | 609 | 794 | 892 | 1.43e-13 | 74.3 |
| Msa1331180 | MtrunA17_Chr8g0388341 | 34.426 | 183 | 86 | 10 | 32 | 189 | 34 | 207 | 9.76e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331180 | AT3G05670.3 | 33.091 | 275 | 169 | 8 | 32 | 297 | 413 | 681 | 3.86e-36 | 145 |
| Msa1331180 | AT3G05670.1 | 33.091 | 275 | 169 | 8 | 32 | 297 | 413 | 681 | 3.86e-36 | 145 |
| Msa1331180 | AT3G05670.2 | 33.091 | 275 | 169 | 8 | 32 | 297 | 413 | 681 | 3.86e-36 | 145 |
| Msa1331180 | AT4G10930.2 | 29.193 | 161 | 82 | 7 | 32 | 165 | 31 | 186 | 6.53e-12 | 69.3 |
| Msa1331180 | AT4G10930.1 | 29.193 | 161 | 82 | 7 | 32 | 165 | 31 | 186 | 6.71e-12 | 69.3 |
Find 153 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACTGCTTCGTGAAAAT+TGG | 0.164253 | 8_4:+50626702 | Msa1331180:CDS |
| TTTCAATTTCTTTACCATTT+AGG | 0.199036 | 8_4:-50628228 | None:intergenic |
| TGAATTCTACTTGTTCTTCT+AGG | 0.221047 | 8_4:-50626980 | None:intergenic |
| CTTTAAGAAGTGGTAAATTA+AGG | 0.236521 | 8_4:+50626729 | Msa1331180:CDS |
| CTGATATTCCTTTACTTGAT+AGG | 0.247121 | 8_4:+50626621 | Msa1331180:CDS |
| ATCCTTCTAAATGAGTATTA+TGG | 0.255331 | 8_4:-50627243 | None:intergenic |
| GTCACACTTCTCCTGCATTT+TGG | 0.285478 | 8_4:-50627116 | None:intergenic |
| TTAGCTATCAATAAACAATT+AGG | 0.302117 | 8_4:+50627553 | Msa1331180:CDS |
| GTACATAAAGTCTAATGTTC+TGG | 0.310120 | 8_4:-50627092 | None:intergenic |
| AAAGATCACATATTAGTATA+AGG | 0.325967 | 8_4:-50626358 | None:intergenic |
| TTAAATATTGTGAGAGGAAC+AGG | 0.351776 | 8_4:+50626539 | Msa1331180:CDS |
| ACTTCTGAAACTGAAGATTA+TGG | 0.364745 | 8_4:-50627950 | None:intergenic |
| AAAGCATTGCCGGCAACAAT+TGG | 0.364853 | 8_4:-50627985 | None:intergenic |
| TTCTGCTCAGAAGACAAATT+CGG | 0.369067 | 8_4:-50625081 | None:intergenic |
| ATTAGATGATTCACATTCAA+TGG | 0.372803 | 8_4:+50626826 | Msa1331180:CDS |
| GAGCTTTGTGGGTACCAGTA+TGG | 0.384508 | 8_4:-50627294 | None:intergenic |
| ATTTAATGCCCAATTGTTGC+CGG | 0.388879 | 8_4:+50627976 | Msa1331180:CDS |
| TTGCCTTGCAACTACCTTGA+AGG | 0.388899 | 8_4:-50627841 | None:intergenic |
| AATTTAGTTTAACAAGAGAT+TGG | 0.390354 | 8_4:-50627522 | None:intergenic |
| CGAAGACATGAAAGCATTGC+CGG | 0.390475 | 8_4:-50627995 | None:intergenic |
| CTTCGTTTGCATCATGGAAT+GGG | 0.391668 | 8_4:+50625286 | Msa1331180:CDS |
| GGCATTTCTTTCATTGTGAC+AGG | 0.396150 | 8_4:-50627317 | None:intergenic |
| AACCATAATACTCATTTAGA+AGG | 0.398353 | 8_4:+50627241 | Msa1331180:CDS |
| CGACACAGGTTTCTTACCTT+CGG | 0.400888 | 8_4:-50626654 | None:intergenic |
| AATATCCACATCCTTCTTAG+AGG | 0.404123 | 8_4:-50627422 | None:intergenic |
| TTGCCTGAGGCCCTAAGCTA+AGG | 0.405798 | 8_4:-50628146 | None:intergenic |
| ATACTCATTTAGAAGGATAC+AGG | 0.406220 | 8_4:+50627248 | Msa1331180:CDS |
| GAAAACAATAATCACTGAAA+TGG | 0.406971 | 8_4:-50628093 | None:intergenic |
| TTCAGGTTGCCCCTTAGCTT+AGG | 0.407433 | 8_4:+50628135 | Msa1331180:three_prime_UTR |
| GCTTCGTTTGCATCATGGAA+TGG | 0.409819 | 8_4:+50625285 | Msa1331180:CDS |
| CATTGTGACAGGGAGCTTTG+TGG | 0.412689 | 8_4:-50627306 | None:intergenic |
| AAGAGGTTGGCTAAAAGCTT+CGG | 0.412773 | 8_4:+50627457 | Msa1331180:CDS |
| TGATATTCCTTTACTTGATA+GGG | 0.413112 | 8_4:+50626622 | Msa1331180:CDS |
| ACAAAGGCAGTCTGCTTACT+TGG | 0.414772 | 8_4:+50627348 | Msa1331180:CDS |
| AAGAACAAGTAGAATTCAAC+AGG | 0.416343 | 8_4:+50626985 | Msa1331180:CDS |
| CGTTCAGCATTAGAATCAAC+AGG | 0.416387 | 8_4:-50626299 | None:intergenic |
| GGTACCAGTATGGACCTTAC+TGG | 0.418317 | 8_4:-50627284 | None:intergenic |
| TGACAAAACCAATCACCTTC+AGG | 0.418997 | 8_4:-50626428 | None:intergenic |
| GCAACTGTGTAAATAAATTC+AGG | 0.421174 | 8_4:+50628118 | Msa1331180:three_prime_UTR |
| TCAGGTTGCCCCTTAGCTTA+GGG | 0.421397 | 8_4:+50628136 | Msa1331180:three_prime_UTR |
| TAAGATTCCTATTCGCGATC+AGG | 0.423084 | 8_4:+50625403 | Msa1331180:CDS |
| TCCTCTCACAATATTTAAGA+TGG | 0.424076 | 8_4:-50626534 | None:intergenic |
| AGAGGTTGGCTAAAAGCTTC+GGG | 0.425317 | 8_4:+50627458 | Msa1331180:CDS |
| TCATGATTGTGCTGTTTCCC+TGG | 0.425637 | 8_4:+50626448 | Msa1331180:CDS |
| CATAGCAAAACATTTCAATC+TGG | 0.432016 | 8_4:+50626755 | Msa1331180:CDS |
| TATAATTAGCATTAGTCTCC+AGG | 0.433571 | 8_4:-50626466 | None:intergenic |
| GGCAAGCAGCCAAGATGGTA+TGG | 0.433665 | 8_4:-50627869 | None:intergenic |
| ACACCGTTCCTGAAGGTGAT+TGG | 0.439694 | 8_4:+50626420 | Msa1331180:CDS |
| ATTGTGACAGGGAGCTTTGT+GGG | 0.443138 | 8_4:-50627305 | None:intergenic |
| TACATAAAGTCTAATGTTCT+GGG | 0.448158 | 8_4:-50627091 | None:intergenic |
| AAGATGACGTTGACAAAGCT+TGG | 0.449233 | 8_4:+50626921 | Msa1331180:CDS |
| TCTGCTCAGAAGACAAATTC+GGG | 0.455964 | 8_4:-50625080 | None:intergenic |
| CGCAGGTGTCGAAACCTTCA+AGG | 0.466026 | 8_4:+50627827 | Msa1331180:intron |
| ACTGAAGATTATGGTCAGTA+TGG | 0.467842 | 8_4:-50627941 | None:intergenic |
| AAATCATCGGTCTCCGATGT+TGG | 0.470526 | 8_4:+50627165 | Msa1331180:CDS |
| GCTTACTTGGTAACTTCAGT+AGG | 0.472358 | 8_4:+50627361 | Msa1331180:CDS |
| CCATTGGTCTTCCAACCACT+TGG | 0.475316 | 8_4:-50626565 | None:intergenic |
| AATCATCGGTCTCCGATGTT+GGG | 0.475724 | 8_4:+50627166 | Msa1331180:CDS |
| TACGAACGTTTGAGAATCTC+TGG | 0.476070 | 8_4:-50625340 | None:intergenic |
| CACTGTTAATTTAATGTTGG+AGG | 0.484776 | 8_4:+50628172 | Msa1331180:three_prime_UTR |
| TTGCAGCAATCAATTTGTGC+AGG | 0.486323 | 8_4:-50625251 | None:intergenic |
| GCAAATTCACGACCACCGTC+TGG | 0.486453 | 8_4:+50625056 | Msa1331180:five_prime_UTR |
| CCGCACTGTTAATTTAATGT+TGG | 0.487345 | 8_4:+50628169 | Msa1331180:three_prime_UTR |
| AGAATGACCTGATCGCGAAT+AGG | 0.488034 | 8_4:-50625410 | None:intergenic |
| GACTAATGCTAATTATATGC+TGG | 0.488179 | 8_4:+50626472 | Msa1331180:CDS |
| AAGTAGAATTCAACAGGAAG+TGG | 0.490243 | 8_4:+50626991 | Msa1331180:CDS |
| TGGGCATCGAGATTCATGTT+TGG | 0.492358 | 8_4:-50625309 | None:intergenic |
| AGACTGCCTTTGTTCCTTCG+AGG | 0.493261 | 8_4:-50627338 | None:intergenic |
| AAATTCCACAGCAAACATCT+TGG | 0.499946 | 8_4:-50625202 | None:intergenic |
| TGGGAGAGAAAAGGCAAAGT+AGG | 0.501891 | 8_4:+50627185 | Msa1331180:CDS |
| GTTGGACTGTGGATTGTTGA+CGG | 0.502066 | 8_4:-50626859 | None:intergenic |
| TGCCTGAGGCCCTAAGCTAA+GGG | 0.502109 | 8_4:-50628145 | None:intergenic |
| TTCTAGGTTTACCATCCTCA+TGG | 0.502370 | 8_4:+50626260 | Msa1331180:intron |
| TTGCCCAGTAAGGTCCATAC+TGG | 0.504719 | 8_4:+50627280 | Msa1331180:CDS |
| GCAAGCCACCCATACCATCT+TGG | 0.510712 | 8_4:+50627860 | Msa1331180:CDS |
| CTGCTCACCCTATCAAGTAA+AGG | 0.512028 | 8_4:-50626629 | None:intergenic |
| GAGAATCTCTGGCGACAAAG+TGG | 0.512531 | 8_4:-50625329 | None:intergenic |
| TTTCAATAAAGAAAAGAGGT+TGG | 0.515495 | 8_4:+50627444 | Msa1331180:CDS |
| ATATTTAAGATGGTTACATC+AGG | 0.520921 | 8_4:-50626524 | None:intergenic |
| AATTGGAATTCTTTAAGAAG+TGG | 0.523493 | 8_4:+50626719 | Msa1331180:CDS |
| AAGCATTGCCGGCAACAATT+GGG | 0.527114 | 8_4:-50627984 | None:intergenic |
| ATGGCTGCATACTGAGTTCG+AGG | 0.528787 | 8_4:-50627922 | None:intergenic |
| GTTAATTTAATGTTGGAGGT+AGG | 0.529861 | 8_4:+50628176 | Msa1331180:three_prime_UTR |
| AATTCTAGTTCTTTATCAAG+TGG | 0.532006 | 8_4:+50626800 | Msa1331180:CDS |
| CTTTATGTACGCCAAAATGC+AGG | 0.532125 | 8_4:+50627105 | Msa1331180:CDS |
| CAATTTCTTTACCATTTAGG+TGG | 0.542032 | 8_4:-50628225 | None:intergenic |
| TGTCGTACAGGAGATGCCAT+TGG | 0.542278 | 8_4:-50626581 | None:intergenic |
| CGATGTTGTCAAGTCGGTGT+TGG | 0.542402 | 8_4:+50628022 | Msa1331180:CDS |
| TTCTCTAGCACCACTGCATG+AGG | 0.543758 | 8_4:-50627023 | None:intergenic |
| GGAACGTCCATTGCCCAGTA+AGG | 0.546548 | 8_4:+50627270 | Msa1331180:CDS |
| CTCCGATGTTGGGAGAGAAA+AGG | 0.553404 | 8_4:+50627176 | Msa1331180:CDS |
| GGAACAGGCAGCCAAGTGGT+TGG | 0.554239 | 8_4:+50626554 | Msa1331180:CDS |
| AAGAAAAGACATCATGCATA+GGG | 0.555505 | 8_4:-50625367 | None:intergenic |
| ATTCAACAGGAAGTGGATGA+TGG | 0.555748 | 8_4:+50626998 | Msa1331180:CDS |
| TAGCGTGTTCACCTCTAAGA+AGG | 0.556066 | 8_4:+50627411 | Msa1331180:CDS |
| GAAGAAAAGACATCATGCAT+AGG | 0.556171 | 8_4:-50625368 | None:intergenic |
| TTGATGCGTTTGTTTGATGT+AGG | 0.559764 | 8_4:-50625137 | None:intergenic |
| GTACCAGTATGGACCTTACT+GGG | 0.561514 | 8_4:-50627283 | None:intergenic |
| TGTGGATTGTTGACGGCTTG+CGG | 0.563674 | 8_4:-50626852 | None:intergenic |
| TTGGCTAAAAGCTTCGGGAA+TGG | 0.564675 | 8_4:+50627463 | Msa1331180:CDS |
| AGAATCTCTGGCGACAAAGT+GGG | 0.566207 | 8_4:-50625328 | None:intergenic |
| TCAAGTAACATGTTGAGTAA+TGG | 0.571263 | 8_4:+50626890 | Msa1331180:CDS |
| GTTCACCTCTAAGAAGGATG+TGG | 0.574677 | 8_4:+50627417 | Msa1331180:CDS |
| CAATGAAAGAAATGCCTCGA+AGG | 0.576414 | 8_4:+50627324 | Msa1331180:CDS |
| GTAGGTTCAGCACCCTCAAG+TGG | 0.578222 | 8_4:+50627379 | Msa1331180:CDS |
| CGCAAGTGTTGTATTTGCGA+TGG | 0.582040 | 8_4:+50626320 | Msa1331180:CDS |
| AGCAAAACATTTCAATCTGG+TGG | 0.582593 | 8_4:+50626758 | Msa1331180:CDS |
| GTATGGACCTTACTGGGCAA+TGG | 0.584739 | 8_4:-50627277 | None:intergenic |
| TAGTCATATTTCCATGAGGA+TGG | 0.586765 | 8_4:-50626271 | None:intergenic |
| TGCAGCAATCAATTTGTGCA+GGG | 0.587281 | 8_4:-50625250 | None:intergenic |
| GCACGCTGGACTTCCGACAC+AGG | 0.591609 | 8_4:-50626668 | None:intergenic |
| AGTAACATGTTGAGTAATGG+TGG | 0.593885 | 8_4:+50626893 | Msa1331180:CDS |
| GGGAGAGAAAAGGCAAAGTA+GGG | 0.594053 | 8_4:+50627186 | Msa1331180:CDS |
| ATTAACAGTGCGGTTGCCTG+AGG | 0.595060 | 8_4:-50628159 | None:intergenic |
| GAAATGCCTCGAAGGAACAA+AGG | 0.602912 | 8_4:+50627332 | Msa1331180:CDS |
| GGAATGGCAAGCAGCCAAGA+TGG | 0.603129 | 8_4:-50627874 | None:intergenic |
| GCAAGCAGCCAAGATGGTAT+GGG | 0.603934 | 8_4:-50627868 | None:intergenic |
| GAACATTACGCAGGGCACGC+TGG | 0.605204 | 8_4:-50626682 | None:intergenic |
| TTTAATGTTGGAGGTAGGCG+TGG | 0.605272 | 8_4:+50628181 | Msa1331180:three_prime_UTR |
| TTGGGCTACACCGTTCCTGA+AGG | 0.607395 | 8_4:+50626413 | Msa1331180:CDS |
| CGTGAACGATGTTGTCAAGT+CGG | 0.608768 | 8_4:+50628016 | Msa1331180:CDS |
| AAACCAATCACCTTCAGGAA+CGG | 0.610160 | 8_4:-50626423 | None:intergenic |
| CCAAGTGGTTGGAAGACCAA+TGG | 0.614722 | 8_4:+50626565 | Msa1331180:CDS |
| ATAATTAGCATTAGTCTCCA+GGG | 0.614978 | 8_4:-50626465 | None:intergenic |
| GCATTTCTTTCATTGTGACA+GGG | 0.617083 | 8_4:-50627316 | None:intergenic |
| TCTCTAGCACCACTGCATGA+GGG | 0.624636 | 8_4:-50627022 | None:intergenic |
| AGCAGCCAAGATGGTATGGG+TGG | 0.626338 | 8_4:-50627865 | None:intergenic |
| ACCATCTTAAATATTGTGAG+AGG | 0.626569 | 8_4:+50626533 | Msa1331180:CDS |
| CCTCATGGAAATATGACTAG+TGG | 0.627653 | 8_4:+50626275 | Msa1331180:CDS |
| AAGACAAATTCGGGACCAGA+CGG | 0.632549 | 8_4:-50625071 | None:intergenic |
| GCAAAGTAGGGTCTTGTGTG+AGG | 0.638155 | 8_4:+50627198 | Msa1331180:CDS |
| TAAAGGAATATCAGAAGACA+AGG | 0.638369 | 8_4:-50626612 | None:intergenic |
| AGCTTGGAAAATGATGCGTA+AGG | 0.638683 | 8_4:+50626937 | Msa1331180:CDS |
| GAAGCAGTTGAACATTACGC+AGG | 0.639695 | 8_4:-50626691 | None:intergenic |
| TACTCATTTAGAAGGATACA+GGG | 0.641504 | 8_4:+50627249 | Msa1331180:CDS |
| AAACCTTCAAGGTAGTTGCA+AGG | 0.642576 | 8_4:+50627838 | Msa1331180:CDS |
| CGAAGGTAAGAAACCTGTGT+CGG | 0.644076 | 8_4:+50626655 | Msa1331180:CDS |
| GATAGGGTGAGCAGATCCGA+AGG | 0.646279 | 8_4:+50626638 | Msa1331180:CDS |
| ACAAAATGTTGAGCTAAAAG+CGG | 0.648538 | 8_4:+50626499 | Msa1331180:CDS |
| GATGATGGTCCCTCATGCAG+TGG | 0.659027 | 8_4:+50627013 | Msa1331180:CDS |
| AAGCAGTTGAACATTACGCA+GGG | 0.660055 | 8_4:-50626690 | None:intergenic |
| GCCTGAGGCCCTAAGCTAAG+GGG | 0.662805 | 8_4:-50628144 | None:intergenic |
| TGATTGAGCACGTTGGACTG+TGG | 0.664126 | 8_4:-50626870 | None:intergenic |
| TGTTACTTGATTGAGCACGT+TGG | 0.679662 | 8_4:-50626877 | None:intergenic |
| AATAACCAAGATGTTTGCTG+TGG | 0.680160 | 8_4:+50625197 | Msa1331180:CDS |
| TTAGATTCTGGGCAACTACG+AGG | 0.687829 | 8_4:-50627058 | None:intergenic |
| TTTGTTTGATGTAGGCAACG+AGG | 0.700541 | 8_4:-50625129 | None:intergenic |
| ACAAATTCGGGACCAGACGG+TGG | 0.701984 | 8_4:-50625068 | None:intergenic |
| GGAATTTGCTACATCGAACG+CGG | 0.706610 | 8_4:+50625218 | Msa1331180:CDS |
| AGGAATCTTAACATCCCGTG+AGG | 0.714302 | 8_4:-50625390 | None:intergenic |
| CCACTAGTCATATTTCCATG+AGG | 0.716434 | 8_4:-50626275 | None:intergenic |
| GAGAGGAACAGGCAGCCAAG+TGG | 0.717171 | 8_4:+50626550 | Msa1331180:CDS |
| CCAACATTAAATTAACAGTG+CGG | 0.728484 | 8_4:-50628169 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAATAATGCACTAAT+TGG | + | chr8_4:50625838-50625857 | Msa1331180:intron | 15.0% |
| !!! | ATAAAAGGAATAAAATTTTG+AGG | + | chr8_4:50626021-50626040 | Msa1331180:intron | 15.0% |
| !!! | TAAAAGGAATAAAATTTTGA+GGG | + | chr8_4:50626022-50626041 | Msa1331180:intron | 15.0% |
| !!! | ATATTTTCAATAAAGAAAAG+AGG | + | chr8_4:50627440-50627459 | Msa1331180:CDS | 15.0% |
| !! | AATACTTTCATTCAATTAAA+AGG | - | chr8_4:50627787-50627806 | None:intergenic | 15.0% |
| !!! | TTTTTCACTATCATTAGTTT+AGG | - | chr8_4:50625658-50625677 | None:intergenic | 20.0% |
| !! | AAGAAAAAAATGACAACTAT+CGG | + | chr8_4:50625861-50625880 | Msa1331180:intron | 20.0% |
| !! | TAGATACATTTGACAATATT+TGG | + | chr8_4:50625962-50625981 | Msa1331180:intron | 20.0% |
| !! | AGATACATTTGACAATATTT+GGG | + | chr8_4:50625963-50625982 | Msa1331180:intron | 20.0% |
| !!! | AAAAGGAATAAAATTTTGAG+GGG | + | chr8_4:50626023-50626042 | Msa1331180:intron | 20.0% |
| !! | ATAGACAACAAAATTATGAA+AGG | - | chr8_4:50626126-50626145 | None:intergenic | 20.0% |
| !! | AAAGATCACATATTAGTATA+AGG | - | chr8_4:50626361-50626380 | None:intergenic | 20.0% |
| !!! | ATGATTTTCCAAATTTTTTG+GGG | - | chr8_4:50627152-50627171 | None:intergenic | 20.0% |
| !!! | GATGATTTTCCAAATTTTTT+GGG | - | chr8_4:50627153-50627172 | None:intergenic | 20.0% |
| !! | CAAAAAATTTGGAAAATCAT+CGG | + | chr8_4:50627152-50627171 | Msa1331180:CDS | 20.0% |
| !!! | AATTTAGTTTAACAAGAGAT+TGG | - | chr8_4:50627525-50627544 | None:intergenic | 20.0% |
| !! | TTAGCTATCAATAAACAATT+AGG | + | chr8_4:50627553-50627572 | Msa1331180:CDS | 20.0% |
| !! | TTTCAATTTCTTTACCATTT+AGG | - | chr8_4:50628231-50628250 | None:intergenic | 20.0% |
| ! | AGAAAAAAATGACAACTATC+GGG | + | chr8_4:50625862-50625881 | Msa1331180:intron | 25.0% |
| ! | ATATTGTCAAATGTATCTAG+TGG | - | chr8_4:50625961-50625980 | None:intergenic | 25.0% |
| ! | GATACATTTGACAATATTTG+GGG | + | chr8_4:50625964-50625983 | Msa1331180:intron | 25.0% |
| ! | TATATAGTAAAACACTCTTG+AGG | + | chr8_4:50625997-50626016 | Msa1331180:intron | 25.0% |
| ! | GTCTATATATTATTTACTGC+TGG | + | chr8_4:50626140-50626159 | Msa1331180:intron | 25.0% |
| ! | TAATGTTATAAGTAACCAAC+AGG | + | chr8_4:50626206-50626225 | Msa1331180:intron | 25.0% |
| !! | TAAAAAAATCATTAGCCTGT+TGG | - | chr8_4:50626224-50626243 | None:intergenic | 25.0% |
| !! | ATATTTAAGATGGTTACATC+AGG | - | chr8_4:50626527-50626546 | None:intergenic | 25.0% |
| ! | TGATATTCCTTTACTTGATA+GGG | + | chr8_4:50626622-50626641 | Msa1331180:CDS | 25.0% |
| !! | AATTGGAATTCTTTAAGAAG+TGG | + | chr8_4:50626719-50626738 | Msa1331180:CDS | 25.0% |
| !! | CTTTAAGAAGTGGTAAATTA+AGG | + | chr8_4:50626729-50626748 | Msa1331180:CDS | 25.0% |
| !!! | AATTCTAGTTCTTTATCAAG+TGG | + | chr8_4:50626800-50626819 | Msa1331180:CDS | 25.0% |
| ! | ATTAGATGATTCACATTCAA+TGG | + | chr8_4:50626826-50626845 | Msa1331180:CDS | 25.0% |
| !!! | GTTGTTGTTTTTTAGATTCT+GGG | - | chr8_4:50627072-50627091 | None:intergenic | 25.0% |
| ! | TACATAAAGTCTAATGTTCT+GGG | - | chr8_4:50627094-50627113 | None:intergenic | 25.0% |
| !!! | TGATTTTCCAAATTTTTTGG+GGG | - | chr8_4:50627151-50627170 | None:intergenic | 25.0% |
| !! | CGATGATTTTCCAAATTTTT+TGG | - | chr8_4:50627154-50627173 | None:intergenic | 25.0% |
| ! | AACCATAATACTCATTTAGA+AGG | + | chr8_4:50627241-50627260 | Msa1331180:CDS | 25.0% |
| ! | ATCCTTCTAAATGAGTATTA+TGG | - | chr8_4:50627246-50627265 | None:intergenic | 25.0% |
| ! | TTTCAATAAAGAAAAGAGGT+TGG | + | chr8_4:50627444-50627463 | Msa1331180:CDS | 25.0% |
| ! | AATGATCATGTAAATATGGA+GGG | - | chr8_4:50627610-50627629 | None:intergenic | 25.0% |
| ! | CAACAATGATCATGTAAATA+TGG | - | chr8_4:50627614-50627633 | None:intergenic | 25.0% |
| ! | CATATTTACATGATCATTGT+TGG | + | chr8_4:50627612-50627631 | Msa1331180:intron | 25.0% |
| ! | GAAAACAATAATCACTGAAA+TGG | - | chr8_4:50628096-50628115 | None:intergenic | 25.0% |
| ! | TTCTTCTTCAGTTTTCACTT+CGG | - | chr8_4:50625165-50625184 | None:intergenic | 30.0% |
| TGCAAACGAAGCAAAAATAA+TGG | - | chr8_4:50625277-50625296 | None:intergenic | 30.0% | |
| AAGAAAAGACATCATGCATA+GGG | - | chr8_4:50625370-50625389 | None:intergenic | 30.0% | |
| TGTCAACAATTCATGTGTTA+GGG | + | chr8_4:50625539-50625558 | Msa1331180:intron | 30.0% | |
| TTAGTTTAGGAATTCACTAG+CGG | - | chr8_4:50625645-50625664 | None:intergenic | 30.0% | |
| ATCTTGACTGAAATTGTAGA+GGG | + | chr8_4:50625685-50625704 | Msa1331180:intron | 30.0% | |
| TGAAGAACAAAGTCAAATCT+GGG | + | chr8_4:50625746-50625765 | Msa1331180:intron | 30.0% | |
| AAACACTCTTGAGGAATAAA+AGG | + | chr8_4:50626006-50626025 | Msa1331180:intron | 30.0% | |
| ! | GTCTAAAATCTAAACATTCG+CGG | - | chr8_4:50626080-50626099 | None:intergenic | 30.0% |
| ! | ATAATTAGCATTAGTCTCCA+GGG | - | chr8_4:50626468-50626487 | None:intergenic | 30.0% |
| ! | TATAATTAGCATTAGTCTCC+AGG | - | chr8_4:50626469-50626488 | None:intergenic | 30.0% |
| GACTAATGCTAATTATATGC+TGG | + | chr8_4:50626472-50626491 | Msa1331180:CDS | 30.0% | |
| !!! | CTTTTAGCTCAACATTTTGT+TGG | - | chr8_4:50626499-50626518 | None:intergenic | 30.0% |
| ACAAAATGTTGAGCTAAAAG+CGG | + | chr8_4:50626499-50626518 | Msa1331180:CDS | 30.0% | |
| ACCATCTTAAATATTGTGAG+AGG | + | chr8_4:50626533-50626552 | Msa1331180:CDS | 30.0% | |
| TCCTCTCACAATATTTAAGA+TGG | - | chr8_4:50626537-50626556 | None:intergenic | 30.0% | |
| TTAAATATTGTGAGAGGAAC+AGG | + | chr8_4:50626539-50626558 | Msa1331180:CDS | 30.0% | |
| TAAAGGAATATCAGAAGACA+AGG | - | chr8_4:50626615-50626634 | None:intergenic | 30.0% | |
| CTGATATTCCTTTACTTGAT+AGG | + | chr8_4:50626621-50626640 | Msa1331180:CDS | 30.0% | |
| ! | CAGATTGAAATGTTTTGCTA+TGG | - | chr8_4:50626757-50626776 | None:intergenic | 30.0% |
| CATAGCAAAACATTTCAATC+TGG | + | chr8_4:50626755-50626774 | Msa1331180:CDS | 30.0% | |
| TCAAGTAACATGTTGAGTAA+TGG | + | chr8_4:50626890-50626909 | Msa1331180:CDS | 30.0% | |
| TGAATTCTACTTGTTCTTCT+AGG | - | chr8_4:50626983-50627002 | None:intergenic | 30.0% | |
| AAGAACAAGTAGAATTCAAC+AGG | + | chr8_4:50626985-50627004 | Msa1331180:CDS | 30.0% | |
| !!! | GGTTGTTGTTTTTTAGATTC+TGG | - | chr8_4:50627073-50627092 | None:intergenic | 30.0% |
| GTACATAAAGTCTAATGTTC+TGG | - | chr8_4:50627095-50627114 | None:intergenic | 30.0% | |
| ATACTCATTTAGAAGGATAC+AGG | + | chr8_4:50627248-50627267 | Msa1331180:CDS | 30.0% | |
| TACTCATTTAGAAGGATACA+GGG | + | chr8_4:50627249-50627268 | Msa1331180:CDS | 30.0% | |
| ATGATCATGTAAATATGGAG+GGG | - | chr8_4:50627609-50627628 | None:intergenic | 30.0% | |
| CAATGATCATGTAAATATGG+AGG | - | chr8_4:50627611-50627630 | None:intergenic | 30.0% | |
| !! | AAATGGATTGTAAAAGTGTG+TGG | - | chr8_4:50627662-50627681 | None:intergenic | 30.0% |
| ! | ACACTTTTACAATCCATTTG+TGG | + | chr8_4:50627663-50627682 | Msa1331180:intron | 30.0% |
| ! | TATATTAGACTTTTGCTGCT+CGG | - | chr8_4:50627898-50627917 | None:intergenic | 30.0% |
| !! | ACTTCTGAAACTGAAGATTA+TGG | - | chr8_4:50627953-50627972 | None:intergenic | 30.0% |
| GCAACTGTGTAAATAAATTC+AGG | + | chr8_4:50628118-50628137 | Msa1331180:three_prime_UTR | 30.0% | |
| CCAACATTAAATTAACAGTG+CGG | - | chr8_4:50628172-50628191 | None:intergenic | 30.0% | |
| CACTGTTAATTTAATGTTGG+AGG | + | chr8_4:50628172-50628191 | Msa1331180:three_prime_UTR | 30.0% | |
| GTTAATTTAATGTTGGAGGT+AGG | + | chr8_4:50628176-50628195 | Msa1331180:three_prime_UTR | 30.0% | |
| !! | AGTTTACTTTTCCACCTAAA+TGG | + | chr8_4:50628214-50628233 | Msa1331180:three_prime_UTR | 30.0% |
| CAATTTCTTTACCATTTAGG+TGG | - | chr8_4:50628228-50628247 | None:intergenic | 30.0% | |
| TTCTGCTCAGAAGACAAATT+CGG | - | chr8_4:50625084-50625103 | None:intergenic | 35.0% | |
| TTGATGCGTTTGTTTGATGT+AGG | - | chr8_4:50625140-50625159 | None:intergenic | 35.0% | |
| ! | AATAACCAAGATGTTTGCTG+TGG | + | chr8_4:50625197-50625216 | Msa1331180:CDS | 35.0% |
| AAATTCCACAGCAAACATCT+TGG | - | chr8_4:50625205-50625224 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTCGTTTGCATCA+TGG | + | chr8_4:50625280-50625299 | Msa1331180:CDS | 35.0% |
| GAAGAAAAGACATCATGCAT+AGG | - | chr8_4:50625371-50625390 | None:intergenic | 35.0% | |
| ! | ATGATGTCTTTTCTTCCTCA+CGG | + | chr8_4:50625375-50625394 | Msa1331180:CDS | 35.0% |
| TCAAAATTGCATGAAACCCT+AGG | + | chr8_4:50625449-50625468 | Msa1331180:intron | 35.0% | |
| AATGAAGTCTAGCTAACCTA+GGG | - | chr8_4:50625468-50625487 | None:intergenic | 35.0% | |
| TAATGAAGTCTAGCTAACCT+AGG | - | chr8_4:50625469-50625488 | None:intergenic | 35.0% | |
| CATGAATTGTTGACAGCTAT+GGG | - | chr8_4:50625534-50625553 | None:intergenic | 35.0% | |
| ACATGAATTGTTGACAGCTA+TGG | - | chr8_4:50625535-50625554 | None:intergenic | 35.0% | |
| CTGTCAACAATTCATGTGTT+AGG | + | chr8_4:50625538-50625557 | Msa1331180:intron | 35.0% | |
| TAGTTTAGGAATTCACTAGC+GGG | - | chr8_4:50625644-50625663 | None:intergenic | 35.0% | |
| GATCTTGACTGAAATTGTAG+AGG | + | chr8_4:50625684-50625703 | Msa1331180:intron | 35.0% | |
| GTGAAGAACAAAGTCAAATC+TGG | + | chr8_4:50625745-50625764 | Msa1331180:intron | 35.0% | |
| CGATTCCTCTCAAAAACTAT+CGG | + | chr8_4:50625887-50625906 | Msa1331180:intron | 35.0% | |
| GATTCCTCTCAAAAACTATC+GGG | + | chr8_4:50625888-50625907 | Msa1331180:intron | 35.0% | |
| TTGTCAAATGTATCTAGTGG+CGG | - | chr8_4:50625958-50625977 | None:intergenic | 35.0% | |
| !! | TAAAATTTTGAGGGGAGACA+TGG | + | chr8_4:50626031-50626050 | Msa1331180:intron | 35.0% |
| TAGTCATATTTCCATGAGGA+TGG | - | chr8_4:50626274-50626293 | None:intergenic | 35.0% | |
| ! | GTTTCACATACGTTTTGTGT+TGG | + | chr8_4:50626389-50626408 | Msa1331180:CDS | 35.0% |
| ! | ACATACGTTTTGTGTTGGAT+TGG | + | chr8_4:50626394-50626413 | Msa1331180:CDS | 35.0% |
| ! | CATACGTTTTGTGTTGGATT+GGG | + | chr8_4:50626395-50626414 | Msa1331180:CDS | 35.0% |
| !! | AAGGAATTGTTTTGTCGTAC+AGG | - | chr8_4:50626596-50626615 | None:intergenic | 35.0% |
| TTCAACTGCTTCGTGAAAAT+TGG | + | chr8_4:50626702-50626721 | Msa1331180:CDS | 35.0% | |
| AGCAAAACATTTCAATCTGG+TGG | + | chr8_4:50626758-50626777 | Msa1331180:CDS | 35.0% | |
| AGTAACATGTTGAGTAATGG+TGG | + | chr8_4:50626893-50626912 | Msa1331180:CDS | 35.0% | |
| AAGTAGAATTCAACAGGAAG+TGG | + | chr8_4:50626991-50627010 | Msa1331180:CDS | 35.0% | |
| GCATTTCTTTCATTGTGACA+GGG | - | chr8_4:50627319-50627338 | None:intergenic | 35.0% | |
| ! | CTACTAGATTTTCCACTTGA+GGG | - | chr8_4:50627394-50627413 | None:intergenic | 35.0% |
| AATATCCACATCCTTCTTAG+AGG | - | chr8_4:50627425-50627444 | None:intergenic | 35.0% | |
| TGATCATGTAAATATGGAGG+GGG | - | chr8_4:50627608-50627627 | None:intergenic | 35.0% | |
| GTTTATCTAGTGACCACAAA+TGG | - | chr8_4:50627679-50627698 | None:intergenic | 35.0% | |
| GGTCACTAGATAAACTCATT+TGG | + | chr8_4:50627684-50627703 | Msa1331180:intron | 35.0% | |
| ATGAGTATTCAGCAGTAACA+TGG | - | chr8_4:50627735-50627754 | None:intergenic | 35.0% | |
| GTCATATGCATGCTAATGAA+TGG | - | chr8_4:50627762-50627781 | None:intergenic | 35.0% | |
| ACTGAAGATTATGGTCAGTA+TGG | - | chr8_4:50627944-50627963 | None:intergenic | 35.0% | |
| ATTTAATGCCCAATTGTTGC+CGG | + | chr8_4:50627976-50627995 | Msa1331180:CDS | 35.0% | |
| CCGCACTGTTAATTTAATGT+TGG | + | chr8_4:50628169-50628188 | Msa1331180:three_prime_UTR | 35.0% | |
| TCTGCTCAGAAGACAAATTC+GGG | - | chr8_4:50625083-50625102 | None:intergenic | 40.0% | |
| TTTGTTTGATGTAGGCAACG+AGG | - | chr8_4:50625132-50625151 | None:intergenic | 40.0% | |
| TGCAGCAATCAATTTGTGCA+GGG | - | chr8_4:50625253-50625272 | None:intergenic | 40.0% | |
| TTGCAGCAATCAATTTGTGC+AGG | - | chr8_4:50625254-50625273 | None:intergenic | 40.0% | |
| CTTCGTTTGCATCATGGAAT+GGG | + | chr8_4:50625286-50625305 | Msa1331180:CDS | 40.0% | |
| TACGAACGTTTGAGAATCTC+TGG | - | chr8_4:50625343-50625362 | None:intergenic | 40.0% | |
| ! | TGATGTCTTTTCTTCCTCAC+GGG | + | chr8_4:50625376-50625395 | Msa1331180:CDS | 40.0% |
| TAAGATTCCTATTCGCGATC+AGG | + | chr8_4:50625403-50625422 | Msa1331180:CDS | 40.0% | |
| GCTAGACTTCATTAAGACCT+AGG | + | chr8_4:50625475-50625494 | Msa1331180:intron | 40.0% | |
| ! | ATAAAAAAGAGCGCACTCCT+AGG | - | chr8_4:50625495-50625514 | None:intergenic | 40.0% |
| !!! | TGCGCTCTTTTTTATGTCTC+AGG | + | chr8_4:50625500-50625519 | Msa1331180:intron | 40.0% |
| !!! | GCGCTCTTTTTTATGTCTCA+GGG | + | chr8_4:50625501-50625520 | Msa1331180:intron | 40.0% |
| CAACAATTCATGTGTTAGGG+AGG | + | chr8_4:50625542-50625561 | Msa1331180:intron | 40.0% | |
| TACAGAGCTTTGCCTTCAAT+TGG | + | chr8_4:50625569-50625588 | Msa1331180:intron | 40.0% | |
| ACAGAGCTTTGCCTTCAATT+GGG | + | chr8_4:50625570-50625589 | Msa1331180:intron | 40.0% | |
| AGTTTAGGAATTCACTAGCG+GGG | - | chr8_4:50625643-50625662 | None:intergenic | 40.0% | |
| AAAGTCAAATCTGGGTGTAG+TGG | + | chr8_4:50625754-50625773 | Msa1331180:intron | 40.0% | |
| TACTGCTGGTGATCAATGAA+CGG | + | chr8_4:50626154-50626173 | Msa1331180:intron | 40.0% | |
| TTCTAGGTTTACCATCCTCA+TGG | + | chr8_4:50626260-50626279 | Msa1331180:intron | 40.0% | |
| CCACTAGTCATATTTCCATG+AGG | - | chr8_4:50626278-50626297 | None:intergenic | 40.0% | |
| CCTCATGGAAATATGACTAG+TGG | + | chr8_4:50626275-50626294 | Msa1331180:CDS | 40.0% | |
| CGTTCAGCATTAGAATCAAC+AGG | - | chr8_4:50626302-50626321 | None:intergenic | 40.0% | |
| AAACCAATCACCTTCAGGAA+CGG | - | chr8_4:50626426-50626445 | None:intergenic | 40.0% | |
| TGACAAAACCAATCACCTTC+AGG | - | chr8_4:50626431-50626450 | None:intergenic | 40.0% | |
| AAGCAGTTGAACATTACGCA+GGG | - | chr8_4:50626693-50626712 | None:intergenic | 40.0% | |
| ! | TGTTACTTGATTGAGCACGT+TGG | - | chr8_4:50626880-50626899 | None:intergenic | 40.0% |
| AAGATGACGTTGACAAAGCT+TGG | + | chr8_4:50626921-50626940 | Msa1331180:CDS | 40.0% | |
| AGCTTGGAAAATGATGCGTA+AGG | + | chr8_4:50626937-50626956 | Msa1331180:CDS | 40.0% | |
| ATTCAACAGGAAGTGGATGA+TGG | + | chr8_4:50626998-50627017 | Msa1331180:CDS | 40.0% | |
| CTTTATGTACGCCAAAATGC+AGG | + | chr8_4:50627105-50627124 | Msa1331180:CDS | 40.0% | |
| CTCTTGTCCCCCAAAAAATT+TGG | + | chr8_4:50627141-50627160 | Msa1331180:CDS | 40.0% | |
| GGCATTTCTTTCATTGTGAC+AGG | - | chr8_4:50627320-50627339 | None:intergenic | 40.0% | |
| CAATGAAAGAAATGCCTCGA+AGG | + | chr8_4:50627324-50627343 | Msa1331180:CDS | 40.0% | |
| ! | GCTTACTTGGTAACTTCAGT+AGG | + | chr8_4:50627361-50627380 | Msa1331180:CDS | 40.0% |
| ! | GCTACTAGATTTTCCACTTG+AGG | - | chr8_4:50627395-50627414 | None:intergenic | 40.0% |
| ! | AAGAGGTTGGCTAAAAGCTT+CGG | + | chr8_4:50627457-50627476 | Msa1331180:CDS | 40.0% |
| AAACCTTCAAGGTAGTTGCA+AGG | + | chr8_4:50627838-50627857 | Msa1331180:CDS | 40.0% | |
| !! | AAGTCGGTGTTGGAAAAAGT+GGG | + | chr8_4:50628032-50628051 | Msa1331180:CDS | 40.0% |
| AAGACAAATTCGGGACCAGA+CGG | - | chr8_4:50625074-50625093 | None:intergenic | 45.0% | |
| !! | GGAATTTGCTACATCGAACG+CGG | + | chr8_4:50625218-50625237 | Msa1331180:CDS | 45.0% |
| GCTTCGTTTGCATCATGGAA+TGG | + | chr8_4:50625285-50625304 | Msa1331180:CDS | 45.0% | |
| !! | TGGGCATCGAGATTCATGTT+TGG | - | chr8_4:50625312-50625331 | None:intergenic | 45.0% |
| AGAATCTCTGGCGACAAAGT+GGG | - | chr8_4:50625331-50625350 | None:intergenic | 45.0% | |
| AGGAATCTTAACATCCCGTG+AGG | - | chr8_4:50625393-50625412 | None:intergenic | 45.0% | |
| AGAATGACCTGATCGCGAAT+AGG | - | chr8_4:50625413-50625432 | None:intergenic | 45.0% | |
| CAAATCCCACCATCCACTAA+CGG | - | chr8_4:50625597-50625616 | None:intergenic | 45.0% | |
| TTCATTTAACCTCACGTGCG+TGG | + | chr8_4:50625784-50625803 | Msa1331180:intron | 45.0% | |
| !! | CGATCCCGATAGTTTTTGAG+AGG | - | chr8_4:50625895-50625914 | None:intergenic | 45.0% |
| ! | GAGTCTGTTTAGCGAGTTGA+TGG | - | chr8_4:50625927-50625946 | None:intergenic | 45.0% |
| ! | AAATGTATCTAGTGGCGGAG+TGG | - | chr8_4:50625953-50625972 | None:intergenic | 45.0% |
| ! | CGCAAGTGTTGTATTTGCGA+TGG | + | chr8_4:50626320-50626339 | Msa1331180:CDS | 45.0% |
| !! | TCATGATTGTGCTGTTTCCC+TGG | + | chr8_4:50626448-50626467 | Msa1331180:CDS | 45.0% |
| CTGCTCACCCTATCAAGTAA+AGG | - | chr8_4:50626632-50626651 | None:intergenic | 45.0% | |
| CGACACAGGTTTCTTACCTT+CGG | - | chr8_4:50626657-50626676 | None:intergenic | 45.0% | |
| CGAAGGTAAGAAACCTGTGT+CGG | + | chr8_4:50626655-50626674 | Msa1331180:CDS | 45.0% | |
| GAAGCAGTTGAACATTACGC+AGG | - | chr8_4:50626694-50626713 | None:intergenic | 45.0% | |
| ! | GTTGGACTGTGGATTGTTGA+CGG | - | chr8_4:50626862-50626881 | None:intergenic | 45.0% |
| TTAGATTCTGGGCAACTACG+AGG | - | chr8_4:50627061-50627080 | None:intergenic | 45.0% | |
| ! | GTCACACTTCTCCTGCATTT+TGG | - | chr8_4:50627119-50627138 | None:intergenic | 45.0% |
| AAATCATCGGTCTCCGATGT+TGG | + | chr8_4:50627165-50627184 | Msa1331180:CDS | 45.0% | |
| AATCATCGGTCTCCGATGTT+GGG | + | chr8_4:50627166-50627185 | Msa1331180:CDS | 45.0% | |
| ! | TGCCTTTTCTCTCCCAACAT+CGG | - | chr8_4:50627181-50627200 | None:intergenic | 45.0% |
| TGGGAGAGAAAAGGCAAAGT+AGG | + | chr8_4:50627185-50627204 | Msa1331180:CDS | 45.0% | |
| GGGAGAGAAAAGGCAAAGTA+GGG | + | chr8_4:50627186-50627205 | Msa1331180:CDS | 45.0% | |
| GTACCAGTATGGACCTTACT+GGG | - | chr8_4:50627286-50627305 | None:intergenic | 45.0% | |
| ! | ATTGTGACAGGGAGCTTTGT+GGG | - | chr8_4:50627308-50627327 | None:intergenic | 45.0% |
| GAAATGCCTCGAAGGAACAA+AGG | + | chr8_4:50627332-50627351 | Msa1331180:CDS | 45.0% | |
| ACAAAGGCAGTCTGCTTACT+TGG | + | chr8_4:50627348-50627367 | Msa1331180:CDS | 45.0% | |
| ! | TAGCGTGTTCACCTCTAAGA+AGG | + | chr8_4:50627411-50627430 | Msa1331180:CDS | 45.0% |
| ! | GTTCACCTCTAAGAAGGATG+TGG | + | chr8_4:50627417-50627436 | Msa1331180:CDS | 45.0% |
| ! | AGAGGTTGGCTAAAAGCTTC+GGG | + | chr8_4:50627458-50627477 | Msa1331180:CDS | 45.0% |
| TTGGCTAAAAGCTTCGGGAA+TGG | + | chr8_4:50627463-50627482 | Msa1331180:CDS | 45.0% | |
| TTGCCTTGCAACTACCTTGA+AGG | - | chr8_4:50627844-50627863 | None:intergenic | 45.0% | |
| ! | TAGACTTTTGCTGCTCGGAA+TGG | - | chr8_4:50627893-50627912 | None:intergenic | 45.0% |
| ! | AAGCATTGCCGGCAACAATT+GGG | - | chr8_4:50627987-50628006 | None:intergenic | 45.0% |
| !! | AAAGCATTGCCGGCAACAAT+TGG | - | chr8_4:50627988-50628007 | None:intergenic | 45.0% |
| !! | CGAAGACATGAAAGCATTGC+CGG | - | chr8_4:50627998-50628017 | None:intergenic | 45.0% |
| CGTGAACGATGTTGTCAAGT+CGG | + | chr8_4:50628016-50628035 | Msa1331180:CDS | 45.0% | |
| !! | CAAGTCGGTGTTGGAAAAAG+TGG | + | chr8_4:50628031-50628050 | Msa1331180:CDS | 45.0% |
| TTTAATGTTGGAGGTAGGCG+TGG | + | chr8_4:50628181-50628200 | Msa1331180:three_prime_UTR | 45.0% | |
| !! | TAATACTTATTATAAATATA+TGG | - | chr8_4:50625713-50625732 | None:intergenic | 5.0% |
| !!! | TTTTATTTTTTATATTTTCT+AGG | + | chr8_4:50626244-50626263 | Msa1331180:intron | 5.0% |
| GAGAATCTCTGGCGACAAAG+TGG | - | chr8_4:50625332-50625351 | None:intergenic | 50.0% | |
| CCACTAACGGTCCCAATTGA+AGG | - | chr8_4:50625584-50625603 | None:intergenic | 50.0% | |
| CCTTCAATTGGGACCGTTAG+TGG | + | chr8_4:50625581-50625600 | Msa1331180:intron | 50.0% | |
| CAATTGGGACCGTTAGTGGA+TGG | + | chr8_4:50625585-50625604 | Msa1331180:intron | 50.0% | |
| !! | GGATTTGTCCCCGGATTAGT+TGG | + | chr8_4:50625610-50625629 | Msa1331180:intron | 50.0% |
| ACATTCAAACCACGCACGTG+AGG | - | chr8_4:50625796-50625815 | None:intergenic | 50.0% | |
| ACACCGTTCCTGAAGGTGAT+TGG | + | chr8_4:50626420-50626439 | Msa1331180:CDS | 50.0% | |
| !! | CCATTGGTCTTCCAACCACT+TGG | - | chr8_4:50626568-50626587 | None:intergenic | 50.0% |
| CCAAGTGGTTGGAAGACCAA+TGG | + | chr8_4:50626565-50626584 | Msa1331180:CDS | 50.0% | |
| TGTCGTACAGGAGATGCCAT+TGG | - | chr8_4:50626584-50626603 | None:intergenic | 50.0% | |
| ! | TGTGGATTGTTGACGGCTTG+CGG | - | chr8_4:50626855-50626874 | None:intergenic | 50.0% |
| TGATTGAGCACGTTGGACTG+TGG | - | chr8_4:50626873-50626892 | None:intergenic | 50.0% | |
| TCTCTAGCACCACTGCATGA+GGG | - | chr8_4:50627025-50627044 | None:intergenic | 50.0% | |
| TTCTCTAGCACCACTGCATG+AGG | - | chr8_4:50627026-50627045 | None:intergenic | 50.0% | |
| CTCCGATGTTGGGAGAGAAA+AGG | + | chr8_4:50627176-50627195 | Msa1331180:CDS | 50.0% | |
| ! | GCAAAGTAGGGTCTTGTGTG+AGG | + | chr8_4:50627198-50627217 | Msa1331180:CDS | 50.0% |
| GTATGGACCTTACTGGGCAA+TGG | - | chr8_4:50627280-50627299 | None:intergenic | 50.0% | |
| TTGCCCAGTAAGGTCCATAC+TGG | + | chr8_4:50627280-50627299 | Msa1331180:CDS | 50.0% | |
| GGTACCAGTATGGACCTTAC+TGG | - | chr8_4:50627287-50627306 | None:intergenic | 50.0% | |
| ! | GAGCTTTGTGGGTACCAGTA+TGG | - | chr8_4:50627297-50627316 | None:intergenic | 50.0% |
| CATTGTGACAGGGAGCTTTG+TGG | - | chr8_4:50627309-50627328 | None:intergenic | 50.0% | |
| AGACTGCCTTTGTTCCTTCG+AGG | - | chr8_4:50627341-50627360 | None:intergenic | 50.0% | |
| CATGCAGTTGTTTGTCACGC+AGG | + | chr8_4:50627810-50627829 | Msa1331180:intron | 50.0% | |
| GCAAGCAGCCAAGATGGTAT+GGG | - | chr8_4:50627871-50627890 | None:intergenic | 50.0% | |
| ATGGCTGCATACTGAGTTCG+AGG | - | chr8_4:50627925-50627944 | None:intergenic | 50.0% | |
| CGATGTTGTCAAGTCGGTGT+TGG | + | chr8_4:50628022-50628041 | Msa1331180:CDS | 50.0% | |
| !! | TTCAGGTTGCCCCTTAGCTT+AGG | + | chr8_4:50628135-50628154 | Msa1331180:three_prime_UTR | 50.0% |
| ! | TCAGGTTGCCCCTTAGCTTA+GGG | + | chr8_4:50628136-50628155 | Msa1331180:three_prime_UTR | 50.0% |
| ATTAACAGTGCGGTTGCCTG+AGG | - | chr8_4:50628162-50628181 | None:intergenic | 50.0% | |
| GCAAATTCACGACCACCGTC+TGG | + | chr8_4:50625056-50625075 | Msa1331180:five_prime_UTR | 55.0% | |
| ACAAATTCGGGACCAGACGG+TGG | - | chr8_4:50625071-50625090 | None:intergenic | 55.0% | |
| ! | TTGGGACCGTTAGTGGATGG+TGG | + | chr8_4:50625588-50625607 | Msa1331180:intron | 55.0% |
| ! | TGGGACCGTTAGTGGATGGT+GGG | + | chr8_4:50625589-50625608 | Msa1331180:intron | 55.0% |
| !! | TGGATGGTGGGATTTGTCCC+CGG | + | chr8_4:50625601-50625620 | Msa1331180:intron | 55.0% |
| GCACAGGACCAACTAATCCG+GGG | - | chr8_4:50625621-50625640 | None:intergenic | 55.0% | |
| GGCACAGGACCAACTAATCC+GGG | - | chr8_4:50625622-50625641 | None:intergenic | 55.0% | |
| GGGCACAGGACCAACTAATC+CGG | - | chr8_4:50625623-50625642 | None:intergenic | 55.0% | |
| TTGGGCTACACCGTTCCTGA+AGG | + | chr8_4:50626413-50626432 | Msa1331180:CDS | 55.0% | |
| GATAGGGTGAGCAGATCCGA+AGG | + | chr8_4:50626638-50626657 | Msa1331180:CDS | 55.0% | |
| ! | GATGATGGTCCCTCATGCAG+TGG | + | chr8_4:50627013-50627032 | Msa1331180:CDS | 55.0% |
| GGAACGTCCATTGCCCAGTA+AGG | + | chr8_4:50627270-50627289 | Msa1331180:CDS | 55.0% | |
| GTAGGTTCAGCACCCTCAAG+TGG | + | chr8_4:50627379-50627398 | Msa1331180:CDS | 55.0% | |
| !! | CGCAGGTGTCGAAACCTTCA+AGG | + | chr8_4:50627827-50627846 | Msa1331180:intron | 55.0% |
| GCAAGCCACCCATACCATCT+TGG | + | chr8_4:50627860-50627879 | Msa1331180:CDS | 55.0% | |
| AGCAGCCAAGATGGTATGGG+TGG | - | chr8_4:50627868-50627887 | None:intergenic | 55.0% | |
| GGCAAGCAGCCAAGATGGTA+TGG | - | chr8_4:50627872-50627891 | None:intergenic | 55.0% | |
| GGAATGGCAAGCAGCCAAGA+TGG | - | chr8_4:50627877-50627896 | None:intergenic | 55.0% | |
| TGCCTGAGGCCCTAAGCTAA+GGG | - | chr8_4:50628148-50628167 | None:intergenic | 55.0% | |
| TTGCCTGAGGCCCTAAGCTA+AGG | - | chr8_4:50628149-50628168 | None:intergenic | 55.0% | |
| GGAATTCACTAGCGGGGCAC+AGG | - | chr8_4:50625637-50625656 | None:intergenic | 60.0% | |
| GCACATCCCTGCTCGAGAGA+AGG | + | chr8_4:50626053-50626072 | Msa1331180:intron | 60.0% | |
| GAGAGGAACAGGCAGCCAAG+TGG | + | chr8_4:50626550-50626569 | Msa1331180:CDS | 60.0% | |
| GGAACAGGCAGCCAAGTGGT+TGG | + | chr8_4:50626554-50626573 | Msa1331180:CDS | 60.0% | |
| GAACATTACGCAGGGCACGC+TGG | - | chr8_4:50626685-50626704 | None:intergenic | 60.0% | |
| GCCTGAGGCCCTAAGCTAAG+GGG | - | chr8_4:50628147-50628166 | None:intergenic | 60.0% | |
| CGCGGACCTTCTCTCGAGCA+GGG | - | chr8_4:50626062-50626081 | None:intergenic | 65.0% | |
| TCGCGGACCTTCTCTCGAGC+AGG | - | chr8_4:50626063-50626082 | None:intergenic | 65.0% | |
| GCACGCTGGACTTCCGACAC+AGG | - | chr8_4:50626671-50626690 | None:intergenic | 65.0% | |
| GCCCCTTAGCTTAGGGCCTC+AGG | + | chr8_4:50628143-50628162 | Msa1331180:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 50625047 | 50628308 | 50625047 | ID=Msa1331180;Name=Msa1331180 |
| chr8_4 | mRNA | 50625047 | 50628308 | 50625047 | ID=Msa1331180-mRNA-1;Parent=Msa1331180;Name=Msa1331180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=75|1|1|1|1|1|3|244|614 |
| chr8_4 | exon | 50625047 | 50625424 | 50625047 | ID=Msa1331180-mRNA-1:exon:14795;Parent=Msa1331180-mRNA-1 |
| chr8_4 | exon | 50626266 | 50627574 | 50626266 | ID=Msa1331180-mRNA-1:exon:14796;Parent=Msa1331180-mRNA-1 |
| chr8_4 | exon | 50627832 | 50628308 | 50627832 | ID=Msa1331180-mRNA-1:exon:14797;Parent=Msa1331180-mRNA-1 |
| chr8_4 | five_prime_UTR | 50625047 | 50625121 | 50625047 | ID=Msa1331180-mRNA-1:five_prime_utr;Parent=Msa1331180-mRNA-1 |
| chr8_4 | CDS | 50625122 | 50625424 | 50625122 | ID=Msa1331180-mRNA-1:cds;Parent=Msa1331180-mRNA-1 |
| chr8_4 | CDS | 50626266 | 50627574 | 50626266 | ID=Msa1331180-mRNA-1:cds;Parent=Msa1331180-mRNA-1 |
| chr8_4 | CDS | 50627832 | 50628064 | 50627832 | ID=Msa1331180-mRNA-1:cds;Parent=Msa1331180-mRNA-1 |
| chr8_4 | three_prime_UTR | 50628065 | 50628308 | 50628065 | ID=Msa1331180-mRNA-1:three_prime_utr;Parent=Msa1331180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
