Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332790 | sp|Q9SY66|FRS11_ARATH | 32.333 | 300 | 163 | 6 | 35 | 298 | 13 | 308 | 1.55e-43 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332790 | A0A445HD78 | 43.361 | 482 | 213 | 12 | 64 | 493 | 94 | 567 | 4.55e-109 | 345 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1332790 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332790 | MtrunA17_Chr5g0402481 | 95.556 | 90 | 4 | 0 | 395 | 484 | 1 | 90 | 4.48e-55 | 180 |
| Msa1332790 | MtrunA17_Chr2g0276841 | 36.014 | 286 | 140 | 6 | 64 | 318 | 70 | 343 | 2.22e-47 | 174 |
| Msa1332790 | MtrunA17_Chr2g0294841 | 36.042 | 283 | 142 | 5 | 39 | 286 | 17 | 295 | 2.69e-45 | 169 |
| Msa1332790 | MtrunA17_Chr5g0431001 | 37.652 | 247 | 118 | 3 | 64 | 276 | 61 | 305 | 7.47e-41 | 153 |
| Msa1332790 | MtrunA17_Chr1g0198761 | 34.426 | 244 | 124 | 3 | 67 | 276 | 50 | 291 | 1.74e-38 | 149 |
| Msa1332790 | MtrunA17_Chr2g0290391 | 32.157 | 255 | 134 | 4 | 57 | 274 | 44 | 296 | 4.61e-33 | 133 |
| Msa1332790 | MtrunA17_Chr3g0081281 | 44.086 | 93 | 52 | 0 | 180 | 272 | 1 | 93 | 1.42e-20 | 86.3 |
| Msa1332790 | MtrunA17_Chr5g0448761 | 28.571 | 252 | 134 | 6 | 62 | 276 | 58 | 300 | 1.63e-20 | 95.1 |
| Msa1332790 | MtrunA17_Chr8g0363841 | 30.645 | 248 | 127 | 8 | 65 | 277 | 18 | 255 | 2.19e-20 | 94.7 |
| Msa1332790 | MtrunA17_Chr2g0296781 | 28.755 | 233 | 131 | 6 | 70 | 276 | 3 | 226 | 5.34e-20 | 93.6 |
| Msa1332790 | MtrunA17_Chr2g0287651 | 27.461 | 193 | 133 | 4 | 86 | 276 | 124 | 311 | 3.83e-17 | 84.7 |
| Msa1332790 | MtrunA17_Chr5g0440451 | 25.514 | 243 | 149 | 5 | 63 | 276 | 42 | 281 | 2.42e-15 | 79.0 |
| Msa1332790 | MtrunA17_Chr3g0082121 | 24.013 | 304 | 166 | 10 | 3 | 276 | 1 | 269 | 1.82e-13 | 73.2 |
| Msa1332790 | MtrunA17_Chr1g0196541 | 27.311 | 238 | 133 | 8 | 70 | 277 | 3 | 230 | 2.45e-13 | 72.8 |
| Msa1332790 | MtrunA17_Chr1g0207551 | 26.141 | 241 | 139 | 7 | 62 | 273 | 32 | 262 | 2.59e-13 | 72.8 |
| Msa1332790 | MtrunA17_Chr6g0477261 | 34.783 | 115 | 73 | 2 | 163 | 276 | 2 | 115 | 2.91e-13 | 72.4 |
| Msa1332790 | MtrunA17_Chr1g0203051 | 24.211 | 190 | 137 | 4 | 86 | 274 | 128 | 311 | 1.33e-12 | 70.1 |
| Msa1332790 | MtrunA17_Chr1g0202341 | 26.122 | 245 | 142 | 6 | 62 | 276 | 49 | 284 | 1.89e-11 | 66.6 |
| Msa1332790 | MtrunA17_Chr7g0258861 | 24.868 | 189 | 135 | 3 | 86 | 273 | 59 | 241 | 2.57e-11 | 64.7 |
| Msa1332790 | MtrunA17_Chr2g0329031 | 25.328 | 229 | 133 | 6 | 70 | 273 | 20 | 235 | 7.89e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332790 | AT1G10240.2 | 32.333 | 300 | 163 | 6 | 35 | 298 | 13 | 308 | 1.57e-44 | 166 |
| Msa1332790 | AT1G10240.1 | 32.333 | 300 | 163 | 6 | 35 | 298 | 13 | 308 | 1.57e-44 | 166 |
| Msa1332790 | AT5G28530.3 | 31.621 | 253 | 134 | 4 | 59 | 274 | 50 | 300 | 1.44e-33 | 135 |
| Msa1332790 | AT5G28530.2 | 31.621 | 253 | 134 | 4 | 59 | 274 | 50 | 300 | 1.44e-33 | 135 |
| Msa1332790 | AT5G28530.1 | 31.621 | 253 | 134 | 4 | 59 | 274 | 50 | 300 | 1.52e-33 | 135 |
| Msa1332790 | AT5G28530.4 | 32.367 | 207 | 104 | 4 | 59 | 231 | 50 | 254 | 3.53e-26 | 112 |
| Msa1332790 | AT5G28530.5 | 32.367 | 207 | 104 | 4 | 59 | 231 | 50 | 254 | 3.62e-26 | 112 |
| Msa1332790 | AT4G38180.1 | 27.393 | 303 | 169 | 9 | 8 | 276 | 24 | 309 | 1.55e-22 | 102 |
| Msa1332790 | AT1G76320.2 | 29.437 | 231 | 122 | 8 | 70 | 273 | 3 | 219 | 1.98e-15 | 79.7 |
| Msa1332790 | AT1G76320.1 | 29.437 | 231 | 122 | 8 | 70 | 273 | 3 | 219 | 2.07e-15 | 79.7 |
| Msa1332790 | AT1G76320.4 | 29.437 | 231 | 122 | 8 | 70 | 273 | 3 | 219 | 2.07e-15 | 79.7 |
| Msa1332790 | AT1G76320.3 | 29.437 | 231 | 122 | 8 | 70 | 273 | 3 | 219 | 2.91e-15 | 79.0 |
| Msa1332790 | AT4G15090.1 | 25.820 | 244 | 146 | 6 | 62 | 276 | 49 | 286 | 3.29e-13 | 72.8 |
| Msa1332790 | AT4G15090.5 | 25.820 | 244 | 146 | 6 | 62 | 276 | 49 | 286 | 3.29e-13 | 72.8 |
| Msa1332790 | AT4G15090.3 | 25.820 | 244 | 146 | 6 | 62 | 276 | 49 | 286 | 3.29e-13 | 72.8 |
| Msa1332790 | AT4G15090.2 | 25.820 | 244 | 146 | 6 | 62 | 276 | 49 | 286 | 3.29e-13 | 72.8 |
| Msa1332790 | AT4G15090.4 | 25.820 | 244 | 146 | 6 | 62 | 276 | 49 | 286 | 3.29e-13 | 72.8 |
Find 72 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCACATGGTTCATTATT+TGG | 0.125786 | 8_4:-52754923 | None:intergenic |
| TGCATGAACTTAAGCAAAAT+TGG | 0.172211 | 8_4:+52755903 | Msa1332790:CDS |
| TATCTTCGTGGACATTTCTT+TGG | 0.188030 | 8_4:+52755935 | Msa1332790:CDS |
| GGAAGATCAGAGAGTATAAA+TGG | 0.208991 | 8_4:+52755974 | Msa1332790:CDS |
| TCAATAACTTGCCATTCTTT+TGG | 0.220230 | 8_4:-52755284 | None:intergenic |
| CACAAAAGCATAAAGTCTTA+TGG | 0.233735 | 8_4:+52756615 | Msa1332790:CDS |
| CTATTTCGTTGTTCTTTAGA+TGG | 0.256140 | 8_4:-52755194 | None:intergenic |
| AGAAAACATTGTCCAATAAA+AGG | 0.261110 | 8_4:-52755016 | None:intergenic |
| TAAGATTCACCAAGGTAAAT+TGG | 0.262024 | 8_4:+52755523 | Msa1332790:CDS |
| TAAGACTTTAAATATAAAAT+AGG | 0.262718 | 8_4:-52757085 | None:intergenic |
| TTCTCCACATTCTCAATATA+TGG | 0.265541 | 8_4:-52756839 | None:intergenic |
| TATCAACAGTGAATGCAAAT+TGG | 0.310367 | 8_4:-52755607 | None:intergenic |
| ATTATAAGAATTCACCTTGT+AGG | 0.317528 | 8_4:-52755720 | None:intergenic |
| AAAGACTAGAGAATATATTT+TGG | 0.320756 | 8_4:+52755636 | Msa1332790:CDS |
| GATTGAGAACCCACTCCTTT+TGG | 0.334536 | 8_4:-52755077 | None:intergenic |
| GAAGCAAACAAACACATAAT+AGG | 0.338772 | 8_4:+52755878 | Msa1332790:CDS |
| ATCTTCGTGGACATTTCTTT+GGG | 0.345309 | 8_4:+52755936 | Msa1332790:CDS |
| TTTGAGTTGTACCAAGAGTA+TGG | 0.355497 | 8_4:+52755674 | Msa1332790:CDS |
| TGAATATCTTTCCGAAGAAA+TGG | 0.356103 | 8_4:-52755488 | None:intergenic |
| GCAAGGAAGCGCACTTGATC+TGG | 0.359458 | 8_4:-52755341 | None:intergenic |
| ACAAAAGCATAAAGTCTTAT+GGG | 0.378373 | 8_4:+52756616 | Msa1332790:CDS |
| CTAAGTGAGGAAGAAGCTTT+CGG | 0.384552 | 8_4:+52755037 | Msa1332790:CDS |
| CAAGCAAATAATGCGTGTTA+TGG | 0.401498 | 8_4:+52755433 | Msa1332790:CDS |
| CTTAGTGAAGTAGGACATAA+AGG | 0.408462 | 8_4:+52756809 | Msa1332790:CDS |
| ATGGTGATCTTCCATTTCTT+CGG | 0.414681 | 8_4:+52755477 | Msa1332790:CDS |
| GCATGAACTTAAGCAAAATT+GGG | 0.431893 | 8_4:+52755904 | Msa1332790:CDS |
| GAGAATTATGCCAAAAGGAG+TGG | 0.432756 | 8_4:+52755067 | Msa1332790:CDS |
| TTTGGGAGTATGACAACAAC+AGG | 0.434388 | 8_4:+52755953 | Msa1332790:CDS |
| TTGCCCTCTCAAACTCCTCC+TGG | 0.438199 | 8_4:-52756526 | None:intergenic |
| TTATGGGATGGTGATGTTGT+TGG | 0.458032 | 8_4:+52756632 | Msa1332790:CDS |
| AACGAAATAGACAATCTTCA+AGG | 0.467235 | 8_4:+52755207 | Msa1332790:CDS |
| TGGGTACCGGCTTATCTTCG+TGG | 0.469464 | 8_4:+52755923 | Msa1332790:CDS |
| GGAACATAACCTTCTTTGTC+CGG | 0.471805 | 8_4:-52757007 | None:intergenic |
| TTTATGAGAATTATGCCAAA+AGG | 0.493635 | 8_4:+52755062 | Msa1332790:CDS |
| CCCAAAACAAAACGATCAAA+AGG | 0.499343 | 8_4:+52756911 | Msa1332790:CDS |
| GAGGTAGTAAATCATGATTA+TGG | 0.500482 | 8_4:-52755319 | None:intergenic |
| AATGTCATGCTTAGTGAAGT+AGG | 0.500833 | 8_4:+52756800 | Msa1332790:CDS |
| CAACGACCTCTCCATACTCT+TGG | 0.501798 | 8_4:-52755685 | None:intergenic |
| TGATTTGAGCAACGACGAGC+AGG | 0.506619 | 8_4:+52754964 | Msa1332790:CDS |
| TCACAATGTTACAACTTGTC+CGG | 0.507013 | 8_4:+52756988 | Msa1332790:CDS |
| CCTCCGCGTTCAATAACAAA+AGG | 0.532998 | 8_4:+52756884 | Msa1332790:CDS |
| TCAAGGTGTGAATGCAAAGC+GGG | 0.533662 | 8_4:+52755224 | Msa1332790:CDS |
| ACAACTTGTCCGGACAAAGA+AGG | 0.546455 | 8_4:+52756998 | Msa1332790:CDS |
| TGCATTTGATACTACCTACA+AGG | 0.547093 | 8_4:+52755706 | Msa1332790:CDS |
| GAAGATCAGAGAGTATAAAT+GGG | 0.554653 | 8_4:+52755975 | Msa1332790:CDS |
| ATTTACTGTGAAATATTACA+AGG | 0.556334 | 8_4:+52756583 | Msa1332790:CDS |
| ACTTAAGCAAAATTGGGTAC+CGG | 0.561708 | 8_4:+52755910 | Msa1332790:CDS |
| CATCTTCCTCAGAAATGTTG+TGG | 0.561811 | 8_4:-52755370 | None:intergenic |
| TAGTAAATCATGATTATGGT+TGG | 0.565674 | 8_4:-52755315 | None:intergenic |
| AAATGTTGTGGTAAGATGCA+AGG | 0.573935 | 8_4:-52755358 | None:intergenic |
| CATCACCATCCAATTTACCT+TGG | 0.575070 | 8_4:-52755532 | None:intergenic |
| GGGTCCATATATTGAGAATG+TGG | 0.577307 | 8_4:+52756835 | Msa1332790:CDS |
| CTCAATCAATTGTTCTCATG+TGG | 0.580264 | 8_4:+52754635 | Msa1332790:CDS |
| AAATGTCCACGAAGATAAGC+CGG | 0.581287 | 8_4:-52755929 | None:intergenic |
| GAAGTAGGACATAAAGGCAA+GGG | 0.591654 | 8_4:+52756815 | Msa1332790:CDS |
| ATTCACCAAGGTAAATTGGA+TGG | 0.593411 | 8_4:+52755527 | Msa1332790:CDS |
| AGTTCCAGGAGGAGTTTGAG+AGG | 0.593892 | 8_4:+52756522 | Msa1332790:CDS |
| AGAATTATGCCAAAAGGAGT+GGG | 0.597719 | 8_4:+52755068 | Msa1332790:CDS |
| AAGCATAAAGTCTTATGGGA+TGG | 0.601527 | 8_4:+52756620 | Msa1332790:CDS |
| TTCAAGGTGTGAATGCAAAG+CGG | 0.603515 | 8_4:+52755223 | Msa1332790:CDS |
| GTTCCAGGAGGAGTTTGAGA+GGG | 0.605391 | 8_4:+52756523 | Msa1332790:CDS |
| TGAAGTAGGACATAAAGGCA+AGG | 0.605684 | 8_4:+52756814 | Msa1332790:CDS |
| AAGGTGGAATCGAATTGTCA+AGG | 0.613048 | 8_4:+52756930 | Msa1332790:CDS |
| ATCTTACCACAACATTTCTG+AGG | 0.619979 | 8_4:+52755364 | Msa1332790:CDS |
| TACAACTCAAAGCAATGAGG+TGG | 0.628223 | 8_4:-52755662 | None:intergenic |
| AAAACAAAACGATCAAAAGG+TGG | 0.630073 | 8_4:+52756914 | Msa1332790:CDS |
| AGGAAGCGCACTTGATCTGG+AGG | 0.631105 | 8_4:-52755338 | None:intergenic |
| TTCTTCAATAAGATTCACCA+AGG | 0.638648 | 8_4:+52755515 | Msa1332790:CDS |
| TGGTACAACTCAAAGCAATG+AGG | 0.685743 | 8_4:-52755665 | None:intergenic |
| TGCGTTTAAGAAGTTCCAGG+AGG | 0.692916 | 8_4:+52756511 | Msa1332790:intron |
| GTTGTACCAAGAGTATGGAG+AGG | 0.729685 | 8_4:+52755679 | Msa1332790:CDS |
| AGTTGAAATAAACTTGAACG+AGG | 0.740415 | 8_4:-52756019 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGACTTTAAATATAAAAT+AGG | - | chr8_4:52757088-52757107 | None:intergenic | 10.0% |
| !!! | AATTCAACAATAATATTTTG+TGG | + | chr8_4:52754798-52754817 | Msa1332790:intron | 15.0% |
| !! | TAATATGAATTTATTTGTGT+AGG | + | chr8_4:52754864-52754883 | Msa1332790:intron | 15.0% |
| !!! | TCGATTTCTTTAAAAAAAAA+TGG | + | chr8_4:52755108-52755127 | Msa1332790:intron | 15.0% |
| !!! | CGATTTCTTTAAAAAAAAAT+GGG | + | chr8_4:52755109-52755128 | Msa1332790:intron | 15.0% |
| !! | AATGATACTTTAATAACTAA+TGG | + | chr8_4:52756330-52756349 | Msa1332790:intron | 15.0% |
| !! | TTGAGAACAATATAAGAAAA+AGG | - | chr8_4:52754710-52754729 | None:intergenic | 20.0% |
| !! | AATTCGTATATAAGGAATTA+GGG | - | chr8_4:52754782-52754801 | None:intergenic | 20.0% |
| !! | TATTGTTGAATTCGTATATA+AGG | - | chr8_4:52754790-52754809 | None:intergenic | 20.0% |
| !!! | AATTGTTTTGAACCTTTTAT+TGG | + | chr8_4:52755004-52755023 | Msa1332790:CDS | 20.0% |
| !!! | AAAGACTAGAGAATATATTT+TGG | + | chr8_4:52755636-52755655 | Msa1332790:CDS | 20.0% |
| !!! | AATTCTTATAATATGCCTTT+TGG | + | chr8_4:52755731-52755750 | Msa1332790:intron | 20.0% |
| !! | ATTTACTGTGAAATATTACA+AGG | + | chr8_4:52756583-52756602 | Msa1332790:CDS | 20.0% |
| ! | ATTCGTATATAAGGAATTAG+GGG | - | chr8_4:52754781-52754800 | None:intergenic | 25.0% |
| ! | GAATTCGTATATAAGGAATT+AGG | - | chr8_4:52754783-52754802 | None:intergenic | 25.0% |
| ! | TGAATTTATTTGTGTAGGTT+AGG | + | chr8_4:52754869-52754888 | Msa1332790:intron | 25.0% |
| ! | TTATCACATGGTTCATTATT+TGG | - | chr8_4:52754926-52754945 | None:intergenic | 25.0% |
| !! | TCATTTTCTGAATTATCACA+TGG | - | chr8_4:52754938-52754957 | None:intergenic | 25.0% |
| ! | AGAAAACATTGTCCAATAAA+AGG | - | chr8_4:52755019-52755038 | None:intergenic | 25.0% |
| ! | TTTATGAGAATTATGCCAAA+AGG | + | chr8_4:52755062-52755081 | Msa1332790:CDS | 25.0% |
| ! | AAAAAAATGGGATGATACAT+AGG | + | chr8_4:52755121-52755140 | Msa1332790:intron | 25.0% |
| !!! | TGGATCATGATATTTTTTTC+TGG | - | chr8_4:52755177-52755196 | None:intergenic | 25.0% |
| !!! | TTCTTTTGGAAAAATCTCAA+AGG | - | chr8_4:52755273-52755292 | None:intergenic | 25.0% |
| !! | TTGAGATTTTTCCAAAAGAA+TGG | + | chr8_4:52755273-52755292 | Msa1332790:CDS | 25.0% |
| ! | TAGTAAATCATGATTATGGT+TGG | - | chr8_4:52755318-52755337 | None:intergenic | 25.0% |
| ! | CTTGAGAAAAATGTTAAGTA+TGG | + | chr8_4:52755458-52755477 | Msa1332790:CDS | 25.0% |
| ! | ATTATAAGAATTCACCTTGT+AGG | - | chr8_4:52755723-52755742 | None:intergenic | 25.0% |
| ! | CAAAACATAGTATAAACACA+GGG | - | chr8_4:52756132-52756151 | None:intergenic | 25.0% |
| ! | TTTGAACTTAATCCTCTATA+GGG | - | chr8_4:52756475-52756494 | None:intergenic | 25.0% |
| !! | ACAAAAGCATAAAGTCTTAT+GGG | + | chr8_4:52756616-52756635 | Msa1332790:CDS | 25.0% |
| !!! | TTGTAAGCATTTTGAGTTTT+GGG | + | chr8_4:52756661-52756680 | Msa1332790:CDS | 25.0% |
| !!! | ATTGCTTTTAAATTCCAACA+AGG | + | chr8_4:52756726-52756745 | Msa1332790:intron | 25.0% |
| TTTAAAGAAATCGACCTTTC+CGG | - | chr8_4:52755102-52755121 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTGGAAATCCTTCT+CGG | - | chr8_4:52755164-52755183 | None:intergenic | 30.0% |
| CTATTTCGTTGTTCTTTAGA+TGG | - | chr8_4:52755197-52755216 | None:intergenic | 30.0% | |
| AACGAAATAGACAATCTTCA+AGG | + | chr8_4:52755207-52755226 | Msa1332790:CDS | 30.0% | |
| !! | TCAATAACTTGCCATTCTTT+TGG | - | chr8_4:52755287-52755306 | None:intergenic | 30.0% |
| GAGGTAGTAAATCATGATTA+TGG | - | chr8_4:52755322-52755341 | None:intergenic | 30.0% | |
| TGAATATCTTTCCGAAGAAA+TGG | - | chr8_4:52755491-52755510 | None:intergenic | 30.0% | |
| TTCTTCAATAAGATTCACCA+AGG | + | chr8_4:52755515-52755534 | Msa1332790:CDS | 30.0% | |
| TAAGATTCACCAAGGTAAAT+TGG | + | chr8_4:52755523-52755542 | Msa1332790:CDS | 30.0% | |
| TATCAACAGTGAATGCAAAT+TGG | - | chr8_4:52755610-52755629 | None:intergenic | 30.0% | |
| ATTCCAACAAAAATGCCAAA+AGG | - | chr8_4:52755749-52755768 | None:intergenic | 30.0% | |
| GAAGCAAACAAACACATAAT+AGG | + | chr8_4:52755878-52755897 | Msa1332790:CDS | 30.0% | |
| TGCATGAACTTAAGCAAAAT+TGG | + | chr8_4:52755903-52755922 | Msa1332790:CDS | 30.0% | |
| GCATGAACTTAAGCAAAATT+GGG | + | chr8_4:52755904-52755923 | Msa1332790:CDS | 30.0% | |
| ! | GAAGATCAGAGAGTATAAAT+GGG | + | chr8_4:52755975-52755994 | Msa1332790:CDS | 30.0% |
| AGTTGAAATAAACTTGAACG+AGG | - | chr8_4:52756022-52756041 | None:intergenic | 30.0% | |
| CCAAAACATAGTATAAACAC+AGG | - | chr8_4:52756133-52756152 | None:intergenic | 30.0% | |
| ! | CCTGTGTTTATACTATGTTT+TGG | + | chr8_4:52756130-52756149 | Msa1332790:intron | 30.0% |
| !! | GTGTTTATACTATGTTTTGG+AGG | + | chr8_4:52756133-52756152 | Msa1332790:intron | 30.0% |
| !!! | TATGTTTTGGAGGATAGTTT+TGG | + | chr8_4:52756143-52756162 | Msa1332790:intron | 30.0% |
| TTGAACTTAATCCTCTATAG+GGG | - | chr8_4:52756474-52756493 | None:intergenic | 30.0% | |
| CTTTGAACTTAATCCTCTAT+AGG | - | chr8_4:52756476-52756495 | None:intergenic | 30.0% | |
| ! | CACAAAAGCATAAAGTCTTA+TGG | + | chr8_4:52756615-52756634 | Msa1332790:CDS | 30.0% |
| !!! | GTTGTAAGCATTTTGAGTTT+TGG | + | chr8_4:52756660-52756679 | Msa1332790:CDS | 30.0% |
| !!! | TGTAAGCATTTTGAGTTTTG+GGG | + | chr8_4:52756662-52756681 | Msa1332790:CDS | 30.0% |
| TTCTCCACATTCTCAATATA+TGG | - | chr8_4:52756842-52756861 | None:intergenic | 30.0% | |
| !!! | CCTTTTGATCGTTTTGTTTT+GGG | - | chr8_4:52756914-52756933 | None:intergenic | 30.0% |
| !!! | ACCTTTTGATCGTTTTGTTT+TGG | - | chr8_4:52756915-52756934 | None:intergenic | 30.0% |
| AAAACAAAACGATCAAAAGG+TGG | + | chr8_4:52756914-52756933 | Msa1332790:CDS | 30.0% | |
| ! | TTCATTCTTCCTCTTTTTGA+TGG | - | chr8_4:52757041-52757060 | None:intergenic | 30.0% |
| CTCAATCAATTGTTCTCATG+TGG | + | chr8_4:52754635-52754654 | Msa1332790:CDS | 35.0% | |
| ! | TGGACAATGTTTTCTAAGTG+AGG | + | chr8_4:52755024-52755043 | Msa1332790:CDS | 35.0% |
| AGAATTATGCCAAAAGGAGT+GGG | + | chr8_4:52755068-52755087 | Msa1332790:CDS | 35.0% | |
| AAAATGGGATGATACATAGG+AGG | + | chr8_4:52755124-52755143 | Msa1332790:intron | 35.0% | |
| AAATGGGATGATACATAGGA+GGG | + | chr8_4:52755125-52755144 | Msa1332790:intron | 35.0% | |
| AAATGTTGTGGTAAGATGCA+AGG | - | chr8_4:52755361-52755380 | None:intergenic | 35.0% | |
| ATCTTACCACAACATTTCTG+AGG | + | chr8_4:52755364-52755383 | Msa1332790:CDS | 35.0% | |
| CAAGCAAATAATGCGTGTTA+TGG | + | chr8_4:52755433-52755452 | Msa1332790:CDS | 35.0% | |
| ATGGTGATCTTCCATTTCTT+CGG | + | chr8_4:52755477-52755496 | Msa1332790:CDS | 35.0% | |
| ATTCACCAAGGTAAATTGGA+TGG | + | chr8_4:52755527-52755546 | Msa1332790:CDS | 35.0% | |
| ! | ACAATTTTGTAAGTGTGCCA+AGG | + | chr8_4:52755568-52755587 | Msa1332790:CDS | 35.0% |
| !! | TTTGAGTTGTACCAAGAGTA+TGG | + | chr8_4:52755674-52755693 | Msa1332790:CDS | 35.0% |
| TGCATTTGATACTACCTACA+AGG | + | chr8_4:52755706-52755725 | Msa1332790:CDS | 35.0% | |
| ! | ATGCCTTTTGGCATTTTTGT+TGG | + | chr8_4:52755743-52755762 | Msa1332790:intron | 35.0% |
| TTTGTTGGAATCGACAATCA+CGG | + | chr8_4:52755758-52755777 | Msa1332790:intron | 35.0% | |
| AAACTGCATCTACATTTCGA+TGG | + | chr8_4:52755819-52755838 | Msa1332790:intron | 35.0% | |
| GTTTGCTTCTAGATTGTACT+TGG | - | chr8_4:52755867-52755886 | None:intergenic | 35.0% | |
| ACTTAAGCAAAATTGGGTAC+CGG | + | chr8_4:52755910-52755929 | Msa1332790:CDS | 35.0% | |
| TATCTTCGTGGACATTTCTT+TGG | + | chr8_4:52755935-52755954 | Msa1332790:CDS | 35.0% | |
| ATCTTCGTGGACATTTCTTT+GGG | + | chr8_4:52755936-52755955 | Msa1332790:CDS | 35.0% | |
| ! | GGAAGATCAGAGAGTATAAA+TGG | + | chr8_4:52755974-52755993 | Msa1332790:CDS | 35.0% |
| CCAAGGTGAAAACATTAACA+AGG | - | chr8_4:52756087-52756106 | None:intergenic | 35.0% | |
| ! | CCTTGTTAATGTTTTCACCT+TGG | + | chr8_4:52756084-52756103 | Msa1332790:intron | 35.0% |
| TTTACTCTACTCAAACACCA+AGG | - | chr8_4:52756104-52756123 | None:intergenic | 35.0% | |
| AACATAGTATAAACACAGGG+AGG | - | chr8_4:52756129-52756148 | None:intergenic | 35.0% | |
| ! | TATTTTGCTCTTCACAAGTG+TGG | + | chr8_4:52756232-52756251 | Msa1332790:intron | 35.0% |
| ACACCATGTTGGATACATAT+AGG | + | chr8_4:52756426-52756445 | Msa1332790:intron | 35.0% | |
| CACCATGTTGGATACATATA+GGG | + | chr8_4:52756427-52756446 | Msa1332790:intron | 35.0% | |
| ACCATGTTGGATACATATAG+GGG | + | chr8_4:52756428-52756447 | Msa1332790:intron | 35.0% | |
| ! | TTTTGCGTTTAAGAAGTTCC+AGG | + | chr8_4:52756508-52756527 | Msa1332790:intron | 35.0% |
| ! | AAGCATAAAGTCTTATGGGA+TGG | + | chr8_4:52756620-52756639 | Msa1332790:CDS | 35.0% |
| AATGTCATGCTTAGTGAAGT+AGG | + | chr8_4:52756800-52756819 | Msa1332790:CDS | 35.0% | |
| CTTAGTGAAGTAGGACATAA+AGG | + | chr8_4:52756809-52756828 | Msa1332790:CDS | 35.0% | |
| CCCAAAACAAAACGATCAAA+AGG | + | chr8_4:52756911-52756930 | Msa1332790:CDS | 35.0% | |
| ! | TGTAGCTTTTGCAATAGAAG+TGG | + | chr8_4:52756965-52756984 | Msa1332790:CDS | 35.0% |
| TCACAATGTTACAACTTGTC+CGG | + | chr8_4:52756988-52757007 | Msa1332790:CDS | 35.0% | |
| !!! | CTCTTTTTGATGGTTGATGA+CGG | - | chr8_4:52757031-52757050 | None:intergenic | 35.0% |
| CTAAGTGAGGAAGAAGCTTT+CGG | + | chr8_4:52755037-52755056 | Msa1332790:CDS | 40.0% | |
| GAGAATTATGCCAAAAGGAG+TGG | + | chr8_4:52755067-52755086 | Msa1332790:CDS | 40.0% | |
| !!! | GATTTTTTCTGTCACCGAGA+AGG | + | chr8_4:52755147-52755166 | Msa1332790:intron | 40.0% |
| TTCAAGGTGTGAATGCAAAG+CGG | + | chr8_4:52755223-52755242 | Msa1332790:CDS | 40.0% | |
| CATCTTCCTCAGAAATGTTG+TGG | - | chr8_4:52755373-52755392 | None:intergenic | 40.0% | |
| CATCACCATCCAATTTACCT+TGG | - | chr8_4:52755535-52755554 | None:intergenic | 40.0% | |
| ! | GAAGCAAGAGTTTTCATCCT+TGG | - | chr8_4:52755588-52755607 | None:intergenic | 40.0% |
| TACAACTCAAAGCAATGAGG+TGG | - | chr8_4:52755665-52755684 | None:intergenic | 40.0% | |
| TGGTACAACTCAAAGCAATG+AGG | - | chr8_4:52755668-52755687 | None:intergenic | 40.0% | |
| AAATGTCCACGAAGATAAGC+CGG | - | chr8_4:52755932-52755951 | None:intergenic | 40.0% | |
| ! | TTTGGGAGTATGACAACAAC+AGG | + | chr8_4:52755953-52755972 | Msa1332790:CDS | 40.0% |
| !!! | GGAGGATAGTTTTGGACAAT+AGG | + | chr8_4:52756151-52756170 | Msa1332790:intron | 40.0% |
| ACGTGTAGTATGCATCTGTT+AGG | + | chr8_4:52756177-52756196 | Msa1332790:intron | 40.0% | |
| AGTATGCATCTGTTAGGAGT+TGG | + | chr8_4:52756183-52756202 | Msa1332790:intron | 40.0% | |
| GTGTGGTTTATGCATCTGTT+AGG | + | chr8_4:52756249-52756268 | Msa1332790:intron | 40.0% | |
| !! | TTAGGTTGATCTTGCCATTG+AGG | + | chr8_4:52756379-52756398 | Msa1332790:intron | 40.0% |
| ATCTTGCCATTGAGGACATT+GGG | + | chr8_4:52756387-52756406 | Msa1332790:intron | 40.0% | |
| ACAACTACATCACACCATGT+TGG | + | chr8_4:52756415-52756434 | Msa1332790:intron | 40.0% | |
| TCCCCTATATGTATCCAACA+TGG | - | chr8_4:52756432-52756451 | None:intergenic | 40.0% | |
| TCGATCATTATCCCCTATAG+AGG | + | chr8_4:52756460-52756479 | Msa1332790:intron | 40.0% | |
| ! | TTATGGGATGGTGATGTTGT+TGG | + | chr8_4:52756632-52756651 | Msa1332790:CDS | 40.0% |
| AGCATGACATTTACTTCGAC+TGG | - | chr8_4:52756791-52756810 | None:intergenic | 40.0% | |
| TGAAGTAGGACATAAAGGCA+AGG | + | chr8_4:52756814-52756833 | Msa1332790:CDS | 40.0% | |
| GAAGTAGGACATAAAGGCAA+GGG | + | chr8_4:52756815-52756834 | Msa1332790:CDS | 40.0% | |
| GGGTCCATATATTGAGAATG+TGG | + | chr8_4:52756835-52756854 | Msa1332790:CDS | 40.0% | |
| !!! | CGACCTTTTGTTATTGAACG+CGG | - | chr8_4:52756890-52756909 | None:intergenic | 40.0% |
| AAGGTGGAATCGAATTGTCA+AGG | + | chr8_4:52756930-52756949 | Msa1332790:CDS | 40.0% | |
| GGAACATAACCTTCTTTGTC+CGG | - | chr8_4:52757010-52757029 | None:intergenic | 40.0% | |
| CGTCATCAACCATCAAAAAG+AGG | + | chr8_4:52757029-52757048 | Msa1332790:CDS | 40.0% | |
| ! | GATTGAGAACCCACTCCTTT+TGG | - | chr8_4:52755080-52755099 | None:intergenic | 45.0% |
| ! | AAAGGAGTGGGTTCTCAATC+CGG | + | chr8_4:52755080-52755099 | Msa1332790:intron | 45.0% |
| TCAAGGTGTGAATGCAAAGC+GGG | + | chr8_4:52755224-52755243 | Msa1332790:CDS | 45.0% | |
| ! | GTTGTACCAAGAGTATGGAG+AGG | + | chr8_4:52755679-52755698 | Msa1332790:CDS | 45.0% |
| TTGGAATCGACAATCACGGA+AGG | + | chr8_4:52755762-52755781 | Msa1332790:intron | 45.0% | |
| CACGGAAGGACACTATTGTT+TGG | + | chr8_4:52755776-52755795 | Msa1332790:intron | 45.0% | |
| GATCTTGCCATTGAGGACAT+TGG | + | chr8_4:52756386-52756405 | Msa1332790:intron | 45.0% | |
| TTGTTGCCCAATGTCCTCAA+TGG | - | chr8_4:52756396-52756415 | None:intergenic | 45.0% | |
| TGCGTTTAAGAAGTTCCAGG+AGG | + | chr8_4:52756511-52756530 | Msa1332790:intron | 45.0% | |
| CGTAATGGCAGATACCTTGT+TGG | - | chr8_4:52756743-52756762 | None:intergenic | 45.0% | |
| ! | CAAGGTATCTGCCATTACGT+TGG | + | chr8_4:52756744-52756763 | Msa1332790:intron | 45.0% |
| TCATCACGACACCAACGTAA+TGG | - | chr8_4:52756758-52756777 | None:intergenic | 45.0% | |
| !!! | CCTTTTGTTATTGAACGCGG+AGG | - | chr8_4:52756887-52756906 | None:intergenic | 45.0% |
| CCTCCGCGTTCAATAACAAA+AGG | + | chr8_4:52756884-52756903 | Msa1332790:CDS | 45.0% | |
| ACAACTTGTCCGGACAAAGA+AGG | + | chr8_4:52756998-52757017 | Msa1332790:CDS | 45.0% | |
| !!! | ATTTTTTTATCTAATATTTT+AGG | + | chr8_4:52756361-52756380 | Msa1332790:intron | 5.0% |
| TGATTTGAGCAACGACGAGC+AGG | + | chr8_4:52754964-52754983 | Msa1332790:CDS | 50.0% | |
| ! | AGTGGGTTCTCAATCCGGAA+AGG | + | chr8_4:52755085-52755104 | Msa1332790:intron | 50.0% |
| CAACGACCTCTCCATACTCT+TGG | - | chr8_4:52755688-52755707 | None:intergenic | 50.0% | |
| AGTTCCAGGAGGAGTTTGAG+AGG | + | chr8_4:52756522-52756541 | Msa1332790:CDS | 50.0% | |
| GTTCCAGGAGGAGTTTGAGA+GGG | + | chr8_4:52756523-52756542 | Msa1332790:CDS | 50.0% | |
| ! | AGGAAGCGCACTTGATCTGG+AGG | - | chr8_4:52755341-52755360 | None:intergenic | 55.0% |
| ! | GCAAGGAAGCGCACTTGATC+TGG | - | chr8_4:52755344-52755363 | None:intergenic | 55.0% |
| !! | TGGGTACCGGCTTATCTTCG+TGG | + | chr8_4:52755923-52755942 | Msa1332790:CDS | 55.0% |
| TTGCCCTCTCAAACTCCTCC+TGG | - | chr8_4:52756529-52756548 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 52754612 | 52757108 | 52754612 | ID=Msa1332790;Name=Msa1332790 |
| chr8_4 | mRNA | 52754612 | 52757108 | 52754612 | ID=Msa1332790-mRNA-1;Parent=Msa1332790;Name=Msa1332790-mRNA-1;_AED=0.14;_eAED=0.19;_QI=0|0|0|1|1|1|6|0|494 |
| chr8_4 | exon | 52754612 | 52754670 | 52754612 | ID=Msa1332790-mRNA-1:exon:15914;Parent=Msa1332790-mRNA-1 |
| chr8_4 | exon | 52754886 | 52755089 | 52754886 | ID=Msa1332790-mRNA-1:exon:15915;Parent=Msa1332790-mRNA-1 |
| chr8_4 | exon | 52755169 | 52755727 | 52755169 | ID=Msa1332790-mRNA-1:exon:15916;Parent=Msa1332790-mRNA-1 |
| chr8_4 | exon | 52755869 | 52756051 | 52755869 | ID=Msa1332790-mRNA-1:exon:15917;Parent=Msa1332790-mRNA-1 |
| chr8_4 | exon | 52756521 | 52756683 | 52756521 | ID=Msa1332790-mRNA-1:exon:15918;Parent=Msa1332790-mRNA-1 |
| chr8_4 | exon | 52756792 | 52757108 | 52756792 | ID=Msa1332790-mRNA-1:exon:15919;Parent=Msa1332790-mRNA-1 |
| chr8_4 | CDS | 52754612 | 52754670 | 52754612 | ID=Msa1332790-mRNA-1:cds;Parent=Msa1332790-mRNA-1 |
| chr8_4 | CDS | 52754886 | 52755089 | 52754886 | ID=Msa1332790-mRNA-1:cds;Parent=Msa1332790-mRNA-1 |
| chr8_4 | CDS | 52755169 | 52755727 | 52755169 | ID=Msa1332790-mRNA-1:cds;Parent=Msa1332790-mRNA-1 |
| chr8_4 | CDS | 52755869 | 52756051 | 52755869 | ID=Msa1332790-mRNA-1:cds;Parent=Msa1332790-mRNA-1 |
| chr8_4 | CDS | 52756521 | 52756683 | 52756521 | ID=Msa1332790-mRNA-1:cds;Parent=Msa1332790-mRNA-1 |
| chr8_4 | CDS | 52756792 | 52757108 | 52756792 | ID=Msa1332790-mRNA-1:cds;Parent=Msa1332790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
