AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1333230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1333230 MtrunA17_Chr4g0069301 82.432 296 20 3 86 351 153 446 1.50e-169 479
Msa1333230 MtrunA17_Chr2g0302431 64.310 297 67 4 86 348 147 438 1.71e-125 368
Msa1333230 MtrunA17_Chr5g0441011 45.968 248 115 2 95 327 149 392 6.69e-70 225
Msa1333230 MtrunA17_Chr2g0304111 46.000 250 111 6 96 325 160 405 6.58e-68 220
Msa1333230 MtrunA17_Chr4g0063881 37.324 284 134 6 95 340 147 424 8.13e-63 206
Msa1333230 MtrunA17_Chr5g0428031 39.085 284 133 6 95 344 145 422 2.60e-60 200
Msa1333230 MtrunA17_Chr2g0284011 43.981 216 99 2 95 288 147 362 3.41e-59 197
Msa1333230 MtrunA17_Chr3g0107051 45.960 198 98 2 95 286 156 350 4.52e-59 197
Msa1333230 MtrunA17_Chr8g0346081 41.296 247 124 5 96 327 154 394 5.26e-58 194
Msa1333230 MtrunA17_Chr4g0013131 42.986 221 110 2 95 299 147 367 2.59e-57 192
Msa1333230 MtrunA17_Chr7g0244561 47.980 198 97 3 95 292 153 344 3.03e-57 191
Msa1333230 MtrunA17_Chr7g0244521 41.850 227 109 3 95 299 147 372 3.30e-57 192
Msa1333230 MtrunA17_Chr8g0346071 40.244 246 127 5 96 327 154 393 3.69e-57 191
Msa1333230 MtrunA17_Chr5g0432471 36.000 250 119 2 95 304 147 395 6.09e-55 186
Msa1333230 MtrunA17_Chr3g0107011 38.976 254 130 4 95 327 149 398 9.48e-55 186
Msa1333230 MtrunA17_Chr5g0432491 49.123 171 82 2 95 260 159 329 1.80e-54 184
Msa1333230 MtrunA17_Chr1g0150321 43.842 203 107 3 95 292 148 348 1.40e-51 176
Msa1333230 MtrunA17_Chr1g0188031 41.509 212 114 3 95 297 158 368 3.91e-51 176
Msa1333230 MtrunA17_Chr2g0284031 33.000 300 141 6 95 341 166 458 6.04e-51 177
Msa1333230 MtrunA17_Chr1g0166101 43.961 207 107 4 95 297 161 362 2.27e-49 171
Msa1333230 MtrunA17_Chr8g0379091 34.409 279 130 7 95 327 161 432 6.01e-48 169
Msa1333230 MtrunA17_Chr3g0114511 35.496 262 150 5 96 339 166 426 4.89e-44 157
Msa1333230 MtrunA17_Chr4g0001331 33.333 285 148 8 95 341 155 435 2.20e-43 155
Msa1333230 MtrunA17_Chr2g0333821 33.591 259 140 6 95 327 149 401 1.57e-42 153
Msa1333230 MtrunA17_Chr4g0069291 84.337 83 9 2 1 79 1 83 1.87e-38 144
Msa1333230 MtrunA17_Chr1g0205421 33.668 199 110 3 96 272 148 346 7.90e-33 127
Msa1333230 MtrunA17_Chr4g0074111 33.840 263 117 8 95 341 153 374 1.63e-32 125
Msa1333230 MtrunA17_Chr6g0453671 37.419 155 94 1 61 215 121 272 2.72e-31 121
Msa1333230 MtrunA17_Chr4g0072831 33.005 203 93 4 95 296 125 285 4.27e-29 114
Msa1333230 MtrunA17_Chr6g0453681 45.455 121 63 1 95 215 155 272 5.07e-29 117
Msa1333230 MtrunA17_Chr6g0468751 45.833 120 62 1 95 214 155 271 8.28e-29 116
Msa1333230 MtrunA17_Chr3g0132671 39.716 141 82 1 77 217 167 304 3.27e-28 114
Msa1333230 MtrunA17_Chr5g0399911 36.025 161 72 6 96 232 154 307 4.26e-22 95.9
Msa1333230 MtrunA17_Chr8g0380661 36.306 157 84 5 95 240 135 286 1.67e-21 93.6
Msa1333230 MtrunA17_Chr3g0131061 39.535 129 61 4 96 214 139 260 3.14e-21 93.2
Msa1333230 MtrunA17_Chr8g0381821 36.601 153 77 5 96 235 139 284 5.99e-21 92.4
Msa1333230 MtrunA17_Chr8g0385281 38.760 129 62 4 96 214 140 261 7.93e-21 92.0
Msa1333230 MtrunA17_Chr5g0397101 40.000 125 66 5 96 216 208 327 1.75e-20 92.4
Msa1333230 MtrunA17_Chr4g0055451 37.209 129 64 4 96 214 140 261 2.23e-20 90.5
Msa1333230 MtrunA17_Chr3g0091421 49.412 85 42 1 96 180 148 231 4.21e-20 88.2
Msa1333230 MtrunA17_Chr4g0074811 38.168 131 72 5 96 222 232 357 6.80e-20 90.9
Msa1333230 MtrunA17_Chr5g0444171 38.931 131 71 5 96 222 233 358 7.83e-20 90.5
Msa1333230 MtrunA17_Chr2g0277501 37.209 129 64 4 96 214 139 260 1.69e-19 88.2
Msa1333230 MtrunA17_Chr3g0123791 36.154 130 66 4 95 214 139 261 1.78e-19 88.2
Msa1333230 MtrunA17_Chr3g0091281 48.235 85 43 1 96 180 148 231 2.38e-19 85.9
Msa1333230 MtrunA17_Chr1g0162301 37.209 129 64 4 96 214 159 280 4.13e-19 87.4
Msa1333230 MtrunA17_Chr3g0098951 38.931 131 70 5 96 222 225 349 4.89e-19 88.2
Msa1333230 MtrunA17_Chr8g0374701 42.742 124 62 5 96 215 273 391 7.06e-19 87.8
Msa1333230 MtrunA17_Chr1g0157131 38.168 131 72 5 96 222 215 340 8.29e-19 87.4
Msa1333230 MtrunA17_Chr8g0385341 39.837 123 65 4 96 214 171 288 1.06e-18 87.0
Msa1333230 MtrunA17_Chr4g0045371 36.434 129 65 4 96 214 158 279 1.75e-18 85.5
Msa1333230 MtrunA17_Chr5g0426521 35.659 129 66 4 96 214 139 260 2.40e-18 84.7
Msa1333230 MtrunA17_Chr5g0405421 38.889 126 68 4 96 217 242 362 3.34e-18 85.9
Msa1333230 MtrunA17_Chr5g0402661 36.923 130 65 4 95 214 152 274 3.90e-18 84.3
Msa1333230 MtrunA17_Chr0c02g0489761 36.000 125 71 4 96 216 219 338 5.40e-18 85.1
Msa1333230 MtrunA17_Chr4g0045261 41.406 128 65 6 96 219 282 403 5.85e-18 85.1
Msa1333230 MtrunA17_Chr8g0387671 35.115 131 76 4 96 222 207 332 2.22e-17 83.2
Msa1333230 MtrunA17_Chr8g0374571 37.984 129 63 4 96 214 158 279 2.77e-17 82.0
Msa1333230 MtrunA17_Chr7g0242561 37.302 126 70 5 96 217 197 317 3.60e-17 82.4
Msa1333230 MtrunA17_Chr1g0173541 37.903 124 68 5 96 215 193 311 3.62e-17 82.4
Msa1333230 MtrunA17_Chr5g0402551 41.129 124 64 5 96 215 279 397 4.34e-17 82.4
Msa1333230 MtrunA17_Chr4g0033371 38.889 126 66 6 95 215 212 331 5.05e-17 82.0
Msa1333230 MtrunA17_Chr1g0176421 38.889 126 68 4 96 217 302 422 5.36e-17 82.4
Msa1333230 MtrunA17_Chr1g0200601 36.667 120 67 4 89 204 164 278 7.40e-17 81.6
Msa1333230 MtrunA17_Chr3g0131181 38.938 113 60 4 96 204 170 277 8.41e-17 81.6
Msa1333230 MtrunA17_Chr5g0441691 36.000 125 71 5 96 216 209 328 1.44e-16 80.9
Msa1333230 MtrunA17_Chr4g0059751 30.128 156 100 3 65 215 202 353 1.67e-16 80.1
Msa1333230 MtrunA17_Chr7g0256001 40.323 124 65 5 95 214 285 403 1.68e-16 80.9
Msa1333230 MtrunA17_Chr7g0267771 41.593 113 57 4 96 204 229 336 1.73e-16 80.5
Msa1333230 MtrunA17_Chr4g0055431 31.250 160 81 5 95 232 145 297 5.82e-16 77.8
Msa1333230 MtrunA17_Chr4g0074791 35.878 131 75 5 96 222 237 362 7.88e-16 78.6
Msa1333230 MtrunA17_Chr1g0170281 38.938 113 60 4 96 204 259 366 3.49e-15 76.6
Msa1333230 MtrunA17_Chr3g0125381 27.326 172 120 3 52 221 45 213 4.35e-15 73.6
Msa1333230 MtrunA17_Chr1g0176751 34.959 123 71 4 96 214 265 382 4.85e-15 76.3
Msa1333230 MtrunA17_Chr7g0245031 30.128 156 100 3 65 215 254 405 8.07e-15 75.5
Msa1333230 MtrunA17_Chr1g0203881 33.871 124 73 5 96 215 182 300 6.18e-14 72.8
Msa1333230 MtrunA17_Chr5g0448721 36.842 114 63 4 95 204 236 344 8.88e-14 72.4
Msa1333230 MtrunA17_Chr8g0355131 37.302 126 67 6 96 215 188 307 1.81e-13 71.2
Msa1333230 MtrunA17_Chr8g0353621 31.496 127 79 3 96 220 147 267 2.19e-13 69.7
Msa1333230 MtrunA17_Chr1g0190131 27.485 171 95 5 71 217 102 267 3.40e-13 68.9
Msa1333230 MtrunA17_Chr4g0029241 30.508 118 80 1 96 213 262 377 5.48e-13 69.7
Msa1333230 MtrunA17_Chr4g0018201 29.193 161 77 6 91 216 891 1049 2.48e-12 68.2
Msa1333230 MtrunA17_Chr5g0428981 29.193 161 77 6 91 216 895 1053 9.70e-12 66.6
Msa1333230 MtrunA17_Chr7g0274941 28.346 127 85 2 95 217 153 277 1.82e-11 64.3
Msa1333230 MtrunA17_Chr2g0326531 30.252 119 79 2 96 213 264 379 2.59e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1333230 AT3G17510.2 58.276 290 89 3 86 345 67 354 1.33e-107 319
Msa1333230 AT3G17510.1 58.276 290 89 3 86 345 147 434 6.79e-107 320
Msa1333230 AT1G48260.2 56.115 278 93 3 95 345 62 337 9.51e-101 301
Msa1333230 AT1G48260.4 56.115 278 93 3 95 345 62 337 9.51e-101 301
Msa1333230 AT1G48260.3 56.115 278 93 3 95 345 62 337 9.51e-101 301
Msa1333230 AT1G48260.5 56.115 278 93 3 95 345 62 337 9.51e-101 301
Msa1333230 AT1G48260.1 56.115 278 93 3 95 345 147 422 7.50e-100 302
Msa1333230 AT5G21326.1 42.466 292 131 5 86 344 140 427 2.17e-72 231
Msa1333230 AT1G30270.3 46.825 252 110 6 96 327 71 318 4.47e-71 226
Msa1333230 AT1G30270.1 46.825 252 110 6 96 327 168 415 2.92e-70 227
Msa1333230 AT1G30270.2 46.825 252 110 6 96 327 168 415 3.63e-70 227
Msa1333230 AT2G26980.5 44.697 264 126 4 95 342 150 409 5.66e-70 225
Msa1333230 AT2G26980.3 42.857 280 126 4 95 344 150 425 1.21e-69 224
Msa1333230 AT2G26980.4 42.857 280 126 4 95 344 160 435 1.66e-69 224
Msa1333230 AT2G26980.1 47.639 233 107 2 95 312 150 382 8.94e-69 220
Msa1333230 AT1G01140.1 43.548 248 120 4 96 327 156 399 3.37e-67 218
Msa1333230 AT1G01140.3 43.548 248 120 4 96 327 156 399 3.80e-67 218
Msa1333230 AT1G01140.2 43.600 250 119 5 96 327 156 401 1.87e-65 214
Msa1333230 AT5G45820.1 38.206 301 157 6 65 341 117 412 9.25e-61 201
Msa1333230 AT5G01810.1 44.954 218 103 3 95 299 147 360 8.65e-60 198
Msa1333230 AT5G01810.2 44.954 218 103 3 95 299 147 360 8.65e-60 198
Msa1333230 AT4G14580.1 44.762 210 110 3 93 299 156 362 1.68e-58 195
Msa1333230 AT5G35410.1 36.120 299 142 6 95 350 147 439 2.13e-57 192
Msa1333230 AT4G24400.1 37.671 292 139 7 86 340 136 421 3.28e-57 192
Msa1333230 AT4G24400.2 39.922 258 131 5 86 325 136 387 3.83e-57 191
Msa1333230 AT2G30360.1 45.673 208 110 3 95 299 158 365 1.00e-56 191
Msa1333230 AT5G57630.3 45.933 209 105 4 95 298 59 264 7.12e-56 185
Msa1333230 AT3G23000.1 47.668 193 95 4 93 284 160 347 7.89e-56 188
Msa1333230 AT5G57630.2 45.933 209 105 4 95 298 147 352 3.30e-55 186
Msa1333230 AT5G35410.2 40.351 228 115 3 95 303 147 372 3.80e-55 185
Msa1333230 AT5G57630.1 45.933 209 105 4 95 298 147 352 4.80e-55 186
Msa1333230 AT4G30960.1 38.672 256 130 6 95 333 159 404 2.94e-54 184
Msa1333230 AT5G58380.1 37.603 242 116 2 95 303 147 386 4.90e-54 185
Msa1333230 AT5G45810.1 35.017 297 137 6 95 341 163 453 1.39e-53 184
Msa1333230 AT5G10930.1 41.107 253 122 6 95 327 148 393 1.85e-53 182
Msa1333230 AT5G25110.1 42.601 223 105 5 95 298 178 396 1.03e-52 181
Msa1333230 AT5G01820.1 44.231 208 110 1 98 299 160 367 4.87e-52 179
Msa1333230 AT1G29230.1 34.130 293 141 5 95 341 209 495 5.76e-51 177
Msa1333230 AT4G18700.1 32.542 295 144 6 95 341 161 448 2.07e-50 175
Msa1333230 AT2G26980.2 67.290 107 35 0 95 201 150 256 6.58e-49 166
Msa1333230 AT2G25090.1 39.300 257 127 8 95 327 152 403 1.22e-48 170
Msa1333230 AT5G21222.1 55.147 136 61 0 93 228 147 282 7.58e-48 173
Msa1333230 AT5G21222.2 55.147 136 61 0 93 228 147 282 7.58e-48 173
Msa1333230 AT5G21222.4 55.147 136 61 0 93 228 147 282 7.58e-48 173
Msa1333230 AT5G21222.3 55.147 136 61 0 93 228 147 282 7.58e-48 173
Msa1333230 AT2G34180.1 31.633 294 144 5 95 341 192 475 1.31e-47 168
Msa1333230 AT5G07070.1 36.975 238 128 5 97 313 149 385 1.31e-47 167
Msa1333230 AT5G01810.3 56.911 123 53 0 95 217 147 269 4.77e-47 164
Msa1333230 AT2G38490.1 37.443 219 121 2 93 304 161 370 2.29e-43 155
Msa1333230 AT3G29160.3 46.281 121 62 1 95 215 156 273 4.26e-30 118
Msa1333230 AT3G01090.3 46.281 121 62 1 95 215 155 272 5.47e-30 120
Msa1333230 AT3G01090.1 46.281 121 62 1 95 215 155 272 5.47e-30 120
Msa1333230 AT3G01090.2 46.281 121 62 1 95 215 178 295 6.82e-30 120
Msa1333230 AT3G29160.1 46.281 121 62 1 95 215 156 273 3.25e-29 118
Msa1333230 AT3G29160.2 46.281 121 62 1 95 215 156 273 3.25e-29 118
Msa1333230 AT5G39440.1 43.077 130 68 3 86 214 146 270 5.36e-27 111
Msa1333230 AT1G10940.2 40.310 129 60 4 96 214 147 268 1.09e-21 95.1
Msa1333230 AT1G10940.1 40.310 129 60 4 96 214 139 260 1.27e-21 95.1
Msa1333230 AT5G66210.6 34.466 206 117 6 96 288 205 405 2.55e-21 94.7
Msa1333230 AT5G66210.4 34.466 206 117 6 96 288 205 405 2.55e-21 94.7
Msa1333230 AT5G66210.5 34.466 206 117 6 96 288 205 405 3.40e-21 94.7
Msa1333230 AT5G66210.1 34.466 206 117 6 96 288 205 405 3.68e-21 94.7
Msa1333230 AT5G66210.2 34.466 206 117 6 96 288 205 405 3.68e-21 94.7
Msa1333230 AT5G66210.3 34.466 206 117 6 96 288 205 405 4.27e-21 94.7
Msa1333230 AT4G40010.1 38.346 133 65 4 95 217 138 263 7.65e-21 92.4
Msa1333230 AT3G50500.2 40.310 129 67 3 96 214 158 286 2.24e-20 91.7
Msa1333230 AT1G78290.3 37.984 129 63 4 96 214 139 260 3.46e-20 90.5
Msa1333230 AT1G78290.2 37.984 129 63 4 96 214 139 260 3.46e-20 90.5
Msa1333230 AT5G63650.1 37.984 129 63 4 96 214 139 260 3.95e-20 90.5
Msa1333230 AT4G23650.1 39.695 131 70 5 96 222 219 344 4.08e-20 91.7
Msa1333230 AT3G50500.1 40.310 129 60 4 96 214 158 279 6.05e-20 90.1
Msa1333230 AT4G04720.2 41.270 126 65 5 96 217 221 341 8.63e-20 90.9
Msa1333230 AT4G04720.1 41.270 126 65 5 96 217 221 341 8.63e-20 90.9
Msa1333230 AT5G08590.2 36.434 129 65 4 96 214 63 184 1.15e-19 88.2
Msa1333230 AT3G20410.2 35.878 131 75 4 96 222 232 357 1.46e-19 90.1
Msa1333230 AT3G20410.1 35.878 131 75 4 96 222 232 357 1.46e-19 90.1
Msa1333230 AT2G17890.1 40.476 126 66 4 96 217 251 371 1.64e-19 90.1
Msa1333230 AT1G50700.3 36.641 131 74 4 96 222 214 339 2.40e-19 89.4
Msa1333230 AT5G08590.1 36.434 129 65 4 96 214 139 260 2.54e-19 88.2
Msa1333230 AT3G50530.1 41.600 125 64 5 96 216 293 412 2.55e-19 89.7
Msa1333230 AT1G50700.1 36.641 131 74 4 96 222 214 339 2.59e-19 89.4
Msa1333230 AT1G50700.2 36.641 131 74 4 96 222 214 339 2.88e-19 89.4
Msa1333230 AT2G23030.1 30.366 191 98 7 53 214 76 260 2.91e-19 87.8
Msa1333230 AT1G60940.1 37.209 129 64 4 96 214 139 260 5.24e-19 87.4
Msa1333230 AT1G60940.2 37.209 129 64 4 96 214 139 260 5.24e-19 87.4
Msa1333230 AT4G36070.1 40.714 140 67 6 83 217 206 334 1.13e-18 87.4
Msa1333230 AT1G61950.1 37.405 131 73 5 96 222 240 365 1.32e-18 87.4
Msa1333230 AT4G36070.2 40.714 140 67 6 83 217 206 334 1.37e-18 87.4
Msa1333230 AT4G04740.4 39.683 126 67 4 96 217 210 330 2.39e-18 86.7
Msa1333230 AT4G04740.6 39.683 126 67 4 96 217 210 330 2.39e-18 86.7
Msa1333230 AT4G04740.5 39.683 126 67 4 96 217 210 330 2.39e-18 86.7
Msa1333230 AT4G04740.3 39.683 126 67 4 96 217 210 330 2.39e-18 86.7
Msa1333230 AT4G04740.1 39.683 126 67 4 96 217 210 330 2.39e-18 86.7
Msa1333230 AT4G04740.7 39.683 126 67 4 96 217 210 330 2.39e-18 86.7
Msa1333230 AT4G04740.2 39.683 126 67 4 96 217 210 330 2.62e-18 86.3
Msa1333230 AT3G19100.1 41.221 131 67 6 96 222 289 413 3.24e-18 86.3
Msa1333230 AT4G33950.2 35.659 129 66 4 96 214 156 277 4.29e-18 84.7
Msa1333230 AT5G12180.1 37.600 125 69 5 96 216 214 333 4.32e-18 85.9
Msa1333230 AT4G33950.1 35.659 129 66 4 96 214 156 277 5.89e-18 84.3
Msa1333230 AT5G66880.1 37.984 129 63 4 96 214 157 278 6.55e-18 84.3
Msa1333230 AT5G66880.2 37.984 129 63 4 96 214 157 278 6.55e-18 84.3
Msa1333230 AT4G21940.1 37.302 126 70 5 96 217 243 363 1.37e-17 84.3
Msa1333230 AT4G21940.2 37.302 126 70 5 96 217 243 363 1.39e-17 84.3
Msa1333230 AT4G21940.3 37.302 126 70 5 96 217 243 363 1.45e-17 84.0
Msa1333230 AT3G51850.3 37.302 126 70 5 96 217 195 315 1.72e-17 83.6
Msa1333230 AT5G19360.1 36.800 125 70 5 96 216 209 328 1.85e-17 84.0
Msa1333230 AT1G49580.1 40.310 129 67 6 95 219 294 416 2.73e-17 83.6
Msa1333230 AT3G51850.2 37.903 124 68 5 96 215 195 313 3.08e-17 83.2
Msa1333230 AT4G09570.1 40.708 113 58 4 96 204 166 273 3.16e-17 83.2
Msa1333230 AT3G50530.2 40.984 122 65 5 99 216 325 443 4.20e-17 82.8
Msa1333230 AT3G51850.1 37.903 124 68 5 96 215 195 313 4.36e-17 82.8
Msa1333230 AT5G12480.2 37.398 123 68 5 96 214 106 223 4.76e-17 82.4
Msa1333230 AT5G23580.1 42.105 114 57 4 95 204 162 270 5.15e-17 82.4
Msa1333230 AT5G12480.1 37.398 123 68 5 96 214 200 317 5.60e-17 82.4
Msa1333230 AT1G76040.3 38.525 122 66 5 96 213 253 369 7.38e-17 82.0
Msa1333230 AT1G76040.2 38.211 123 67 5 96 214 253 370 7.76e-17 82.0
Msa1333230 AT3G10660.2 39.823 113 59 4 96 204 327 434 7.87e-17 82.0
Msa1333230 AT3G10660.1 39.823 113 59 4 96 204 327 434 7.87e-17 82.0
Msa1333230 AT2G41860.2 35.606 132 76 5 95 222 194 320 9.82e-17 81.6
Msa1333230 AT5G04870.1 38.938 113 60 4 96 204 291 398 1.75e-16 81.3
Msa1333230 AT4G35310.2 37.302 126 70 4 95 216 237 357 2.40e-16 80.5
Msa1333230 AT4G35310.1 37.302 126 70 4 95 216 237 357 2.40e-16 80.5
Msa1333230 AT1G35670.1 38.938 113 60 4 96 204 167 274 5.96e-16 79.3
Msa1333230 AT3G08730.1 32.051 156 96 5 65 215 240 390 1.16e-15 78.2
Msa1333230 AT3G08730.2 32.051 156 96 5 65 215 240 390 1.16e-15 78.2
Msa1333230 AT2G38910.1 39.823 113 59 4 96 204 275 382 1.22e-15 78.6
Msa1333230 AT4G04700.1 34.127 126 74 4 96 217 173 293 1.26e-15 78.2
Msa1333230 AT4G04695.1 34.646 127 72 4 96 217 173 293 2.35e-15 77.4
Msa1333230 AT3G08720.1 30.769 156 98 4 65 215 246 396 5.05e-15 76.3
Msa1333230 AT3G08720.3 30.769 156 98 4 65 215 246 396 5.05e-15 76.3
Msa1333230 AT3G08720.4 30.769 156 98 4 65 215 246 396 5.05e-15 76.3
Msa1333230 AT3G08720.2 30.769 156 98 4 65 215 246 396 5.05e-15 76.3
Msa1333230 AT2G17290.1 35.714 126 72 4 95 216 225 345 6.04e-15 76.3
Msa1333230 AT2G17290.2 35.714 126 72 4 95 216 225 345 6.04e-15 76.3
Msa1333230 AT1G76040.1 39.604 101 55 4 120 216 36 134 2.32e-14 73.6
Msa1333230 AT1G76040.4 39.604 101 55 4 120 216 36 134 2.32e-14 73.6
Msa1333230 AT2G35890.2 33.588 131 78 5 96 222 273 398 2.39e-14 74.3
Msa1333230 AT2G35890.1 33.588 131 78 5 96 222 273 398 2.39e-14 74.3
Msa1333230 AT2G20050.1 30.968 155 96 4 66 214 889 1038 2.48e-13 71.6
Msa1333230 AT2G20050.2 30.968 155 96 4 66 214 886 1035 2.54e-13 71.6
Msa1333230 AT4G32830.1 29.771 131 84 3 86 214 158 282 8.72e-12 65.5
Msa1333230 AT3G10540.1 32.479 117 68 3 95 202 181 295 9.63e-12 66.2
Msa1333230 AT5G04510.2 32.479 117 68 3 95 202 180 294 1.07e-11 65.9
Msa1333230 AT5G04510.1 32.479 117 68 3 95 202 180 294 1.24e-11 66.2

Find 98 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTTTACCCCAACAATTT+AGG 0.142520 8_4:-53260203 Msa1333230:CDS
GATCCCTGCCATTGTTATTC+TGG 0.153285 8_4:+53259721 None:intergenic
AGCTTTAGTGATCCTGAAAT+TGG 0.203203 8_4:-53258297 Msa1333230:three_prime_UTR
GCACCAGCTGATAACCATTT+TGG 0.226077 8_4:+53259785 None:intergenic
AATCTAAAGATAACTGATTT+TGG 0.237474 8_4:-53260231 Msa1333230:CDS
TGCTTTACCCCAACAATTTA+GGG 0.262352 8_4:-53260202 Msa1333230:intron
AATCTTCTCCATCAGATCTT+TGG 0.263257 8_4:+53259097 None:intergenic
GAAAACTGTAGAGTCATATT+TGG 0.264040 8_4:-53258526 Msa1333230:three_prime_UTR
AGCTCACTAGTGCTTTCCTT+GGG 0.297370 8_4:+53258556 None:intergenic
ACCAGAGATTCTTGCTAATA+GGG 0.299898 8_4:-53260042 Msa1333230:CDS
ATCTTGTATGTAGTCTTAAC+AGG 0.306320 8_4:-53259978 Msa1333230:CDS
TTGATTGCTAAATTCAAAAC+TGG 0.340391 8_4:+53258356 None:intergenic
ATCAATGCATTTCAGTTGAT+AGG 0.346820 8_4:-53259341 Msa1333230:CDS
CACCAGAGATTCTTGCTAAT+AGG 0.347708 8_4:-53260043 Msa1333230:CDS
CTTGCTAATAGGGGCTATAA+TGG 0.348954 8_4:-53260032 Msa1333230:CDS
ATATCTTACCCTAAATTGTT+GGG 0.353632 8_4:+53260194 None:intergenic
GTAGAATTAAGGAAGTGTTA+TGG 0.360157 8_4:-53258724 Msa1333230:intron
AAGATAACATACCCAATTTC+AGG 0.362050 8_4:+53258285 None:intergenic
CAGTTATCTTTAGATTCCTT+TGG 0.363070 8_4:+53260238 None:intergenic
GAAGAAGAAAAGAGTAGTTC+AGG 0.376830 8_4:-53259377 Msa1333230:CDS
CATATCTTACCCTAAATTGT+TGG 0.398553 8_4:+53260193 None:intergenic
TAAGCGGTGGTGAGTGGTAG+TGG 0.408658 8_4:+53261131 None:intergenic
AAGAAGTTATTAAATGATCT+TGG 0.418743 8_4:-53258584 Msa1333230:CDS
GAGCTCACTAGTGCTTTCCT+TGG 0.426608 8_4:+53258555 None:intergenic
CAAAGAAGATTTGTGGTTCA+AGG 0.428370 8_4:-53259699 Msa1333230:CDS
TGAAGATTCTGTGACAGAAA+TGG 0.435398 8_4:-53259075 Msa1333230:CDS
ATGGTGGCGCGTGGGGTAAT+CGG 0.443215 8_4:+53261170 None:intergenic
TGAAATGCATTGATACGAAT+TGG 0.454730 8_4:+53259350 None:intergenic
CCCCTATTAGCAAGAATCTC+TGG 0.456935 8_4:+53260041 None:intergenic
GCGTGTGCTGTAGAAGTTCC+CGG 0.463247 8_4:-53261045 Msa1333230:CDS
GTGACGCGGGTGGGTCGAGT+GGG 0.475192 8_4:+53261093 None:intergenic
ACCTTCAGTAAGTTTACCCT+TGG 0.479231 8_4:+53260717 None:intergenic
ATGGTGCATCATCAGATGTA+TGG 0.486124 8_4:-53260013 Msa1333230:CDS
GCTTTAGTGATCCTGAAATT+GGG 0.488101 8_4:-53258296 Msa1333230:three_prime_UTR
GGTGACGCGGGTGGGTCGAG+TGG 0.492820 8_4:+53261092 None:intergenic
TCTTCATGCCTAGACCTCTC+TGG 0.497077 8_4:-53259314 Msa1333230:CDS
GCAAGATTTCTATCATCAAA+AGG 0.498522 8_4:+53259948 None:intergenic
AACAAGGATCATAAAACTCT+TGG 0.499777 8_4:-53258893 Msa1333230:CDS
TGGTTTGTTTGAGAAGAGAA+TGG 0.502046 8_4:+53261151 None:intergenic
AAAACCAGAATAACAATGGC+AGG 0.504082 8_4:-53259725 Msa1333230:CDS
ATTGTATTCATAGGCTTCCA+AGG 0.507458 8_4:-53260734 Msa1333230:intron
TATCACCATCTTTCCTCCAC+CGG 0.511134 8_4:+53261026 None:intergenic
CAGGGATCAAAGAAGATTTG+TGG 0.511371 8_4:-53259706 Msa1333230:CDS
ACTCGACCCACCCGCGTCAC+CGG 0.513152 8_4:-53261090 Msa1333230:CDS
TGAGAGTAAGCGGTGGTGAG+TGG 0.513797 8_4:+53261125 None:intergenic
TCTTTCAGCCAAAGATCTGA+TGG 0.517180 8_4:-53259105 Msa1333230:CDS
TCAATGCATTTCAGTTGATA+GGG 0.519992 8_4:-53259340 Msa1333230:CDS
ACGCTCTCGGAGTGGACCAC+CGG 0.522401 8_4:+53261064 None:intergenic
CCGGAGACCGGTGACGCGGG+TGG 0.524804 8_4:+53261083 None:intergenic
CCACCCGCGTCACCGGTCTC+CGG 0.535267 8_4:-53261083 Msa1333230:CDS
AGTTCCCGGTGGAGGAAAGA+TGG 0.535806 8_4:-53261031 Msa1333230:CDS
AGATGCCTCTGTATATAGAC+AGG 0.548408 8_4:-53258701 Msa1333230:intron
ACTTCTACAGCACACGCTCT+CGG 0.548640 8_4:+53261051 None:intergenic
CGGAGTGGACCACCGGAGAC+CGG 0.548762 8_4:+53261071 None:intergenic
AAACCAAAATGGTTATCAGC+TGG 0.549443 8_4:-53259788 Msa1333230:CDS
GTGCACAAAACATTATAAAG+AGG 0.550806 8_4:-53259766 Msa1333230:CDS
GGAAGAAGAGTGAGAGTAAG+CGG 0.551427 8_4:+53261115 None:intergenic
GAAGATTTGTGGTTCAAGGA+AGG 0.553555 8_4:-53259695 Msa1333230:CDS
GCTGTAGAAGTTCCCGGTGG+AGG 0.555769 8_4:-53261039 Msa1333230:CDS
TGACGCGGGTGGGTCGAGTG+GGG 0.558230 8_4:+53261094 None:intergenic
TCAAGCAGATCACGAGGACG+AGG 0.566468 8_4:-53259666 Msa1333230:CDS
AATGATCTTGGTGTTCCCCA+AGG 0.571371 8_4:-53258572 Msa1333230:CDS
CAGCCTCTCAGTGATAATAG+AGG 0.572612 8_4:-53258870 Msa1333230:intron
GAGAAGAGAATGGTGGCGCG+TGG 0.575660 8_4:+53261161 None:intergenic
AGAAGAGAATGGTGGCGCGT+GGG 0.580259 8_4:+53261162 None:intergenic
ATCACCATCTTTCCTCCACC+GGG 0.581759 8_4:+53261027 None:intergenic
ACCACCGGAGACCGGTGACG+CGG 0.582141 8_4:+53261079 None:intergenic
ATGTATCTGAGAGGAAGATA+AGG 0.582260 8_4:-53259139 Msa1333230:CDS
AGAAGAGTGAGAGTAAGCGG+TGG 0.586254 8_4:+53261118 None:intergenic
TTGTATTCATAGGCTTCCAA+GGG 0.588010 8_4:-53260733 Msa1333230:intron
GATTTCTATCATCAAAAGGT+AGG 0.590682 8_4:+53259952 None:intergenic
CGGAGACCGGTGACGCGGGT+GGG 0.591943 8_4:+53261084 None:intergenic
TTAGCTTGAGAATGTACTTG+TGG 0.594565 8_4:-53260264 Msa1333230:intron
GCTCACTAGTGCTTTCCTTG+GGG 0.594602 8_4:+53258557 None:intergenic
TCTTGCAGTTCTCTATCAGA+AGG 0.600243 8_4:-53259931 Msa1333230:intron
CCAGAGATTCTTGCTAATAG+GGG 0.601233 8_4:-53260041 Msa1333230:CDS
CCACCGGAGACCGGTGACGC+GGG 0.602844 8_4:+53261080 None:intergenic
TATCTTACCCTAAATTGTTG+GGG 0.606983 8_4:+53260195 None:intergenic
GAAGAGAATGGTGGCGCGTG+GGG 0.611821 8_4:+53261163 None:intergenic
TACAGCACACGCTCTCGGAG+TGG 0.612388 8_4:+53261056 None:intergenic
CCCGCGTCACCGGTCTCCGG+TGG 0.617971 8_4:-53261080 Msa1333230:CDS
CCCTAAAACCAGAATAACAA+TGG 0.624271 8_4:-53259729 Msa1333230:CDS
GAAAGTGATACAAGAGAACA+AGG 0.624802 8_4:-53258909 Msa1333230:CDS
AAACCAGAATAACAATGGCA+GGG 0.627459 8_4:-53259724 Msa1333230:CDS
TCCAAGGGTAAACTTACTGA+AGG 0.634466 8_4:-53260718 Msa1333230:intron
TGATTTGACTGAGAGGATGA+AGG 0.637086 8_4:-53260983 Msa1333230:intron
CTTTCAATGATTTGACTGAG+AGG 0.637305 8_4:-53260990 Msa1333230:CDS
AAGATGGTGATAGAGCTTGT+CGG 0.658286 8_4:-53261015 Msa1333230:CDS
TCATCAGATGTATGGTCATG+TGG 0.661379 8_4:-53260005 Msa1333230:CDS
AATGTACTTGTGGATGCCAA+AGG 0.663382 8_4:-53260254 Msa1333230:CDS
GGGTTGTTGCATACAACATG+TGG 0.668468 8_4:-53260083 Msa1333230:CDS
GCGTGGGGTAATCGGAAGCG+TGG 0.673355 8_4:+53261178 None:intergenic
TTTGTTTGAGAAGAGAATGG+TGG 0.686445 8_4:+53261154 None:intergenic
TTACCTCTATTATCACTGAG+AGG 0.690210 8_4:+53258867 None:intergenic
AATTACCTGTCTATATACAG+AGG 0.717937 8_4:+53258696 None:intergenic
AGTTACAGGATGTATCTGAG+AGG 0.722663 8_4:-53259148 Msa1333230:intron
ATATAATCAAGCAGATCACG+AGG 0.727723 8_4:-53259672 Msa1333230:CDS
TGTGCTGTAGAAGTTCCCGG+TGG 0.767826 8_4:-53261042 Msa1333230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTATTTTATCTTTAATAAT+AGG - chr8_4:53259051-53259070 Msa1333230:CDS 10.0%
!! AATTATTAAACTACTATGAT+TGG + chr8_4:53259619-53259638 None:intergenic 15.0%
!!! AATCTAAAGATAACTGATTT+TGG - chr8_4:53259249-53259268 Msa1333230:intron 20.0%
!!! AAATGCGAAGTATATTATTT+TGG - chr8_4:53259330-53259349 Msa1333230:CDS 20.0%
!! CAAATTCTCCTTTATATATA+TGG - chr8_4:53259585-53259604 Msa1333230:intron 20.0%
!!! TTAAAAAGTATACCAATTCA+TGG + chr8_4:53259877-53259896 None:intergenic 20.0%
!!! TATTACCATGAAAAAGTATA+GGG + chr8_4:53260076-53260095 None:intergenic 20.0%
!!! ATTTAGAGTTCAAAGAAAAA+TGG - chr8_4:53260429-53260448 Msa1333230:intron 20.0%
!! TTTATCTCTTCAAATATAAC+AGG - chr8_4:53260705-53260724 Msa1333230:intron 20.0%
!! CATTGTATTTAGTAGAATTA+AGG - chr8_4:53260745-53260764 Msa1333230:intron 20.0%
!! AAGAAGTTATTAAATGATCT+TGG - chr8_4:53260896-53260915 Msa1333230:intron 20.0%
!!! TTGCTTTTACAAAGATTTTT+GGG + chr8_4:53261164-53261183 None:intergenic 20.0%
! TCAGTTAATGAAATTTAACG+AGG - chr8_4:53258720-53258739 Msa1333230:intron 25.0%
!! AATAAGTTGAAAACAGTTGA+TGG + chr8_4:53258963-53258982 None:intergenic 25.0%
! TAATTAAATGCTTCTCATGT+AGG + chr8_4:53259096-53259115 None:intergenic 25.0%
! ATATCTTACCCTAAATTGTT+GGG + chr8_4:53259289-53259308 None:intergenic 25.0%
!! CAAACTGTATGGAAATTTTT+AGG - chr8_4:53259369-53259388 Msa1333230:CDS 25.0%
!! TTGAACTTTTGTGAAAATCA+CGG + chr8_4:53259950-53259969 None:intergenic 25.0%
! ACAAAAGTTCAACAAAAACA+TGG - chr8_4:53259958-53259977 Msa1333230:CDS 25.0%
!! AAAAGTATAGGGTTACAATA+GGG + chr8_4:53260065-53260084 None:intergenic 25.0%
!! AAAAAGTATAGGGTTACAAT+AGG + chr8_4:53260066-53260085 None:intergenic 25.0%
!! CTATTACCATGAAAAAGTAT+AGG + chr8_4:53260077-53260096 None:intergenic 25.0%
!! TGTTATATACATTTTGAGCA+CGG - chr8_4:53260240-53260259 Msa1333230:CDS 25.0%
! AGCATCTGAATTCATATATT+AGG + chr8_4:53260841-53260860 None:intergenic 25.0%
! TTGATTGCTAAATTCAAAAC+TGG + chr8_4:53261127-53261146 None:intergenic 25.0%
!! TGCTTTTACAAAGATTTTTG+GGG + chr8_4:53261163-53261182 None:intergenic 25.0%
!!! CTTGCTTTTACAAAGATTTT+TGG + chr8_4:53261165-53261184 None:intergenic 25.0%
ACGAGGTTAATTGTATTCAT+AGG - chr8_4:53258737-53258756 Msa1333230:intron 30.0%
TAAGTTCAAATAAGTCAACG+CGG + chr8_4:53258878-53258897 None:intergenic 30.0%
TTGAAATTGCACTACTTACT+TGG - chr8_4:53259179-53259198 Msa1333230:intron 30.0%
CAGTTATCTTTAGATTCCTT+TGG + chr8_4:53259245-53259264 None:intergenic 30.0%
TATCTTACCCTAAATTGTTG+GGG + chr8_4:53259288-53259307 None:intergenic 30.0%
CATATCTTACCCTAAATTGT+TGG + chr8_4:53259290-53259309 None:intergenic 30.0%
!! TATGGAAATTTTTAGGCAGA+TGG - chr8_4:53259376-53259395 Msa1333230:CDS 30.0%
!! ATGGAAATTTTTAGGCAGAT+GGG - chr8_4:53259377-53259396 Msa1333230:CDS 30.0%
! ATCTTGTATGTAGTCTTAAC+AGG - chr8_4:53259502-53259521 Msa1333230:intron 30.0%
GATTTCTATCATCAAAAGGT+AGG + chr8_4:53259531-53259550 None:intergenic 30.0%
GCAAGATTTCTATCATCAAA+AGG + chr8_4:53259535-53259554 None:intergenic 30.0%
CCTAGTAGCCATATATATAA+AGG + chr8_4:53259596-53259615 None:intergenic 30.0%
CCTTTATATATATGGCTACT+AGG - chr8_4:53259593-53259612 Msa1333230:intron 30.0%
! GAGATTTTCAGAAACCAAAA+TGG - chr8_4:53259681-53259700 Msa1333230:CDS 30.0%
GTGCACAAAACATTATAAAG+AGG - chr8_4:53259714-53259733 Msa1333230:CDS 30.0%
!!! CCATTGTTATTCTGGTTTTA+GGG + chr8_4:53259754-53259773 None:intergenic 30.0%
TACCAATTCATGGATGTTAA+AGG + chr8_4:53259867-53259886 None:intergenic 30.0%
AAAGTATAGGGTTACAATAG+GGG + chr8_4:53260064-53260083 None:intergenic 30.0%
!!! TGTAACCCTATACTTTTTCA+TGG - chr8_4:53260068-53260087 Msa1333230:CDS 30.0%
! TTTTTCATGGTAATAGTCAC+AGG - chr8_4:53260081-53260100 Msa1333230:CDS 30.0%
! TGAAATGCATTGATACGAAT+TGG + chr8_4:53260133-53260152 None:intergenic 30.0%
ATCAATGCATTTCAGTTGAT+AGG - chr8_4:53260139-53260158 Msa1333230:intron 30.0%
! TCAATGCATTTCAGTTGATA+GGG - chr8_4:53260140-53260159 Msa1333230:intron 30.0%
! CTATTTTCTACAAACTTGCA+TGG - chr8_4:53260494-53260513 Msa1333230:intron 30.0%
! GGCAAAACTAATTTTTCGTT+TGG - chr8_4:53260515-53260534 Msa1333230:intron 30.0%
AACAAGGATCATAAAACTCT+TGG - chr8_4:53260587-53260606 Msa1333230:intron 30.0%
!! GTAGAATTAAGGAAGTGTTA+TGG - chr8_4:53260756-53260775 Msa1333230:intron 30.0%
AATTACCTGTCTATATACAG+AGG + chr8_4:53260787-53260806 None:intergenic 30.0%
GAAAACTGTAGAGTCATATT+TGG - chr8_4:53260954-53260973 Msa1333230:intron 30.0%
AAGATAACATACCCAATTTC+AGG + chr8_4:53261198-53261217 None:intergenic 30.0%
TTTGTTTGAGAAGAGAATGG+TGG + chr8_4:53258329-53258348 None:intergenic 35.0%
!! TGGTTTGTTTGAGAAGAGAA+TGG + chr8_4:53258332-53258351 None:intergenic 35.0%
CTTTCAATGATTTGACTGAG+AGG - chr8_4:53258490-53258509 Msa1333230:three_prime_UTR 35.0%
ATTGTATTCATAGGCTTCCA+AGG - chr8_4:53258746-53258765 Msa1333230:intron 35.0%
TTGTATTCATAGGCTTCCAA+GGG - chr8_4:53258747-53258766 Msa1333230:intron 35.0%
TTGTTCCAACAGTTGATTGA+TGG - chr8_4:53258797-53258816 Msa1333230:intron 35.0%
!! GTTGTTTTCACAAGCTATCA+TGG + chr8_4:53258997-53259016 None:intergenic 35.0%
CAACTGATAGTCTGATACAA+TGG - chr8_4:53259142-53259161 Msa1333230:CDS 35.0%
! TTAGCTTGAGAATGTACTTG+TGG - chr8_4:53259216-53259235 Msa1333230:intron 35.0%
TGCTTTACCCCAACAATTTA+GGG - chr8_4:53259278-53259297 Msa1333230:intron 35.0%
GACTTATGTGACAAACTGTA+TGG - chr8_4:53259358-53259377 Msa1333230:CDS 35.0%
ACCAGAGATTCTTGCTAATA+GGG - chr8_4:53259438-53259457 Msa1333230:intron 35.0%
! TTTTTCTCTCGTGAGATAAC+AGG - chr8_4:53259649-53259668 Msa1333230:intron 35.0%
!!! GTGAGATAACAGGTTTTGAA+AGG - chr8_4:53259659-53259678 Msa1333230:CDS 35.0%
AAACCAAAATGGTTATCAGC+TGG - chr8_4:53259692-53259711 Msa1333230:CDS 35.0%
!!! GTTATTCTGGTTTTAGGGTT+GGG + chr8_4:53259749-53259768 None:intergenic 35.0%
!!! TGTTATTCTGGTTTTAGGGT+TGG + chr8_4:53259750-53259769 None:intergenic 35.0%
CCCTAAAACCAGAATAACAA+TGG - chr8_4:53259751-53259770 Msa1333230:CDS 35.0%
!!! GCCATTGTTATTCTGGTTTT+AGG + chr8_4:53259755-53259774 None:intergenic 35.0%
AAAACCAGAATAACAATGGC+AGG - chr8_4:53259755-53259774 Msa1333230:CDS 35.0%
AAACCAGAATAACAATGGCA+GGG - chr8_4:53259756-53259775 Msa1333230:CDS 35.0%
CAAAGAAGATTTGTGGTTCA+AGG - chr8_4:53259781-53259800 Msa1333230:CDS 35.0%
ATATAATCAAGCAGATCACG+AGG - chr8_4:53259808-53259827 Msa1333230:CDS 35.0%
AGCCTTTAACATCCATGAAT+TGG - chr8_4:53259862-53259881 Msa1333230:intron 35.0%
TAAACTACCAGTAGTGTTCA+TGG - chr8_4:53259894-53259913 Msa1333230:intron 35.0%
AAGTATAGGGTTACAATAGG+GGG + chr8_4:53260063-53260082 None:intergenic 35.0%
GAAGAAGAAAAGAGTAGTTC+AGG - chr8_4:53260103-53260122 Msa1333230:intron 35.0%
CATTGTGCGCAAAAAAATGA+GGG + chr8_4:53260305-53260324 None:intergenic 35.0%
ACATTGTGCGCAAAAAAATG+AGG + chr8_4:53260306-53260325 None:intergenic 35.0%
! CACAATGTGATTTGAGTTAC+AGG - chr8_4:53260318-53260337 Msa1333230:intron 35.0%
ATGTATCTGAGAGGAAGATA+AGG - chr8_4:53260341-53260360 Msa1333230:intron 35.0%
AATCTTCTCCATCAGATCTT+TGG + chr8_4:53260386-53260405 None:intergenic 35.0%
TGAAGATTCTGTGACAGAAA+TGG - chr8_4:53260405-53260424 Msa1333230:intron 35.0%
GAAAGTGATACAAGAGAACA+AGG - chr8_4:53260571-53260590 Msa1333230:intron 35.0%
TTACCTCTATTATCACTGAG+AGG + chr8_4:53260616-53260635 None:intergenic 35.0%
CTCAGTGATAATAGAGGTAA+TGG - chr8_4:53260616-53260635 Msa1333230:intron 35.0%
!! GATGCAATCATTGACTCATT+CGG + chr8_4:53260647-53260666 None:intergenic 35.0%
ACTGTTATGTGAAAGACAGA+GGG + chr8_4:53260813-53260832 None:intergenic 35.0%
AACTGTTATGTGAAAGACAG+AGG + chr8_4:53260814-53260833 None:intergenic 35.0%
! AGCTTTAGTGATCCTGAAAT+TGG - chr8_4:53261183-53261202 Msa1333230:CDS 35.0%
GCTTTAGTGATCCTGAAATT+GGG - chr8_4:53261184-53261203 Msa1333230:CDS 35.0%
AAGATGGTGATAGAGCTTGT+CGG - chr8_4:53258465-53258484 Msa1333230:three_prime_UTR 40.0%
TGATTTGACTGAGAGGATGA+AGG - chr8_4:53258497-53258516 Msa1333230:three_prime_UTR 40.0%
GAATCACACCACATATGACA+TGG + chr8_4:53258702-53258721 None:intergenic 40.0%
TCCAAGGGTAAACTTACTGA+AGG - chr8_4:53258762-53258781 Msa1333230:intron 40.0%
ACCTTCAGTAAGTTTACCCT+TGG + chr8_4:53258766-53258785 None:intergenic 40.0%
TCACACCATCAATCAACTGT+TGG + chr8_4:53258805-53258824 None:intergenic 40.0%
CTGATAGTCTGATACAATGG+TGG - chr8_4:53259145-53259164 Msa1333230:intron 40.0%
AATGTACTTGTGGATGCCAA+AGG - chr8_4:53259226-53259245 Msa1333230:intron 40.0%
GTGCTTTACCCCAACAATTT+AGG - chr8_4:53259277-53259296 Msa1333230:intron 40.0%
CACCAGAGATTCTTGCTAAT+AGG - chr8_4:53259437-53259456 Msa1333230:intron 40.0%
CCAGAGATTCTTGCTAATAG+GGG - chr8_4:53259439-53259458 Msa1333230:intron 40.0%
CTTGCTAATAGGGGCTATAA+TGG - chr8_4:53259448-53259467 Msa1333230:intron 40.0%
ATGGTGCATCATCAGATGTA+TGG - chr8_4:53259467-53259486 Msa1333230:intron 40.0%
TCATCAGATGTATGGTCATG+TGG - chr8_4:53259475-53259494 Msa1333230:intron 40.0%
TCTTGCAGTTCTCTATCAGA+AGG - chr8_4:53259549-53259568 Msa1333230:intron 40.0%
CAGGGATCAAAGAAGATTTG+TGG - chr8_4:53259774-53259793 Msa1333230:CDS 40.0%
GAAGATTTGTGGTTCAAGGA+AGG - chr8_4:53259785-53259804 Msa1333230:CDS 40.0%
! AGTGTTCATGGTAGTGAGTT+TGG - chr8_4:53259906-53259925 Msa1333230:intron 40.0%
AGTATAGGGTTACAATAGGG+GGG + chr8_4:53260062-53260081 None:intergenic 40.0%
CTTTCTCAAAAAAGCCAGAG+AGG + chr8_4:53260183-53260202 None:intergenic 40.0%
!!! CTCTGGCTTTTTTGAGAAAG+AGG - chr8_4:53260183-53260202 Msa1333230:intron 40.0%
AGTTACAGGATGTATCTGAG+AGG - chr8_4:53260332-53260351 Msa1333230:intron 40.0%
TCTTTCAGCCAAAGATCTGA+TGG - chr8_4:53260375-53260394 Msa1333230:intron 40.0%
AGATGCCTCTGTATATAGAC+AGG - chr8_4:53260779-53260798 Msa1333230:intron 40.0%
GGAAGAAGAGTGAGAGTAAG+CGG + chr8_4:53258368-53258387 None:intergenic 45.0%
TATCACCATCTTTCCTCCAC+CGG + chr8_4:53258457-53258476 None:intergenic 45.0%
ATGGTACTTGAGTACGTGAC+AGG - chr8_4:53258625-53258644 Msa1333230:intron 45.0%
AATGCCAGCCATGTCATATG+TGG - chr8_4:53258691-53258710 Msa1333230:intron 45.0%
GGGTAAACTTACTGAAGGTG+AGG - chr8_4:53258767-53258786 Msa1333230:intron 45.0%
TGTGGAAGACACCTTTACTG+TGG + chr8_4:53258835-53258854 None:intergenic 45.0%
!! ACAGTAAAGGTGTCTTCCAC+AGG - chr8_4:53258834-53258853 Msa1333230:intron 45.0%
!! CAGTAAAGGTGTCTTCCACA+GGG - chr8_4:53258835-53258854 Msa1333230:intron 45.0%
AAAGAACCTTGAGATCCCTG+TGG + chr8_4:53258853-53258872 None:intergenic 45.0%
GGGTTGTTGCATACAACATG+TGG - chr8_4:53259397-53259416 Msa1333230:intron 45.0%
CCCCTATTAGCAAGAATCTC+TGG + chr8_4:53259442-53259461 None:intergenic 45.0%
! GCACCAGCTGATAACCATTT+TGG + chr8_4:53259698-53259717 None:intergenic 45.0%
! GATCCCTGCCATTGTTATTC+TGG + chr8_4:53259762-53259781 None:intergenic 45.0%
CTCACTACCATGAACACTAC+TGG + chr8_4:53259904-53259923 None:intergenic 45.0%
CAAAAAAGCCAGAGAGGTCT+AGG + chr8_4:53260177-53260196 None:intergenic 45.0%
CAGCCTCTCAGTGATAATAG+AGG - chr8_4:53260610-53260629 Msa1333230:intron 45.0%
!! AATGATCTTGGTGTTCCCCA+AGG - chr8_4:53260908-53260927 Msa1333230:intron 45.0%
AGCTCACTAGTGCTTTCCTT+GGG + chr8_4:53260927-53260946 None:intergenic 45.0%
AGAAGAGTGAGAGTAAGCGG+TGG + chr8_4:53258365-53258384 None:intergenic 50.0%
ACTTCTACAGCACACGCTCT+CGG + chr8_4:53258432-53258451 None:intergenic 50.0%
ATCACCATCTTTCCTCCACC+GGG + chr8_4:53258456-53258475 None:intergenic 50.0%
ACTTGAGTACGTGACAGGAG+AGG - chr8_4:53258630-53258649 Msa1333230:intron 50.0%
CACACCACATATGACATGGC+TGG + chr8_4:53258698-53258717 None:intergenic 50.0%
GTGAGCTACTGCCACAGTAA+AGG - chr8_4:53258821-53258840 Msa1333230:intron 50.0%
TGTCTTCCACAGGGATCTCA+AGG - chr8_4:53258844-53258863 Msa1333230:intron 50.0%
GGGTTACAATAGGGGGGAAA+AGG + chr8_4:53260056-53260075 None:intergenic 50.0%
TCTTCATGCCTAGACCTCTC+TGG - chr8_4:53260166-53260185 Msa1333230:intron 50.0%
GCTCACTAGTGCTTTCCTTG+GGG + chr8_4:53260926-53260945 None:intergenic 50.0%
GAGCTCACTAGTGCTTTCCT+TGG + chr8_4:53260928-53260947 None:intergenic 50.0%
! AGAAGAGAATGGTGGCGCGT+GGG + chr8_4:53258321-53258340 None:intergenic 55.0%
TAAGCGGTGGTGAGTGGTAG+TGG + chr8_4:53258352-53258371 None:intergenic 55.0%
TGAGAGTAAGCGGTGGTGAG+TGG + chr8_4:53258358-53258377 None:intergenic 55.0%
GCGTGTGCTGTAGAAGTTCC+CGG - chr8_4:53258435-53258454 Msa1333230:intron 55.0%
TGTGCTGTAGAAGTTCCCGG+TGG - chr8_4:53258438-53258457 Msa1333230:intron 55.0%
AGTTCCCGGTGGAGGAAAGA+TGG - chr8_4:53258449-53258468 Msa1333230:intron 55.0%
TCAAGCAGATCACGAGGACG+AGG - chr8_4:53259814-53259833 Msa1333230:intron 55.0%
! ATGGTGGCGCGTGGGGTAAT+CGG + chr8_4:53258313-53258332 None:intergenic 60.0%
! GAAGAGAATGGTGGCGCGTG+GGG + chr8_4:53258320-53258339 None:intergenic 60.0%
! GAGAAGAGAATGGTGGCGCG+TGG + chr8_4:53258322-53258341 None:intergenic 60.0%
TACAGCACACGCTCTCGGAG+TGG + chr8_4:53258427-53258446 None:intergenic 60.0%
GCTGTAGAAGTTCCCGGTGG+AGG - chr8_4:53258441-53258460 Msa1333230:intron 60.0%
GCGTGGGGTAATCGGAAGCG+TGG + chr8_4:53258305-53258324 None:intergenic 65.0%
ACGCTCTCGGAGTGGACCAC+CGG + chr8_4:53258419-53258438 None:intergenic 65.0%
TGACGCGGGTGGGTCGAGTG+GGG + chr8_4:53258389-53258408 None:intergenic 70.0%
GTGACGCGGGTGGGTCGAGT+GGG + chr8_4:53258390-53258409 None:intergenic 70.0%
ACTCGACCCACCCGCGTCAC+CGG - chr8_4:53258390-53258409 Msa1333230:intron 70.0%
ACCACCGGAGACCGGTGACG+CGG + chr8_4:53258404-53258423 None:intergenic 70.0%
CGGAGTGGACCACCGGAGAC+CGG + chr8_4:53258412-53258431 None:intergenic 70.0%
GGTGACGCGGGTGGGTCGAG+TGG + chr8_4:53258391-53258410 None:intergenic 75.0%
CGGAGACCGGTGACGCGGGT+GGG + chr8_4:53258399-53258418 None:intergenic 75.0%
CCACCCGCGTCACCGGTCTC+CGG - chr8_4:53258397-53258416 Msa1333230:intron 75.0%
CCACCGGAGACCGGTGACGC+GGG + chr8_4:53258403-53258422 None:intergenic 75.0%
! CCGGAGACCGGTGACGCGGG+TGG + chr8_4:53258400-53258419 None:intergenic 80.0%
! CCCGCGTCACCGGTCTCCGG+TGG - chr8_4:53258400-53258419 Msa1333230:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 53258285 53261217 53258285 ID=Msa1333230;Name=Msa1333230
chr8_4 mRNA 53258285 53261217 53258285 ID=Msa1333230-mRNA-1;Parent=Msa1333230;Name=Msa1333230-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.5|0.36|0.90|0.4|0.54|11|226|351
chr8_4 exon 53258285 53258406 53258285 ID=Msa1333230-mRNA-1:exon:16315;Parent=Msa1333230-mRNA-1
chr8_4 exon 53258458 53258612 53258458 ID=Msa1333230-mRNA-1:exon:16314;Parent=Msa1333230-mRNA-1
chr8_4 exon 53258702 53258731 53258702 ID=Msa1333230-mRNA-1:exon:16313;Parent=Msa1333230-mRNA-1
chr8_4 exon 53258871 53258933 53258871 ID=Msa1333230-mRNA-1:exon:16312;Parent=Msa1333230-mRNA-1
chr8_4 exon 53259040 53259162 53259040 ID=Msa1333230-mRNA-1:exon:16311;Parent=Msa1333230-mRNA-1
chr8_4 exon 53259298 53259399 53259298 ID=Msa1333230-mRNA-1:exon:16310;Parent=Msa1333230-mRNA-1
chr8_4 exon 53259658 53259831 53259658 ID=Msa1333230-mRNA-1:exon:16309;Parent=Msa1333230-mRNA-1
chr8_4 exon 53259932 53260111 53259932 ID=Msa1333230-mRNA-1:exon:16308;Parent=Msa1333230-mRNA-1
chr8_4 exon 53260203 53260276 53260203 ID=Msa1333230-mRNA-1:exon:16307;Parent=Msa1333230-mRNA-1
chr8_4 exon 53260719 53260743 53260719 ID=Msa1333230-mRNA-1:exon:16306;Parent=Msa1333230-mRNA-1
chr8_4 exon 53260984 53261217 53260984 ID=Msa1333230-mRNA-1:exon:16305;Parent=Msa1333230-mRNA-1
chr8_4 CDS 53260984 53261217 53260984 ID=Msa1333230-mRNA-1:cds;Parent=Msa1333230-mRNA-1
chr8_4 CDS 53260719 53260743 53260719 ID=Msa1333230-mRNA-1:cds;Parent=Msa1333230-mRNA-1
chr8_4 CDS 53260203 53260276 53260203 ID=Msa1333230-mRNA-1:cds;Parent=Msa1333230-mRNA-1
chr8_4 CDS 53259932 53260111 53259932 ID=Msa1333230-mRNA-1:cds;Parent=Msa1333230-mRNA-1
chr8_4 CDS 53259658 53259831 53259658 ID=Msa1333230-mRNA-1:cds;Parent=Msa1333230-mRNA-1
chr8_4 CDS 53259298 53259399 53259298 ID=Msa1333230-mRNA-1:cds;Parent=Msa1333230-mRNA-1
chr8_4 CDS 53259040 53259162 53259040 ID=Msa1333230-mRNA-1:cds;Parent=Msa1333230-mRNA-1
chr8_4 CDS 53258871 53258933 53258871 ID=Msa1333230-mRNA-1:cds;Parent=Msa1333230-mRNA-1
chr8_4 CDS 53258702 53258731 53258702 ID=Msa1333230-mRNA-1:cds;Parent=Msa1333230-mRNA-1
chr8_4 CDS 53258562 53258612 53258562 ID=Msa1333230-mRNA-1:cds;Parent=Msa1333230-mRNA-1
chr8_4 three_prime_UTR 53258458 53258561 53258458 ID=Msa1333230-mRNA-1:three_prime_utr;Parent=Msa1333230-mRNA-1
chr8_4 three_prime_UTR 53258285 53258406 53258285 ID=Msa1333230-mRNA-1:three_prime_utr;Parent=Msa1333230-mRNA-1
Gene Sequence

>Msa1333230

ATGGAACTCTTACACTTCCACGCTTCCGATTACCCCACGCGCCACCATTCTCTTCTCAAACAAACCACTACCACTCACCACCGCTTACTCTCACTCTTCTTCCCCACTCGACCCACCCGCGTCACCGGTCTCCGGTGGTCCACTCCGAGAGCGTGTGCTGTAGAAGTTCCCGGTGGAGGAAAGATGGTGATAGAGCTTGTCGGTGCTTTCAATGATTTGACTGAGAGGATGAAGGCTTCCAAGGGTAAACTTACTGAAGAATGTACTTGTGGATGCCAAAGGAATCTAAAGATAACTGATTTTGGTCTTAGTGCTTTACCCCAACAATTTAGGGCAGATGGGTTGTTGCATACAACATGTGGAAGTGCAAATTATGTTGCACCAGAGATTCTTGCTAATAGGGGCTATAATGGTGCATCATCAGATGTATGGTCATGTGGTGTTATCTTGTATGTAGTCTTAACAGGATTCCTACCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAGAAGGTTTTGAAAGGAGATTTTCAGAAACCAAAATGGTTATCAGCTGGTGCACAAAACATTATAAAGAGGATTCTTGATCCCAACCCTAAAACCAGAATAACAATGGCAGGGATCAAAGAAGATTTGTGGTTCAAGGAAGGATATAATCAAGCAGATCACGAGGACGAGGAAGACAATGAAGAAGAAAAGAGTAGTTCAGGATCACCAATTCGTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTATCTGAGAGGAAGATAAGGTTTACAACTAATCTTTCAGCCAAAGATCTGATGGAGAAGATTGAAGATTCTGTGACAGAAATGGAATTTAGAGTTCAAAGAAAAATGGCAAAGTTAGTAATGAAAGTGATACAAGAGAACAAGGATCATAAAACTCTTGGCAGCCTCTCAGTGATAATAGAGTGTTATGGAGATGCCTCTGTATATAGACAGCTATGCAAGAAGTTATTAAATGATCTTGGTGTTCCCCAAGGAAAGCACTAG
Protein sequence

>Msa1333230

MELLHFHASDYPTRHHSLLKQTTTTHHRLLSLFFPTRPTRVTGLRWSTPRACAVEVPGGGKMVIELVGAFNDLTERMKASKGKLTEECTCGCQRNLKITDFGLSALPQQFRADGLLHTTCGSANYVAPEILANRGYNGASSDVWSCGVILYVVLTGFLPFDDRNLAVLYQKVLKGDFQKPKWLSAGAQNIIKRILDPNPKTRITMAGIKEDLWFKEGYNQADHEDEEDNEEEKSSSGSPIRINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTTNLSAKDLMEKIEDSVTEMEFRVQRKMAKLVMKVIQENKDHKTLGSLSVIIECYGDASVYRQLCKKLLNDLGVPQGKH*