AlfalfaGEDB | Msa1334890

M. sativa cultivar zhongmu-4 / Msa1334890

KEGG: K09391
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02319.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1334890	KEH31863.1	100.000	68	0	0	1	68	1	68	4.57e-40	144

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1334890	sp\|Q8LSZ4\|E2FE_ARATH	78.947	57	12	0	12	68	29	85	1.53e-27	104

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1334890	A0A072US47	100.000	68	0	0	1	68	1	68	2.18e-40	144

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TFs/TRs:

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Gene ID	Type	Classification
Msa1334890	TF	E2F-DP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1334890	MtrunA17_Chr4g0059551	100.000	68	0	0	1	68	1	68	6.90e-42	139

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1334890	AT3G48160.1	78.947	57	12	12	68	29	85	1.39e-28	104
Msa1334890	AT3G48160.2	78.947	57	12	12	68	29	85	1.56e-28	104
Msa1334890	AT3G01330.1	75.000	56	14	13	68	17	72	5.71e-24	92.0
Msa1334890	AT5G14960.1	75.000	56	14	13	68	9	64	1.30e-22	88.6

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Find 36 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACGATGTTCGTTTAAT+TGG	0.211016	8_4:+55680778	Msa1334890:CDS
AAGAGGGTGTTTGTGTGTGG+CGG	0.559507	8_4:-55680426	None:intergenic
AATTTCGAATTTCAGATCCA+TGG	0.497190	8_4:+55680567	Msa1334890:exon
ACACTTACTTGGTGCATAAG+AGG	0.500577	8_4:-55680654	None:intergenic
ACTTGGTGCATAAGAGGCCG+AGG	0.537885	8_4:-55680648	None:intergenic
AGAATTCAAATACGAGGTTG+CGG	0.578791	8_4:+55680212	Msa1334890:five_prime_UTR
AGAGCCGTTTAGATATAAAA+GGG	0.513466	8_4:-55680456	None:intergenic
AGAGGGTGTTTGTGTGTGGC+GGG	0.533655	8_4:-55680425	None:intergenic
AGCCGTTTAGATATAAAAGG+GGG	0.695293	8_4:-55680454	None:intergenic
ATAATGAATACCTAATTTGG+CGG	0.587773	8_4:-55680815	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAAGAGAATTCAAATACG+AGG	+	chr8_4:55680206-55680225	Msa1334890:five_prime_UTR	30.0%
TTCATGGATAGATAGATAGA+TGG	-	chr8_4:55680248-55680267	None:intergenic	30.0%
AGAGCCGTTTAGATATAAAA+GGG	-	chr8_4:55680459-55680478	None:intergenic	30.0%
GAGAGATGTTTGATGAATTA+AGG	-	chr8_4:55680534-55680553	None:intergenic	30.0%
AATTTCGAATTTCAGATCCA+TGG	+	chr8_4:55680567-55680586	Msa1334890:exon	30.0%
AAAGACGATGTTCGTTTAAT+TGG	+	chr8_4:55680778-55680797	Msa1334890:CDS	30.0%
AACAGTTGTTAATGATGTTC+AGG	+	chr8_4:55680898-55680917	Msa1334890:intron	30.0%
GATAAGAGAATTCAAATACG+AGG	+	chr8_4:55680206-55680225	Msa1334890:five_prime_UTR	30.0%
TTCATGGATAGATAGATAGA+TGG	-	chr8_4:55680248-55680267	None:intergenic	30.0%
AGAGCCGTTTAGATATAAAA+GGG	-	chr8_4:55680459-55680478	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	55680196	55680972	55680196	ID=Msa1334890;Name=Msa1334890
chr8_4	mRNA	55680196	55680972	55680196	ID=Msa1334890-mRNA-1;Parent=Msa1334890;Name=Msa1334890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=390\|1\|1\|1\|1\|1\|3\|0\|68
chr8_4	exon	55680196	55680668	55680196	ID=Msa1334890-mRNA-1:exon:17326;Parent=Msa1334890-mRNA-1
chr8_4	exon	55680759	55680826	55680759	ID=Msa1334890-mRNA-1:exon:17327;Parent=Msa1334890-mRNA-1
chr8_4	exon	55680920	55680972	55680920	ID=Msa1334890-mRNA-1:exon:17328;Parent=Msa1334890-mRNA-1
chr8_4	five_prime_UTR	55680196	55680585	55680196	ID=Msa1334890-mRNA-1:five_prime_utr;Parent=Msa1334890-mRNA-1
chr8_4	CDS	55680586	55680668	55680586	ID=Msa1334890-mRNA-1:cds;Parent=Msa1334890-mRNA-1
chr8_4	CDS	55680759	55680826	55680759	ID=Msa1334890-mRNA-1:cds;Parent=Msa1334890-mRNA-1
chr8_4	CDS	55680920	55680972	55680920	ID=Msa1334890-mRNA-1:cds;Parent=Msa1334890-mRNA-1

Gene Sequence	>Msa1334890 ATGGCTGCTTCTTCCTCCGATCCTCCTTCACGACACCACACTTACGATCGTAAACAAAAATCCCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTATAACAAAGACGATGTTCGTTTAATTGGTCTCGACGATGCTGCCGCCAAATTAGGTGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTCTCGAAAGCATCGGG
Protein sequence	>Msa1334890 MAASSSDPPSRHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIG