Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335790 | XP_024626902.1 | 60.714 | 308 | 89 | 6 | 1 | 297 | 1 | 287 | 6.64e-113 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335790 | sp|Q9FY93|NAC83_ARATH | 33.333 | 147 | 85 | 5 | 11 | 154 | 20 | 156 | 8.95e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335790 | G7I4G0 | 75.111 | 225 | 26 | 4 | 98 | 304 | 5 | 217 | 4.98e-106 | 317 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1335790 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335790 | MtrunA17_Chr1g0168571 | 52.905 | 327 | 108 | 9 | 1 | 297 | 1 | 311 | 6.99e-100 | 296 |
| Msa1335790 | MtrunA17_Chr7g0274971 | 70.192 | 208 | 47 | 2 | 1 | 201 | 1 | 200 | 8.31e-97 | 284 |
| Msa1335790 | MtrunA17_Chr1g0174911 | 46.746 | 338 | 110 | 10 | 1 | 297 | 1 | 309 | 4.79e-88 | 266 |
| Msa1335790 | MtrunA17_Chr7g0263931 | 33.758 | 157 | 89 | 5 | 11 | 159 | 17 | 166 | 3.22e-17 | 80.9 |
| Msa1335790 | MtrunA17_Chr7g0214071 | 31.481 | 162 | 99 | 4 | 11 | 170 | 21 | 172 | 2.14e-15 | 74.3 |
| Msa1335790 | MtrunA17_Chr8g0385991 | 32.278 | 158 | 81 | 5 | 11 | 155 | 20 | 164 | 4.20e-13 | 67.4 |
| Msa1335790 | MtrunA17_Chr2g0326361 | 27.465 | 284 | 146 | 11 | 11 | 255 | 20 | 282 | 1.36e-12 | 67.4 |
| Msa1335790 | MtrunA17_Chr3g0139331 | 26.562 | 192 | 127 | 6 | 11 | 195 | 17 | 201 | 1.35e-11 | 64.3 |
| Msa1335790 | MtrunA17_Chr7g0252971 | 30.233 | 172 | 98 | 7 | 11 | 167 | 14 | 178 | 2.64e-11 | 63.5 |
| Msa1335790 | MtrunA17_Chr4g0047841 | 33.333 | 129 | 77 | 4 | 11 | 137 | 21 | 142 | 3.06e-11 | 63.5 |
| Msa1335790 | MtrunA17_Chr3g0130101 | 31.875 | 160 | 96 | 8 | 11 | 165 | 13 | 164 | 8.10e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335790 | AT5G13180.1 | 33.333 | 147 | 85 | 5 | 11 | 154 | 20 | 156 | 9.10e-13 | 67.4 |
| Msa1335790 | AT5G62380.2 | 32.237 | 152 | 94 | 6 | 11 | 159 | 13 | 158 | 4.30e-12 | 66.2 |
| Msa1335790 | AT5G62380.1 | 32.237 | 152 | 94 | 6 | 11 | 159 | 13 | 158 | 4.30e-12 | 66.2 |
| Msa1335790 | AT2G24430.2 | 30.000 | 150 | 95 | 4 | 11 | 157 | 22 | 164 | 4.39e-12 | 66.2 |
| Msa1335790 | AT2G24430.1 | 30.000 | 150 | 95 | 4 | 11 | 157 | 22 | 164 | 4.39e-12 | 66.2 |
| Msa1335790 | AT3G10480.2 | 34.416 | 154 | 87 | 8 | 11 | 158 | 33 | 178 | 6.55e-12 | 66.2 |
| Msa1335790 | AT3G15510.1 | 27.660 | 188 | 107 | 7 | 11 | 182 | 23 | 197 | 1.85e-11 | 64.7 |
Find 57 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCATTTGATTGACATTT+TGG | 0.106202 | tig0000674:-85501 | None:intergenic |
| AGTGGCAGATTTCTTCTTTA+AGG | 0.196237 | tig0000674:-82039 | None:intergenic |
| TAAAGAATCCTTGGGAGATT+TGG | 0.224375 | tig0000674:+81961 | Msa1335790:CDS |
| AATCTCCCAAGGATTCTTTA+TGG | 0.228130 | tig0000674:-81958 | None:intergenic |
| CCAGAAAAGACCGTGGTTCT+TGG | 0.260366 | tig0000674:+85555 | Msa1335790:CDS |
| TAGCAATGTTTGCCAGGATT+TGG | 0.273310 | tig0000674:-86253 | None:intergenic |
| AAACGTTTGATTCGTACTAT+TGG | 0.295360 | tig0000674:+82065 | Msa1335790:CDS |
| AAAGAATCCTTGGGAGATTT+GGG | 0.315347 | tig0000674:+81962 | Msa1335790:CDS |
| TTGATTCGTACTATTGGAAT+TGG | 0.345874 | tig0000674:+82071 | Msa1335790:CDS |
| TTCAAGAACATTGATATAGT+TGG | 0.354618 | tig0000674:-81919 | None:intergenic |
| TCATCAAGTGAGAATTTGAT+TGG | 0.398760 | tig0000674:-82592 | None:intergenic |
| TTGATACCATAAAGAATCCT+TGG | 0.401306 | tig0000674:+81952 | Msa1335790:CDS |
| ATCTTTGATTAACAATGCTT+CGG | 0.415664 | tig0000674:+82238 | Msa1335790:CDS |
| TCAAGAACATTGATATAGTT+GGG | 0.434618 | tig0000674:-81918 | None:intergenic |
| AGTATGGTAACTTACAGATA+TGG | 0.443956 | tig0000674:-82672 | None:intergenic |
| GAACCAAAATGTCAATCAAA+TGG | 0.458333 | tig0000674:+85498 | Msa1335790:CDS |
| GCAAGTTCTCACTCATATCA+TGG | 0.460346 | tig0000674:+81993 | Msa1335790:CDS |
| TAAACATAGCAATGTTTGCC+AGG | 0.462499 | tig0000674:-86259 | None:intergenic |
| CAAGGAAAGACAGTTGTTCC+CGG | 0.469375 | tig0000674:+82635 | Msa1335790:CDS |
| ACAAATAATACTTACAATGT+TGG | 0.484031 | tig0000674:-85592 | None:intergenic |
| TCTGCATAGAACATAATTGC+TGG | 0.484592 | tig0000674:-82516 | None:intergenic |
| ATTGAAATGATTCCAAATCC+TGG | 0.485538 | tig0000674:+86241 | Msa1335790:CDS |
| ATGAAGATGGTGATATCTCT+TGG | 0.494027 | tig0000674:+86155 | Msa1335790:CDS |
| GGAGAAAGGTGGGAAATACT+TGG | 0.497376 | tig0000674:+85532 | Msa1335790:CDS |
| AATCAAATGGTGGACACAAA+AGG | 0.500915 | tig0000674:+85511 | Msa1335790:CDS |
| TGATACCATAAAGAATCCTT+GGG | 0.502233 | tig0000674:+81953 | Msa1335790:CDS |
| ATTATAAACAAAGATGAAGA+TGG | 0.538976 | tig0000674:+86142 | Msa1335790:CDS |
| TCTCACTTGATGAATAGCAT+TGG | 0.540753 | tig0000674:+82602 | Msa1335790:CDS |
| AGGAAGGTTAATCGAAGAGG+AGG | 0.555973 | tig0000674:+86216 | Msa1335790:CDS |
| AAAGAGACCGGCCAAACCCT+AGG | 0.557513 | tig0000674:+82134 | Msa1335790:CDS |
| TATCGTGAACTTTATTGTAG+AGG | 0.559597 | tig0000674:-81887 | None:intergenic |
| CGAAGAAGTTCACCATCTGT+AGG | 0.564532 | tig0000674:-81858 | None:intergenic |
| ACACTTCTCAAGATGGTGGA+TGG | 0.567014 | tig0000674:+82189 | Msa1335790:CDS |
| AGTATAGTTGACAAAGAGAC+CGG | 0.568733 | tig0000674:+82122 | Msa1335790:CDS |
| AAGAGTTACACTTCTCAAGA+TGG | 0.569646 | tig0000674:+82182 | Msa1335790:CDS |
| GAACTCATAGAGGCGAATGA+AGG | 0.573007 | tig0000674:+86196 | Msa1335790:CDS |
| TTTAGGACATCATTGTTTCG+AGG | 0.573378 | tig0000674:+85460 | Msa1335790:intron |
| AACTCTTCCCAAATCTCCCA+AGG | 0.573940 | tig0000674:-81969 | None:intergenic |
| TTCTCACTCATATCATGGAA+AGG | 0.587566 | tig0000674:+81998 | Msa1335790:CDS |
| ACATTGATATAGTTGGGCAC+TGG | 0.596165 | tig0000674:-81912 | None:intergenic |
| TGGTGGACACAAAAGGAGAA+AGG | 0.597243 | tig0000674:+85518 | Msa1335790:CDS |
| GACAGTTGTTCCCGGACCTG+CGG | 0.611545 | tig0000674:+82643 | Msa1335790:CDS |
| TGTTAATCAAAGATATGTGA+AGG | 0.617441 | tig0000674:-82229 | None:intergenic |
| CCAAAATGTCAATCAAATGG+TGG | 0.617859 | tig0000674:+85501 | Msa1335790:CDS |
| TCATAGAGGCGAATGAAGGA+AGG | 0.619859 | tig0000674:+86200 | Msa1335790:CDS |
| GGACACAAAAGGAGAAAGGT+GGG | 0.621854 | tig0000674:+85522 | Msa1335790:CDS |
| GTACTATTGGAATTGGTACG+TGG | 0.623666 | tig0000674:+82078 | Msa1335790:CDS |
| AGTTACACTTCTCAAGATGG+TGG | 0.626247 | tig0000674:+82185 | Msa1335790:CDS |
| AGCATTGGACAAGATAAGCA+AGG | 0.636949 | tig0000674:+82617 | Msa1335790:CDS |
| TGGACACAAAAGGAGAAAGG+TGG | 0.644978 | tig0000674:+85521 | Msa1335790:CDS |
| AAGTGTAACTCTTCTCAAAG+CGG | 0.648652 | tig0000674:-82172 | None:intergenic |
| TACTATTGGAATTGGTACGT+GGG | 0.648722 | tig0000674:+82079 | Msa1335790:CDS |
| TGAAGGAAGGTTAATCGAAG+AGG | 0.648808 | tig0000674:+86213 | Msa1335790:CDS |
| ACGAATCAAACGTTTACTAG+TGG | 0.651740 | tig0000674:-82057 | None:intergenic |
| ACGTGGGAAGCTGAAGACAC+CGG | 0.664319 | tig0000674:+82095 | Msa1335790:CDS |
| AGCTTTAAGTCCAAGAACCA+CGG | 0.675233 | tig0000674:-85565 | None:intergenic |
| TACTTGGCCAGAAAAGACCG+TGG | 0.736153 | tig0000674:+85548 | Msa1335790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | tig0000674:83665-83684 | Msa1335790:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | tig0000674:83664-83683 | Msa1335790:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | tig0000674:83665-83684 | None:intergenic | 0.0% |
| !!! | AACAATATTTTTTATGAAAT+TGG | + | tig0000674:82897-82916 | Msa1335790:intron | 10.0% |
| !!! | ATATTTTTTTGTTATATTGT+TGG | - | tig0000674:83287-83306 | None:intergenic | 10.0% |
| !!! | AAATTGTTTAAAAGTATAAT+TGG | + | tig0000674:83360-83379 | Msa1335790:intron | 10.0% |
| !!! | AATTGTTTAAAAGTATAATT+GGG | + | tig0000674:83361-83380 | Msa1335790:intron | 10.0% |
| !!! | GATATAGATATATATATTTT+TGG | + | tig0000674:83633-83652 | Msa1335790:intron | 10.0% |
| !! | CAATAAAAAATAACATTTAA+TGG | - | tig0000674:83862-83881 | None:intergenic | 10.0% |
| !!! | TGATTTTTTATTTTATGAAA+TGG | + | tig0000674:84076-84095 | Msa1335790:intron | 10.0% |
| !!! | AAAAAAAATAGAAATTTGTT+CGG | - | tig0000674:84736-84755 | None:intergenic | 10.0% |
| !! | ACTAATTAATACTATTAATT+TGG | - | tig0000674:84901-84920 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTACATAAAATT+TGG | - | tig0000674:85187-85206 | None:intergenic | 10.0% |
| !!! | TTTTATGTAAATACAAAATT+TGG | + | tig0000674:85189-85208 | Msa1335790:intron | 10.0% |
| !! | ATGTAAAAAAAAAAAAGATT+TGG | - | tig0000674:85322-85341 | None:intergenic | 10.0% |
| !! | ATACTAAGTTTATACTAATT+AGG | + | tig0000674:82397-82416 | Msa1335790:intron | 15.0% |
| !! | TACTAAGTTTATACTAATTA+GGG | + | tig0000674:82398-82417 | Msa1335790:intron | 15.0% |
| !!! | ATTCTTTTTTCTGTATTTTT+TGG | - | tig0000674:82566-82585 | None:intergenic | 15.0% |
| !! | TAACAAAAAACAAATTATGT+TGG | + | tig0000674:84858-84877 | Msa1335790:intron | 15.0% |
| !! | TGGGTAAAAAAATTAAAATT+CGG | - | tig0000674:85106-85125 | None:intergenic | 15.0% |
| !! | ATATAATCAAATTCAAATCT+GGG | - | tig0000674:85125-85144 | None:intergenic | 15.0% |
| !! | AATTATCATTACATATAGAA+AGG | - | tig0000674:85403-85422 | None:intergenic | 15.0% |
| !! | GTTAAAATAGATCAAATAAA+TGG | - | tig0000674:85841-85860 | None:intergenic | 15.0% |
| !! | AAAAATAATTCATGAGGTAA+GGG | - | tig0000674:82351-82370 | None:intergenic | 20.0% |
| !! | AAAAAATAATTCATGAGGTA+AGG | - | tig0000674:82352-82371 | None:intergenic | 20.0% |
| !!! | TACCTCATGAATTATTTTTT+TGG | + | tig0000674:82352-82371 | Msa1335790:intron | 20.0% |
| !! | AACCAAAAAAATAATTCATG+AGG | - | tig0000674:82357-82376 | None:intergenic | 20.0% |
| !! | TAAACTTAGTATTTAAACGT+TGG | - | tig0000674:82389-82408 | None:intergenic | 20.0% |
| !!! | TTTTCTGTATTTTTTGGATT+GGG | - | tig0000674:82560-82579 | None:intergenic | 20.0% |
| !!! | TTTTTCTGTATTTTTTGGAT+TGG | - | tig0000674:82561-82580 | None:intergenic | 20.0% |
| !! | TTACCATACTATAATTTGAT+TGG | + | tig0000674:82685-82704 | Msa1335790:intron | 20.0% |
| !! | ATCAAGCTAACATAAAAAAA+GGG | - | tig0000674:82848-82867 | None:intergenic | 20.0% |
| !! | AATCAAGCTAACATAAAAAA+AGG | - | tig0000674:82849-82868 | None:intergenic | 20.0% |
| !!! | GAAATTGGTTTTGATTAAAA+AGG | + | tig0000674:82912-82931 | Msa1335790:intron | 20.0% |
| !!! | GAAAGAAAAAAAAGATTTTG+AGG | - | tig0000674:83058-83077 | None:intergenic | 20.0% |
| !! | TATATATATTAGCGAAAAGT+CGG | + | tig0000674:83099-83118 | Msa1335790:intron | 20.0% |
| !!! | TTTTCCAAGTGATAAATAAA+GGG | - | tig0000674:83809-83828 | None:intergenic | 20.0% |
| !! | ACATGATTCTTTCATATAAT+TGG | - | tig0000674:84032-84051 | None:intergenic | 20.0% |
| !!! | TTTTCCAAGAAACAAATAAA+GGG | + | tig0000674:84490-84509 | Msa1335790:intron | 20.0% |
| !! | AAAATAGACCTTCATAAAAA+AGG | + | tig0000674:84547-84566 | Msa1335790:intron | 20.0% |
| !! | AAATAGACCTTCATAAAAAA+GGG | + | tig0000674:84548-84567 | Msa1335790:intron | 20.0% |
| !!! | TAGATTATTATTGTTGTTGT+TGG | + | tig0000674:84653-84672 | Msa1335790:intron | 20.0% |
| !! | AAAATTGCTAGCAATAATAA+TGG | - | tig0000674:84822-84841 | None:intergenic | 20.0% |
| !! | CTAAATCTATATACTTGAAA+AGG | + | tig0000674:85046-85065 | Msa1335790:intron | 20.0% |
| !! | GATATAATCAAATTCAAATC+TGG | - | tig0000674:85126-85145 | None:intergenic | 20.0% |
| !! | GATTTGAATTTGATTATATC+CGG | + | tig0000674:85126-85145 | Msa1335790:intron | 20.0% |
| !! | TCAACTAAAAAGAGAAAATT+TGG | + | tig0000674:85220-85239 | Msa1335790:intron | 20.0% |
| !! | ACAAATAATACTTACAATGT+TGG | - | tig0000674:85595-85614 | None:intergenic | 20.0% |
| !!! | ATGTGTTATTTATTTGTTGA+AGG | + | tig0000674:85629-85648 | Msa1335790:intron | 20.0% |
| !! | ATTGTTTGAATAATGTGTTT+GGG | - | tig0000674:85916-85935 | None:intergenic | 20.0% |
| !! | ATTATAAACAAAGATGAAGA+TGG | + | tig0000674:86142-86161 | Msa1335790:CDS | 20.0% |
| ! | AAAAATTTCAAACCTACAGA+TGG | + | tig0000674:81846-81865 | Msa1335790:CDS | 25.0% |
| ! | TCAAGAACATTGATATAGTT+GGG | - | tig0000674:81921-81940 | None:intergenic | 25.0% |
| ! | TTCAAGAACATTGATATAGT+TGG | - | tig0000674:81922-81941 | None:intergenic | 25.0% |
| !!! | TTTGTCAACTATACTTTTTC+CGG | - | tig0000674:82117-82136 | None:intergenic | 25.0% |
| ! | TGTTAATCAAAGATATGTGA+AGG | - | tig0000674:82232-82251 | None:intergenic | 25.0% |
| ! | ATCTTTGATTAACAATGCTT+CGG | + | tig0000674:82238-82257 | Msa1335790:CDS | 25.0% |
| !!! | ACTAATTAGGGTTTATTTTC+TGG | + | tig0000674:82410-82429 | Msa1335790:intron | 25.0% |
| ! | TAGCCAATCAAATTATAGTA+TGG | - | tig0000674:82691-82710 | None:intergenic | 25.0% |
| !!! | TAAAGTGATTTTTTTGTGTG+TGG | + | tig0000674:82745-82764 | Msa1335790:intron | 25.0% |
| !!! | AAAGTGATTTTTTTGTGTGT+GGG | + | tig0000674:82746-82765 | Msa1335790:intron | 25.0% |
| !!! | TTGGTTTTGATTAAAAAGGA+TGG | + | tig0000674:82916-82935 | Msa1335790:intron | 25.0% |
| !! | CTTAAACAAGCTTGTTTAAA+AGG | - | tig0000674:83011-83030 | None:intergenic | 25.0% |
| !!! | AGAAAAAAAAGATTTTGAGG+TGG | - | tig0000674:83055-83074 | None:intergenic | 25.0% |
| ! | CAATAAAAAGAGTGGAAAAA+TGG | - | tig0000674:83137-83156 | None:intergenic | 25.0% |
| !! | TTTTTCCACTCTTTTTATTG+CGG | + | tig0000674:83137-83156 | Msa1335790:intron | 25.0% |
| ! | GTCATTGAAATAGATAATCA+TGG | - | tig0000674:83263-83282 | None:intergenic | 25.0% |
| !!! | TAGTTTGTTACCCTTTTTAA+GGG | + | tig0000674:83416-83435 | Msa1335790:intron | 25.0% |
| ! | TTTCCTTTATCCCTTAAAAA+GGG | - | tig0000674:83429-83448 | None:intergenic | 25.0% |
| !! | TTTTCCTTTATCCCTTAAAA+AGG | - | tig0000674:83430-83449 | None:intergenic | 25.0% |
| ! | AAATAGACCTTCATAGAAAA+GGG | - | tig0000674:83751-83770 | None:intergenic | 25.0% |
| ! | AAAATAGACCTTCATAGAAA+AGG | - | tig0000674:83752-83771 | None:intergenic | 25.0% |
| !!! | GTATTTTTGTACAAAGGAAA+AGG | - | tig0000674:84513-84532 | None:intergenic | 25.0% |
| ! | TTTCCAAGTGATAAATAAAG+GGG | - | tig0000674:83808-83827 | None:intergenic | 25.0% |
| !! | CTTTTCCAAGTGATAAATAA+AGG | - | tig0000674:83810-83829 | None:intergenic | 25.0% |
| ! | CAATGATAACAAAAATTGAC+AGG | - | tig0000674:83932-83951 | None:intergenic | 25.0% |
| !! | TTTCTTTTGATGAATCAAGT+CGG | - | tig0000674:83979-83998 | None:intergenic | 25.0% |
| !! | CTTTATTTGTTTCTTGGAAA+AGG | - | tig0000674:84491-84510 | None:intergenic | 25.0% |
| !! | CTTTTCCAAGAAACAAATAA+AGG | + | tig0000674:84489-84508 | Msa1335790:intron | 25.0% |
| ! | TTTCCAAGAAACAAATAAAG+GGG | + | tig0000674:84491-84510 | Msa1335790:intron | 25.0% |
| !!! | GTATTTTTGTACAAAGGAAA+AGG | + | tig0000674:84513-84532 | Msa1335790:intron | 25.0% |
| !! | ATTATTATTGTTGTTGTTGG+TGG | + | tig0000674:84656-84675 | Msa1335790:intron | 25.0% |
| !!! | GTTTCTTTGTGATTTTTTTG+TGG | + | tig0000674:84696-84715 | Msa1335790:intron | 25.0% |
| ! | TAACATTTGAACAAGATTAC+CGG | - | tig0000674:85148-85167 | None:intergenic | 25.0% |
| !! | TTTGGAACAAGAATGAAATT+TGG | + | tig0000674:85238-85257 | Msa1335790:intron | 25.0% |
| !! | CTTTTGCATTCTTGATTTTT+AGG | + | tig0000674:85443-85462 | Msa1335790:intron | 25.0% |
| ! | AATATATCAACAAAATCCCT+GGG | - | tig0000674:85657-85676 | None:intergenic | 25.0% |
| ! | TAATATATCAACAAAATCCC+TGG | - | tig0000674:85658-85677 | None:intergenic | 25.0% |
| ! | TTCACAAATGATCATATGTA+AGG | + | tig0000674:85688-85707 | Msa1335790:intron | 25.0% |
| !!! | TACTTTTTAAGGTGAATAAG+TGG | - | tig0000674:85809-85828 | None:intergenic | 25.0% |
| !!! | GGACTATGATTTACTTTTTA+AGG | - | tig0000674:85820-85839 | None:intergenic | 25.0% |
| ! | CATTGTTTGAATAATGTGTT+TGG | - | tig0000674:85917-85936 | None:intergenic | 25.0% |
| !! | AATTTGGATCAATATTTTCC+TGG | - | tig0000674:86026-86045 | None:intergenic | 25.0% |
| !!! | TCAAGTTGATTTCTTGAATT+TGG | - | tig0000674:86042-86061 | None:intergenic | 25.0% |
| ! | TGGAAATATCAAGATTGATT+TGG | + | tig0000674:86065-86084 | Msa1335790:intron | 25.0% |
| ! | GAAAAATCTAACAAAGAAGA+TGG | + | tig0000674:86112-86131 | Msa1335790:CDS | 25.0% |
| TATCGTGAACTTTATTGTAG+AGG | - | tig0000674:81890-81909 | None:intergenic | 30.0% | |
| TTGATACCATAAAGAATCCT+TGG | + | tig0000674:81952-81971 | Msa1335790:CDS | 30.0% | |
| TGATACCATAAAGAATCCTT+GGG | + | tig0000674:81953-81972 | Msa1335790:CDS | 30.0% | |
| ! | AAACGTTTGATTCGTACTAT+TGG | + | tig0000674:82065-82084 | Msa1335790:CDS | 30.0% |
| ! | TTGATTCGTACTATTGGAAT+TGG | + | tig0000674:82071-82090 | Msa1335790:CDS | 30.0% |
| !!! | GAAACGTTTTTTTAGACCTA+GGG | - | tig0000674:82153-82172 | None:intergenic | 30.0% |
| ! | TCAAAGTGACAATTTTTCCT+TGG | + | tig0000674:82449-82468 | Msa1335790:intron | 30.0% |
| TCATCAAGTGAGAATTTGAT+TGG | - | tig0000674:82595-82614 | None:intergenic | 30.0% | |
| AGTATGGTAACTTACAGATA+TGG | - | tig0000674:82675-82694 | None:intergenic | 30.0% | |
| AAGAGAAAAACAAATACGAC+GGG | - | tig0000674:82825-82844 | None:intergenic | 30.0% | |
| GAAGAGAAAAACAAATACGA+CGG | - | tig0000674:82826-82845 | None:intergenic | 30.0% | |
| !!! | CTAGTTTGTTACCCTTTTTA+AGG | + | tig0000674:83415-83434 | Msa1335790:intron | 30.0% |
| !! | TTACCCTTTTTAAGGGATAA+AGG | + | tig0000674:83423-83442 | Msa1335790:intron | 30.0% |
| GCTATTTGTATTGAAAGTTG+AGG | + | tig0000674:83533-83552 | Msa1335790:intron | 30.0% | |
| ! | TAACATGTTTTGCCTCTTTT+GGG | - | tig0000674:83585-83604 | None:intergenic | 30.0% |
| ! | ATAACATGTTTTGCCTCTTT+TGG | - | tig0000674:83586-83605 | None:intergenic | 30.0% |
| !!! | AAAGGGGTATTTTTGTACAA+AGG | - | tig0000674:84507-84526 | None:intergenic | 30.0% |
| ! | ATACCCCTTTATTTATCACT+TGG | + | tig0000674:83802-83821 | Msa1335790:intron | 30.0% |
| GACATTGTTGTATATCAGTT+CGG | + | tig0000674:84285-84304 | Msa1335790:intron | 30.0% | |
| ! | ATACCCCTTTATTTGTTTCT+TGG | - | tig0000674:84497-84516 | None:intergenic | 30.0% |
| !!! | AAAGGGGTATTTTTGTACAA+AGG | + | tig0000674:84507-84526 | Msa1335790:intron | 30.0% |
| TTTATCATGTTCAACTTTGC+TGG | - | tig0000674:85293-85312 | None:intergenic | 30.0% | |
| GAACCAAAATGTCAATCAAA+TGG | + | tig0000674:85498-85517 | Msa1335790:CDS | 30.0% | |
| GCATTGTTATATGAAGATGT+CGG | + | tig0000674:85765-85784 | Msa1335790:intron | 30.0% | |
| CATTGTTATATGAAGATGTC+GGG | + | tig0000674:85766-85785 | Msa1335790:intron | 30.0% | |
| ATTGTTATATGAAGATGTCG+GGG | + | tig0000674:85767-85786 | Msa1335790:intron | 30.0% | |
| TCAAGAAATCAACTTGATAG+TGG | + | tig0000674:86045-86064 | Msa1335790:intron | 30.0% | |
| ATTGAAATGATTCCAAATCC+TGG | + | tig0000674:86241-86260 | Msa1335790:CDS | 30.0% | |
| AATCTCCCAAGGATTCTTTA+TGG | - | tig0000674:81961-81980 | None:intergenic | 35.0% | |
| TAAAGAATCCTTGGGAGATT+TGG | + | tig0000674:81961-81980 | Msa1335790:CDS | 35.0% | |
| AAAGAATCCTTGGGAGATTT+GGG | + | tig0000674:81962-81981 | Msa1335790:CDS | 35.0% | |
| TTCTCACTCATATCATGGAA+AGG | + | tig0000674:81998-82017 | Msa1335790:CDS | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | - | tig0000674:82042-82061 | None:intergenic | 35.0% | |
| ACGAATCAAACGTTTACTAG+TGG | - | tig0000674:82060-82079 | None:intergenic | 35.0% | |
| TACTATTGGAATTGGTACGT+GGG | + | tig0000674:82079-82098 | Msa1335790:CDS | 35.0% | |
| AGTATAGTTGACAAAGAGAC+CGG | + | tig0000674:82122-82141 | Msa1335790:CDS | 35.0% | |
| !!! | GTTTTTTTAGACCTAGGGTT+TGG | - | tig0000674:82148-82167 | None:intergenic | 35.0% |
| !!! | GGAAACGTTTTTTTAGACCT+AGG | - | tig0000674:82154-82173 | None:intergenic | 35.0% |
| AAGTGTAACTCTTCTCAAAG+CGG | - | tig0000674:82175-82194 | None:intergenic | 35.0% | |
| AAGAGTTACACTTCTCAAGA+TGG | + | tig0000674:82182-82201 | Msa1335790:CDS | 35.0% | |
| AAGGGTGGTCACTATTTAAT+AGG | - | tig0000674:82333-82352 | None:intergenic | 35.0% | |
| AATAATTCATGAGGTAAGGG+TGG | - | tig0000674:82348-82367 | None:intergenic | 35.0% | |
| TAAATGTGTGCACAATACCA+AGG | - | tig0000674:82469-82488 | None:intergenic | 35.0% | |
| TCTGCATAGAACATAATTGC+TGG | - | tig0000674:82519-82538 | None:intergenic | 35.0% | |
| TCTCACTTGATGAATAGCAT+TGG | + | tig0000674:82602-82621 | Msa1335790:CDS | 35.0% | |
| AGAGAAAAACAAATACGACG+GGG | - | tig0000674:82824-82843 | None:intergenic | 35.0% | |
| AAGAATCATGTATCACGTTC+TGG | + | tig0000674:84041-84060 | Msa1335790:intron | 35.0% | |
| ATGAAATGGAAGAATCATGC+TGG | + | tig0000674:84090-84109 | Msa1335790:intron | 35.0% | |
| ATCAACGGTATCTAGATTGA+CGG | + | tig0000674:84139-84158 | Msa1335790:intron | 35.0% | |
| ! | TTGTATATCAGTTCGGTGAT+TGG | + | tig0000674:84292-84311 | Msa1335790:intron | 35.0% |
| TAGACCTTCATAAAAAAGGG+TGG | + | tig0000674:84551-84570 | Msa1335790:intron | 35.0% | |
| AGACCTTCATAAAAAAGGGT+GGG | + | tig0000674:84552-84571 | Msa1335790:intron | 35.0% | |
| ! | ATTATTGTTGTTGTTGGTGG+TGG | + | tig0000674:84659-84678 | Msa1335790:intron | 35.0% |
| ! | TGCTGGTCAGCTAAAAATTT+TGG | - | tig0000674:85276-85295 | None:intergenic | 35.0% |
| ! | TTTAGGACATCATTGTTTCG+AGG | + | tig0000674:85460-85479 | Msa1335790:intron | 35.0% |
| ! | CCACCATTTGATTGACATTT+TGG | - | tig0000674:85504-85523 | None:intergenic | 35.0% |
| CCAAAATGTCAATCAAATGG+TGG | + | tig0000674:85501-85520 | Msa1335790:CDS | 35.0% | |
| !! | AATCAAATGGTGGACACAAA+AGG | + | tig0000674:85511-85530 | Msa1335790:CDS | 35.0% |
| ! | TTTATTTGTTGAAGGAACCC+AGG | + | tig0000674:85637-85656 | Msa1335790:intron | 35.0% |
| ! | TTATTTGTTGAAGGAACCCA+GGG | + | tig0000674:85638-85657 | Msa1335790:intron | 35.0% |
| TACCAAGTGATATATGCACA+CGG | - | tig0000674:85737-85756 | None:intergenic | 35.0% | |
| ! | AATGCAGGAGCACAATAATA+AGG | - | tig0000674:85995-86014 | None:intergenic | 35.0% |
| ! | AGATTTTTCCTCTGTCGTAT+TGG | - | tig0000674:86101-86120 | None:intergenic | 35.0% |
| ATGAAGATGGTGATATCTCT+TGG | + | tig0000674:86155-86174 | Msa1335790:CDS | 35.0% | |
| TAAACATAGCAATGTTTGCC+AGG | - | tig0000674:86262-86281 | None:intergenic | 35.0% | |
| ACATTGATATAGTTGGGCAC+TGG | - | tig0000674:81915-81934 | None:intergenic | 40.0% | |
| GCAAGTTCTCACTCATATCA+TGG | + | tig0000674:81993-82012 | Msa1335790:CDS | 40.0% | |
| GTACTATTGGAATTGGTACG+TGG | + | tig0000674:82078-82097 | Msa1335790:CDS | 40.0% | |
| AGTTACACTTCTCAAGATGG+TGG | + | tig0000674:82185-82204 | Msa1335790:CDS | 40.0% | |
| !!! | CTGCTTTTGCGTTTTTTTGC+AGG | + | tig0000674:82493-82512 | Msa1335790:intron | 40.0% |
| ! | AGCATTGGACAAGATAAGCA+AGG | + | tig0000674:82617-82636 | Msa1335790:CDS | 40.0% |
| AGAAAATGTCAGCCCAAAAG+AGG | + | tig0000674:83570-83589 | Msa1335790:intron | 40.0% | |
| AGACCTTCATAGAAAAGGGT+GGG | - | tig0000674:83747-83766 | None:intergenic | 40.0% | |
| TAGACCTTCATAGAAAAGGG+TGG | - | tig0000674:83748-83767 | None:intergenic | 40.0% | |
| TGATCGTACTCTGCAAATCT+GGG | - | tig0000674:84123-84142 | None:intergenic | 40.0% | |
| TTGATCGTACTCTGCAAATC+TGG | - | tig0000674:84124-84143 | None:intergenic | 40.0% | |
| GATTTGCAGAGTACGATCAA+CGG | + | tig0000674:84124-84143 | Msa1335790:intron | 40.0% | |
| TTGTAATCGGTGGAAAGAGA+AGG | + | tig0000674:84205-84224 | Msa1335790:intron | 40.0% | |
| CTTGGAAAAGGCAAAACTGA+AGG | - | tig0000674:84479-84498 | None:intergenic | 40.0% | |
| !!! | AGACCCACCCTTTTTTATGA+AGG | - | tig0000674:84558-84577 | None:intergenic | 40.0% |
| !! | AGCTTTAAGTCCAAGAACCA+CGG | - | tig0000674:85568-85587 | None:intergenic | 40.0% |
| ACCAAGTGATATATGCACAC+GGG | - | tig0000674:85736-85755 | None:intergenic | 40.0% | |
| TTCCTGGAAAATGAGAATGC+AGG | - | tig0000674:86010-86029 | None:intergenic | 40.0% | |
| !! | AAAAAGTGCCAATACGACAG+AGG | + | tig0000674:86090-86109 | Msa1335790:intron | 40.0% |
| ! | TTTTGCAAGGGAACTCATAG+AGG | + | tig0000674:86186-86205 | Msa1335790:CDS | 40.0% |
| TGAAGGAAGGTTAATCGAAG+AGG | + | tig0000674:86213-86232 | Msa1335790:CDS | 40.0% | |
| TAGCAATGTTTGCCAGGATT+TGG | - | tig0000674:86256-86275 | None:intergenic | 40.0% | |
| CGAAGAAGTTCACCATCTGT+AGG | - | tig0000674:81861-81880 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+AGG | - | tig0000674:81972-81991 | None:intergenic | 45.0% | |
| ! | TTTTAGACCTAGGGTTTGGC+CGG | - | tig0000674:82144-82163 | None:intergenic | 45.0% |
| !! | ACACTTCTCAAGATGGTGGA+TGG | + | tig0000674:82189-82208 | Msa1335790:CDS | 45.0% |
| CAAGGAAAGACAGTTGTTCC+CGG | + | tig0000674:82635-82654 | Msa1335790:CDS | 45.0% | |
| CATCGCCGCAATAAAAAGAG+TGG | - | tig0000674:83145-83164 | None:intergenic | 45.0% | |
| ! | AGACCCACCCTTTTCTATGA+AGG | + | tig0000674:83741-83760 | Msa1335790:intron | 45.0% |
| AGTCGGAAACGTGAAAGAAG+AGG | - | tig0000674:83962-83981 | None:intergenic | 45.0% | |
| ! | GTACTCTGCAAATCTGGGAT+TGG | - | tig0000674:84118-84137 | None:intergenic | 45.0% |
| TAATCGGTGGAAAGAGAAGG+TGG | + | tig0000674:84208-84227 | Msa1335790:intron | 45.0% | |
| AATCGGTGGAAAGAGAAGGT+GGG | + | tig0000674:84209-84228 | Msa1335790:intron | 45.0% | |
| ACGTCGTGAGATTCAGATCA+GGG | + | tig0000674:84262-84281 | Msa1335790:intron | 45.0% | |
| !! | ATTGTTGTTGTTGGTGGTGG+TGG | + | tig0000674:84662-84681 | Msa1335790:intron | 45.0% |
| ! | TGGTGGACACAAAAGGAGAA+AGG | + | tig0000674:85518-85537 | Msa1335790:CDS | 45.0% |
| TGGACACAAAAGGAGAAAGG+TGG | + | tig0000674:85521-85540 | Msa1335790:CDS | 45.0% | |
| GGACACAAAAGGAGAAAGGT+GGG | + | tig0000674:85522-85541 | Msa1335790:CDS | 45.0% | |
| GGAGAAAGGTGGGAAATACT+TGG | + | tig0000674:85532-85551 | Msa1335790:CDS | 45.0% | |
| CCAAGTGATATATGCACACG+GGG | - | tig0000674:85735-85754 | None:intergenic | 45.0% | |
| ! | CTCCTGCATTCTCATTTTCC+AGG | + | tig0000674:86005-86024 | Msa1335790:intron | 45.0% |
| ! | TTGGCCTGAGCTTTTTGCAA+GGG | + | tig0000674:86174-86193 | Msa1335790:CDS | 45.0% |
| AGTTCCCTTGCAAAAAGCTC+AGG | - | tig0000674:86181-86200 | None:intergenic | 45.0% | |
| GAACTCATAGAGGCGAATGA+AGG | + | tig0000674:86196-86215 | Msa1335790:CDS | 45.0% | |
| TCATAGAGGCGAATGAAGGA+AGG | + | tig0000674:86200-86219 | Msa1335790:CDS | 45.0% | |
| AGGAAGGTTAATCGAAGAGG+AGG | + | tig0000674:86216-86235 | Msa1335790:CDS | 45.0% | |
| !!! | GTTTTATTTATTTATTTTTT+TGG | + | tig0000674:84919-84938 | Msa1335790:intron | 5.0% |
| ! | ACAGATATGGCGTTTTCCGC+AGG | - | tig0000674:82662-82681 | None:intergenic | 50.0% |
| CGGAAACGTGAAAGAAGAGG+TGG | - | tig0000674:83959-83978 | None:intergenic | 50.0% | |
| ATTGACGGTGACATCCCATG+AGG | + | tig0000674:84154-84173 | Msa1335790:intron | 50.0% | |
| GACGTCGTGAGATTCAGATC+AGG | + | tig0000674:84261-84280 | Msa1335790:intron | 50.0% | |
| CGTCGTGAGATTCAGATCAG+GGG | + | tig0000674:84263-84282 | Msa1335790:intron | 50.0% | |
| ! | AGTTCGGTGATTGGCAGAGA+TGG | + | tig0000674:84301-84320 | Msa1335790:intron | 50.0% |
| ! | GTTCGGTGATTGGCAGAGAT+GGG | + | tig0000674:84302-84321 | Msa1335790:intron | 50.0% |
| ACGATGTGAACCACACAGCA+AGG | + | tig0000674:84337-84356 | Msa1335790:intron | 50.0% | |
| ATGTGAACCACACAGCAAGG+AGG | + | tig0000674:84340-84359 | Msa1335790:intron | 50.0% | |
| GCAAGGAGGAACGATGAAGA+TGG | + | tig0000674:84354-84373 | Msa1335790:intron | 50.0% | |
| TACTTGGCCAGAAAAGACCG+TGG | + | tig0000674:85548-85567 | Msa1335790:CDS | 50.0% | |
| ! | CCAAGAACCACGGTCTTTTC+TGG | - | tig0000674:85558-85577 | None:intergenic | 50.0% |
| CCAGAAAAGACCGTGGTTCT+TGG | + | tig0000674:85555-85574 | Msa1335790:CDS | 50.0% | |
| CCCCGTGTGCATATATCACT+TGG | + | tig0000674:85732-85751 | Msa1335790:intron | 50.0% | |
| ! | CTTGGCCTGAGCTTTTTGCA+AGG | + | tig0000674:86173-86192 | Msa1335790:CDS | 50.0% |
| ACGTGGGAAGCTGAAGACAC+CGG | + | tig0000674:82095-82114 | Msa1335790:CDS | 55.0% | |
| AAAGAGACCGGCCAAACCCT+AGG | + | tig0000674:82134-82153 | Msa1335790:CDS | 55.0% | |
| ! | TATGGCGTTTTCCGCAGGTC+CGG | - | tig0000674:82657-82676 | None:intergenic | 55.0% |
| TTCCTTCCTCTGCGCCTCAT+GGG | - | tig0000674:84171-84190 | None:intergenic | 55.0% | |
| ATTCCTTCCTCTGCGCCTCA+TGG | - | tig0000674:84172-84191 | None:intergenic | 55.0% | |
| AGGCGCAGAGGAAGGAATCA+CGG | + | tig0000674:84174-84193 | Msa1335790:intron | 55.0% | |
| AGAGGAAGGAATCACGGCGA+CGG | + | tig0000674:84180-84199 | Msa1335790:intron | 55.0% | |
| ! | CATCGTTCCTCCTTGCTGTG+TGG | - | tig0000674:84350-84369 | None:intergenic | 55.0% |
| !! | GTTGTTGTTGGTGGTGGTGG+TGG | + | tig0000674:84665-84684 | Msa1335790:intron | 55.0% |
| GACAGTTGTTCCCGGACCTG+CGG | + | tig0000674:82643-82662 | Msa1335790:CDS | 60.0% | |
| ! | ATGGCGTTTTCCGCAGGTCC+GGG | - | tig0000674:82656-82675 | None:intergenic | 60.0% |
| TGACATCCCATGAGGCGCAG+AGG | + | tig0000674:84162-84181 | Msa1335790:intron | 60.0% | |
| ATCCCATGAGGCGCAGAGGA+AGG | + | tig0000674:84166-84185 | Msa1335790:intron | 60.0% | |
| GAGGAAGGAATCACGGCGAC+GGG | + | tig0000674:84181-84200 | Msa1335790:intron | 60.0% | |
| AGGAAGGAATCACGGCGACG+GGG | + | tig0000674:84182-84201 | Msa1335790:intron | 60.0% | |
| CACGGCGACGGGGTTGTAAT+CGG | + | tig0000674:84192-84211 | Msa1335790:intron | 60.0% | |
| ! | GAAGGTGGGTGCCGTCTACT+AGG | + | tig0000674:84223-84242 | Msa1335790:intron | 60.0% |
| TGCCGTCTACTAGGCGACAG+AGG | + | tig0000674:84232-84251 | Msa1335790:intron | 60.0% | |
| CGCCTCTGTCGCCTAGTAGA+CGG | - | tig0000674:84237-84256 | None:intergenic | 60.0% | |
| GGCGACGGGGTTGTAATCGG+TGG | + | tig0000674:84195-84214 | Msa1335790:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0000674 | gene | 81822 | 86282 | 81822 | ID=Msa1335790;Name=Msa1335790 |
| tig0000674 | mRNA | 81822 | 86282 | 81822 | ID=Msa1335790-mRNA-1;Parent=Msa1335790;Name=Msa1335790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|304 |
| tig0000674 | exon | 81822 | 82259 | 81822 | ID=Msa1335790-mRNA-1:exon:340;Parent=Msa1335790-mRNA-1 |
| tig0000674 | exon | 82515 | 82679 | 82515 | ID=Msa1335790-mRNA-1:exon:341;Parent=Msa1335790-mRNA-1 |
| tig0000674 | exon | 85465 | 85603 | 85465 | ID=Msa1335790-mRNA-1:exon:342;Parent=Msa1335790-mRNA-1 |
| tig0000674 | exon | 86110 | 86282 | 86110 | ID=Msa1335790-mRNA-1:exon:343;Parent=Msa1335790-mRNA-1 |
| tig0000674 | CDS | 81822 | 82259 | 81822 | ID=Msa1335790-mRNA-1:cds;Parent=Msa1335790-mRNA-1 |
| tig0000674 | CDS | 82515 | 82679 | 82515 | ID=Msa1335790-mRNA-1:cds;Parent=Msa1335790-mRNA-1 |
| tig0000674 | CDS | 85465 | 85603 | 85465 | ID=Msa1335790-mRNA-1:cds;Parent=Msa1335790-mRNA-1 |
| tig0000674 | CDS | 86110 | 86282 | 86110 | ID=Msa1335790-mRNA-1:cds;Parent=Msa1335790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
