AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1335830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335830 MtrunA17_Chr5g0405211 98.580 352 5 0 1 352 1 352 0.0 733
Msa1335830 MtrunA17_Chr8g0372121 63.662 355 76 9 4 351 2 310 1.21e-151 429
Msa1335830 MtrunA17_Chr4g0018391 57.595 316 94 8 6 294 5 307 5.70e-115 337
Msa1335830 MtrunA17_Chr4g0056541 56.774 310 101 5 6 294 5 302 1.96e-112 331
Msa1335830 MtrunA17_Chr5g0398971 54.785 303 114 9 6 294 5 298 4.41e-106 315
Msa1335830 MtrunA17_Chr1g0200561 47.472 356 149 9 4 341 15 350 1.85e-101 303
Msa1335830 MtrunA17_Chr2g0309331 49.669 302 126 6 3 290 5 294 1.60e-91 277
Msa1335830 MtrunA17_Chr8g0346001 44.023 343 131 7 5 297 12 343 2.69e-85 264
Msa1335830 MtrunA17_Chr4g0017921 73.418 158 41 1 1 158 1 157 1.47e-84 260
Msa1335830 MtrunA17_Chr3g0091921 55.422 166 67 3 8 169 16 178 3.33e-60 196
Msa1335830 MtrunA17_Chr2g0309891 56.209 153 63 2 8 157 6 157 1.72e-59 195
Msa1335830 MtrunA17_Chr6g0484441 54.545 154 67 1 4 157 1 151 5.75e-59 193
Msa1335830 MtrunA17_Chr4g0060931 52.047 171 75 3 8 174 17 184 6.04e-59 194
Msa1335830 MtrunA17_Chr6g0481091 55.263 152 65 2 8 157 6 156 5.13e-58 188
Msa1335830 MtrunA17_Chr3g0139331 40.000 245 129 5 5 235 8 248 4.51e-57 189
Msa1335830 MtrunA17_Chr1g0183741 50.000 176 81 4 1 174 3 173 1.33e-56 185
Msa1335830 MtrunA17_Chr3g0109821 53.205 156 69 2 8 160 6 160 2.97e-56 194
Msa1335830 MtrunA17_Chr5g0433781 52.903 155 70 2 8 160 6 159 5.28e-56 193
Msa1335830 MtrunA17_Chr7g0253011 54.375 160 62 4 8 159 17 173 1.14e-55 186
Msa1335830 MtrunA17_Chr7g0261411 53.503 157 66 4 1 155 3 154 2.55e-55 182
Msa1335830 MtrunA17_Chr2g0316971 52.469 162 62 4 8 160 23 178 4.34e-55 184
Msa1335830 MtrunA17_Chr1g0147421 44.949 198 94 5 5 192 24 216 6.22e-55 184
Msa1335830 MtrunA17_Chr6g0453451 53.205 156 66 2 8 159 20 172 1.09e-54 182
Msa1335830 MtrunA17_Chr4g0042561 50.909 165 71 3 1 158 1 162 1.11e-54 180
Msa1335830 MtrunA17_Chr8g0361731 36.458 288 152 11 2 266 8 287 2.29e-54 183
Msa1335830 MtrunA17_Chr2g0312321 52.532 158 65 4 4 157 7 158 2.74e-54 180
Msa1335830 MtrunA17_Chr5g0417791 50.318 157 69 2 8 158 3 156 3.14e-54 179
Msa1335830 MtrunA17_Chr7g0252971 46.196 184 79 4 1 168 1 180 4.11e-54 181
Msa1335830 MtrunA17_Chr3g0130731 49.133 173 71 4 8 175 7 167 1.22e-53 178
Msa1335830 MtrunA17_Chr5g0417001 45.699 186 84 5 2 175 8 188 1.93e-53 181
Msa1335830 MtrunA17_Chr6g0453131 46.857 175 78 4 10 172 17 188 2.31e-53 180
Msa1335830 MtrunA17_Chr4g0054791 46.073 191 93 4 6 187 4 193 2.56e-53 178
Msa1335830 MtrunA17_Chr7g0214071 50.299 167 75 3 5 169 12 172 3.54e-53 176
Msa1335830 MtrunA17_Chr2g0318081 44.670 197 101 3 8 202 16 206 4.49e-53 179
Msa1335830 MtrunA17_Chr2g0318101 47.126 174 74 4 3 161 10 180 4.84e-52 176
Msa1335830 MtrunA17_Chr7g0217721 48.387 186 76 3 1 169 12 194 8.35e-52 175
Msa1335830 MtrunA17_Chr6g0461661 49.398 166 75 4 8 167 18 180 2.10e-51 175
Msa1335830 MtrunA17_Chr1g0197351 44.175 206 100 6 6 197 40 244 4.27e-51 177
Msa1335830 MtrunA17_Chr5g0400461 50.943 159 65 4 8 157 6 160 7.57e-51 172
Msa1335830 MtrunA17_Chr8g0384721 51.592 157 66 3 8 158 7 159 1.04e-50 170
Msa1335830 MtrunA17_Chr4g0047841 42.487 193 81 4 8 173 15 204 1.10e-50 172
Msa1335830 MtrunA17_Chr3g0144271 45.238 210 95 6 5 211 20 212 1.82e-50 174
Msa1335830 MtrunA17_Chr3g0124761 49.405 168 75 4 8 169 7 170 2.49e-50 169
Msa1335830 MtrunA17_Chr7g0263931 49.068 161 71 3 5 157 8 165 1.10e-49 169
Msa1335830 MtrunA17_Chr8g0359921 46.875 160 78 2 8 163 14 170 8.86e-49 167
Msa1335830 MtrunA17_Chr7g0217711 55.797 138 58 1 1 138 12 146 9.83e-49 162
Msa1335830 MtrunA17_Chr3g0130101 49.669 151 71 3 10 157 9 157 1.00e-48 167
Msa1335830 MtrunA17_Chr5g0428991 52.288 153 70 2 8 158 25 176 1.82e-48 172
Msa1335830 MtrunA17_Chr3g0128111 51.678 149 69 2 11 157 45 192 2.35e-48 163
Msa1335830 MtrunA17_Chr2g0326361 49.045 157 69 3 9 157 15 168 1.04e-46 161
Msa1335830 MtrunA17_Chr3g0128151 50.658 152 72 2 8 157 22 172 1.80e-46 166
Msa1335830 MtrunA17_Chr1g0201021 52.672 131 61 1 10 140 21 150 3.24e-46 165
Msa1335830 MtrunA17_Chr2g0311651 41.500 200 97 4 8 189 21 218 3.59e-46 159
Msa1335830 MtrunA17_Chr5g0442771 43.114 167 78 3 5 157 15 178 2.16e-44 155
Msa1335830 MtrunA17_Chr3g0092671 45.860 157 82 3 10 164 7 162 6.09e-44 159
Msa1335830 MtrunA17_Chr2g0311661 39.320 206 105 4 8 195 20 223 7.65e-44 152
Msa1335830 MtrunA17_Chr4g0076731 46.053 152 78 2 7 157 53 201 8.69e-44 156
Msa1335830 MtrunA17_Chr8g0364791 46.753 154 73 3 10 158 8 157 1.44e-43 155
Msa1335830 MtrunA17_Chr4g0038751 44.311 167 80 4 1 160 4 164 1.77e-43 152
Msa1335830 MtrunA17_Chr1g0197361 45.513 156 82 3 10 163 10 164 6.10e-43 157
Msa1335830 MtrunA17_Chr8g0384201 46.104 154 74 3 10 158 8 157 1.90e-42 154
Msa1335830 MtrunA17_Chr8g0385991 43.860 171 81 5 8 168 14 179 4.18e-40 141
Msa1335830 MtrunA17_Chr3g0131911 45.181 166 74 4 8 161 14 174 1.15e-38 137
Msa1335830 MtrunA17_Chr2g0321631 45.912 159 71 7 9 155 5 160 1.42e-35 130
Msa1335830 MtrunA17_Chr4g0026141 42.945 163 79 5 4 155 1 160 1.93e-35 130
Msa1335830 MtrunA17_Chr8g0345671 44.295 149 75 5 8 153 11 154 1.83e-33 127
Msa1335830 MtrunA17_Chr3g0113001 50.877 114 49 3 52 158 4 117 2.84e-33 125
Msa1335830 MtrunA17_Chr4g0050701 39.375 160 76 4 8 157 11 159 1.35e-31 117
Msa1335830 MtrunA17_Chr8g0345691 44.295 149 75 5 8 153 12 155 2.13e-31 122
Msa1335830 MtrunA17_Chr2g0321741 36.145 166 83 4 28 193 12 154 1.73e-30 119
Msa1335830 MtrunA17_Chr8g0345711 36.905 168 88 6 4 155 8 173 6.65e-30 112
Msa1335830 MtrunA17_Chr7g0266701 36.646 161 91 4 8 157 4 164 5.03e-29 112
Msa1335830 MtrunA17_Chr3g0113031 43.382 136 61 4 74 201 3 130 1.26e-28 112
Msa1335830 MtrunA17_Chr8g0345731 41.353 133 72 4 8 135 24 155 1.40e-25 101
Msa1335830 MtrunA17_Chr7g0243371 48.780 82 40 1 64 143 17 98 1.08e-22 91.7
Msa1335830 MtrunA17_Chr8g0345721 34.524 168 73 6 4 135 26 192 3.22e-22 93.2
Msa1335830 MtrunA17_Chr8g0345701 36.735 147 72 6 6 135 5 147 5.04e-22 91.7
Msa1335830 MtrunA17_Chr8g0345741 41.667 120 65 4 19 135 2 119 2.93e-21 89.0
Msa1335830 MtrunA17_Chr8g0384351 35.802 162 79 7 8 167 10 148 9.58e-21 88.6
Msa1335830 MtrunA17_Chr3g0130321 27.439 164 94 6 8 156 7 160 1.36e-13 68.9
Msa1335830 MtrunA17_Chr7g0251661 31.298 131 85 4 5 134 7 133 1.84e-13 67.4
Msa1335830 MtrunA17_Chr7g0251651 30.469 128 84 4 8 134 18 141 5.53e-13 67.0
Msa1335830 MtrunA17_Chr7g0251671 28.058 139 95 4 1 138 3 137 6.09e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335830 AT2G18060.3 62.334 377 103 14 1 351 1 364 1.82e-151 431
Msa1335830 AT2G18060.1 62.334 377 103 14 1 351 1 364 1.82e-151 431
Msa1335830 AT4G36160.2 64.848 330 86 12 1 310 5 324 5.46e-142 407
Msa1335830 AT4G36160.1 64.848 330 86 12 1 310 1 320 6.82e-142 407
Msa1335830 AT4G36160.3 64.848 330 86 12 1 310 1 320 6.82e-142 407
Msa1335830 AT5G66300.1 59.603 302 82 9 6 291 9 286 2.71e-118 344
Msa1335830 AT1G12260.1 51.462 342 109 8 6 294 5 342 2.03e-107 320
Msa1335830 AT1G62700.1 49.575 353 126 7 6 315 5 348 2.14e-106 317
Msa1335830 AT1G62700.2 49.575 353 126 7 6 315 5 348 2.14e-106 317
Msa1335830 AT1G12260.2 54.452 292 123 4 6 294 5 289 1.67e-103 308
Msa1335830 AT1G71930.2 51.186 295 120 5 4 293 5 280 6.11e-98 293
Msa1335830 AT1G71930.1 51.186 295 120 5 4 293 5 280 6.11e-98 293
Msa1335830 AT5G62380.2 50.831 301 129 6 1 291 1 292 3.25e-96 290
Msa1335830 AT5G62380.1 50.831 301 129 6 1 291 1 292 3.25e-96 290
Msa1335830 AT2G46770.1 50.489 307 102 9 5 291 13 289 1.00e-90 276
Msa1335830 AT1G32770.1 47.231 307 125 8 5 292 13 301 2.31e-84 260
Msa1335830 AT2G18060.2 52.941 289 98 14 88 351 1 276 1.03e-82 253
Msa1335830 AT3G61910.1 48.243 313 92 9 5 292 8 275 1.13e-82 254
Msa1335830 AT4G10350.1 71.519 158 43 1 3 158 4 161 3.83e-82 253
Msa1335830 AT1G33280.1 70.253 158 46 1 1 158 1 157 3.20e-81 250
Msa1335830 AT1G79580.3 48.026 304 121 9 8 289 17 305 2.36e-80 250
Msa1335830 AT1G79580.5 48.026 304 121 9 8 289 17 305 2.36e-80 250
Msa1335830 AT1G79580.4 48.026 304 121 9 8 289 17 305 2.36e-80 250
Msa1335830 AT1G79580.2 48.026 304 121 9 8 289 17 305 2.36e-80 250
Msa1335830 AT1G79580.1 48.026 304 121 9 8 289 17 305 2.36e-80 250
Msa1335830 AT3G18400.1 56.329 158 65 2 4 160 1 155 3.13e-62 201
Msa1335830 AT3G17730.1 54.430 158 69 2 8 163 6 162 1.63e-59 192
Msa1335830 AT5G39610.1 52.695 167 72 3 8 170 20 183 7.97e-59 192
Msa1335830 AT2G24430.2 52.976 168 69 4 5 169 13 173 1.86e-58 192
Msa1335830 AT2G24430.1 52.976 168 69 4 5 169 13 173 1.86e-58 192
Msa1335830 AT5G07680.2 52.410 166 72 3 8 169 3 165 4.31e-58 191
Msa1335830 AT5G07680.1 52.410 166 72 3 8 169 17 179 6.55e-58 191
Msa1335830 AT5G61430.1 55.844 154 61 3 8 157 16 166 1.44e-57 190
Msa1335830 AT1G69490.1 51.250 160 69 2 5 158 6 162 6.86e-57 186
Msa1335830 AT1G76420.1 55.975 159 64 3 2 157 16 171 1.48e-56 187
Msa1335830 AT5G17260.1 54.248 153 66 2 8 157 6 157 1.82e-56 191
Msa1335830 AT1G65910.1 54.605 152 66 2 8 157 6 156 7.33e-56 192
Msa1335830 AT3G03200.1 54.248 153 66 2 8 157 6 157 7.38e-56 189
Msa1335830 AT3G10490.1 44.059 202 103 3 3 201 22 216 1.86e-55 181
Msa1335830 AT3G29035.1 51.875 160 70 2 8 163 24 180 1.99e-55 184
Msa1335830 AT1G56010.2 41.518 224 113 6 4 220 15 227 1.14e-54 182
Msa1335830 AT3G10490.2 41.818 220 117 4 3 219 22 233 2.04e-54 185
Msa1335830 AT1G54330.1 56.000 150 64 2 8 157 6 153 2.37e-54 181
Msa1335830 AT5G18270.1 50.877 171 73 5 8 170 21 188 9.54e-54 180
Msa1335830 AT3G10480.1 44.792 192 96 3 6 194 25 209 1.42e-53 182
Msa1335830 AT5G53950.1 51.205 166 72 3 8 167 17 179 2.62e-53 180
Msa1335830 AT3G15170.1 51.497 167 72 4 5 165 17 180 4.10e-53 178
Msa1335830 AT5G18270.2 50.292 171 74 5 8 170 21 188 4.19e-53 178
Msa1335830 AT3G12977.1 49.383 162 76 3 4 162 14 172 5.18e-53 176
Msa1335830 AT5G46590.1 53.205 156 68 3 6 157 4 158 5.58e-53 177
Msa1335830 AT4G10350.2 73.148 108 27 1 53 158 7 114 6.36e-53 177
Msa1335830 AT5G46590.2 58.088 136 55 2 6 140 4 138 2.02e-52 175
Msa1335830 AT3G04060.1 49.697 165 75 4 8 167 20 181 4.56e-52 176
Msa1335830 AT3G04070.2 48.795 166 68 4 6 157 8 170 6.47e-52 176
Msa1335830 AT3G10480.2 44.792 192 95 4 6 194 25 208 1.10e-51 177
Msa1335830 AT4G27410.2 49.693 163 76 3 8 168 14 172 1.12e-51 174
Msa1335830 AT5G63790.2 48.235 170 77 3 8 170 60 225 2.04e-51 174
Msa1335830 AT5G63790.1 48.235 170 77 3 8 170 50 215 2.38e-51 173
Msa1335830 AT4G17980.1 51.266 158 70 3 6 157 4 160 2.80e-51 171
Msa1335830 AT4G17980.2 51.266 158 70 3 6 157 4 160 4.99e-51 172
Msa1335830 AT3G15500.1 50.000 156 73 2 7 160 13 165 5.31e-51 172
Msa1335830 AT2G43000.1 49.057 159 75 3 10 165 20 175 5.68e-51 171
Msa1335830 AT4G28530.1 41.600 250 111 10 1 229 3 238 7.23e-51 173
Msa1335830 AT5G04410.1 46.927 179 84 5 6 180 7 178 7.79e-51 178
Msa1335830 AT2G33480.2 49.045 157 74 1 8 164 15 165 1.02e-50 170
Msa1335830 AT1G77450.1 51.613 155 66 3 9 158 11 161 1.84e-50 169
Msa1335830 AT5G39820.1 41.237 194 84 4 1 169 13 201 1.91e-50 172
Msa1335830 AT5G08790.1 50.625 160 68 3 8 160 7 162 4.84e-50 169
Msa1335830 AT2G33480.1 49.057 159 73 2 8 164 15 167 6.32e-50 168
Msa1335830 AT3G10500.1 50.323 155 72 3 6 157 7 159 8.23e-50 175
Msa1335830 AT1G52890.1 49.677 155 73 2 8 160 14 165 1.02e-49 169
Msa1335830 AT1G61110.1 47.619 168 70 4 8 160 16 180 1.04e-49 169
Msa1335830 AT3G10480.3 39.286 224 95 3 6 194 25 242 1.07e-49 174
Msa1335830 AT1G33060.1 53.165 158 68 4 3 157 20 174 2.91e-49 175
Msa1335830 AT1G33060.2 53.165 158 68 4 3 157 20 174 3.21e-49 175
Msa1335830 AT1G01720.1 49.682 157 69 3 8 158 7 159 6.33e-49 166
Msa1335830 AT4G27410.3 46.893 177 77 4 8 168 14 189 6.89e-49 167
Msa1335830 AT4G35580.1 50.898 167 78 3 3 167 5 169 7.27e-49 172
Msa1335830 AT4G35580.3 50.898 167 78 3 3 167 5 169 1.00e-48 172
Msa1335830 AT4G35580.2 50.898 167 78 3 3 167 5 169 1.06e-48 172
Msa1335830 AT3G15510.1 49.068 161 64 4 12 157 21 178 7.26e-48 166
Msa1335830 AT3G04070.1 53.676 136 55 3 6 136 8 140 7.40e-48 166
Msa1335830 AT1G26870.1 45.143 175 78 4 2 162 10 180 9.95e-48 167
Msa1335830 AT5G13180.1 51.250 160 64 5 8 161 14 165 3.25e-47 160
Msa1335830 AT5G24590.2 53.247 154 68 4 8 158 13 165 4.06e-47 166
Msa1335830 AT3G49530.2 50.000 158 74 5 3 157 9 164 2.73e-46 162
Msa1335830 AT3G49530.1 50.000 158 74 5 3 157 9 164 5.96e-46 163
Msa1335830 AT1G32510.1 45.679 162 77 4 6 157 4 164 2.06e-45 157
Msa1335830 AT2G27300.1 42.690 171 91 3 1 171 7 170 3.67e-45 158
Msa1335830 AT2G02450.1 45.395 152 79 2 7 157 50 198 1.66e-44 157
Msa1335830 AT2G02450.2 45.395 152 79 2 7 157 50 198 2.33e-44 157
Msa1335830 AT1G34190.1 44.371 151 79 3 10 157 18 166 1.18e-42 155
Msa1335830 AT5G22290.1 42.424 165 88 3 3 166 15 173 1.45e-42 151
Msa1335830 AT1G34180.3 45.865 133 71 1 10 142 18 149 1.58e-42 153
Msa1335830 AT1G34180.1 45.865 133 71 1 10 142 18 149 3.33e-42 154
Msa1335830 AT5G64060.1 44.737 152 77 3 10 157 8 156 5.51e-42 150
Msa1335830 AT5G09330.5 46.053 152 75 3 10 157 8 156 2.28e-41 151
Msa1335830 AT5G09330.2 46.053 152 75 3 10 157 8 156 2.28e-41 151
Msa1335830 AT5G09330.4 46.053 152 75 3 10 157 8 156 2.28e-41 151
Msa1335830 AT5G09330.3 46.053 152 75 3 10 157 8 156 2.28e-41 151
Msa1335830 AT5G09330.1 46.053 152 75 3 10 157 8 156 2.28e-41 151
Msa1335830 AT3G12910.1 44.318 176 73 6 10 165 23 193 3.90e-41 146
Msa1335830 AT1G34180.4 40.373 161 83 3 10 157 18 178 3.99e-41 150
Msa1335830 AT1G52880.1 45.509 167 70 4 12 162 21 182 5.10e-41 146
Msa1335830 AT2G17040.1 42.208 154 80 3 10 160 8 155 8.03e-41 145
Msa1335830 AT1G34180.2 43.056 144 71 2 10 142 18 161 1.02e-40 150
Msa1335830 AT5G04395.1 44.516 155 73 3 3 144 23 177 1.57e-40 141
Msa1335830 AT1G56010.1 43.478 161 77 4 66 220 8 160 3.58e-39 140
Msa1335830 AT3G44290.2 44.800 125 67 1 10 134 16 138 1.75e-38 137
Msa1335830 AT3G44290.1 44.800 125 67 1 10 134 16 138 8.24e-38 138
Msa1335830 AT5G61430.2 61.224 98 34 2 64 157 6 103 1.41e-37 136
Msa1335830 AT1G32870.2 43.506 154 80 3 8 157 10 160 1.57e-36 138
Msa1335830 AT1G32870.1 43.506 154 80 3 8 157 10 160 1.70e-36 138
Msa1335830 AT3G12977.2 52.212 113 48 3 53 162 10 119 2.44e-36 131
Msa1335830 AT1G32870.3 43.506 154 80 3 8 157 46 196 2.80e-36 138
Msa1335830 AT2G33480.3 49.515 103 50 1 64 164 8 110 1.08e-30 116
Msa1335830 AT5G22380.1 43.478 138 68 5 4 134 1 135 3.08e-27 107
Msa1335830 AT4G28530.2 43.165 139 56 4 1 120 3 137 1.18e-26 108
Msa1335830 AT4G01520.1 37.748 151 85 5 9 154 5 151 5.05e-26 106
Msa1335830 AT3G44350.2 37.821 156 85 6 11 157 8 160 5.86e-26 104
Msa1335830 AT1G02230.1 42.941 170 83 9 9 170 4 167 6.36e-26 107
Msa1335830 AT3G44350.1 38.931 131 71 4 11 135 8 135 1.02e-25 101
Msa1335830 AT4G01540.3 37.584 149 84 5 11 154 7 151 8.95e-25 104
Msa1335830 AT4G01540.1 37.584 149 84 5 11 154 7 151 1.21e-24 104
Msa1335830 AT4G01540.2 37.584 149 84 5 11 154 7 151 1.23e-24 104
Msa1335830 AT4G01540.4 37.584 149 84 5 11 154 7 151 1.28e-24 103
Msa1335830 AT5G64530.1 32.961 179 87 6 8 168 3 166 1.77e-24 99.0
Msa1335830 AT4G01550.1 37.086 151 87 4 11 157 7 153 1.94e-24 103
Msa1335830 AT3G04420.2 40.310 129 72 3 9 134 4 130 4.14e-24 100
Msa1335830 AT1G02250.1 39.645 169 89 8 9 170 4 166 1.17e-23 100
Msa1335830 AT3G04420.1 40.310 129 72 3 9 134 4 130 1.54e-23 100
Msa1335830 AT5G64530.2 39.695 131 62 5 8 136 3 118 2.09e-23 95.1
Msa1335830 AT1G01010.1 37.662 154 78 7 11 153 6 152 1.08e-22 99.0
Msa1335830 AT2G43000.2 45.833 96 49 2 73 165 2 97 6.40e-22 92.4
Msa1335830 AT3G10490.4 35.971 139 79 3 84 219 2 133 9.71e-22 95.1
Msa1335830 AT3G10490.3 35.971 139 79 3 84 219 2 133 9.71e-22 95.1
Msa1335830 AT1G02220.1 39.231 130 71 4 8 134 3 127 9.05e-20 90.1
Msa1335830 AT5G50820.1 37.857 140 62 6 8 138 17 140 3.83e-19 84.7
Msa1335830 AT3G56530.1 27.815 151 105 2 7 155 51 199 6.85e-17 80.9
Msa1335830 AT5G22290.2 41.558 77 41 1 90 166 2 74 3.38e-15 74.7
Msa1335830 AT5G14000.1 26.786 168 115 3 8 173 15 176 1.01e-14 72.8
Msa1335830 AT5G14000.2 29.771 131 85 2 8 136 15 140 1.07e-13 68.6
Msa1335830 AT3G55210.1 24.699 166 108 5 3 155 6 167 2.21e-12 67.0
Msa1335830 AT3G04430.1 34.074 135 72 6 14 135 6 136 1.29e-11 63.5

Find 84 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATAAGATGAAACTAAT+TGG 0.209676 tig0000715:-3386 Msa1335830:CDS
AGGCTTGAATCTGATGAAAA+TGG 0.260946 tig0000715:-3287 Msa1335830:CDS
AGTTCAGATTGCAGTGATAT+TGG 0.262862 tig0000715:-1152 Msa1335830:CDS
TGTTACTGCAGCAGGGTAAT+AGG 0.270150 tig0000715:-1211 Msa1335830:CDS
GAGCTACCATGGCTGGGTTT+TGG 0.285122 tig0000715:-3436 Msa1335830:CDS
CTGTTAGTTCTTGTTCCTGT+TGG 0.300454 tig0000715:+3458 None:intergenic
CAATCAGATTTCTGTCCATT+AGG 0.301864 tig0000715:+3326 None:intergenic
AATCAGATTTCTGTCCATTA+GGG 0.308366 tig0000715:+3327 None:intergenic
ATAATAATAGCAACCTGTTT+TGG 0.310133 tig0000715:+1393 None:intergenic
CTTACACATGTTATAACTTT+GGG 0.324312 tig0000715:+1550 None:intergenic
GTGCTTGGCCTCTTTACTAA+TGG 0.340736 tig0000715:+1458 None:intergenic
TAGTACTAGTACAAATAAAA+TGG 0.342897 tig0000715:+1088 None:intergenic
GGAGTGTTGTTGTCAAGTTT+TGG 0.348018 tig0000715:-1269 Msa1335830:CDS
GCTTACACATGTTATAACTT+TGG 0.349128 tig0000715:+1549 None:intergenic
TTGAGATGCATGCGTCAAAA+TGG 0.352210 tig0000715:-934 Msa1335830:three_prime_UTR
GTTCAGATTGCAGTGATATT+GGG 0.368792 tig0000715:-1151 Msa1335830:CDS
ACTCCATGATAGAAAATTAC+TGG 0.373275 tig0000715:+3909 None:intergenic
CTTGAGATTAGTTGATCAAT+TGG 0.382802 tig0000715:+1593 None:intergenic
ATTGGATCATGCATGAATAT+AGG 0.391373 tig0000715:-3307 Msa1335830:CDS
GGCATTGATGTTACTGCAGC+AGG 0.393119 tig0000715:-1219 Msa1335830:CDS
CTCTAGTAATATTTCTCATC+AGG 0.402272 tig0000715:-5440 Msa1335830:intron
GTTACTGCAGCAGGGTAATA+GGG 0.411682 tig0000715:-1210 Msa1335830:CDS
ATGATAAGATGAAACTAATT+GGG 0.420314 tig0000715:-3385 Msa1335830:CDS
CTACGAATACAGTTACTGAT+TGG 0.424836 tig0000715:-1349 Msa1335830:CDS
CATGTGTCCCACCAGGGTTT+CGG 0.436059 tig0000715:-3877 Msa1335830:CDS
CCAACTGATGAAGAACTTGT+TGG 0.437262 tig0000715:-3848 Msa1335830:CDS
CTTTGGGATAAATAGCTTTG+AGG 0.440208 tig0000715:+1566 None:intergenic
GAGAGCTCTTGATAAGTTTG+TGG 0.441089 tig0000715:-1327 Msa1335830:CDS
ACTAACAGAGCTACCATGGC+TGG 0.441475 tig0000715:-3443 Msa1335830:CDS
TCTCAATTTGCACTCATTCA+AGG 0.443582 tig0000715:+951 None:intergenic
CTTCATTGCCATTAGTAAAG+AGG 0.446048 tig0000715:-1466 Msa1335830:CDS
ATGACATTAACGACCAAAAC+AGG 0.448853 tig0000715:-1406 Msa1335830:CDS
CTCTTTACTAATGGCAATGA+AGG 0.455370 tig0000715:+1467 None:intergenic
GGTTTGTGCAGGAGGAAGGA+TGG 0.475889 tig0000715:-1742 Msa1335830:intron
ATGGAGTCATGTGTCCCACC+AGG 0.483355 tig0000715:-3884 Msa1335830:CDS
ATGAAATGGCAGAGAGATGC+AGG 0.483796 tig0000715:-3538 Msa1335830:intron
AGGTTTGAGTTGAAGAAGAG+AGG 0.484956 tig0000715:+5496 None:intergenic
TACAAAGGAAGAGCCCCTAA+TGG 0.487100 tig0000715:-3341 Msa1335830:CDS
GGTTTGAGTTGAAGAAGAGA+GGG 0.492876 tig0000715:+5497 None:intergenic
CTCAATTTGCACTCATTCAA+GGG 0.494879 tig0000715:+952 None:intergenic
CCAACAAGTTCTTCATCAGT+TGG 0.496930 tig0000715:+3848 None:intergenic
CAACAAGTTCTTCATCAGTT+GGG 0.501223 tig0000715:+3849 None:intergenic
AGAAGTAGACAAAATGATCA+AGG 0.501566 tig0000715:+5469 None:intergenic
CTAATGGACAGAAATCTGAT+TGG 0.503538 tig0000715:-3325 Msa1335830:CDS
ATTGAACCATGGGATCTTCA+AGG 0.511774 tig0000715:-3752 Msa1335830:intron
TGGCAGAGAGATGCAGGATC+GGG 0.511955 tig0000715:-3532 Msa1335830:intron
TCTTTATCGTATTGAACCAT+GGG 0.515850 tig0000715:-3762 Msa1335830:CDS
CTATGAAGAAGCTGCAAGTA+GGG 0.522407 tig0000715:-1636 Msa1335830:CDS
TGGTGGGACACATGACTCCA+TGG 0.525120 tig0000715:+3886 None:intergenic
AACAAATAATAATCCTAGCT+CGG 0.525495 tig0000715:-1246 Msa1335830:CDS
CATGAAGTTGAAACTGATCA+AGG 0.526644 tig0000715:-1290 Msa1335830:CDS
TGATGAAAATGGACCTCCAC+AGG 0.528524 tig0000715:-3276 Msa1335830:intron
ATCTTTATCGTATTGAACCA+TGG 0.534260 tig0000715:-3763 Msa1335830:CDS
ATGGCAGAGAGATGCAGGAT+CGG 0.542557 tig0000715:-3533 Msa1335830:intron
TATATAATATAAATGTTCCA+TGG 0.546655 tig0000715:-1053 Msa1335830:three_prime_UTR
AGATGAAACTAATTGGGATG+AGG 0.547240 tig0000715:-3379 Msa1335830:CDS
GTTTGTGCAGGAGGAAGGAT+GGG 0.551208 tig0000715:-1741 Msa1335830:intron
ATATGGTTTGTGCAGGAGGA+AGG 0.551944 tig0000715:-1746 Msa1335830:intron
CGATCTCTCTGATAACATCA+AGG 0.569395 tig0000715:+3786 None:intergenic
ATCAATGCCATGTCCGAGCT+AGG 0.574857 tig0000715:+1233 None:intergenic
TAATAATCCTAGCTCGGACA+TGG 0.575690 tig0000715:-1240 Msa1335830:CDS
GACAAAATGATCAAGGAGCT+AGG 0.576148 tig0000715:+5476 None:intergenic
TCTATGAAGAAGCTGCAAGT+AGG 0.576413 tig0000715:-1637 Msa1335830:CDS
AAGCACAATGTCTCTAGTAT+CGG 0.584153 tig0000715:-1441 Msa1335830:CDS
GATACTAGAGACATTGTGCT+TGG 0.594750 tig0000715:+1443 None:intergenic
TGCTTTCCAAAACCCAGCCA+TGG 0.596504 tig0000715:+3430 None:intergenic
CAATTGATCAACTAATCTCA+AGG 0.597995 tig0000715:-1592 Msa1335830:CDS
AAGAACTAACAGAGCTACCA+TGG 0.599903 tig0000715:-3447 Msa1335830:CDS
ACATATATAATATATATCCA+TGG 0.602366 tig0000715:+1036 None:intergenic
GTTGGGTGGAACCGAAACCC+TGG 0.606391 tig0000715:+3866 None:intergenic
CAAGTTCTTCATCAGTTGGG+TGG 0.606733 tig0000715:+3852 None:intergenic
ATCAGATTTCTGTCCATTAG+GGG 0.607393 tig0000715:+3328 None:intergenic
GGTTGATTAGTTACCTGTGG+AGG 0.611776 tig0000715:+3263 None:intergenic
TGGAGTCATGTGTCCCACCA+GGG 0.614596 tig0000715:-3883 Msa1335830:CDS
CTAACAGAGCTACCATGGCT+GGG 0.617618 tig0000715:-3442 Msa1335830:CDS
AAGTAGGGTCAACAATTCCA+TGG 0.625295 tig0000715:-1621 Msa1335830:CDS
TGTATACCTTGAAGATCCCA+TGG 0.629021 tig0000715:+3746 None:intergenic
TTGATCAATTGGATCCACCA+TGG 0.632099 tig0000715:+1604 None:intergenic
AATGAAGGACTTTCAAGCTG+AGG 0.644381 tig0000715:+1482 None:intergenic
GCATTGATGTTACTGCAGCA+GGG 0.654680 tig0000715:-1218 Msa1335830:CDS
GGTATGAAGAACAAAATGAG+TGG 0.665652 tig0000715:-3511 Msa1335830:CDS
GGGTGGAACCGAAACCCTGG+TGG 0.689016 tig0000715:+3869 None:intergenic
GGTGGAACCGAAACCCTGGT+GGG 0.689627 tig0000715:+3870 None:intergenic
TAGGGTCAACAATTCCATGG+TGG 0.736574 tig0000715:-1618 Msa1335830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATTAATTAATTTATCT+AGG - tig0000715:1905-1924 Msa1335830:intron 10.0%
!! ATAATTTATGAAATATAGTA+AGG - tig0000715:1936-1955 Msa1335830:intron 10.0%
!!! ATTTTTCCAATTTATTAATA+TGG - tig0000715:2272-2291 Msa1335830:intron 10.0%
!!! AAAAAATATATGATAATGTT+AGG + tig0000715:3256-3275 None:intergenic 10.0%
!! AAAAAAAGATATGAAAAATG+TGG + tig0000715:1308-1327 None:intergenic 15.0%
!!! TATAAAGTGTTTTAGTAAAA+AGG + tig0000715:2352-2371 None:intergenic 15.0%
!! AAATAATTATGTGAATGAAA+TGG - tig0000715:2917-2936 Msa1335830:intron 15.0%
!! AAACTATTAATTAAAAACCA+TGG - tig0000715:3421-3440 Msa1335830:CDS 15.0%
!! AGAAAAAAAATAAAAGCAAA+AGG - tig0000715:4050-4069 Msa1335830:intron 15.0%
!!! ATAAAAGTTTAGATCTTTTT+GGG + tig0000715:4275-4294 None:intergenic 15.0%
!!! AATAAAAGTTTAGATCTTTT+TGG + tig0000715:4276-4295 None:intergenic 15.0%
!! TCTTACTTAATTAAACTATA+TGG - tig0000715:4706-4725 Msa1335830:intron 15.0%
!! TATATAATATAAATGTTCCA+TGG - tig0000715:5416-5435 Msa1335830:intron 15.0%
!! ACATATATAATATATATCCA+TGG + tig0000715:5436-5455 None:intergenic 15.0%
!!! TATTTTTGTAAAAATATGTG+TGG - tig0000715:5475-5494 Msa1335830:five_prime_UTR 15.0%
!! AATTTACCAAAGTTATAAGA+AGG - tig0000715:1380-1399 Msa1335830:CDS 20.0%
!! ACAATAAAATACTCATTACT+AGG + tig0000715:1769-1788 None:intergenic 20.0%
!!! CAATCAAAAACTACTTTTTA+AGG + tig0000715:1855-1874 None:intergenic 20.0%
!! CATTACCATTCATTATTATT+AGG + tig0000715:1962-1981 None:intergenic 20.0%
!!! AATAATAATGAATGGTAATG+TGG - tig0000715:1962-1981 Msa1335830:intron 20.0%
!! AATTATGATTCATCAACAAA+CGG + tig0000715:1999-2018 None:intergenic 20.0%
!! AAAAAAAAAAACAAGAGTCT+TGG + tig0000715:2128-2147 None:intergenic 20.0%
!!! TTTTCCCTAACAAAATATTA+GGG - tig0000715:2778-2797 Msa1335830:intron 20.0%
!!! AAAACCCTAATATTTTGTTA+GGG + tig0000715:2785-2804 None:intergenic 20.0%
!! AATTGCATTTCAACTATATA+TGG + tig0000715:2827-2846 None:intergenic 20.0%
!!! TTGGATACTTTTTATCTTTA+TGG + tig0000715:2995-3014 None:intergenic 20.0%
!! TATGATAAGATGAAACTAAT+TGG - tig0000715:3083-3102 Msa1335830:intron 20.0%
!! ATGATAAGATGAAACTAATT+GGG - tig0000715:3084-3103 Msa1335830:intron 20.0%
!! AGAAGGATATAAGTATTATA+TGG + tig0000715:3230-3249 None:intergenic 20.0%
!! GACAATACATAATATATGTA+AGG - tig0000715:3544-3563 Msa1335830:intron 20.0%
!! TATAATCTAAATGTTCAACA+AGG - tig0000715:3788-3807 Msa1335830:CDS 20.0%
!! AAAATTATGCAAAAGCAAAA+GGG - tig0000715:4007-4026 Msa1335830:intron 20.0%
!!! TTCTTTTGTTGATATGTATT+AGG + tig0000715:4135-4154 None:intergenic 20.0%
!! TTAATTGTATGTGTTAATGA+CGG + tig0000715:4172-4191 None:intergenic 20.0%
!!! CATAATTTTATACATCGTTA+TGG - tig0000715:4435-4454 Msa1335830:intron 20.0%
!! TCTAATGTCAATAAAATGAT+CGG + tig0000715:4611-4630 None:intergenic 20.0%
!!! ATCATTTTATTGACATTAGA+CGG - tig0000715:4611-4630 Msa1335830:intron 20.0%
!! TTAATTAAGTAAGAAACTTG+AGG + tig0000715:4700-4719 None:intergenic 20.0%
!! TAGTACTAGTACAAATAAAA+TGG + tig0000715:5384-5403 None:intergenic 20.0%
! AATTACTACAATTCTGTGTT+GGG + tig0000715:1186-1205 None:intergenic 25.0%
! AAATTACTACAATTCTGTGT+TGG + tig0000715:1187-1206 None:intergenic 25.0%
!! GTTTGTTTCTTACATGTTAT+AGG + tig0000715:1210-1229 None:intergenic 25.0%
! TAGTTTACAAAAGACTTGTA+TGG + tig0000715:1232-1251 None:intergenic 25.0%
!!! TGTTTTTGCTACTACTTTTA+TGG + tig0000715:1454-1473 None:intergenic 25.0%
! ATTTATCTCAAAATCCGTTA+AGG - tig0000715:1473-1492 Msa1335830:CDS 25.0%
!! TTTTATTGGATGAAAAGCAA+AGG + tig0000715:1653-1672 None:intergenic 25.0%
! ATTACTAGGTTAATAAGGAT+GGG + tig0000715:1755-1774 None:intergenic 25.0%
! TACTCATTACTAGGTTAATA+AGG + tig0000715:1760-1779 None:intergenic 25.0%
!! GTTTTATACATGTCATTAAC+TGG - tig0000715:1874-1893 Msa1335830:intron 25.0%
! TAAGGCCTAATAATAATGAA+TGG - tig0000715:1954-1973 Msa1335830:intron 25.0%
! ATTATGATTCATCAACAAAC+GGG + tig0000715:1998-2017 None:intergenic 25.0%
! AAATGATTATGATGAGAGTT+TGG + tig0000715:2164-2183 None:intergenic 25.0%
! CACTCACCATATTAATAAAT+TGG + tig0000715:2281-2300 None:intergenic 25.0%
! TGTTATCAGAGATAATCATA+AGG + tig0000715:2322-2341 None:intergenic 25.0%
! TGTTTGAATTATAACCAAAC+AGG + tig0000715:2471-2490 None:intergenic 25.0%
!! CTTTTCCCTAACAAAATATT+AGG - tig0000715:2777-2796 Msa1335830:intron 25.0%
!! CAAAACCCTAATATTTTGTT+AGG + tig0000715:2786-2805 None:intergenic 25.0%
! AAATGAATACAGATCTATCA+TGG + tig0000715:2875-2894 None:intergenic 25.0%
!!! AAAGATAAAAAGTATCCAAC+AGG - tig0000715:2996-3015 Msa1335830:intron 25.0%
!! ATGATAATGTTAGGAATAGA+AGG + tig0000715:3247-3266 None:intergenic 25.0%
! ACTTATCTATGAAATGTCAA+AGG - tig0000715:3333-3352 Msa1335830:CDS 25.0%
! TTTGATCTTATAATCTCAAG+CGG - tig0000715:3374-3393 Msa1335830:CDS 25.0%
! TAATTAGTAGTTACATACCA+TGG + tig0000715:3441-3460 None:intergenic 25.0%
!!! GTGAACTACTCTTTTTTTTA+TGG + tig0000715:3588-3607 None:intergenic 25.0%
! TTTATGTAGTTATTACTGTC+TGG - tig0000715:3667-3686 Msa1335830:intron 25.0%
! GTTGAACATTTAGATTATAG+TGG + tig0000715:3787-3806 None:intergenic 25.0%
!!! GTTTACATTTTGATTGTCAA+AGG - tig0000715:3916-3935 Msa1335830:intron 25.0%
! GAAAATTATGCAAAAGCAAA+AGG - tig0000715:4006-4025 Msa1335830:intron 25.0%
! AATCTCAACCAATAAAAAGA+TGG - tig0000715:4494-4513 Msa1335830:intron 25.0%
!!! CAATAGTACTTTTTGTACTT+TGG + tig0000715:4791-4810 None:intergenic 25.0%
!!! AGTACAAAAAGTACTATTGA+AGG - tig0000715:4792-4811 Msa1335830:intron 25.0%
!!! AAAAAGTACTATTGAAGGAT+GGG - tig0000715:4797-4816 Msa1335830:intron 25.0%
! CTTACACATGTTATAACTTT+GGG + tig0000715:4922-4941 None:intergenic 25.0%
!! ATAATAATAGCAACCTGTTT+TGG + tig0000715:5079-5098 None:intergenic 25.0%
! AACAAATAATAATCCTAGCT+CGG - tig0000715:5223-5242 Msa1335830:intron 25.0%
AGAAGTAGACAAAATGATCA+AGG + tig0000715:1003-1022 None:intergenic 30.0%
CTCTAGTAATATTTCTCATC+AGG - tig0000715:1029-1048 Msa1335830:three_prime_UTR 30.0%
CAGAAGAACATATATCTCAA+TGG + tig0000715:1107-1126 None:intergenic 30.0%
CAGTCTCTGAATATAGTATT+AGG - tig0000715:1414-1433 Msa1335830:CDS 30.0%
! AAAGAGAGGAAACGTTTTAT+TGG + tig0000715:1667-1686 None:intergenic 30.0%
GAAAGAGAGAAAAAAGTGAA+GGG + tig0000715:1694-1713 None:intergenic 30.0%
TGACGTAATCATAGTAAAAC+GGG + tig0000715:1730-1749 None:intergenic 30.0%
GTGACGTAATCATAGTAAAA+CGG + tig0000715:1731-1750 None:intergenic 30.0%
CATTACTAGGTTAATAAGGA+TGG + tig0000715:1756-1775 None:intergenic 30.0%
! TAATGAATGGTAATGTGGAA+TGG - tig0000715:1967-1986 Msa1335830:intron 30.0%
! AATGAATGGTAATGTGGAAT+GGG - tig0000715:1968-1987 Msa1335830:intron 30.0%
TTATGATTCATCAACAAACG+GGG + tig0000715:1997-2016 None:intergenic 30.0%
ATAAGAAACGGACATGTATA+GGG + tig0000715:2064-2083 None:intergenic 30.0%
TATAAGAAACGGACATGTAT+AGG + tig0000715:2065-2084 None:intergenic 30.0%
! AAGCAAGGGTATATAAGAAA+CGG + tig0000715:2076-2095 None:intergenic 30.0%
!!! ATGAGAGTTTGGTTTTGATA+AGG + tig0000715:2153-2172 None:intergenic 30.0%
ATAATCATAAGGTCATTTGG+TGG + tig0000715:2311-2330 None:intergenic 30.0%
GAGATAATCATAAGGTCATT+TGG + tig0000715:2314-2333 None:intergenic 30.0%
ACTCCATGATAGAAAATTAC+TGG + tig0000715:2563-2582 None:intergenic 30.0%
ATCTTTATCGTATTGAACCA+TGG - tig0000715:2706-2725 Msa1335830:intron 30.0%
TCTTTATCGTATTGAACCAT+GGG - tig0000715:2707-2726 Msa1335830:intron 30.0%
! ATTTTGTTAGGGAAAAGAGT+GGG + tig0000715:2774-2793 None:intergenic 30.0%
! TATTTTGTTAGGGAAAAGAG+TGG + tig0000715:2775-2794 None:intergenic 30.0%
!!! AAGACTCTAGTTTTCTACAA+AGG - tig0000715:3113-3132 Msa1335830:intron 30.0%
AATCAGATTTCTGTCCATTA+GGG + tig0000715:3145-3164 None:intergenic 30.0%
ATTGGATCATGCATGAATAT+AGG - tig0000715:3162-3181 Msa1335830:intron 30.0%
!!! ACTACTCTTTTTTTTATGGC+CGG + tig0000715:3584-3603 None:intergenic 30.0%
ACATAAAGATCAAACTAGCA+TGG + tig0000715:3654-3673 None:intergenic 30.0%
CATTTAGATTATAGTGGTCT+AGG + tig0000715:3781-3800 None:intergenic 30.0%
! CAAAAGTGTGTAAGCATAAA+AGG + tig0000715:3897-3916 None:intergenic 30.0%
! TGCATAATTTTCCATCAGTT+TGG + tig0000715:3998-4017 None:intergenic 30.0%
! GTTGCTTTATATTGCAAAAG+AGG + tig0000715:4091-4110 None:intergenic 30.0%
!! ATGCACTGATTGTATGTTTA+TGG + tig0000715:4582-4601 None:intergenic 30.0%
! TTAAACTATATGGTTTGTGC+AGG - tig0000715:4716-4735 Msa1335830:intron 30.0%
!! CAAAAAGTACTATTGAAGGA+TGG - tig0000715:4796-4815 Msa1335830:intron 30.0%
! CTTGAGATTAGTTGATCAAT+TGG + tig0000715:4879-4898 None:intergenic 30.0%
CAATTGATCAACTAATCTCA+AGG - tig0000715:4877-4896 Msa1335830:intron 30.0%
GCTTACACATGTTATAACTT+TGG + tig0000715:4923-4942 None:intergenic 30.0%
TCTGAACTTGCATTCAAAAA+TGG + tig0000715:5305-5324 None:intergenic 30.0%
TCTGTGTTGGGTGAATTAAT+TGG + tig0000715:1174-1193 None:intergenic 35.0%
! AACTGACTCATTCTCCTTAA+CGG + tig0000715:1490-1509 None:intergenic 35.0%
GAGATGTGACATGAAAATTC+TGG - tig0000715:1510-1529 Msa1335830:CDS 35.0%
TTCTTCTCATTGCAGAAACT+GGG + tig0000715:1565-1584 None:intergenic 35.0%
AGATGAAGACATTACAGTCT+TGG + tig0000715:1588-1607 None:intergenic 35.0%
GAAAGGATGAGAAAAAGTAG+AGG + tig0000715:1627-1646 None:intergenic 35.0%
ATGAAAAGCAAAGGAAGGAA+AGG + tig0000715:1644-1663 None:intergenic 35.0%
ATTGGATGAAAAGCAAAGGA+AGG + tig0000715:1649-1668 None:intergenic 35.0%
GGAAAGAGAGAAAAAAGTGA+AGG + tig0000715:1695-1714 None:intergenic 35.0%
ATGCTTAGGTTTCTGACTTA+AGG + tig0000715:1792-1811 None:intergenic 35.0%
AAACAAGAGAATGCATGCTT+AGG + tig0000715:1806-1825 None:intergenic 35.0%
! ATGAATGGTAATGTGGAATG+GGG - tig0000715:1969-1988 Msa1335830:intron 35.0%
TGTTGTCTTGTGTTAGTGAA+TGG + tig0000715:2029-2048 None:intergenic 35.0%
AAAACAAGAGTCTTGGCATA+GGG + tig0000715:2121-2140 None:intergenic 35.0%
AAAAACAAGAGTCTTGGCAT+AGG + tig0000715:2122-2141 None:intergenic 35.0%
AAAGTCATCAAAAGTGAGTG+TGG - tig0000715:2499-2518 Msa1335830:intron 35.0%
! GCACCAGTAATTTTCTATCA+TGG - tig0000715:2557-2576 Msa1335830:intron 35.0%
! ATTTTCTATCATGGAGTCCA+TGG - tig0000715:2566-2585 Msa1335830:intron 35.0%
CAACAAGTTCTTCATCAGTT+GGG + tig0000715:2623-2642 None:intergenic 35.0%
GGTATGAAGAACAAAATGAG+TGG - tig0000715:2958-2977 Msa1335830:intron 35.0%
AGATGAAACTAATTGGGATG+AGG - tig0000715:3090-3109 Msa1335830:intron 35.0%
ATCAGATTTCTGTCCATTAG+GGG + tig0000715:3144-3163 None:intergenic 35.0%
CAATCAGATTTCTGTCCATT+AGG + tig0000715:3146-3165 None:intergenic 35.0%
! CTAATGGACAGAAATCTGAT+TGG - tig0000715:3144-3163 Msa1335830:intron 35.0%
AGGCTTGAATCTGATGAAAA+TGG - tig0000715:3182-3201 Msa1335830:intron 35.0%
! TATGGTTGATTAGTTACCTG+TGG + tig0000715:3212-3231 None:intergenic 35.0%
AGATCAAACTCTTACCATTC+AGG + tig0000715:3362-3381 None:intergenic 35.0%
!!! CTACTCTTTTTTTTATGGCC+GGG + tig0000715:3583-3602 None:intergenic 35.0%
GTGTGTAAGCATAAAAGGAA+GGG + tig0000715:3892-3911 None:intergenic 35.0%
AGTGTGTAAGCATAAAAGGA+AGG + tig0000715:3893-3912 None:intergenic 35.0%
GCCTCATAGTTACAGATAAA+CGG - tig0000715:4244-4263 Msa1335830:intron 35.0%
CCTCATAGTTACAGATAAAC+GGG - tig0000715:4245-4264 Msa1335830:intron 35.0%
! AGTCGGAAACATAGGTATTT+TGG - tig0000715:4326-4345 Msa1335830:intron 35.0%
ACCAATAAAAAGATGGTGTG+TGG - tig0000715:4501-4520 Msa1335830:intron 35.0%
! TCCACACACCATCTTTTTAT+TGG + tig0000715:4505-4524 None:intergenic 35.0%
ACATACAATCAGTGCATTTG+AGG - tig0000715:4585-4604 Msa1335830:intron 35.0%
GTAAGAAACTTGAGGAAAGA+TGG + tig0000715:4692-4711 None:intergenic 35.0%
!! CTTTGGGATAAATAGCTTTG+AGG + tig0000715:4906-4925 None:intergenic 35.0%
CTCTTTACTAATGGCAATGA+AGG + tig0000715:5005-5024 None:intergenic 35.0%
CTTCATTGCCATTAGTAAAG+AGG - tig0000715:5003-5022 Msa1335830:intron 35.0%
AAGCACAATGTCTCTAGTAT+CGG - tig0000715:5028-5047 Msa1335830:intron 35.0%
ATGACATTAACGACCAAAAC+AGG - tig0000715:5063-5082 Msa1335830:intron 35.0%
CTACGAATACAGTTACTGAT+TGG - tig0000715:5120-5139 Msa1335830:intron 35.0%
CATGAAGTTGAAACTGATCA+AGG - tig0000715:5179-5198 Msa1335830:intron 35.0%
AGTTCAGATTGCAGTGATAT+TGG - tig0000715:5317-5336 Msa1335830:intron 35.0%
GTTCAGATTGCAGTGATATT+GGG - tig0000715:5318-5337 Msa1335830:intron 35.0%
CTCAATTTGCACTCATTCAA+GGG + tig0000715:5520-5539 None:intergenic 35.0%
TCTCAATTTGCACTCATTCA+AGG + tig0000715:5521-5540 None:intergenic 35.0%
!! GGTTTGAGTTGAAGAAGAGA+GGG + tig0000715:975-994 None:intergenic 40.0%
!! AGGTTTGAGTTGAAGAAGAG+AGG + tig0000715:976-995 None:intergenic 40.0%
GACAAAATGATCAAGGAGCT+AGG + tig0000715:996-1015 None:intergenic 40.0%
CTGCAAAATCTCCTTAACCT+AGG - tig0000715:1124-1143 Msa1335830:exon 40.0%
AAACATGCATGCATGAACCT+AGG + tig0000715:1144-1163 None:intergenic 40.0%
GTGCAGCCTTCTTATAACTT+TGG + tig0000715:1389-1408 None:intergenic 40.0%
ACTATATTCAGAGACTGTGC+AGG + tig0000715:1411-1430 None:intergenic 40.0%
GTTCTTCTCATTGCAGAAAC+TGG + tig0000715:1566-1585 None:intergenic 40.0%
AAGTGAAGGGACAAAAAGAG+AGG + tig0000715:1681-1700 None:intergenic 40.0%
TTGTGTTAGTGAATGGTGGT+GGG + tig0000715:2022-2041 None:intergenic 40.0%
TGTCTTGTGTTAGTGAATGG+TGG + tig0000715:2026-2045 None:intergenic 40.0%
GAGTTTGATGAAGCAAGCAA+GGG + tig0000715:2090-2109 None:intergenic 40.0%
TGAGTTTGATGAAGCAAGCA+AGG + tig0000715:2091-2110 None:intergenic 40.0%
CACATACATCACATCCTGTT+TGG - tig0000715:2454-2473 Msa1335830:intron 40.0%
CCAACAAGTTCTTCATCAGT+TGG + tig0000715:2624-2643 None:intergenic 40.0%
CCAACTGATGAAGAACTTGT+TGG - tig0000715:2621-2640 Msa1335830:intron 40.0%
CGATCTCTCTGATAACATCA+AGG + tig0000715:2686-2705 None:intergenic 40.0%
ATTGAACCATGGGATCTTCA+AGG - tig0000715:2717-2736 Msa1335830:intron 40.0%
TGTATACCTTGAAGATCCCA+TGG + tig0000715:2726-2745 None:intergenic 40.0%
! CTGTTAGTTCTTGTTCCTGT+TGG + tig0000715:3014-3033 None:intergenic 40.0%
AAGAACTAACAGAGCTACCA+TGG - tig0000715:3022-3041 Msa1335830:intron 40.0%
AATGTCAAAGGTCACCTGAA+TGG - tig0000715:3345-3364 Msa1335830:CDS 40.0%
GATCTTATAATCTCAAGCGG+CGG - tig0000715:3377-3396 Msa1335830:CDS 40.0%
TCAACTGAGCTAAACTAACG+AGG + tig0000715:3520-3539 None:intergenic 40.0%
TAAGGTCAGAGTTCAAATCC+CGG - tig0000715:3562-3581 Msa1335830:intron 40.0%
!! TTTTCCATCAGTTTGGTGAG+AGG + tig0000715:3991-4010 None:intergenic 40.0%
CCCGTTTATCTGTAACTATG+AGG + tig0000715:4248-4267 None:intergenic 40.0%
AACTTTGCAGTCGGAAACAT+AGG - tig0000715:4318-4337 Msa1335830:intron 40.0%
ATTCTCTATGACCGTACGTA+GGG + tig0000715:4558-4577 None:intergenic 40.0%
AATTCTCTATGACCGTACGT+AGG + tig0000715:4559-4578 None:intergenic 40.0%
! AACTATATGGTTTGTGCAGG+AGG - tig0000715:4719-4738 Msa1335830:intron 40.0%
TCTATGAAGAAGCTGCAAGT+AGG - tig0000715:4832-4851 Msa1335830:intron 40.0%
CTATGAAGAAGCTGCAAGTA+GGG - tig0000715:4833-4852 Msa1335830:intron 40.0%
AAGTAGGGTCAACAATTCCA+TGG - tig0000715:4848-4867 Msa1335830:intron 40.0%
TTGATCAATTGGATCCACCA+TGG + tig0000715:4868-4887 None:intergenic 40.0%
AATGAAGGACTTTCAAGCTG+AGG + tig0000715:4990-5009 None:intergenic 40.0%
GATACTAGAGACATTGTGCT+TGG + tig0000715:5029-5048 None:intergenic 40.0%
GAGAGCTCTTGATAAGTTTG+TGG - tig0000715:5142-5161 Msa1335830:intron 40.0%
!!! GGAGTGTTGTTGTCAAGTTT+TGG - tig0000715:5200-5219 Msa1335830:intron 40.0%
TAATAATCCTAGCTCGGACA+TGG - tig0000715:5229-5248 Msa1335830:intron 40.0%
TTGAGATGCATGCGTCAAAA+TGG - tig0000715:5535-5554 Msa1335830:five_prime_UTR 40.0%
GCATGCATGAACCTAGGTTA+AGG + tig0000715:1138-1157 None:intergenic 45.0%
CTTGTGTTAGTGAATGGTGG+TGG + tig0000715:2023-2042 None:intergenic 45.0%
AAGAGTCTTGGCATAGGGTA+GGG + tig0000715:2116-2135 None:intergenic 45.0%
GTCATCAAAAGTGAGTGTGG+TGG - tig0000715:2502-2521 Msa1335830:intron 45.0%
ATCAAAAGTGAGTGTGGTGG+TGG - tig0000715:2505-2524 Msa1335830:intron 45.0%
TCAAAAGTGAGTGTGGTGGT+GGG - tig0000715:2506-2525 Msa1335830:intron 45.0%
!! AGTGTGGTGGTGGGTATTAA+TGG - tig0000715:2515-2534 Msa1335830:intron 45.0%
CAAGTTCTTCATCAGTTGGG+TGG + tig0000715:2620-2639 None:intergenic 45.0%
ATGAAATGGCAGAGAGATGC+AGG - tig0000715:2931-2950 Msa1335830:intron 45.0%
TACAAAGGAAGAGCCCCTAA+TGG - tig0000715:3128-3147 Msa1335830:intron 45.0%
TGATGAAAATGGACCTCCAC+AGG - tig0000715:3193-3212 Msa1335830:intron 45.0%
! GGTTGATTAGTTACCTGTGG+AGG + tig0000715:3209-3228 None:intergenic 45.0%
! GTTTGGTGAGAGGTAGTAGT+AGG + tig0000715:3981-4000 None:intergenic 45.0%
ACTACCTCTCACCAAACTGA+TGG - tig0000715:3984-4003 Msa1335830:intron 45.0%
AACTCCAGCAACTTTGCAGT+CGG - tig0000715:4309-4328 Msa1335830:intron 45.0%
TGACCTAGATTCCCTACGTA+CGG - tig0000715:4544-4563 Msa1335830:intron 45.0%
! ATATGGTTTGTGCAGGAGGA+AGG - tig0000715:4723-4742 Msa1335830:intron 45.0%
TAGGGTCAACAATTCCATGG+TGG - tig0000715:4851-4870 Msa1335830:intron 45.0%
GTGCTTGGCCTCTTTACTAA+TGG + tig0000715:5014-5033 None:intergenic 45.0%
! GCATTGATGTTACTGCAGCA+GGG - tig0000715:5251-5270 Msa1335830:intron 45.0%
TGTTACTGCAGCAGGGTAAT+AGG - tig0000715:5258-5277 Msa1335830:intron 45.0%
GTTACTGCAGCAGGGTAATA+GGG - tig0000715:5259-5278 Msa1335830:intron 45.0%
! TAAAACGGGCACGCGTTTTG+TGG + tig0000715:1716-1735 None:intergenic 50.0%
CAAGAGTCTTGGCATAGGGT+AGG + tig0000715:2117-2136 None:intergenic 50.0%
!! GTGGTGGTGGGTATTAATGG+TGG - tig0000715:2518-2537 Msa1335830:intron 50.0%
!! GTGGTGGGTATTAATGGTGG+TGG - tig0000715:2521-2540 Msa1335830:intron 50.0%
ATGGCAGAGAGATGCAGGAT+CGG - tig0000715:2936-2955 Msa1335830:intron 50.0%
ACTAACAGAGCTACCATGGC+TGG - tig0000715:3026-3045 Msa1335830:intron 50.0%
CTAACAGAGCTACCATGGCT+GGG - tig0000715:3027-3046 Msa1335830:intron 50.0%
TGCTTTCCAAAACCCAGCCA+TGG + tig0000715:3042-3061 None:intergenic 50.0%
!!! GCTGGGTTTTGGAAAGCAAC+AGG - tig0000715:3044-3063 Msa1335830:intron 50.0%
GTTTCCGACTGCAAAGTTGC+TGG + tig0000715:4316-4335 None:intergenic 50.0%
TGACCGTACGTAGGGAATCT+AGG + tig0000715:4550-4569 None:intergenic 50.0%
GTTTGTGCAGGAGGAAGGAT+GGG - tig0000715:4728-4747 Msa1335830:intron 50.0%
ATCAATGCCATGTCCGAGCT+AGG + tig0000715:5239-5258 None:intergenic 50.0%
!! GGCATTGATGTTACTGCAGC+AGG - tig0000715:5250-5269 Msa1335830:intron 50.0%
TGGTGGGACACATGACTCCA+TGG + tig0000715:2586-2605 None:intergenic 55.0%
ATGGAGTCATGTGTCCCACC+AGG - tig0000715:2585-2604 Msa1335830:intron 55.0%
TGGAGTCATGTGTCCCACCA+GGG - tig0000715:2586-2605 Msa1335830:intron 55.0%
CATGTGTCCCACCAGGGTTT+CGG - tig0000715:2592-2611 Msa1335830:intron 55.0%
TGGCAGAGAGATGCAGGATC+GGG - tig0000715:2937-2956 Msa1335830:intron 55.0%
! GAGCTACCATGGCTGGGTTT+TGG - tig0000715:3033-3052 Msa1335830:intron 55.0%
GGTTTGTGCAGGAGGAAGGA+TGG - tig0000715:4727-4746 Msa1335830:intron 55.0%
GGTGGAACCGAAACCCTGGT+GGG + tig0000715:2602-2621 None:intergenic 60.0%
GTTGGGTGGAACCGAAACCC+TGG + tig0000715:2606-2625 None:intergenic 60.0%
GGGTGGAACCGAAACCCTGG+TGG + tig0000715:2603-2622 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0000715 gene 933 5558 933 ID=Msa1335830;Name=Msa1335830
tig0000715 mRNA 933 5558 933 ID=Msa1335830-mRNA-1;Parent=Msa1335830;Name=Msa1335830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=136|1|0.75|1|0.66|0.5|4|197|352
tig0000715 exon 933 1753 933 ID=Msa1335830-mRNA-1:exon:420;Parent=Msa1335830-mRNA-1
tig0000715 exon 3277 3548 3277 ID=Msa1335830-mRNA-1:exon:419;Parent=Msa1335830-mRNA-1
tig0000715 exon 3753 3933 3753 ID=Msa1335830-mRNA-1:exon:418;Parent=Msa1335830-mRNA-1
tig0000715 exon 5441 5558 5441 ID=Msa1335830-mRNA-1:exon:417;Parent=Msa1335830-mRNA-1
tig0000715 five_prime_UTR 5441 5558 5441 ID=Msa1335830-mRNA-1:five_prime_utr;Parent=Msa1335830-mRNA-1
tig0000715 five_prime_UTR 3916 3933 3916 ID=Msa1335830-mRNA-1:five_prime_utr;Parent=Msa1335830-mRNA-1
tig0000715 CDS 3753 3915 3753 ID=Msa1335830-mRNA-1:cds;Parent=Msa1335830-mRNA-1
tig0000715 CDS 3277 3548 3277 ID=Msa1335830-mRNA-1:cds;Parent=Msa1335830-mRNA-1
tig0000715 CDS 1130 1753 1130 ID=Msa1335830-mRNA-1:cds;Parent=Msa1335830-mRNA-1
tig0000715 three_prime_UTR 933 1129 933 ID=Msa1335830-mRNA-1:three_prime_utr;Parent=Msa1335830-mRNA-1
Gene Sequence

>Msa1335830

ATGGAGTCCATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACTGATGAAGAACTTGTTGGCTATTATCTCAGAAAGAAAATTGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTTTATCGTATTGAACCATGGGATCTTCAAGAGAGATGCAGGATCGGGTATGAAGAACAAAATGAGTGGTATTTTTTCAGCCATAAAGATAAAAAGTATCCAACAGGAACAAGAACTAACAGAGCTACCATGGCTGGGTTTTGGAAAGCAACAGGAAGAGATAAAGCAGTATATGATAAGATGAAACTAATTGGGATGAGGAAGACTCTAGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAATCTGATTGGATCATGCATGAATATAGGCTTGAATCTGATGAAAATGGACCTCCACAGGAGGAAGGATGGGTAGTGTGTAGAGCATTTAAGAAAAGAACAACAAATAGCCAAAGTACAAAAAGTACTATTGAAGGATGGGACACAAGCTACTTCTATGAAGAAGCTGCAAGTAGGGTCAACAATTCCATGGTGGATCCAATTGATCAACTAATCTCAAGGCAACCTCAAAGCTATTTATCCCAAAGTTATAACATGTGTAAGCAAGAGATAGAAGCATGCATGCATGCAGAACAATTTTTGCAGCTTCCTCAGCTTGAAAGTCCTTCATTGCCATTAGTAAAGAGGCCAAGCACAATGTCTCTAGTATCGGACAATAATAACGATGACATTAACGACCAAAACAGGTTGCTATTATTATCGAACAACAACGATAATATTACTACGAATACAGTTACTGATTGGAGAGCTCTTGATAAGTTTGTGGCTTCTCAACTGAGTCATGAAGTTGAAACTGATCAAGGAGTGTTGTTGTCAAGTTTTGGAACAAATAATAATCCTAGCTCGGACATGGCATTGATGTTACTGCAGCAGGGTAATAGGGATGAAGAGAACAAGTTAAATCCATTTTTGAATGCAAGTTCAGATTGCAGTGATATTGGGATATGCGTATTTGAAAAATGA
Protein sequence

>Msa1335830

MESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTNSQSTKSTIEGWDTSYFYEEAASRVNNSMVDPIDQLISRQPQSYLSQSYNMCKQEIEACMHAEQFLQLPQLESPSLPLVKRPSTMSLVSDNNNDDINDQNRLLLLSNNNDNITTNTVTDWRALDKFVASQLSHEVETDQGVLLSSFGTNNNPSSDMALMLLQQGNRDEENKLNPFLNASSDCSDIGICVFEK*