Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336340 | QDX01717.1 | 98.218 | 449 | 4 | 1 | 1 | 449 | 1 | 445 | 0.0 | 910 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336340 | sp|Q6NQK2|NAC8_ARATH | 56.745 | 467 | 163 | 10 | 1 | 447 | 1 | 448 | 1.66e-174 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336340 | A0A6B7JFD4 | 98.218 | 449 | 4 | 1 | 1 | 449 | 1 | 445 | 0.0 | 910 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1336340 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336340 | MtrunA17_Chr5g0422431 | 96.214 | 449 | 13 | 1 | 1 | 449 | 1 | 445 | 0.0 | 892 |
| Msa1336340 | MtrunA17_Chr1g0198751 | 62.083 | 480 | 146 | 8 | 2 | 448 | 4 | 480 | 0.0 | 570 |
| Msa1336340 | MtrunA17_Chr1g0198741 | 51.205 | 332 | 111 | 8 | 114 | 444 | 8 | 289 | 9.86e-94 | 285 |
| Msa1336340 | MtrunA17_Chr7g0227071 | 53.982 | 226 | 80 | 3 | 6 | 219 | 5 | 218 | 6.65e-82 | 261 |
| Msa1336340 | MtrunA17_Chr2g0282871 | 49.801 | 251 | 116 | 4 | 34 | 274 | 27 | 277 | 5.76e-76 | 239 |
| Msa1336340 | MtrunA17_Chr4g0046431 | 58.081 | 198 | 80 | 2 | 36 | 230 | 44 | 241 | 2.37e-75 | 238 |
| Msa1336340 | MtrunA17_Chr8g0389661 | 59.162 | 191 | 68 | 3 | 36 | 218 | 27 | 215 | 1.79e-73 | 239 |
| Msa1336340 | MtrunA17_Chr8g0367761 | 60.556 | 180 | 68 | 2 | 36 | 212 | 44 | 223 | 2.54e-72 | 228 |
| Msa1336340 | MtrunA17_Chr4g0040541 | 55.330 | 197 | 83 | 2 | 32 | 223 | 19 | 215 | 1.28e-68 | 220 |
| Msa1336340 | MtrunA17_Chr2g0324961 | 55.446 | 202 | 86 | 2 | 32 | 229 | 20 | 221 | 4.25e-64 | 208 |
| Msa1336340 | MtrunA17_Chr6g0484441 | 29.609 | 179 | 108 | 7 | 58 | 233 | 5 | 168 | 2.66e-14 | 73.6 |
| Msa1336340 | MtrunA17_Chr1g0147421 | 30.978 | 184 | 104 | 10 | 58 | 234 | 27 | 194 | 1.84e-11 | 65.5 |
| Msa1336340 | MtrunA17_Chr7g0261411 | 25.436 | 287 | 179 | 11 | 58 | 334 | 10 | 271 | 8.08e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336340 | AT1G25580.1 | 56.745 | 467 | 163 | 10 | 1 | 447 | 1 | 448 | 1.69e-175 | 499 |
| Msa1336340 | AT3G01600.1 | 54.955 | 222 | 93 | 4 | 5 | 224 | 4 | 220 | 4.05e-77 | 245 |
| Msa1336340 | AT5G14490.2 | 51.200 | 250 | 107 | 6 | 5 | 250 | 4 | 242 | 2.56e-76 | 240 |
| Msa1336340 | AT5G14490.4 | 51.200 | 250 | 107 | 6 | 5 | 250 | 4 | 242 | 4.86e-76 | 241 |
| Msa1336340 | AT5G14490.1 | 51.200 | 250 | 107 | 6 | 5 | 250 | 7 | 245 | 4.98e-76 | 241 |
| Msa1336340 | AT5G14490.3 | 51.200 | 250 | 107 | 6 | 5 | 250 | 7 | 245 | 1.22e-75 | 241 |
| Msa1336340 | AT4G29230.3 | 59.375 | 192 | 67 | 3 | 36 | 218 | 28 | 217 | 2.10e-74 | 240 |
| Msa1336340 | AT4G29230.1 | 59.375 | 192 | 67 | 3 | 36 | 218 | 28 | 217 | 1.13e-73 | 240 |
| Msa1336340 | AT4G29230.2 | 59.375 | 192 | 66 | 3 | 36 | 218 | 28 | 216 | 1.88e-73 | 239 |
| Msa1336340 | AT4G28500.1 | 51.556 | 225 | 103 | 4 | 5 | 223 | 2 | 226 | 2.92e-72 | 230 |
| Msa1336340 | AT1G28470.1 | 51.598 | 219 | 97 | 3 | 14 | 223 | 25 | 243 | 2.38e-71 | 228 |
| Msa1336340 | AT5G56620.3 | 55.385 | 195 | 74 | 4 | 36 | 218 | 22 | 215 | 4.58e-68 | 223 |
| Msa1336340 | AT5G56620.2 | 55.385 | 195 | 74 | 4 | 36 | 218 | 22 | 215 | 4.62e-68 | 223 |
| Msa1336340 | AT5G56620.1 | 55.385 | 195 | 74 | 4 | 36 | 218 | 22 | 215 | 8.14e-68 | 221 |
| Msa1336340 | AT3G18400.1 | 31.176 | 170 | 94 | 8 | 58 | 221 | 5 | 157 | 1.09e-14 | 75.1 |
| Msa1336340 | AT1G01720.1 | 26.754 | 228 | 131 | 10 | 58 | 272 | 7 | 211 | 3.84e-13 | 70.1 |
| Msa1336340 | AT1G02220.1 | 31.250 | 160 | 90 | 6 | 59 | 215 | 4 | 146 | 1.73e-11 | 66.2 |
| Msa1336340 | AT3G12910.1 | 31.544 | 149 | 86 | 5 | 61 | 206 | 24 | 159 | 1.83e-11 | 65.5 |
| Msa1336340 | AT5G53950.1 | 28.837 | 215 | 125 | 10 | 58 | 262 | 17 | 213 | 4.10e-11 | 64.7 |
| Msa1336340 | AT1G33060.1 | 29.341 | 167 | 96 | 7 | 57 | 216 | 23 | 174 | 5.04e-11 | 65.5 |
| Msa1336340 | AT1G33060.2 | 29.341 | 167 | 96 | 7 | 57 | 216 | 23 | 174 | 5.24e-11 | 65.5 |
Find 114 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAGTATGCTGACAATT+TGG | 0.134743 | tig0001052:-8501 | None:intergenic |
| CTTCTTCCACAGAGCAATTA+AGG | 0.224693 | tig0001052:+9894 | Msa1336340:CDS |
| GGATCAAATTTGACACCTTT+TGG | 0.259342 | tig0001052:-9623 | None:intergenic |
| TGCTTCTTTGTTTGACAACT+TGG | 0.279960 | tig0001052:+12004 | Msa1336340:three_prime_UTR |
| TGAACCCCATTCAAGATTAC+TGG | 0.283602 | tig0001052:-10003 | None:intergenic |
| GAAAAGCTGAGAAAACTAAT+TGG | 0.286732 | tig0001052:+10076 | Msa1336340:CDS |
| CAAGATAGCTTTATAGCATT+TGG | 0.294737 | tig0001052:+11861 | Msa1336340:CDS |
| TTTGTGTTTATATAGGAATT+TGG | 0.295109 | tig0001052:+11834 | Msa1336340:intron |
| CATCTGATCAGGAGGTAATT+TGG | 0.312766 | tig0001052:+9645 | Msa1336340:CDS |
| GGCTCAGGAGTCACAGATTT+GGG | 0.319343 | tig0001052:-10264 | None:intergenic |
| CAATAGTATGCTGACAATTT+GGG | 0.324090 | tig0001052:-8500 | None:intergenic |
| CCAACAGCAGCAAGTCAAAC+TGG | 0.324794 | tig0001052:+10173 | Msa1336340:CDS |
| AGGCTCAGGAGTCACAGATT+TGG | 0.328067 | tig0001052:-10265 | None:intergenic |
| GAAGCAACAGTTAGGTTTGC+CGG | 0.355194 | tig0001052:-11987 | None:intergenic |
| GACGTCCGCTGGCACAAAAC+TGG | 0.357268 | tig0001052:+9970 | Msa1336340:CDS |
| AACAAGGTAGTAAAGTAATA+TGG | 0.369882 | tig0001052:+11888 | Msa1336340:exon |
| TCTGTTGGATTCACAACAAC+TGG | 0.369929 | tig0001052:+11508 | Msa1336340:CDS |
| AAAATACATGATCAGGATTT+GGG | 0.372286 | tig0001052:+9946 | Msa1336340:CDS |
| TCATAGTGAAAGACAGTATT+CGG | 0.382571 | tig0001052:+10290 | Msa1336340:CDS |
| ATCTTGAATGGGGTTCAAAA+AGG | 0.388213 | tig0001052:+10009 | Msa1336340:CDS |
| ACATTTGACTCTGCATTTGA+AGG | 0.393867 | tig0001052:-11695 | None:intergenic |
| GCAATTAAGGCTTATAATAC+TGG | 0.394443 | tig0001052:+9907 | Msa1336340:CDS |
| ATCATCAAGTCTCTCCTCTA+TGG | 0.401552 | tig0001052:+7684 | Msa1336340:exon |
| AGAAAGACACAGCGAGAAAG+AGG | 0.401966 | tig0001052:+7619 | Msa1336340:five_prime_UTR |
| CAAACAAAGAAGCAACAGTT+AGG | 0.403441 | tig0001052:-11995 | None:intergenic |
| ATTGTAGCTTCAATAGCTTC+AGG | 0.419674 | tig0001052:-10219 | None:intergenic |
| ATATCCTTCTTCAGATGCTC+TGG | 0.424976 | tig0001052:-11644 | None:intergenic |
| GTCACAGATTTGGGAGTAAC+CGG | 0.426136 | tig0001052:-10255 | None:intergenic |
| TCATCTTTACCATCTCTAGT+AGG | 0.429288 | tig0001052:-11575 | None:intergenic |
| CTAAGCCAGTAATCTTGAAT+GGG | 0.433717 | tig0001052:+9998 | Msa1336340:CDS |
| CAAATTTGATCCATCTGATC+AGG | 0.442832 | tig0001052:+9634 | Msa1336340:CDS |
| CAGTATTCGGATGTAGATCT+AGG | 0.447710 | tig0001052:+10303 | Msa1336340:CDS |
| CTCGTTATTGTTAAACTCTC+CGG | 0.448592 | tig0001052:+11968 | Msa1336340:three_prime_UTR |
| AGGAACAGAAGAGGATGAAA+AGG | 0.451744 | tig0001052:+10119 | Msa1336340:CDS |
| ACTAAGCCAGTAATCTTGAA+TGG | 0.454048 | tig0001052:+9997 | Msa1336340:CDS |
| ACCAAAATTAAAAGTGCATC+GGG | 0.455483 | tig0001052:+8426 | Msa1336340:CDS |
| GCAAGTCAAACTGGGTGATA+AGG | 0.457369 | tig0001052:+10182 | Msa1336340:CDS |
| AGGTTTACCTGGGGAATGGC+GGG | 0.461494 | tig0001052:-10336 | None:intergenic |
| AGGATTTGGGTGACGTCCGC+TGG | 0.463363 | tig0001052:+9959 | Msa1336340:CDS |
| AAAAGCTGAGAAAACTAATT+GGG | 0.463490 | tig0001052:+10077 | Msa1336340:CDS |
| GCCTCCTCAGATGAATTGTC+TGG | 0.464452 | tig0001052:+11298 | Msa1336340:intron |
| GGAGTTTCGACTAAGTCAAT+TGG | 0.465851 | tig0001052:+11748 | Msa1336340:CDS |
| ATTACTCTTGAAGTGAATGA+TGG | 0.470794 | tig0001052:+9731 | Msa1336340:CDS |
| TTCTTGTAACTATAAGTTGT+GGG | 0.476043 | tig0001052:+11937 | Msa1336340:three_prime_UTR |
| GAGTGGCCTGGTTTGCCAAA+AGG | 0.477697 | tig0001052:+9608 | Msa1336340:CDS |
| TTTAAGGTTTACCTGGGGAA+TGG | 0.481491 | tig0001052:-10340 | None:intergenic |
| GCTTCTTTGTTTGACAACTT+GGG | 0.482925 | tig0001052:+12005 | Msa1336340:three_prime_UTR |
| TCAAGTCTCTCCTCTATGGC+GGG | 0.485338 | tig0001052:+7688 | Msa1336340:exon |
| CATAAATAGAAAGGCTGGGT+TGG | 0.487379 | tig0001052:-11610 | None:intergenic |
| ATTGAAAATAATCCTGATGA+TGG | 0.487705 | tig0001052:+11455 | Msa1336340:CDS |
| CTTTCTATTTATGCTCAGCT+AGG | 0.488398 | tig0001052:+11620 | Msa1336340:CDS |
| TACAATCACAAAAGTGGATC+CGG | 0.490246 | tig0001052:+10236 | Msa1336340:CDS |
| CTGAGCATAAATAGAAAGGC+TGG | 0.491378 | tig0001052:-11615 | None:intergenic |
| TTTCTTGTAACTATAAGTTG+TGG | 0.492549 | tig0001052:+11936 | Msa1336340:three_prime_UTR |
| TGAAGCTACAATCACAAAAG+TGG | 0.498293 | tig0001052:+10230 | Msa1336340:CDS |
| CCTAAAACAACCTGAAAAGT+AGG | 0.498302 | tig0001052:+7652 | Msa1336340:five_prime_UTR |
| ACTCATCCTCAAAACTTGCC+AGG | 0.498733 | tig0001052:+9764 | Msa1336340:CDS |
| CTGACAATTTGGGCAAGCCT+TGG | 0.506059 | tig0001052:-8490 | None:intergenic |
| TTTCTATATGCAGACCATCA+TGG | 0.507135 | tig0001052:+8379 | Msa1336340:intron |
| CTTTCACTATGAGGAGGCTC+AGG | 0.507269 | tig0001052:-10279 | None:intergenic |
| GTTATGCATCAATATCATCT+AGG | 0.507798 | tig0001052:+10099 | Msa1336340:CDS |
| TGCATCGGGAGCATGTGATC+CGG | 0.516041 | tig0001052:+8440 | Msa1336340:CDS |
| CCAGTTTGACTTGCTGCTGT+TGG | 0.516424 | tig0001052:-10173 | None:intergenic |
| AAGGTTTACCTGGGGAATGG+CGG | 0.521012 | tig0001052:-10337 | None:intergenic |
| ATGTCAGGTGTTAAGCAAGA+TGG | 0.522325 | tig0001052:+9859 | Msa1336340:intron |
| ACTGAAAATAATGCTGATGA+TGG | 0.527963 | tig0001052:+11404 | Msa1336340:CDS |
| AACCAAAATTAAAAGTGCAT+CGG | 0.530697 | tig0001052:+8425 | Msa1336340:CDS |
| TTGCTTGCAAAATGTGATGT+TGG | 0.530997 | tig0001052:+9671 | Msa1336340:CDS |
| GTTCTGTATATGAGTAGTGC+AGG | 0.531845 | tig0001052:+10048 | Msa1336340:CDS |
| TTTGCTTGCTCTTCACAATG+AGG | 0.533963 | tig0001052:-11332 | None:intergenic |
| CAATTTGGGCAAGCCTTGGT+AGG | 0.534551 | tig0001052:-8486 | None:intergenic |
| GTAGAAACTGAACATAATGA+AGG | 0.537204 | tig0001052:+11371 | Msa1336340:CDS |
| ACTCTGCATTTGAAGGCTCA+AGG | 0.539581 | tig0001052:-11688 | None:intergenic |
| CTAGCTGAGCATAAATAGAA+AGG | 0.539748 | tig0001052:-11619 | None:intergenic |
| TAGTGAATCACAAAATCTGT+TGG | 0.540122 | tig0001052:+11493 | Msa1336340:CDS |
| TACCATCTCTAGTAGGAGAC+TGG | 0.544929 | tig0001052:-11568 | None:intergenic |
| TAATTGCTCTGTGGAAGAAG+TGG | 0.556020 | tig0001052:-9891 | None:intergenic |
| GTTGTAAGGTTGTAAAAGAG+TGG | 0.556602 | tig0001052:+9591 | Msa1336340:intron |
| CAAATTACCTCCTGATCAGA+TGG | 0.556689 | tig0001052:-9644 | None:intergenic |
| AGGACCAGAGCATCTGAAGA+AGG | 0.560183 | tig0001052:+11640 | Msa1336340:CDS |
| GAAAGACACAGCGAGAAAGA+GGG | 0.561279 | tig0001052:+7620 | Msa1336340:five_prime_UTR |
| AACTCGTCAACGAAAGGATG+AGG | 0.562435 | tig0001052:-9704 | None:intergenic |
| ATCAAGTCTCTCCTCTATGG+CGG | 0.563599 | tig0001052:+7687 | Msa1336340:exon |
| AGACACACCCGCCATTCCCC+AGG | 0.573342 | tig0001052:+10329 | Msa1336340:CDS |
| TGTAGAGAATGACACACCTT+CGG | 0.575337 | tig0001052:+11727 | Msa1336340:CDS |
| AGCCAGTCTCCTACTAGAGA+TGG | 0.577237 | tig0001052:+11566 | Msa1336340:CDS |
| ATTATGTTCAGTTTCTACCA+TGG | 0.577859 | tig0001052:-11366 | None:intergenic |
| ATAATAAACTCGTCAACGAA+AGG | 0.582156 | tig0001052:-9710 | None:intergenic |
| TCCAGACAATTCATCTGAGG+AGG | 0.583627 | tig0001052:-11299 | None:intergenic |
| CAAGTCTCTCCTCTATGGCG+GGG | 0.593225 | tig0001052:+7689 | Msa1336340:exon |
| TGTTACATACCCCGCCATAG+AGG | 0.594691 | tig0001052:-7698 | None:intergenic |
| AAGGTTGTAAAAGAGTGGCC+TGG | 0.594766 | tig0001052:+9596 | Msa1336340:intron |
| AGCAAAAGATGATCTATCCA+TGG | 0.596236 | tig0001052:+11349 | Msa1336340:CDS |
| GTGATCCGGAAAATGTTACA+TGG | 0.597855 | tig0001052:+8454 | Msa1336340:CDS |
| ATGCAGACCATCATGGCTAG+TGG | 0.599353 | tig0001052:+8386 | Msa1336340:intron |
| CAACAGCAGCAAGTCAAACT+GGG | 0.602243 | tig0001052:+10174 | Msa1336340:CDS |
| GAATACTGTCTTTCACTATG+AGG | 0.607271 | tig0001052:-10288 | None:intergenic |
| TATATGAGTAGTGCAGGAGG+AGG | 0.609676 | tig0001052:+10054 | Msa1336340:CDS |
| AGAAATCTGCATCTCAGATG+AGG | 0.615799 | tig0001052:-11918 | None:intergenic |
| TAGAAACTGAACATAATGAA+GGG | 0.620128 | tig0001052:+11372 | Msa1336340:CDS |
| TCATCCAGACAATTCATCTG+AGG | 0.620597 | tig0001052:-11302 | None:intergenic |
| TGAGCATAAATAGAAAGGCT+GGG | 0.624006 | tig0001052:-11614 | None:intergenic |
| TACTGTCTTTCACTATGAGG+AGG | 0.625210 | tig0001052:-10285 | None:intergenic |
| ACAGAAGAGGATGAAAAGGA+TGG | 0.629598 | tig0001052:+10123 | Msa1336340:CDS |
| ATTTGATCCATCTGATCAGG+AGG | 0.636045 | tig0001052:+9637 | Msa1336340:CDS |
| AATTGCTCTGTGGAAGAAGT+GGG | 0.639626 | tig0001052:-9890 | None:intergenic |
| ATATCATCTAGGAACAGAAG+AGG | 0.646141 | tig0001052:+10110 | Msa1336340:CDS |
| ATGGAAAAGCAATCCTACCA+AGG | 0.655385 | tig0001052:+8473 | Msa1336340:CDS |
| CTGTATATGAGTAGTGCAGG+AGG | 0.660155 | tig0001052:+10051 | Msa1336340:CDS |
| AGGCTTATAATACTGGCACT+CGG | 0.668317 | tig0001052:+9914 | Msa1336340:CDS |
| TATAAGCCTTAATTGCTCTG+TGG | 0.669172 | tig0001052:-9900 | None:intergenic |
| TAAGCCAGTAATCTTGAATG+GGG | 0.669245 | tig0001052:+9999 | Msa1336340:CDS |
| TGACTTAGTCGAAACTCCGA+AGG | 0.670660 | tig0001052:-11743 | None:intergenic |
| TATAGCATTTGGTTACAACA+AGG | 0.688806 | tig0001052:+11872 | Msa1336340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTATTTTTTTTTT+TGG | + | tig0001052:7946-7965 | Msa1336340:intron | 0.0% |
| !! | TTAAAAACAAAAATCATTGT+TGG | + | tig0001052:7587-7606 | Msa1336340:five_prime_UTR | 15.0% |
| !!! | TTTTTCTTGATGATTTTTTA+GGG | + | tig0001052:8567-8586 | Msa1336340:intron | 15.0% |
| !! | AATTGTTCAATATTTGTAAA+GGG | - | tig0001052:9073-9092 | None:intergenic | 15.0% |
| !! | AAATTGTTCAATATTTGTAA+AGG | - | tig0001052:9074-9093 | None:intergenic | 15.0% |
| !! | ATTGTTTATAACTATCAATA+TGG | - | tig0001052:9550-9569 | None:intergenic | 15.0% |
| !!! | ACATTTTTGTTTATTAATCA+AGG | + | tig0001052:11119-11138 | Msa1336340:intron | 15.0% |
| !!! | ATTTGATAATGAAACATAGT+AGG | - | tig0001052:7731-7750 | None:intergenic | 20.0% |
| !!! | TTGTTTTAACTTCATGAATT+TGG | + | tig0001052:8039-8058 | Msa1336340:intron | 20.0% |
| !! | ACATTTGGATAAAAACTAAA+TGG | + | tig0001052:8062-8081 | Msa1336340:intron | 20.0% |
| !! | CATTTGGATAAAAACTAAAT+GGG | + | tig0001052:8063-8082 | Msa1336340:intron | 20.0% |
| !!! | ATGTGTTTTCTATGTTTAAA+TGG | + | tig0001052:8115-8134 | Msa1336340:intron | 20.0% |
| !!! | CTTTTTCTTGATGATTTTTT+AGG | + | tig0001052:8566-8585 | Msa1336340:intron | 20.0% |
| !! | AACTATCAATATGGTATATA+TGG | - | tig0001052:9541-9560 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTTTCTGTTGTA+AGG | + | tig0001052:9577-9596 | Msa1336340:intron | 20.0% |
| !!! | AACAAGAAAAAATGGTTTTA+AGG | - | tig0001052:10359-10378 | None:intergenic | 20.0% |
| !!! | TCTTTGATAACAAGAAAAAA+TGG | - | tig0001052:10367-10386 | None:intergenic | 20.0% |
| !! | ATTAAAATCTAAATACTCAG+TGG | - | tig0001052:10585-10604 | None:intergenic | 20.0% |
| !!! | TCATTTAAGATAGGTTTTTA+TGG | + | tig0001052:10621-10640 | Msa1336340:intron | 20.0% |
| !!! | AAGGTTTTGTTTTTTTTTGA+AGG | + | tig0001052:10669-10688 | Msa1336340:intron | 20.0% |
| !! | TAAAAAATCATTGAGAACAT+GGG | - | tig0001052:11778-11797 | None:intergenic | 20.0% |
| !! | ATAAAAAATCATTGAGAACA+TGG | - | tig0001052:11779-11798 | None:intergenic | 20.0% |
| !! | TTTGTGTTTATATAGGAATT+TGG | + | tig0001052:11834-11853 | Msa1336340:intron | 20.0% |
| !!! | CAAGCATATTATCTTTTTTT+TGG | + | tig0001052:12087-12106 | Msa1336340:three_prime_UTR | 20.0% |
| !! | TTCTGATTTGATTTATGAGA+TGG | + | tig0001052:7788-7807 | Msa1336340:intron | 25.0% |
| !! | TCTGATTTGATTTATGAGAT+GGG | + | tig0001052:7789-7808 | Msa1336340:intron | 25.0% |
| !!! | GTTTGTGTTTTTGTTCAATT+TGG | + | tig0001052:7852-7871 | Msa1336340:intron | 25.0% |
| !!! | TTGTTCAATTTGGTTAGTTT+AGG | + | tig0001052:7862-7881 | Msa1336340:intron | 25.0% |
| !!! | TTGGTTAGTTTAGGTTTTTT+TGG | + | tig0001052:7871-7890 | Msa1336340:intron | 25.0% |
| ! | TTAGGCATTTAATCAATATC+AGG | - | tig0001052:8179-8198 | None:intergenic | 25.0% |
| !! | AAATGCCTAAATCTGAAATA+TGG | + | tig0001052:8189-8208 | Msa1336340:intron | 25.0% |
| !! | AACCAAAATTAAAAGTGCAT+CGG | + | tig0001052:8425-8444 | Msa1336340:CDS | 25.0% |
| ! | TCAAGTACTAAACTAAACTA+TGG | - | tig0001052:8625-8644 | None:intergenic | 25.0% |
| !! | AGTTTAGTTTAGTACTTGAT+AGG | + | tig0001052:8626-8645 | Msa1336340:intron | 25.0% |
| ! | AATCCATTGTAAGTTAGTTA+AGG | + | tig0001052:8650-8669 | Msa1336340:intron | 25.0% |
| ! | ATCCATTGTAAGTTAGTTAA+GGG | + | tig0001052:8651-8670 | Msa1336340:intron | 25.0% |
| ! | AAAGCATATCTCCTATAAAT+AGG | + | tig0001052:8702-8721 | Msa1336340:intron | 25.0% |
| ! | ATATCTCCTATAAATAGGAA+TGG | + | tig0001052:8707-8726 | Msa1336340:intron | 25.0% |
| ! | TATCTCCTATAAATAGGAAT+GGG | + | tig0001052:8708-8727 | Msa1336340:intron | 25.0% |
| ! | TAAATCCCATTCCTATTTAT+AGG | - | tig0001052:8716-8735 | None:intergenic | 25.0% |
| ! | AATTCTGTTGGAAAAAGATA+GGG | + | tig0001052:8861-8880 | Msa1336340:intron | 25.0% |
| ! | GAAAAACAAAATTGCAAAAG+AGG | - | tig0001052:8960-8979 | None:intergenic | 25.0% |
| ! | ATAATACTGCGGTATATTAA+TGG | - | tig0001052:8988-9007 | None:intergenic | 25.0% |
| ! | AATTAGATGGAATAATACTG+CGG | - | tig0001052:8999-9018 | None:intergenic | 25.0% |
| ! | CTTAAAAACTCTAACTAAAC+AGG | - | tig0001052:9165-9184 | None:intergenic | 25.0% |
| !!! | TTTTTTCCTAAGACATTTGT+AGG | - | tig0001052:9438-9457 | None:intergenic | 25.0% |
| !! | AATCCTGATCATGTATTTTT+CGG | - | tig0001052:9945-9964 | None:intergenic | 25.0% |
| ! | AAAAATACATGATCAGGATT+TGG | + | tig0001052:9945-9964 | Msa1336340:CDS | 25.0% |
| ! | AAAATACATGATCAGGATTT+GGG | + | tig0001052:9946-9965 | Msa1336340:CDS | 25.0% |
| ! | AAAAGGCTGTAAAAAGATTA+TGG | + | tig0001052:10026-10045 | Msa1336340:CDS | 25.0% |
| ! | AAAAGCTGAGAAAACTAATT+GGG | + | tig0001052:10077-10096 | Msa1336340:CDS | 25.0% |
| ! | CTATCTTAAATGATGTCTAA+AGG | - | tig0001052:10614-10633 | None:intergenic | 25.0% |
| !! | CTTTAGACATCATTTAAGAT+AGG | + | tig0001052:10612-10631 | Msa1336340:intron | 25.0% |
| !!! | TTTTTTTGAAGGATGAGAAA+AGG | + | tig0001052:10680-10699 | Msa1336340:intron | 25.0% |
| !!! | TAGGAGGGAAATTTTTTTTT+TGG | - | tig0001052:10813-10832 | None:intergenic | 25.0% |
| !!! | TATTAAAGCCATATTTCTAG+AGG | - | tig0001052:10982-11001 | None:intergenic | 25.0% |
| !!! | TAGAAATATGGCTTTAATAG+TGG | + | tig0001052:10983-11002 | Msa1336340:intron | 25.0% |
| ! | AGCATTATTAAAGCCATTAA+GGG | - | tig0001052:11078-11097 | None:intergenic | 25.0% |
| ! | TAGCATTATTAAAGCCATTA+AGG | - | tig0001052:11079-11098 | None:intergenic | 25.0% |
| ! | ATAAACAAAAATGTGCAGAA+TGG | - | tig0001052:11113-11132 | None:intergenic | 25.0% |
| !!! | CTAATTTTGGATTTGCTATA+AGG | + | tig0001052:11170-11189 | Msa1336340:intron | 25.0% |
| ! | ATAGAACACAAAAATAGATC+AGG | - | tig0001052:11265-11284 | None:intergenic | 25.0% |
| ! | TAGAAACTGAACATAATGAA+GGG | + | tig0001052:11372-11391 | Msa1336340:CDS | 25.0% |
| ! | ATTGAAAATAATCCTGATGA+TGG | + | tig0001052:11455-11474 | Msa1336340:CDS | 25.0% |
| !! | ACGCATTTTTGTGTTTATAT+AGG | + | tig0001052:11827-11846 | Msa1336340:intron | 25.0% |
| ! | AACAAGGTAGTAAAGTAATA+TGG | + | tig0001052:11888-11907 | Msa1336340:exon | 25.0% |
| ! | TTTCTTGTAACTATAAGTTG+TGG | + | tig0001052:11936-11955 | Msa1336340:three_prime_UTR | 25.0% |
| ! | TTCTTGTAACTATAAGTTGT+GGG | + | tig0001052:11937-11956 | Msa1336340:three_prime_UTR | 25.0% |
| !!! | ACACTTCAAGCATTTTTTTT+TGG | + | tig0001052:12145-12164 | Msa1336340:three_prime_UTR | 25.0% |
| ! | ATTTGATTTATGAGATGGGT+TGG | + | tig0001052:7793-7812 | Msa1336340:intron | 30.0% |
| ! | TCCTTGGTTTAAAATTGACA+TGG | + | tig0001052:8009-8028 | Msa1336340:intron | 30.0% |
| ! | ACCATGTCAATTTTAAACCA+AGG | - | tig0001052:8013-8032 | None:intergenic | 30.0% |
| ! | TGGTTTAAAATTGACATGGT+TGG | + | tig0001052:8013-8032 | Msa1336340:intron | 30.0% |
| ACTTCATGAATTTGGACATT+TGG | + | tig0001052:8047-8066 | Msa1336340:intron | 30.0% | |
| CAAGTCCATATTTCAGATTT+AGG | - | tig0001052:8197-8216 | None:intergenic | 30.0% | |
| TATTAAGTAAGAGATTCCTC+TGG | - | tig0001052:8286-8305 | None:intergenic | 30.0% | |
| !! | TTAGATTATGTGTGTTGACT+AGG | + | tig0001052:8319-8338 | Msa1336340:intron | 30.0% |
| ! | ACCAAAATTAAAAGTGCATC+GGG | + | tig0001052:8426-8445 | Msa1336340:CDS | 30.0% |
| ! | CTTTTCCATGTAACATTTTC+CGG | - | tig0001052:8462-8481 | None:intergenic | 30.0% |
| CAATAGTATGCTGACAATTT+GGG | - | tig0001052:8503-8522 | None:intergenic | 30.0% | |
| TCAATAGTATGCTGACAATT+TGG | - | tig0001052:8504-8523 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGGGTACATTGCTA+TGG | + | tig0001052:8580-8599 | Msa1336340:intron | 30.0% |
| !!! | TTTTTAGGGTACATTGCTAT+GGG | + | tig0001052:8581-8600 | Msa1336340:intron | 30.0% |
| TCCATTGTAAGTTAGTTAAG+GGG | + | tig0001052:8652-8671 | Msa1336340:intron | 30.0% | |
| AGTTAGTTAAGGGGTTATAT+AGG | + | tig0001052:8661-8680 | Msa1336340:intron | 30.0% | |
| TAGGAATGGGATTTATATTG+AGG | + | tig0001052:8721-8740 | Msa1336340:intron | 30.0% | |
| AGGAATGGGATTTATATTGA+GGG | + | tig0001052:8722-8741 | Msa1336340:intron | 30.0% | |
| ATCTAATCCATCAATTCTGT+TGG | + | tig0001052:8849-8868 | Msa1336340:intron | 30.0% | |
| ! | TCTTTTTCCAACAGAATTGA+TGG | - | tig0001052:8859-8878 | None:intergenic | 30.0% |
| CAATTCTGTTGGAAAAAGAT+AGG | + | tig0001052:8860-8879 | Msa1336340:intron | 30.0% | |
| GGGTTCAAACAAAAATTAGA+TGG | - | tig0001052:9012-9031 | None:intergenic | 30.0% | |
| !! | GTTTTTAAGCGTGTATTAGA+TGG | + | tig0001052:9176-9195 | Msa1336340:intron | 30.0% |
| TCAAACTATCTGGATTCAAA+TGG | + | tig0001052:9209-9228 | Msa1336340:intron | 30.0% | |
| AAATGGTCTATCATTAGACT+TGG | + | tig0001052:9226-9245 | Msa1336340:intron | 30.0% | |
| TTATGAGATCGTTTGAGAAA+AGG | + | tig0001052:9263-9282 | Msa1336340:intron | 30.0% | |
| AATCTGTTGTTACATCAGTT+GGG | + | tig0001052:9323-9342 | Msa1336340:intron | 30.0% | |
| TTAGTTCCTACAAATGTCTT+AGG | + | tig0001052:9429-9448 | Msa1336340:intron | 30.0% | |
| ATAATAAACTCGTCAACGAA+AGG | - | tig0001052:9713-9732 | None:intergenic | 30.0% | |
| ATTACTCTTGAAGTGAATGA+TGG | + | tig0001052:9731-9750 | Msa1336340:CDS | 30.0% | |
| TAAGCTTCAATGAAAATGTC+AGG | + | tig0001052:9844-9863 | Msa1336340:intron | 30.0% | |
| GCAATTAAGGCTTATAATAC+TGG | + | tig0001052:9907-9926 | Msa1336340:CDS | 30.0% | |
| GAAAAGCTGAGAAAACTAAT+TGG | + | tig0001052:10076-10095 | Msa1336340:CDS | 30.0% | |
| GTTATGCATCAATATCATCT+AGG | + | tig0001052:10099-10118 | Msa1336340:CDS | 30.0% | |
| TCATAGTGAAAGACAGTATT+CGG | + | tig0001052:10290-10309 | Msa1336340:CDS | 30.0% | |
| !!! | AATGGTTTTAAGGTTTACCT+GGG | - | tig0001052:10349-10368 | None:intergenic | 30.0% |
| !!! | AAATGGTTTTAAGGTTTACC+TGG | - | tig0001052:10350-10369 | None:intergenic | 30.0% |
| AATCTAAATACTCAGTGGTT+TGG | - | tig0001052:10580-10599 | None:intergenic | 30.0% | |
| !!! | GGAAATTTTTTTTTTGGTGG+TGG | - | tig0001052:10807-10826 | None:intergenic | 30.0% |
| !!! | GAGGGAAATTTTTTTTTTGG+TGG | - | tig0001052:10810-10829 | None:intergenic | 30.0% |
| ! | TTTCACATCCTCTAGAAATA+TGG | + | tig0001052:10971-10990 | Msa1336340:intron | 30.0% |
| AACACACAAAACAACTTGTA+AGG | - | tig0001052:11032-11051 | None:intergenic | 30.0% | |
| !! | TTGTTTTGTGTGTTTGAGTT+AGG | + | tig0001052:11038-11057 | Msa1336340:intron | 30.0% |
| ATTATGTTCAGTTTCTACCA+TGG | - | tig0001052:11369-11388 | None:intergenic | 30.0% | |
| GTAGAAACTGAACATAATGA+AGG | + | tig0001052:11371-11390 | Msa1336340:CDS | 30.0% | |
| ACTGAAAATAATGCTGATGA+TGG | + | tig0001052:11404-11423 | Msa1336340:CDS | 30.0% | |
| TAGTGAATCACAAAATCTGT+TGG | + | tig0001052:11493-11512 | Msa1336340:CDS | 30.0% | |
| !! | CAAGATAGCTTTATAGCATT+TGG | + | tig0001052:11861-11880 | Msa1336340:CDS | 30.0% |
| TATAGCATTTGGTTACAACA+AGG | + | tig0001052:11872-11891 | Msa1336340:CDS | 30.0% | |
| !!! | CCTACTTTTCAGGTTGTTTT+AGG | - | tig0001052:7655-7674 | None:intergenic | 35.0% |
| CCTAAAACAACCTGAAAAGT+AGG | + | tig0001052:7652-7671 | Msa1336340:five_prime_UTR | 35.0% | |
| !! | TAGCACAAAACCTACTTTTC+AGG | - | tig0001052:7665-7684 | None:intergenic | 35.0% |
| ACTAAGTGTAACTAGTTCCT+TGG | + | tig0001052:7993-8012 | Msa1336340:intron | 35.0% | |
| ATAAACATCGTGTCGTAAAC+CGG | - | tig0001052:8146-8165 | None:intergenic | 35.0% | |
| GATAATGCTCTTAGATTGTG+TGG | + | tig0001052:8216-8235 | Msa1336340:intron | 35.0% | |
| TTTCTATATGCAGACCATCA+TGG | + | tig0001052:8379-8398 | Msa1336340:intron | 35.0% | |
| !!! | TCCCGATGCACTTTTAATTT+TGG | - | tig0001052:8430-8449 | None:intergenic | 35.0% |
| ACCCCTTAACTAACTTACAA+TGG | - | tig0001052:8656-8675 | None:intergenic | 35.0% | |
| TAAGGGGTTATATAGGTAGT+TGG | + | tig0001052:8668-8687 | Msa1336340:intron | 35.0% | |
| ATGGGATTTATATTGAGGGT+AGG | + | tig0001052:8726-8745 | Msa1336340:intron | 35.0% | |
| TTATATTGAGGGTAGGCAAT+TGG | + | tig0001052:8733-8752 | Msa1336340:intron | 35.0% | |
| GCAATTGGTGAGATTAGAAT+CGG | + | tig0001052:8748-8767 | Msa1336340:intron | 35.0% | |
| GATTAGAATCGGAAAAGTCT+TGG | + | tig0001052:8759-8778 | Msa1336340:intron | 35.0% | |
| ! | TCTTGGTCTCTTGTTATCTA+GGG | + | tig0001052:8776-8795 | Msa1336340:intron | 35.0% |
| !! | ATCGAGAAGTATTGTTTGTG+AGG | + | tig0001052:8887-8906 | Msa1336340:intron | 35.0% |
| !! | TCGAGAAGTATTGTTTGTGA+GGG | + | tig0001052:8888-8907 | Msa1336340:intron | 35.0% |
| AACCCATCAGTTTACTTAGT+AGG | + | tig0001052:9027-9046 | Msa1336340:intron | 35.0% | |
| ACCCATCAGTTTACTTAGTA+GGG | + | tig0001052:9028-9047 | Msa1336340:intron | 35.0% | |
| AATATTTGTAAAGGGCCACA+TGG | - | tig0001052:9065-9084 | None:intergenic | 35.0% | |
| TTTAAGCGTGTATTAGATGG+AGG | + | tig0001052:9179-9198 | Msa1336340:intron | 35.0% | |
| GATCTCATAATGTCCTATGA+TGG | - | tig0001052:9253-9272 | None:intergenic | 35.0% | |
| CAATCTGTTGTTACATCAGT+TGG | + | tig0001052:9322-9341 | Msa1336340:intron | 35.0% | |
| !! | TTGACATTTAGCTTGTGAGT+TGG | - | tig0001052:9358-9377 | None:intergenic | 35.0% |
| GTTGTAAGGTTGTAAAAGAG+TGG | + | tig0001052:9591-9610 | Msa1336340:intron | 35.0% | |
| ! | GGATCAAATTTGACACCTTT+TGG | - | tig0001052:9626-9645 | None:intergenic | 35.0% |
| CAAATTTGATCCATCTGATC+AGG | + | tig0001052:9634-9653 | Msa1336340:CDS | 35.0% | |
| TTGCTTGCAAAATGTGATGT+TGG | + | tig0001052:9671-9690 | Msa1336340:CDS | 35.0% | |
| TATAAGCCTTAATTGCTCTG+TGG | - | tig0001052:9903-9922 | None:intergenic | 35.0% | |
| ACTAAGCCAGTAATCTTGAA+TGG | + | tig0001052:9997-10016 | Msa1336340:CDS | 35.0% | |
| CTAAGCCAGTAATCTTGAAT+GGG | + | tig0001052:9998-10017 | Msa1336340:CDS | 35.0% | |
| TAAGCCAGTAATCTTGAATG+GGG | + | tig0001052:9999-10018 | Msa1336340:CDS | 35.0% | |
| ATCTTGAATGGGGTTCAAAA+AGG | + | tig0001052:10009-10028 | Msa1336340:CDS | 35.0% | |
| ATATCATCTAGGAACAGAAG+AGG | + | tig0001052:10110-10129 | Msa1336340:CDS | 35.0% | |
| ATTGTAGCTTCAATAGCTTC+AGG | - | tig0001052:10222-10241 | None:intergenic | 35.0% | |
| TGAAGCTACAATCACAAAAG+TGG | + | tig0001052:10230-10249 | Msa1336340:CDS | 35.0% | |
| TACAATCACAAAAGTGGATC+CGG | + | tig0001052:10236-10255 | Msa1336340:CDS | 35.0% | |
| GAATACTGTCTTTCACTATG+AGG | - | tig0001052:10291-10310 | None:intergenic | 35.0% | |
| !!! | ATGGTTTTAAGGTTTACCTG+GGG | - | tig0001052:10348-10367 | None:intergenic | 35.0% |
| AGTTCATGGCAAGTCATAAT+AGG | - | tig0001052:10403-10422 | None:intergenic | 35.0% | |
| GATAATGAGTACTCAGTAGT+AGG | + | tig0001052:10467-10486 | Msa1336340:intron | 35.0% | |
| ! | CAAAACCTTTTCTCACTAGT+GGG | - | tig0001052:10658-10677 | None:intergenic | 35.0% |
| ! | ACAAAACCTTTTCTCACTAG+TGG | - | tig0001052:10659-10678 | None:intergenic | 35.0% |
| TGCATAATCTATGCAATGTC+CGG | + | tig0001052:10767-10786 | Msa1336340:intron | 35.0% | |
| !!! | ATTTTTTTTTTGGTGGTGGC+CGG | - | tig0001052:10803-10822 | None:intergenic | 35.0% |
| !! | CTATAGGTGGATTGAAACTA+AGG | - | tig0001052:10864-10883 | None:intergenic | 35.0% |
| CTTAGTTTCAATCCACCTAT+AGG | + | tig0001052:10862-10881 | Msa1336340:intron | 35.0% | |
| !! | TGGCTTTAATAGTGGAGATA+AGG | + | tig0001052:10991-11010 | Msa1336340:intron | 35.0% |
| ! | TTGTAAGGTACAGGCTTTTA+AGG | - | tig0001052:11017-11036 | None:intergenic | 35.0% |
| CAAAACAACTTGTAAGGTAC+AGG | - | tig0001052:11026-11045 | None:intergenic | 35.0% | |
| ! | AAATTAGAAGTGTAGCCAAG+TGG | - | tig0001052:11157-11176 | None:intergenic | 35.0% |
| ! | CTTGGCTACACTTCTAATTT+TGG | + | tig0001052:11157-11176 | Msa1336340:intron | 35.0% |
| AGCAAAAGATGATCTATCCA+TGG | + | tig0001052:11349-11368 | Msa1336340:CDS | 35.0% | |
| ! | ATTCACTATCCCACCATTTT+TGG | - | tig0001052:11481-11500 | None:intergenic | 35.0% |
| TCATCTTTACCATCTCTAGT+AGG | - | tig0001052:11578-11597 | None:intergenic | 35.0% | |
| TGAGCATAAATAGAAAGGCT+GGG | - | tig0001052:11617-11636 | None:intergenic | 35.0% | |
| CTAGCTGAGCATAAATAGAA+AGG | - | tig0001052:11622-11641 | None:intergenic | 35.0% | |
| CTTTCTATTTATGCTCAGCT+AGG | + | tig0001052:11620-11639 | Msa1336340:CDS | 35.0% | |
| ACATTTGACTCTGCATTTGA+AGG | - | tig0001052:11698-11717 | None:intergenic | 35.0% | |
| CTCGTTATTGTTAAACTCTC+CGG | + | tig0001052:11968-11987 | Msa1336340:three_prime_UTR | 35.0% | |
| CAAACAAAGAAGCAACAGTT+AGG | - | tig0001052:11998-12017 | None:intergenic | 35.0% | |
| ! | TGCTTCTTTGTTTGACAACT+TGG | + | tig0001052:12004-12023 | Msa1336340:three_prime_UTR | 35.0% |
| ! | GCTTCTTTGTTTGACAACTT+GGG | + | tig0001052:12005-12024 | Msa1336340:three_prime_UTR | 35.0% |
| ! | ACAACTTGGGCTGTAATTTT+TGG | + | tig0001052:12018-12037 | Msa1336340:three_prime_UTR | 35.0% |
| ATCATCAAGTCTCTCCTCTA+TGG | + | tig0001052:7684-7703 | Msa1336340:exon | 40.0% | |
| CTATGTTTAAATGGCGTTGC+CGG | + | tig0001052:8124-8143 | Msa1336340:intron | 40.0% | |
| GTGATCCGGAAAATGTTACA+TGG | + | tig0001052:8454-8473 | Msa1336340:CDS | 40.0% | |
| ATGGAAAAGCAATCCTACCA+AGG | + | tig0001052:8473-8492 | Msa1336340:CDS | 40.0% | |
| ! | GTCTTGGTCTCTTGTTATCT+AGG | + | tig0001052:8775-8794 | Msa1336340:intron | 40.0% |
| !! | CGAGAAGTATTGTTTGTGAG+GGG | + | tig0001052:8889-8908 | Msa1336340:intron | 40.0% |
| CCCCTACTAAGTAAACTGAT+GGG | - | tig0001052:9032-9051 | None:intergenic | 40.0% | |
| CCCATCAGTTTACTTAGTAG+GGG | + | tig0001052:9029-9048 | Msa1336340:intron | 40.0% | |
| ACCCCTACTAAGTAAACTGA+TGG | - | tig0001052:9033-9052 | None:intergenic | 40.0% | |
| GTGTATTAGATGGAGGATAG+AGG | + | tig0001052:9186-9205 | Msa1336340:intron | 40.0% | |
| AGGATAGAGGTCAAACTATC+TGG | + | tig0001052:9199-9218 | Msa1336340:intron | 40.0% | |
| ! | CATTAGACTTGGTCCATCAT+AGG | + | tig0001052:9237-9256 | Msa1336340:intron | 40.0% |
| AGATTGCAGGCTAAATAGGT+GGG | - | tig0001052:9308-9327 | None:intergenic | 40.0% | |
| CAACAGATTGCAGGCTAAAT+AGG | - | tig0001052:9312-9331 | None:intergenic | 40.0% | |
| CTGATGTAACAACAGATTGC+AGG | - | tig0001052:9321-9340 | None:intergenic | 40.0% | |
| ATTTGATCCATCTGATCAGG+AGG | + | tig0001052:9637-9656 | Msa1336340:CDS | 40.0% | |
| CAAATTACCTCCTGATCAGA+TGG | - | tig0001052:9647-9666 | None:intergenic | 40.0% | |
| CATCTGATCAGGAGGTAATT+TGG | + | tig0001052:9645-9664 | Msa1336340:CDS | 40.0% | |
| ATGTCAGGTGTTAAGCAAGA+TGG | + | tig0001052:9859-9878 | Msa1336340:intron | 40.0% | |
| AATTGCTCTGTGGAAGAAGT+GGG | - | tig0001052:9893-9912 | None:intergenic | 40.0% | |
| TAATTGCTCTGTGGAAGAAG+TGG | - | tig0001052:9894-9913 | None:intergenic | 40.0% | |
| CTTCTTCCACAGAGCAATTA+AGG | + | tig0001052:9894-9913 | Msa1336340:CDS | 40.0% | |
| AGGCTTATAATACTGGCACT+CGG | + | tig0001052:9914-9933 | Msa1336340:CDS | 40.0% | |
| TGAACCCCATTCAAGATTAC+TGG | - | tig0001052:10006-10025 | None:intergenic | 40.0% | |
| GTTCTGTATATGAGTAGTGC+AGG | + | tig0001052:10048-10067 | Msa1336340:CDS | 40.0% | |
| AGGAACAGAAGAGGATGAAA+AGG | + | tig0001052:10119-10138 | Msa1336340:CDS | 40.0% | |
| ACAGAAGAGGATGAAAAGGA+TGG | + | tig0001052:10123-10142 | Msa1336340:CDS | 40.0% | |
| TACTGTCTTTCACTATGAGG+AGG | - | tig0001052:10288-10307 | None:intergenic | 40.0% | |
| CAGTATTCGGATGTAGATCT+AGG | + | tig0001052:10303-10322 | Msa1336340:CDS | 40.0% | |
| ! | TTTAAGGTTTACCTGGGGAA+TGG | - | tig0001052:10343-10362 | None:intergenic | 40.0% |
| ACACTACACACTAGAGTTCA+TGG | - | tig0001052:10417-10436 | None:intergenic | 40.0% | |
| TTAAGCCCACTAGTGAGAAA+AGG | + | tig0001052:10650-10669 | Msa1336340:intron | 40.0% | |
| TGAGCTTAGCTCAGTTTGTA+GGG | + | tig0001052:10740-10759 | Msa1336340:intron | 40.0% | |
| GCATAATCTATGCAATGTCC+GGG | + | tig0001052:10768-10787 | Msa1336340:intron | 40.0% | |
| CATAATCTATGCAATGTCCG+GGG | + | tig0001052:10769-10788 | Msa1336340:intron | 40.0% | |
| !!! | TTTTTTTTTTGGTGGTGGCC+GGG | - | tig0001052:10802-10821 | None:intergenic | 40.0% |
| CTGTAGTATCTTTCTTCTGC+TGG | + | tig0001052:10923-10942 | Msa1336340:intron | 40.0% | |
| ACTTCAACAGTCTCCCTTAA+TGG | + | tig0001052:11062-11081 | Msa1336340:intron | 40.0% | |
| TCATCCAGACAATTCATCTG+AGG | - | tig0001052:11305-11324 | None:intergenic | 40.0% | |
| TTTGCTTGCTCTTCACAATG+AGG | - | tig0001052:11335-11354 | None:intergenic | 40.0% | |
| !! | ATGCTGATGATGGCCAAAAA+TGG | + | tig0001052:11414-11433 | Msa1336340:CDS | 40.0% |
| ! | CTGTTCCTTCACACCATTTT+TGG | - | tig0001052:11430-11449 | None:intergenic | 40.0% |
| !! | ATCCTGATGATGGCCAAAAA+TGG | + | tig0001052:11465-11484 | Msa1336340:CDS | 40.0% |
| !! | TGATGATGGCCAAAAATGGT+GGG | + | tig0001052:11418-11437 | Msa1336340:CDS | 40.0% |
| TCTGTTGGATTCACAACAAC+TGG | + | tig0001052:11508-11527 | Msa1336340:CDS | 40.0% | |
| CATAAATAGAAAGGCTGGGT+TGG | - | tig0001052:11613-11632 | None:intergenic | 40.0% | |
| CTGAGCATAAATAGAAAGGC+TGG | - | tig0001052:11618-11637 | None:intergenic | 40.0% | |
| ATATCCTTCTTCAGATGCTC+TGG | - | tig0001052:11647-11666 | None:intergenic | 40.0% | |
| TGTAGAGAATGACACACCTT+CGG | + | tig0001052:11727-11746 | Msa1336340:CDS | 40.0% | |
| GGAGTTTCGACTAAGTCAAT+TGG | + | tig0001052:11748-11767 | Msa1336340:CDS | 40.0% | |
| AGAAATCTGCATCTCAGATG+AGG | - | tig0001052:11921-11940 | None:intergenic | 40.0% | |
| AGAAAGACACAGCGAGAAAG+AGG | + | tig0001052:7619-7638 | Msa1336340:five_prime_UTR | 45.0% | |
| GAAAGACACAGCGAGAAAGA+GGG | + | tig0001052:7620-7639 | Msa1336340:five_prime_UTR | 45.0% | |
| ATCAAGTCTCTCCTCTATGG+CGG | + | tig0001052:7687-7706 | Msa1336340:exon | 45.0% | |
| CATCTATGCAGTAAGACCAG+AGG | + | tig0001052:8267-8286 | Msa1336340:intron | 45.0% | |
| ! | CTTTTGTCCACTAGCCATGA+TGG | - | tig0001052:8396-8415 | None:intergenic | 45.0% |
| TAGGGTACATTGCTATGGGA+TGG | + | tig0001052:8585-8604 | Msa1336340:intron | 45.0% | |
| AGGGTACATTGCTATGGGAT+GGG | + | tig0001052:8586-8605 | Msa1336340:intron | 45.0% | |
| ATTGTTTGTGAGGGGCCATT+TGG | + | tig0001052:8897-8916 | Msa1336340:intron | 45.0% | |
| CAGATTGCAGGCTAAATAGG+TGG | - | tig0001052:9309-9328 | None:intergenic | 45.0% | |
| AAGGTTGTAAAAGAGTGGCC+TGG | + | tig0001052:9596-9615 | Msa1336340:intron | 45.0% | |
| ! | TTGACACCTTTTGGCAAACC+AGG | - | tig0001052:9617-9636 | None:intergenic | 45.0% |
| AACTCGTCAACGAAAGGATG+AGG | - | tig0001052:9707-9726 | None:intergenic | 45.0% | |
| ACTCATCCTCAAAACTTGCC+AGG | + | tig0001052:9764-9783 | Msa1336340:CDS | 45.0% | |
| ATCCTCAAAACTTGCCAGGT+TGG | + | tig0001052:9768-9787 | Msa1336340:intron | 45.0% | |
| TAAAACGCAAGTCACCAACC+TGG | - | tig0001052:9785-9804 | None:intergenic | 45.0% | |
| GCGCCGAAAAATACATGATC+AGG | + | tig0001052:9939-9958 | Msa1336340:CDS | 45.0% | |
| !! | TTCTTCCAGTTTTGTGCCAG+CGG | - | tig0001052:9978-9997 | None:intergenic | 45.0% |
| CTGTATATGAGTAGTGCAGG+AGG | + | tig0001052:10051-10070 | Msa1336340:CDS | 45.0% | |
| TATATGAGTAGTGCAGGAGG+AGG | + | tig0001052:10054-10073 | Msa1336340:CDS | 45.0% | |
| CAACAGCAGCAAGTCAAACT+GGG | + | tig0001052:10174-10193 | Msa1336340:CDS | 45.0% | |
| GCAAGTCAAACTGGGTGATA+AGG | + | tig0001052:10182-10201 | Msa1336340:CDS | 45.0% | |
| GTCACAGATTTGGGAGTAAC+CGG | - | tig0001052:10258-10277 | None:intergenic | 45.0% | |
| GTGAGCTTAGCTCAGTTTGT+AGG | + | tig0001052:10739-10758 | Msa1336340:intron | 45.0% | |
| !!! | TTTTTTTTTGGTGGTGGCCG+GGG | - | tig0001052:10801-10820 | None:intergenic | 45.0% |
| ACAGTACGTACATGCTAGGA+GGG | - | tig0001052:10828-10847 | None:intergenic | 45.0% | |
| CAACACAGTACGTACATGCT+AGG | - | tig0001052:10832-10851 | None:intergenic | 45.0% | |
| CTAGCATGTACGTACTGTGT+TGG | + | tig0001052:10830-10849 | Msa1336340:intron | 45.0% | |
| CCACCTATAGGCCTTAATTG+CGG | + | tig0001052:10874-10893 | Msa1336340:intron | 45.0% | |
| ATGCCGCAATTAAGGCCTAT+AGG | - | tig0001052:10880-10899 | None:intergenic | 45.0% | |
| GCTCAAAGATGCCGCAATTA+AGG | - | tig0001052:10888-10907 | None:intergenic | 45.0% | |
| ! | AGGAGTGTAACATAGCCACT+TGG | + | tig0001052:11139-11158 | Msa1336340:intron | 45.0% |
| CAATTCATCTGAGGAGGCTT+CGG | - | tig0001052:11296-11315 | None:intergenic | 45.0% | |
| TCCAGACAATTCATCTGAGG+AGG | - | tig0001052:11302-11321 | None:intergenic | 45.0% | |
| GATGGCCAAAAATGGTGTGA+AGG | + | tig0001052:11422-11441 | Msa1336340:CDS | 45.0% | |
| !!! | CACCATTTTTGGCCATCATC+AGG | - | tig0001052:11419-11438 | None:intergenic | 45.0% |
| !! | CTGATGATGGCCAAAAATGG+TGG | + | tig0001052:11417-11436 | Msa1336340:CDS | 45.0% |
| TACCATCTCTAGTAGGAGAC+TGG | - | tig0001052:11571-11590 | None:intergenic | 45.0% | |
| ACTCTGCATTTGAAGGCTCA+AGG | - | tig0001052:11691-11710 | None:intergenic | 45.0% | |
| TGACTTAGTCGAAACTCCGA+AGG | - | tig0001052:11746-11765 | None:intergenic | 45.0% | |
| GAAGCAACAGTTAGGTTTGC+CGG | - | tig0001052:11990-12009 | None:intergenic | 45.0% | |
| TCAAGTCTCTCCTCTATGGC+GGG | + | tig0001052:7688-7707 | Msa1336340:exon | 50.0% | |
| TGTTACATACCCCGCCATAG+AGG | - | tig0001052:7701-7720 | None:intergenic | 50.0% | |
| ATGCAGACCATCATGGCTAG+TGG | + | tig0001052:8386-8405 | Msa1336340:intron | 50.0% | |
| CAATTTGGGCAAGCCTTGGT+AGG | - | tig0001052:8489-8508 | None:intergenic | 50.0% | |
| CTGACAATTTGGGCAAGCCT+TGG | - | tig0001052:8493-8512 | None:intergenic | 50.0% | |
| CTCTACCAGACCAAGCCAAA+TGG | - | tig0001052:8915-8934 | None:intergenic | 50.0% | |
| !! | AGGGGTTTTTGAGCACCATG+TGG | + | tig0001052:9047-9066 | Msa1336340:intron | 50.0% |
| ! | CACCAACCTGGCAAGTTTTG+AGG | - | tig0001052:9773-9792 | None:intergenic | 50.0% |
| !! | CCAGTTTGACTTGCTGCTGT+TGG | - | tig0001052:10176-10195 | None:intergenic | 50.0% |
| CCAACAGCAGCAAGTCAAAC+TGG | + | tig0001052:10173-10192 | Msa1336340:CDS | 50.0% | |
| GGCTCAGGAGTCACAGATTT+GGG | - | tig0001052:10267-10286 | None:intergenic | 50.0% | |
| AGGCTCAGGAGTCACAGATT+TGG | - | tig0001052:10268-10287 | None:intergenic | 50.0% | |
| CTTTCACTATGAGGAGGCTC+AGG | - | tig0001052:10282-10301 | None:intergenic | 50.0% | |
| AAGGTTTACCTGGGGAATGG+CGG | - | tig0001052:10340-10359 | None:intergenic | 50.0% | |
| CAAACTGAGCTAAGCTCACG+AGG | - | tig0001052:10738-10757 | None:intergenic | 50.0% | |
| CACAGTACGTACATGCTAGG+AGG | - | tig0001052:10829-10848 | None:intergenic | 50.0% | |
| CCGCAATTAAGGCCTATAGG+TGG | - | tig0001052:10877-10896 | None:intergenic | 50.0% | |
| GCCTCCTCAGATGAATTGTC+TGG | + | tig0001052:11298-11317 | Msa1336340:intron | 50.0% | |
| AGCCAGTCTCCTACTAGAGA+TGG | + | tig0001052:11566-11585 | Msa1336340:CDS | 50.0% | |
| ! | AGGACCAGAGCATCTGAAGA+AGG | + | tig0001052:11640-11659 | Msa1336340:CDS | 50.0% |
| CAAGTCTCTCCTCTATGGCG+GGG | + | tig0001052:7689-7708 | Msa1336340:exon | 55.0% | |
| ! | TGCATCGGGAGCATGTGATC+CGG | + | tig0001052:8440-8459 | Msa1336340:CDS | 55.0% |
| TTGTGAGGGGCCATTTGGCT+TGG | + | tig0001052:8902-8921 | Msa1336340:intron | 55.0% | |
| ! | GAGTGGCCTGGTTTGCCAAA+AGG | + | tig0001052:9608-9627 | Msa1336340:CDS | 55.0% |
| AGGTTTACCTGGGGAATGGC+GGG | - | tig0001052:10339-10358 | None:intergenic | 55.0% | |
| AGCTCACGAGGACGCTATGA+GGG | - | tig0001052:10726-10745 | None:intergenic | 55.0% | |
| AAGCTCACGAGGACGCTATG+AGG | - | tig0001052:10727-10746 | None:intergenic | 55.0% | |
| AATGTCCGGGGTTCAAACCC+CGG | + | tig0001052:10781-10800 | Msa1336340:intron | 55.0% | |
| !! | AGGGGCCATTTGGCTTGGTC+TGG | + | tig0001052:8907-8926 | Msa1336340:intron | 60.0% |
| AGGATTTGGGTGACGTCCGC+TGG | + | tig0001052:9959-9978 | Msa1336340:CDS | 60.0% | |
| GACGTCCGCTGGCACAAAAC+TGG | + | tig0001052:9970-9989 | Msa1336340:CDS | 60.0% | |
| AGACACACCCGCCATTCCCC+AGG | + | tig0001052:10329-10348 | Msa1336340:CDS | 65.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | - | tig0001052:10789-10808 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001052 | gene | 7569 | 12193 | 7569 | ID=Msa1336340;Name=Msa1336340 |
| tig0001052 | mRNA | 7569 | 12193 | 7569 | ID=Msa1336340-mRNA-1;Parent=Msa1336340;Name=Msa1336340-mRNA-1;_AED=0.02;_eAED=0.02;_QI=134|1|1|1|1|1|6|288|449 |
| tig0001052 | exon | 7569 | 7710 | 7569 | ID=Msa1336340-mRNA-1:exon:681;Parent=Msa1336340-mRNA-1 |
| tig0001052 | exon | 8392 | 8533 | 8392 | ID=Msa1336340-mRNA-1:exon:682;Parent=Msa1336340-mRNA-1 |
| tig0001052 | exon | 9599 | 9785 | 9599 | ID=Msa1336340-mRNA-1:exon:683;Parent=Msa1336340-mRNA-1 |
| tig0001052 | exon | 9866 | 10350 | 9866 | ID=Msa1336340-mRNA-1:exon:684;Parent=Msa1336340-mRNA-1 |
| tig0001052 | exon | 11299 | 11769 | 11299 | ID=Msa1336340-mRNA-1:exon:685;Parent=Msa1336340-mRNA-1 |
| tig0001052 | exon | 11849 | 12193 | 11849 | ID=Msa1336340-mRNA-1:exon:686;Parent=Msa1336340-mRNA-1 |
| tig0001052 | five_prime_UTR | 7569 | 7702 | 7569 | ID=Msa1336340-mRNA-1:five_prime_utr;Parent=Msa1336340-mRNA-1 |
| tig0001052 | CDS | 7703 | 7710 | 7703 | ID=Msa1336340-mRNA-1:cds;Parent=Msa1336340-mRNA-1 |
| tig0001052 | CDS | 8392 | 8533 | 8392 | ID=Msa1336340-mRNA-1:cds;Parent=Msa1336340-mRNA-1 |
| tig0001052 | CDS | 9599 | 9785 | 9599 | ID=Msa1336340-mRNA-1:cds;Parent=Msa1336340-mRNA-1 |
| tig0001052 | CDS | 9866 | 10350 | 9866 | ID=Msa1336340-mRNA-1:cds;Parent=Msa1336340-mRNA-1 |
| tig0001052 | CDS | 11299 | 11769 | 11299 | ID=Msa1336340-mRNA-1:cds;Parent=Msa1336340-mRNA-1 |
| tig0001052 | CDS | 11849 | 11905 | 11849 | ID=Msa1336340-mRNA-1:cds;Parent=Msa1336340-mRNA-1 |
| tig0001052 | three_prime_UTR | 11906 | 12193 | 11906 | ID=Msa1336340-mRNA-1:three_prime_utr;Parent=Msa1336340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
