AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337080 MtrunA17_Chr6g0455511 100.000 250 0 0 1 250 1 250 0.0 519
Msa1337080 MtrunA17_Chr7g0220111 87.698 252 26 4 1 250 1 249 3.51e-161 446
Msa1337080 MtrunA17_Chr3g0122251 65.759 257 68 6 1 249 1 245 2.10e-110 318
Msa1337080 MtrunA17_Chr5g0420091 63.470 219 75 2 1 218 1 215 2.30e-97 283
Msa1337080 MtrunA17_Chr4g0061671 66.667 174 57 1 1 174 1 173 3.14e-79 236
Msa1337080 MtrunA17_Chr8g0351051 50.000 256 117 7 1 250 1 251 2.28e-72 221
Msa1337080 MtrunA17_Chr4g0061691 60.355 169 66 1 1 168 1 169 7.75e-63 196
Msa1337080 MtrunA17_Chr8g0377551 55.729 192 67 7 63 249 1 179 1.26e-58 184
Msa1337080 MtrunA17_Chr8g0366231 45.374 227 114 3 1 226 1 218 8.84e-57 181
Msa1337080 MtrunA17_Chr6g0474371 50.838 179 86 1 1 177 1 179 2.36e-54 173
Msa1337080 MtrunA17_Chr7g0220121 40.234 256 142 5 1 250 1 251 2.65e-51 167
Msa1337080 MtrunA17_Chr1g0204111 49.133 173 85 2 1 171 17 188 1.50e-50 166
Msa1337080 MtrunA17_Chr5g0420081 49.425 174 87 1 1 173 1 174 4.13e-50 164
Msa1337080 MtrunA17_Chr4g0057151 50.000 168 82 2 1 167 1 167 3.39e-46 153
Msa1337080 MtrunA17_Chr3g0077501 46.667 180 84 4 1 174 1 174 1.06e-44 149
Msa1337080 MtrunA17_Chr8g0380021 46.629 178 85 4 1 173 17 189 5.82e-44 148
Msa1337080 MtrunA17_Chr3g0097101 41.071 224 118 5 1 220 16 229 6.34e-44 148
Msa1337080 MtrunA17_Chr8g0351031 42.995 207 107 5 1 202 1 201 1.08e-43 147
Msa1337080 MtrunA17_Chr2g0284911 44.828 174 94 2 1 173 16 188 3.25e-43 147
Msa1337080 MtrunA17_Chr7g0246431 48.521 169 85 2 1 168 1 168 7.81e-43 144
Msa1337080 MtrunA17_Chr2g0279821 41.489 188 109 1 1 188 1 187 1.52e-42 144
Msa1337080 MtrunA17_Chr8g0351041 46.667 165 79 4 1 160 1 161 4.15e-40 136
Msa1337080 MtrunA17_Chr5g0411691 35.398 226 131 3 1 213 1 224 4.63e-39 135
Msa1337080 MtrunA17_Chr4g0049541 37.850 214 122 3 1 205 1 212 7.68e-39 134
Msa1337080 MtrunA17_Chr8g0377561 98.361 61 1 0 1 61 1 61 9.03e-37 125
Msa1337080 MtrunA17_Chr4g0018421 43.195 169 94 2 1 167 1 169 2.95e-36 127
Msa1337080 MtrunA17_Chr4g0020221 46.067 178 90 3 1 174 1 176 1.91e-34 124
Msa1337080 MtrunA17_Chr1g0164791 41.954 174 94 4 1 168 1 173 2.23e-34 123
Msa1337080 MtrunA17_Chr5g0427401 36.364 220 125 6 1 216 1 209 5.09e-34 122
Msa1337080 MtrunA17_Chr7g0246381 83.824 68 11 0 1 68 1 68 1.68e-33 116
Msa1337080 MtrunA17_Chr3g0125241 45.205 146 75 2 1 145 26 167 1.89e-33 120
Msa1337080 MtrunA17_Chr5g0412271 43.407 182 96 4 1 179 1 178 2.36e-33 120
Msa1337080 MtrunA17_Chr2g0308251 69.333 75 23 0 1 75 1 75 2.64e-32 113
Msa1337080 MtrunA17_Chr5g0412461 43.529 170 90 3 1 167 1 167 1.28e-31 116
Msa1337080 MtrunA17_Chr1g0159661 38.547 179 91 4 1 173 1 166 9.86e-29 107
Msa1337080 MtrunA17_Chr5g0404951 36.190 210 116 6 1 202 1 200 1.14e-28 108
Msa1337080 MtrunA17_Chr3g0142191 41.139 158 87 3 1 157 1 153 1.41e-28 108
Msa1337080 MtrunA17_Chr4g0049901 39.247 186 104 5 1 181 27 208 3.27e-27 105
Msa1337080 MtrunA17_Chr1g0173161 69.565 69 21 0 1 69 1 69 3.50e-26 97.8
Msa1337080 MtrunA17_Chr5g0427921 63.333 60 22 0 1 60 1 60 1.27e-21 85.1
Msa1337080 MtrunA17_Chr4g0044071 64.912 57 20 0 1 57 1 57 7.72e-21 84.7
Msa1337080 MtrunA17_Chr3g0134451 58.571 70 29 0 1 70 1 70 7.98e-21 89.4
Msa1337080 MtrunA17_Chr5g0425191 66.667 57 19 0 1 57 1 57 1.66e-20 83.6
Msa1337080 MtrunA17_Chr2g0308271 32.000 200 113 6 54 250 27 206 3.59e-20 85.5
Msa1337080 MtrunA17_Chr2g0292791 52.174 69 32 1 2 70 9 76 1.89e-17 79.0
Msa1337080 MtrunA17_Chr1g0166611 75.556 45 11 0 16 60 20 64 2.17e-17 76.3
Msa1337080 MtrunA17_Chr1g0208561 49.275 69 34 1 2 70 9 76 6.43e-17 77.4
Msa1337080 MtrunA17_Chr1g0208581 49.275 69 34 1 2 70 9 76 6.50e-17 77.0
Msa1337080 MtrunA17_Chr3g0089141 49.275 69 34 1 2 70 9 76 7.34e-17 77.0
Msa1337080 MtrunA17_Chr2g0325971 47.826 69 35 1 2 70 9 76 1.46e-16 76.3
Msa1337080 MtrunA17_Chr3g0099421 52.174 69 32 1 2 70 34 101 1.68e-16 76.6
Msa1337080 MtrunA17_Chr8g0379021 42.708 96 50 3 2 96 12 103 5.57e-16 73.6
Msa1337080 MtrunA17_Chr3g0099411 49.275 69 34 1 2 70 9 76 5.86e-16 74.3
Msa1337080 MtrunA17_Chr5g0419601 51.429 70 33 1 1 70 8 76 6.96e-16 74.7
Msa1337080 MtrunA17_Chr8g0355091 49.275 69 34 1 2 70 9 76 7.54e-16 74.3
Msa1337080 MtrunA17_Chr1g0187361 49.275 69 34 1 2 70 9 76 7.85e-16 74.3
Msa1337080 MtrunA17_Chr1g0206701 49.275 69 34 1 2 70 9 76 8.95e-16 74.3
Msa1337080 MtrunA17_Chr1g0206721 49.275 69 34 1 2 70 9 76 9.32e-16 74.3
Msa1337080 MtrunA17_Chr1g0149391 50.725 69 33 1 2 70 9 76 2.33e-15 73.2
Msa1337080 MtrunA17_Chr2g0317451 50.725 69 33 1 2 70 9 76 3.12e-15 72.8
Msa1337080 MtrunA17_Chr1g0188671 49.275 69 34 1 2 70 47 114 3.42e-15 73.2
Msa1337080 MtrunA17_Chr2g0317481 50.725 69 33 1 2 70 9 76 3.52e-15 72.8
Msa1337080 MtrunA17_Chr2g0333981 48.611 72 36 1 1 72 11 81 9.77e-15 70.1
Msa1337080 MtrunA17_Chr1g0206991 46.377 69 36 1 2 70 9 76 1.13e-14 70.1
Msa1337080 MtrunA17_Chr8g0357771 49.206 63 31 1 1 63 1 62 1.54e-14 69.7
Msa1337080 MtrunA17_Chr8g0376821 52.632 57 27 0 1 57 1 57 1.96e-14 69.3
Msa1337080 MtrunA17_Chr5g0417661 47.143 70 30 1 1 70 56 118 2.35e-14 67.8
Msa1337080 MtrunA17_Chr5g0422941 49.275 69 34 1 2 70 9 76 2.68e-14 70.1
Msa1337080 MtrunA17_Chr5g0422421 49.275 69 34 1 2 70 9 76 3.77e-14 69.7
Msa1337080 MtrunA17_Chr1g0169761 52.632 57 27 0 1 57 1 57 6.26e-14 68.2
Msa1337080 MtrunA17_Chr4g0052061 32.168 143 85 5 1 139 1 135 9.62e-14 67.0
Msa1337080 MtrunA17_Chr1g0175611 50.877 57 28 0 1 57 1 57 1.24e-13 67.0
Msa1337080 MtrunA17_Chr2g0300441 46.479 71 35 2 2 70 7 76 2.29e-13 67.4
Msa1337080 MtrunA17_Chr1g0180591 49.123 57 29 0 1 57 1 57 2.92e-13 66.2
Msa1337080 MtrunA17_Chr3g0119901 42.857 70 39 1 1 70 8 76 3.04e-13 66.6
Msa1337080 MtrunA17_Chr4g0074101 49.123 57 29 0 1 57 1 57 3.62e-13 66.2
Msa1337080 MtrunA17_Chr3g0089151 43.478 69 38 1 2 70 9 76 3.97e-13 64.7
Msa1337080 MtrunA17_Chr1g0175601 50.877 57 28 0 1 57 1 57 4.73e-13 65.5
Msa1337080 MtrunA17_Chr3g0085241 42.857 70 39 1 1 70 40 108 8.12e-13 66.2
Msa1337080 MtrunA17_Chr2g0300421 50.000 56 28 0 2 57 9 64 1.40e-12 64.3
Msa1337080 MtrunA17_Chr4g0018951 46.835 79 35 2 16 94 26 97 1.45e-12 63.9
Msa1337080 MtrunA17_Chr4g0052081 41.429 70 40 1 1 70 1 69 1.51e-12 64.3
Msa1337080 MtrunA17_Chr4g0060841 50.943 53 26 0 1 53 1 53 1.57e-12 66.2
Msa1337080 MtrunA17_Chr7g0246401 34.307 137 73 5 122 250 2 129 1.46e-11 60.5
Msa1337080 MtrunA17_Chr8g0356071 45.614 57 31 0 1 57 1 57 1.75e-11 60.8
Msa1337080 MtrunA17_Chr1g0206691 48.333 60 30 1 11 70 1 59 2.99e-11 61.2
Msa1337080 MtrunA17_Chr1g0187351 48.333 60 30 1 11 70 1 59 5.40e-11 57.4
Msa1337080 MtrunA17_Chr3g0111841 51.786 56 26 1 8 63 2 56 7.87e-11 56.6
Msa1337080 MtrunA17_Chr5g0427961 31.818 110 75 0 62 171 5 114 8.75e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337080 AT3G02310.1 73.228 254 60 4 1 250 1 250 1.62e-133 377
Msa1337080 AT5G15800.1 74.609 256 54 5 1 250 1 251 1.80e-125 356
Msa1337080 AT5G15800.2 73.004 263 57 5 1 250 1 262 2.29e-125 357
Msa1337080 AT3G02310.2 82.486 177 30 1 1 176 1 177 3.41e-102 295
Msa1337080 AT1G24260.1 62.257 257 75 4 1 249 1 243 3.37e-101 295
Msa1337080 AT1G24260.2 62.016 258 75 4 1 249 1 244 5.33e-101 294
Msa1337080 AT1G24260.3 61.265 253 71 3 1 249 1 230 1.19e-94 278
Msa1337080 AT2G03710.1 54.406 261 105 3 1 250 1 258 1.05e-93 276
Msa1337080 AT2G03710.2 54.406 261 104 4 1 250 1 257 5.92e-92 271
Msa1337080 AT2G03710.3 68.023 172 54 1 1 171 1 172 5.43e-81 241
Msa1337080 AT2G45650.1 49.027 257 119 7 1 250 1 252 5.59e-72 221
Msa1337080 AT1G69120.2 52.299 174 82 1 1 173 1 174 3.94e-58 185
Msa1337080 AT1G69120.1 52.299 174 82 1 1 173 1 174 2.61e-57 183
Msa1337080 AT5G60910.1 42.231 251 128 5 1 250 1 235 6.91e-57 182
Msa1337080 AT1G26310.1 53.409 176 79 1 1 173 1 176 9.83e-57 182
Msa1337080 AT3G61120.1 44.643 224 95 3 1 224 1 195 1.02e-53 174
Msa1337080 AT4G09960.6 44.886 176 93 3 1 174 2 175 8.92e-47 155
Msa1337080 AT4G09960.1 44.886 176 93 3 1 174 1 174 9.87e-47 155
Msa1337080 AT4G09960.5 44.886 176 93 3 1 174 11 184 1.43e-46 155
Msa1337080 AT4G09960.3 44.886 176 93 3 1 174 27 200 3.98e-46 155
Msa1337080 AT3G30260.1 51.299 154 70 2 1 151 1 152 1.92e-45 152
Msa1337080 AT2G45660.1 48.837 172 84 3 1 170 1 170 2.75e-45 151
Msa1337080 AT3G58780.5 47.159 176 87 4 1 173 22 194 9.69e-45 151
Msa1337080 AT3G58780.1 47.159 176 87 4 1 173 16 188 9.89e-45 151
Msa1337080 AT2G42830.1 47.727 176 86 4 1 173 16 188 3.33e-44 149
Msa1337080 AT4G09960.4 42.781 187 91 5 1 185 96 268 5.80e-44 151
Msa1337080 AT4G18960.1 46.409 181 90 4 2 180 18 193 1.22e-43 148
Msa1337080 AT4G11880.2 51.282 156 76 0 1 156 1 156 2.09e-43 145
Msa1337080 AT4G11880.3 51.282 156 76 0 1 156 1 156 2.09e-43 145
Msa1337080 AT4G09960.2 49.306 144 69 3 1 142 1 142 2.13e-43 146
Msa1337080 AT2G45660.2 49.367 158 76 3 1 156 1 156 4.04e-43 144
Msa1337080 AT4G22950.2 47.093 172 90 1 1 172 1 171 4.64e-43 144
Msa1337080 AT4G37940.1 36.596 235 137 5 1 230 1 228 7.13e-43 145
Msa1337080 AT2G42830.2 49.057 159 75 4 1 156 16 171 1.29e-42 145
Msa1337080 AT3G58780.2 46.023 176 82 4 1 173 16 181 1.90e-42 145
Msa1337080 AT4G22950.3 47.647 170 88 1 1 170 1 169 2.67e-42 144
Msa1337080 AT4G22950.1 47.647 170 88 1 1 170 1 169 2.67e-42 144
Msa1337080 AT4G11880.4 50.000 172 86 0 1 172 1 172 3.94e-42 143
Msa1337080 AT4G11880.1 50.000 172 86 0 1 172 1 172 3.94e-42 143
Msa1337080 AT3G58780.4 51.333 150 67 4 1 147 16 162 4.03e-41 142
Msa1337080 AT3G58780.3 42.000 200 87 4 1 173 16 213 5.17e-41 142
Msa1337080 AT5G62165.3 46.199 171 90 2 1 170 1 170 8.41e-41 139
Msa1337080 AT5G62165.1 46.199 171 90 2 1 170 1 170 8.41e-41 139
Msa1337080 AT5G62165.2 46.199 171 90 2 1 170 1 170 8.41e-41 139
Msa1337080 AT3G57230.1 43.275 171 96 1 1 171 1 170 1.18e-40 140
Msa1337080 AT3G57230.4 43.275 171 96 1 1 171 1 170 1.18e-40 140
Msa1337080 AT2G22630.1 38.500 200 113 2 1 200 1 190 4.22e-39 135
Msa1337080 AT2G22630.2 38.500 200 113 2 1 200 1 190 4.22e-39 135
Msa1337080 AT3G57230.2 48.252 143 73 1 1 143 1 142 1.04e-38 132
Msa1337080 AT5G62165.17 46.497 157 82 2 1 156 1 156 1.48e-38 132
Msa1337080 AT5G62165.12 46.497 157 82 2 1 156 1 156 1.48e-38 132
Msa1337080 AT5G62165.11 46.497 157 82 2 1 156 1 156 1.48e-38 132
Msa1337080 AT4G37940.4 40.625 192 112 2 1 192 1 190 2.33e-38 133
Msa1337080 AT2G14210.2 39.899 198 114 1 1 193 1 198 5.45e-38 133
Msa1337080 AT2G14210.1 39.899 198 114 1 1 193 1 198 5.48e-38 133
Msa1337080 AT5G51870.1 42.458 179 97 3 1 177 1 175 1.68e-37 131
Msa1337080 AT5G62165.6 46.259 147 77 2 1 146 1 146 1.24e-36 127
Msa1337080 AT5G62165.9 46.259 147 77 2 1 146 1 146 1.24e-36 127
Msa1337080 AT5G62165.7 46.259 147 77 2 1 146 1 146 1.24e-36 127
Msa1337080 AT5G62165.8 46.259 147 77 2 1 146 1 146 1.24e-36 127
Msa1337080 AT5G62165.13 46.259 147 77 2 1 146 1 146 1.24e-36 127
Msa1337080 AT5G62165.10 45.223 157 84 2 1 156 1 156 1.85e-36 128
Msa1337080 AT5G62165.4 45.223 157 84 2 1 156 1 156 1.85e-36 128
Msa1337080 AT4G37940.3 46.479 142 75 1 1 142 1 141 2.13e-36 127
Msa1337080 AT5G51870.4 42.938 177 95 3 1 175 1 173 9.64e-36 127
Msa1337080 AT5G51870.3 42.938 177 95 3 1 175 11 183 1.29e-35 127
Msa1337080 AT5G13790.2 40.807 223 121 6 1 218 1 217 2.82e-35 127
Msa1337080 AT5G13790.1 40.359 223 119 5 1 218 1 214 5.82e-35 126
Msa1337080 AT3G57390.3 43.333 180 93 2 1 172 1 179 5.90e-35 125
Msa1337080 AT5G51860.2 40.571 175 101 2 1 173 1 174 7.26e-35 124
Msa1337080 AT3G57390.1 43.333 180 93 2 1 172 1 179 1.01e-34 125
Msa1337080 AT2G22540.3 40.476 168 98 2 1 167 1 167 2.07e-34 124
Msa1337080 AT2G22540.1 40.476 168 98 2 1 167 1 167 2.07e-34 124
Msa1337080 AT5G51860.1 40.698 172 99 2 1 170 1 171 2.36e-34 123
Msa1337080 AT5G23260.2 37.264 212 120 4 1 211 1 200 5.73e-34 123
Msa1337080 AT5G20240.1 41.111 180 85 5 1 173 1 166 7.71e-34 121
Msa1337080 AT5G23260.4 37.264 212 120 4 1 211 17 216 9.19e-34 123
Msa1337080 AT1G71692.1 40.107 187 96 2 1 175 1 183 9.89e-34 121
Msa1337080 AT5G65050.2 41.071 168 92 2 1 168 1 161 1.53e-33 120
Msa1337080 AT5G10140.4 40.230 174 89 3 1 168 1 165 3.36e-33 119
Msa1337080 AT5G51870.2 44.521 146 78 2 1 144 1 145 3.79e-33 119
Msa1337080 AT5G65050.3 41.071 168 92 2 1 168 1 161 4.05e-33 119
Msa1337080 AT5G51870.5 44.521 146 78 2 1 144 24 168 1.36e-32 118
Msa1337080 AT5G65060.3 39.881 168 94 3 1 168 1 161 2.42e-32 117
Msa1337080 AT5G65050.5 39.881 168 83 2 1 168 1 150 4.05e-32 116
Msa1337080 AT5G65060.1 39.881 168 94 3 1 168 1 161 4.34e-32 117
Msa1337080 AT5G10140.1 42.953 149 74 2 1 147 1 140 4.98e-32 116
Msa1337080 AT5G10140.2 42.953 149 74 2 1 147 1 140 5.01e-32 115
Msa1337080 AT5G20240.2 46.575 146 61 4 1 139 1 136 7.24e-32 114
Msa1337080 AT5G10140.3 42.953 149 74 2 1 147 1 140 8.41e-32 115
Msa1337080 AT5G65050.1 39.535 172 93 3 1 168 1 165 1.89e-31 114
Msa1337080 AT4G24540.1 42.135 178 95 3 1 174 1 174 2.88e-31 115
Msa1337080 AT5G23260.1 36.792 212 116 5 1 211 17 211 9.70e-31 115
Msa1337080 AT5G65070.1 42.197 173 89 3 1 171 1 164 1.04e-30 113
Msa1337080 AT5G65060.2 38.690 168 85 3 1 168 1 150 1.14e-30 112
Msa1337080 AT5G62165.14 70.833 72 20 1 1 72 1 71 5.91e-30 108
Msa1337080 AT5G65080.3 41.401 157 83 3 1 156 8 156 1.65e-29 110
Msa1337080 AT5G23260.3 41.497 147 83 2 1 146 1 145 5.68e-29 110
Msa1337080 AT2G22540.2 36.905 168 99 2 1 167 1 162 1.05e-28 109
Msa1337080 AT5G65070.2 37.374 198 94 4 1 171 1 195 1.36e-27 106
Msa1337080 AT3G54340.1 37.572 173 103 2 1 172 1 169 3.36e-27 105
Msa1337080 AT1G31140.2 42.308 156 73 3 1 146 1 149 4.09e-26 101
Msa1337080 AT1G31140.1 40.816 147 86 1 1 146 1 147 6.01e-26 101
Msa1337080 AT5G65080.2 34.722 216 122 4 1 216 8 204 8.78e-26 100
Msa1337080 AT1G77080.5 38.728 173 99 2 1 173 1 166 1.96e-25 99.0
Msa1337080 AT1G77080.11 37.640 178 104 2 1 178 1 171 3.43e-25 98.2
Msa1337080 AT5G65070.4 42.282 149 75 3 1 147 1 140 3.67e-25 97.4
Msa1337080 AT1G77080.4 38.012 171 99 2 1 171 1 164 9.12e-25 97.8
Msa1337080 AT5G65070.5 36.612 183 86 4 1 156 1 180 3.50e-24 96.7
Msa1337080 AT5G65070.3 33.824 204 94 4 1 171 1 196 1.71e-23 95.5
Msa1337080 AT1G77080.8 33.333 195 102 3 1 171 1 191 7.06e-22 90.9
Msa1337080 AT1G22130.1 48.889 90 37 1 1 90 1 81 1.43e-20 89.4
Msa1337080 AT1G77080.2 36.842 171 97 3 1 171 1 160 1.53e-20 86.7
Msa1337080 AT1G77980.1 54.054 74 34 0 1 74 1 74 5.75e-20 87.8
Msa1337080 AT1G69120.3 40.179 112 66 1 63 173 1 112 1.27e-19 84.0
Msa1337080 AT5G60910.2 31.217 189 113 4 63 250 1 173 3.84e-18 79.7
Msa1337080 AT1G77080.12 37.179 156 87 3 1 156 1 145 5.86e-18 78.6
Msa1337080 AT1G77950.3 45.556 90 40 1 1 90 1 81 2.20e-17 79.3
Msa1337080 AT1G77950.2 45.556 90 40 1 1 90 1 81 2.20e-17 79.3
Msa1337080 AT1G77950.1 45.556 90 40 1 1 90 1 81 2.20e-17 79.3
Msa1337080 AT1G77950.4 45.556 90 40 1 1 90 1 81 2.20e-17 79.3
Msa1337080 AT1G65360.1 35.593 118 61 3 1 109 6 117 1.94e-16 76.3
Msa1337080 AT1G01530.1 35.484 155 88 4 1 154 6 149 1.99e-16 76.6
Msa1337080 AT4G37435.1 59.649 57 23 0 1 57 1 57 2.64e-16 75.1
Msa1337080 AT4G36590.1 41.379 87 50 1 2 88 7 92 1.28e-14 71.6
Msa1337080 AT2G03060.3 36.190 105 58 2 1 104 1 97 1.54e-14 72.8
Msa1337080 AT2G03060.7 36.190 105 58 2 1 104 1 97 1.54e-14 72.8
Msa1337080 AT2G03060.1 36.190 105 58 2 1 104 1 97 1.54e-14 72.8
Msa1337080 AT2G03060.2 36.190 105 58 2 1 104 1 97 2.00e-14 72.4
Msa1337080 AT5G60440.1 34.286 140 71 4 2 139 7 127 2.09e-14 71.6
Msa1337080 AT1G18750.4 52.632 57 27 0 1 57 1 57 3.49e-14 71.6
Msa1337080 AT1G18750.1 52.632 57 27 0 1 57 1 57 3.71e-14 71.6
Msa1337080 AT1G18750.3 52.632 57 27 0 1 57 1 57 4.46e-14 71.6
Msa1337080 AT3G04100.1 45.205 73 39 1 2 74 14 85 4.70e-14 69.3
Msa1337080 AT2G24840.1 47.143 70 36 1 1 70 62 130 4.89e-14 70.1
Msa1337080 AT1G72350.1 47.826 69 33 1 2 70 43 108 3.89e-13 67.0
Msa1337080 AT1G69540.1 29.703 202 113 7 1 173 1 202 5.23e-13 68.2
Msa1337080 AT1G69540.2 27.228 202 118 4 1 173 1 202 6.33e-13 67.8
Msa1337080 AT2G34440.1 38.889 72 43 1 1 72 1 71 1.26e-12 64.7
Msa1337080 AT3G66656.1 40.845 71 41 1 1 71 1 70 2.17e-12 64.3
Msa1337080 AT1G29962.1 46.377 69 36 1 2 70 8 75 7.85e-12 62.8
Msa1337080 AT4G37940.2 26.590 173 116 4 63 230 1 167 1.40e-11 61.6
Msa1337080 AT1G47760.1 35.714 112 62 3 1 111 1 103 1.72e-11 62.0
Msa1337080 AT1G28460.1 44.928 69 37 1 2 70 8 75 4.03e-11 60.8

Find 48 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCCATGTTTGCCTATAC+TGG 0.207949 tig0001375:+6478 None:intergenic
CTTAATTGCAGAAACCTTCT+TGG 0.232016 tig0001375:-7712 Msa1337080:intron
CTCATAAAGCTTGCCTCTAT+TGG 0.248430 tig0001375:+10469 None:intergenic
ACTCAAGCTCAACAAGTTAA+TGG 0.276163 tig0001375:-5710 Msa1337080:CDS
CTGCACCATAGCTGCACTTT+TGG 0.300781 tig0001375:+8689 None:intergenic
ATTAGCTGATCTTCAAAATA+AGG 0.304837 tig0001375:-6922 Msa1337080:intron
ACAAAGCTTCTTTCAGCCTT+TGG 0.321218 tig0001375:-6412 Msa1337080:CDS
CAAGTTAATGGATTTATTCC+TGG 0.326103 tig0001375:-5698 Msa1337080:CDS
TTCAAGCTGCTCAAGATCTT+TGG 0.326567 tig0001375:+7666 None:intergenic
CTTGATGCAGGACTGATTAC+AGG 0.331896 tig0001375:-5772 Msa1337080:intron
TTTATATACCTCAAGCTCTT+TGG 0.339567 tig0001375:+8648 None:intergenic
CTAATTGGTCCAGCATGAAT+TGG 0.369438 tig0001375:+6940 None:intergenic
GGTGAAGACTTAGGTCCATT+AGG 0.390262 tig0001375:-7691 Msa1337080:CDS
CTTATTATCTTCTCCAATAG+AGG 0.396704 tig0001375:-10482 Msa1337080:CDS
GCATGCTCAAAACGCTTGAT+AGG 0.415680 tig0001375:-8714 Msa1337080:CDS
ACATTTGCAAAGAGAAGAAA+TGG 0.424187 tig0001375:-10557 Msa1337080:CDS
GGAAGCTGGTGATCAAAGTA+TGG 0.434521 tig0001375:-6460 Msa1337080:CDS
TCAAGATCTTTGGTACCTAA+TGG 0.441434 tig0001375:+7676 None:intergenic
TATTACCCTATCTGCAATGT+TGG 0.448140 tig0001375:+6381 None:intergenic
AAACAGATCTTTGTCTATGA+AGG 0.464986 tig0001375:-6802 Msa1337080:intron
TGCAATCCAACATTGCAGAT+AGG 0.474506 tig0001375:-6387 Msa1337080:CDS
GTTAGCTGATCTGATGCTAC+TGG 0.476275 tig0001375:+5740 None:intergenic
GAGGAAGAGTGGAATTGAAA+AGG 0.478417 tig0001375:-10607 Msa1337080:CDS
TATACCTCAAGCTCTTTGGC+AGG 0.482984 tig0001375:+8652 None:intergenic
GCAATCCAACATTGCAGATA+GGG 0.488188 tig0001375:-6386 Msa1337080:intron
TCAATTCAAGAAACCAGTAT+AGG 0.489033 tig0001375:-6491 Msa1337080:CDS
AACCTTCTTGGTGAAGACTT+AGG 0.497236 tig0001375:-7700 Msa1337080:CDS
TATAGGCAAACATGGGAAGC+TGG 0.508553 tig0001375:-6474 Msa1337080:CDS
TAATTGGTCCAGCATGAATT+GGG 0.508602 tig0001375:+6941 None:intergenic
CAAGATTTGAATCTCTTCAA+AGG 0.513932 tig0001375:-7832 Msa1337080:CDS
AGGTACCAAAAGTGCAGCTA+TGG 0.519687 tig0001375:-8694 Msa1337080:CDS
GGTGATCAAAGTATGGCATA+TGG 0.522384 tig0001375:-6453 Msa1337080:CDS
GAAAATGGGAAGAGGAAGAG+TGG 0.539131 tig0001375:-10618 None:intergenic
TTAATGGATTTATTCCTGGA+TGG 0.541666 tig0001375:-5694 Msa1337080:CDS
GAAACCAGTATAGGCAAACA+TGG 0.541844 tig0001375:-6482 Msa1337080:CDS
AATCTCTTCAAAGGACTCAA+AGG 0.546223 tig0001375:-7823 Msa1337080:intron
GACCTAAGTCTTCACCAAGA+AGG 0.551505 tig0001375:+7698 None:intergenic
TTGAAGTTGAAAATGGGAAG+AGG 0.556816 tig0001375:-10626 None:intergenic
TTTGCAGACCCAATTCATGC+TGG 0.559190 tig0001375:-6949 Msa1337080:intron
CTTTCAGCTTCAAGTACTCA+CGG 0.561889 tig0001375:+7855 None:intergenic
TTAGCTCAAAGCATCCATCC+AGG 0.582969 tig0001375:+5680 None:intergenic
GCTTGAGAGAAGAATCAAGT+TGG 0.598020 tig0001375:+7641 None:intergenic
CAAACCTGCCAAAGAGCTTG+AGG 0.604710 tig0001375:-8656 Msa1337080:intron
TTTGCCACAGGAGCATATGT+TGG 0.608273 tig0001375:-6832 Msa1337080:intron
AATGTTGGATTGCACTCCAA+AGG 0.620049 tig0001375:+6396 None:intergenic
AGCTGATCTGATGCTACTGG+AGG 0.648548 tig0001375:+5743 None:intergenic
AAACCAGTATAGGCAAACAT+GGG 0.672240 tig0001375:-6481 Msa1337080:CDS
CAAGCAAGTCAGATCCACCA+AGG 0.717635 tig0001375:-7623 Msa1337080:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTATTTAAAAATTTA+GGG + tig0001375:10149-10168 None:intergenic 0.0%
!! TAAAAATTATTTAAAAATTT+AGG + tig0001375:10150-10169 None:intergenic 0.0%
!!! ATAAATTTCACATTTTTTTA+AGG - tig0001375:6510-6529 Msa1337080:CDS 10.0%
!!! TAAATTTCACATTTTTTTAA+GGG - tig0001375:6511-6530 Msa1337080:intron 10.0%
!! TAAATAAAATTAAGATAATG+AGG + tig0001375:7397-7416 None:intergenic 10.0%
!!! TATGAATTTTTTTTTTGAAA+AGG - tig0001375:9623-9642 Msa1337080:intron 10.0%
!!! AATTTTAAATAATCTTCATT+AGG + tig0001375:10226-10245 None:intergenic 10.0%
!!! TGAAGATTATTTAAAATTTT+AGG - tig0001375:10228-10247 Msa1337080:intron 10.0%
!!! GGTTTTAGAAATTATTATTT+TGG - tig0001375:6069-6088 Msa1337080:intron 15.0%
!!! TTTATTTTAATTTTCTGTGT+TGG - tig0001375:6108-6127 Msa1337080:intron 15.0%
!! ACATATATTCAAATAAATCA+AGG - tig0001375:6449-6468 Msa1337080:CDS 15.0%
!! ATGTGAAATTTATTTATTAG+TGG + tig0001375:6503-6522 None:intergenic 15.0%
!! GATATAGAAATACAAATATT+AGG + tig0001375:6659-6678 None:intergenic 15.0%
!! AAATTTCATTGAAAACAAAA+GGG + tig0001375:6772-6791 None:intergenic 15.0%
!! GAAAAAAGAAAAAAAAGAAA+TGG - tig0001375:7184-7203 Msa1337080:intron 15.0%
!!! ATTGACAAAAAATTTTTCTA+CGG + tig0001375:7230-7249 None:intergenic 15.0%
!!! TAGAAAAATTTTTTGTCAAT+GGG - tig0001375:7230-7249 Msa1337080:intron 15.0%
!! TTAATTAAAGTTGAAAGTTT+AGG + tig0001375:8850-8869 None:intergenic 15.0%
!! TTAAAATATTAATAGAGTCA+TGG - tig0001375:9235-9254 Msa1337080:intron 15.0%
!! AAAAATAGATTATATGTGTT+AGG + tig0001375:9448-9467 None:intergenic 15.0%
!!! TACTATTATGAATTGATTTA+TGG - tig0001375:9651-9670 Msa1337080:intron 15.0%
!!! TTTTTTAACTTTTAATTCAG+TGG + tig0001375:10042-10061 None:intergenic 15.0%
!! AAGTTAAAAAAAATTGTAGT+TGG - tig0001375:10051-10070 Msa1337080:intron 15.0%
!!! TTTGTTATTGATTTGTAATT+AGG - tig0001375:10094-10113 Msa1337080:intron 15.0%
!! ACAATTAAAATAATTAGTGT+AGG - tig0001375:10284-10303 Msa1337080:intron 15.0%
!! CAATTAAAATAATTAGTGTA+GGG - tig0001375:10285-10304 Msa1337080:intron 15.0%
!!! TTCTTTCTTTTTTTTCTTGA+AGG - tig0001375:6303-6322 Msa1337080:intron 20.0%
!! AAATATCTTTGCATTTAGAT+AGG - tig0001375:6571-6590 Msa1337080:intron 20.0%
!! TGAAGAGAAAAAAATAACTT+TGG + tig0001375:6709-6728 None:intergenic 20.0%
!! GAAATTTCATTGAAAACAAA+AGG + tig0001375:6773-6792 None:intergenic 20.0%
!!! GTAGAAAAATTTTTTGTCAA+TGG - tig0001375:7229-7248 Msa1337080:intron 20.0%
!! ATTAAACAAATACATCATGT+TGG + tig0001375:7324-7343 None:intergenic 20.0%
!! AATTTGCAATCAAGAAATTA+AGG - tig0001375:7341-7360 Msa1337080:intron 20.0%
!!! ATTGTTATTCATGAATTGAT+TGG - tig0001375:7537-7556 Msa1337080:intron 20.0%
!! TTCAAATTGCCTTATAATTA+GGG + tig0001375:7787-7806 None:intergenic 20.0%
!! ATATATGTGAAAAAATTCAG+AGG - tig0001375:8016-8035 Msa1337080:intron 20.0%
!! TGCTATATAACATTGAAAAT+AGG - tig0001375:8303-8322 Msa1337080:intron 20.0%
!! TAAAAGGACATAACTTATAT+GGG + tig0001375:8354-8373 None:intergenic 20.0%
!! ATAAAAGGACATAACTTATA+TGG + tig0001375:8355-8374 None:intergenic 20.0%
!! GTAATAATAAGCTATTCATA+AGG + tig0001375:9036-9055 None:intergenic 20.0%
!! TGATAATATCTGACATTATA+TGG - tig0001375:9319-9338 Msa1337080:intron 20.0%
!! TTGTTAAAGATGATTTGAAT+TGG - tig0001375:9968-9987 Msa1337080:intron 20.0%
!! TGTTAAAGATGATTTGAATT+GGG - tig0001375:9969-9988 Msa1337080:intron 20.0%
!! ACAAATCAATAACACATTTA+AGG + tig0001375:10079-10098 None:intergenic 20.0%
!!! ATAAAGTATTTAAAAGGTCA+AGG - tig0001375:10261-10280 Msa1337080:intron 20.0%
! TAAGAATAAGAAACATACCT+AGG + tig0001375:5868-5887 None:intergenic 25.0%
!! TTGGTATTATTTGAGGTTAA+TGG - tig0001375:6127-6146 Msa1337080:intron 25.0%
! CTATATCTCTAATTTCTGTT+TGG - tig0001375:6672-6691 Msa1337080:intron 25.0%
! ATGACTGAAAACTATCATAT+AGG + tig0001375:6959-6978 None:intergenic 25.0%
! AGGAAAAAGAACAAAAAGTA+AGG + tig0001375:6987-7006 None:intergenic 25.0%
! CTGAATTGGGATATATTTAA+TGG - tig0001375:7088-7107 Msa1337080:intron 25.0%
! TGTTAGAGCTAAAATGAAAA+AGG - tig0001375:7161-7180 Msa1337080:intron 25.0%
! GTTAGAGCTAAAATGAAAAA+GGG - tig0001375:7162-7181 Msa1337080:intron 25.0%
! CAATATATATCCCTACATTT+AGG + tig0001375:7299-7318 None:intergenic 25.0%
! CTAAATGTAGGGATATATAT+TGG - tig0001375:7297-7316 Msa1337080:intron 25.0%
! CTTCAAATTGCCTTATAATT+AGG + tig0001375:7788-7807 None:intergenic 25.0%
! TGCATAGAGGTTTATATTTA+GGG + tig0001375:7822-7841 None:intergenic 25.0%
! TTGCATAGAGGTTTATATTT+AGG + tig0001375:7823-7842 None:intergenic 25.0%
!! CACATAGCAAATTTTTACAA+TGG + tig0001375:7850-7869 None:intergenic 25.0%
!! AGATCAATTGGTAGTATAAA+GGG + tig0001375:7895-7914 None:intergenic 25.0%
!! AAGATCAATTGGTAGTATAA+AGG + tig0001375:7896-7915 None:intergenic 25.0%
! TTTATACTACCAATTGATCT+TGG - tig0001375:7895-7914 Msa1337080:intron 25.0%
!! TTTCATTTTCCAAGATCAAT+TGG + tig0001375:7907-7926 None:intergenic 25.0%
!! CATAAGCTAACAACATTTTA+TGG - tig0001375:8146-8165 Msa1337080:intron 25.0%
!!! TATTGACAAAAGTATTTGTG+AGG + tig0001375:8206-8225 None:intergenic 25.0%
! GAGATGTTGAAAAAAATATG+TGG + tig0001375:8250-8269 None:intergenic 25.0%
! ATTAACGACGTAATTAAAGA+CGG + tig0001375:8711-8730 None:intergenic 25.0%
!! TCACATTTTACTGTAACTTA+GGG + tig0001375:8923-8942 None:intergenic 25.0%
!! TTCACATTTTACTGTAACTT+AGG + tig0001375:8924-8943 None:intergenic 25.0%
!!! CATAGTTTTGATCTTGAAAA+TGG - tig0001375:8964-8983 Msa1337080:intron 25.0%
! TTGAGAGTAAACCATTAAAT+TGG - tig0001375:9058-9077 Msa1337080:intron 25.0%
!! GTTTGAAATATTAATAGAGC+CGG + tig0001375:9118-9137 None:intergenic 25.0%
! TTGTCAAAAGTTTCTCAATT+AGG - tig0001375:9150-9169 Msa1337080:intron 25.0%
!!! TATTTTGAAGATCAGCTAAT+TGG + tig0001375:9377-9396 None:intergenic 25.0%
! ATTAGCTGATCTTCAAAATA+AGG - tig0001375:9377-9396 Msa1337080:intron 25.0%
! GATCTTCAAAATAAGGTATA+TGG - tig0001375:9384-9403 Msa1337080:intron 25.0%
!!! ATAATCTATTTTTTTGCCAC+AGG - tig0001375:9455-9474 Msa1337080:intron 25.0%
! TAACCTACTCTTACAATATA+AGG - tig0001375:9689-9708 Msa1337080:intron 25.0%
! AGGACTTAATTAGTATGAAT+AGG + tig0001375:9734-9753 None:intergenic 25.0%
!! AATACTTTTCTATTGAAAGC+TGG - tig0001375:9773-9792 Msa1337080:intron 25.0%
! AAATCATCTTTAACAACAAC+AGG + tig0001375:9964-9983 None:intergenic 25.0%
!! TATTTGGGTTTGTAAATTCA+AGG + tig0001375:10180-10199 None:intergenic 25.0%
!!! AATGGTTTAGAATTTTTTGC+CGG + tig0001375:10503-10522 None:intergenic 25.0%
ACATTTGCAAAGAGAAGAAA+TGG - tig0001375:5742-5761 Msa1337080:CDS 30.0%
CTTATTATCTTCTCCAATAG+AGG - tig0001375:5817-5836 Msa1337080:intron 30.0%
! ATTTGAAGCTTGATTCTACT+TGG - tig0001375:6039-6058 Msa1337080:intron 30.0%
TTGATTCTACTTGGATTTGT+TGG - tig0001375:6048-6067 Msa1337080:intron 30.0%
! TTCTGTGTTGGTATTATTTG+AGG - tig0001375:6120-6139 Msa1337080:intron 30.0%
TGAAGTTATAGTACATGATC+TGG - tig0001375:6162-6181 Msa1337080:intron 30.0%
ATATGTAAATCTAGTACTGC+TGG + tig0001375:6435-6454 None:intergenic 30.0%
TTATTAGTGGTACTAAACTC+AGG + tig0001375:6490-6509 None:intergenic 30.0%
TTGCATTTAGATAGGACTTA+AGG - tig0001375:6579-6598 Msa1337080:intron 30.0%
TGTGTTAGAAACTCCAAAAT+TGG - tig0001375:6631-6650 Msa1337080:intron 30.0%
! CAAATATTAGGCTCCAATTT+TGG + tig0001375:6647-6666 None:intergenic 30.0%
TTTCATTGAAAACAAAAGGG+AGG + tig0001375:6769-6788 None:intergenic 30.0%
TACTCATTCTGTCATATTGA+AGG - tig0001375:7014-7033 Msa1337080:intron 30.0%
ACACATATATGTGCTGAATT+GGG - tig0001375:7075-7094 Msa1337080:intron 30.0%
! CTTAACATTTTCTTGTGCTT+TGG - tig0001375:7485-7504 Msa1337080:intron 30.0%
TTTATATACCTCAAGCTCTT+TGG + tig0001375:7654-7673 None:intergenic 30.0%
GGAGAATATGATAAACACTT+AGG + tig0001375:7758-7777 None:intergenic 30.0%
AGTTAGACATTAGTATACAG+AGG - tig0001375:7933-7952 Msa1337080:intron 30.0%
GTTAGACATTAGTATACAGA+GGG - tig0001375:7934-7953 Msa1337080:intron 30.0%
!!! TAGTATACAGAGGGTATTTT+AGG - tig0001375:7943-7962 Msa1337080:intron 30.0%
ATTCAGAGGTCCTTATAAAA+AGG - tig0001375:8030-8049 Msa1337080:intron 30.0%
TTCAGAGGTCCTTATAAAAA+GGG - tig0001375:8031-8050 Msa1337080:intron 30.0%
CAAGATTTGAATCTCTTCAA+AGG - tig0001375:8467-8486 Msa1337080:intron 30.0%
! GAAGTGTTTCATTAAGACTA+TGG - tig0001375:8554-8573 Msa1337080:intron 30.0%
!! AAAGACGGATTTTTATACCT+TGG + tig0001375:8696-8715 None:intergenic 30.0%
TAGAGACGGAAACATAAATT+TGG + tig0001375:8758-8777 None:intergenic 30.0%
GATATGACGAAAATTAGAGA+CGG + tig0001375:8772-8791 None:intergenic 30.0%
AAAGACAGAGACCAATTTAA+TGG + tig0001375:9072-9091 None:intergenic 30.0%
!! CGCATTTTTAAATTAGTCTC+CGG - tig0001375:9096-9115 Msa1337080:intron 30.0%
GTAAGAACAAACCACTAAAT+TGG + tig0001375:9293-9312 None:intergenic 30.0%
AAACAGATCTTTGTCTATGA+AGG - tig0001375:9497-9516 Msa1337080:intron 30.0%
ACCATGCATAAGAACAATAA+TGG + tig0001375:9545-9564 None:intergenic 30.0%
!! AGTAGGTTACTTTAGTCTTA+AGG + tig0001375:9678-9697 None:intergenic 30.0%
AGTCCTTATATTGTAAGAGT+AGG + tig0001375:9695-9714 None:intergenic 30.0%
TCAATTCAAGAAACCAGTAT+AGG - tig0001375:9808-9827 Msa1337080:intron 30.0%
! GCATATTTAGAATCACGATT+AGG - tig0001375:10382-10401 Msa1337080:intron 30.0%
!! CAAGTTAATGGATTTATTCC+TGG - tig0001375:10601-10620 Msa1337080:CDS 30.0%
!! TTAATGGATTTATTCCTGGA+TGG - tig0001375:10605-10624 Msa1337080:CDS 30.0%
GTACATGATCTGGTAAAGAT+TGG - tig0001375:6172-6191 Msa1337080:intron 35.0%
GACAGAATGAGTATCATAAC+AGG + tig0001375:7007-7026 None:intergenic 35.0%
CACACATATATGTGCTGAAT+TGG - tig0001375:7074-7093 Msa1337080:intron 35.0%
ATAACCATGCTCCTAAATGT+AGG - tig0001375:7285-7304 Msa1337080:intron 35.0%
TAACCATGCTCCTAAATGTA+GGG - tig0001375:7286-7305 Msa1337080:intron 35.0%
!! TGCTGATTCAAGGAAAACAA+AGG + tig0001375:7568-7587 None:intergenic 35.0%
TCCATTCGTCCCTAATTATA+AGG - tig0001375:7775-7794 Msa1337080:intron 35.0%
TACAATGGTAAGTTGCATAG+AGG + tig0001375:7835-7854 None:intergenic 35.0%
! TCATGTGTTCATTTTGTGTG+TGG + tig0001375:7974-7993 None:intergenic 35.0%
! TTCCTCCATCCCTTTTTATA+AGG + tig0001375:8043-8062 None:intergenic 35.0%
AATCTCTTCAAAGGACTCAA+AGG - tig0001375:8476-8495 Msa1337080:intron 35.0%
CAAGAAGGTTTCTGCAATTA+AGG + tig0001375:8589-8608 None:intergenic 35.0%
CTTAATTGCAGAAACCTTCT+TGG - tig0001375:8587-8606 Msa1337080:intron 35.0%
TCAAGATCTTTGGTACCTAA+TGG + tig0001375:8626-8645 None:intergenic 35.0%
!! GTCATATCAACGCTTTTTAG+TGG - tig0001375:8784-8803 Msa1337080:intron 35.0%
ACTTCAGACTAGGAGATATT+AGG + tig0001375:9011-9030 None:intergenic 35.0%
TCATAAGGAAACTTCAGACT+AGG + tig0001375:9021-9040 None:intergenic 35.0%
AAATTGGTCCATGTCTTTGT+AGG + tig0001375:9277-9296 None:intergenic 35.0%
AAAGACATGGACCAATTTAG+TGG - tig0001375:9279-9298 Msa1337080:intron 35.0%
TAATTGGTCCAGCATGAATT+GGG + tig0001375:9361-9380 None:intergenic 35.0%
AACAATAATGGCATGGATGA+TGG + tig0001375:9533-9552 None:intergenic 35.0%
GCATAAGAACAATAATGGCA+TGG + tig0001375:9540-9559 None:intergenic 35.0%
GCCATTATTGTTCTTATGCA+TGG - tig0001375:9541-9560 Msa1337080:intron 35.0%
! GTGTACTTGTCTAAAGTACT+TGG - tig0001375:9584-9603 Msa1337080:intron 35.0%
TCAATCAAATCATCAGCACA+AGG + tig0001375:9754-9773 None:intergenic 35.0%
AAACCAGTATAGGCAAACAT+GGG - tig0001375:9818-9837 Msa1337080:intron 35.0%
TATTACCCTATCTGCAATGT+TGG + tig0001375:9921-9940 None:intergenic 35.0%
CGATTAGGTTTGACAAAATC+AGG - tig0001375:10397-10416 Msa1337080:intron 35.0%
TTAGGTTTGACAAAATCAGG+TGG - tig0001375:10400-10419 Msa1337080:intron 35.0%
ACTCAAGCTCAACAAGTTAA+TGG - tig0001375:10589-10608 Msa1337080:CDS 35.0%
GAGGAAGAGTGGAATTGAAA+AGG - tig0001375:5692-5711 Msa1337080:CDS 40.0%
CTCATAAAGCTTGCCTCTAT+TGG + tig0001375:5833-5852 None:intergenic 40.0%
!! ATGAGTTTTGTAGCAGTCCT+AGG - tig0001375:5848-5867 Msa1337080:intron 40.0%
GGGTAAAGAGGTAGCATATT+AGG + tig0001375:6740-6759 None:intergenic 40.0%
AAAGAAATGGCCTCACAACA+TGG - tig0001375:7197-7216 Msa1337080:intron 40.0%
CGGTTAAATTCCATGTTGTG+AGG + tig0001375:7210-7229 None:intergenic 40.0%
TATCCCTACATTTAGGAGCA+TGG + tig0001375:7292-7311 None:intergenic 40.0%
!!! GTTTTGAGCATGCTGATTCA+AGG + tig0001375:7578-7597 None:intergenic 40.0%
GCCTTATAATTAGGGACGAA+TGG + tig0001375:7779-7798 None:intergenic 40.0%
GAGGTCCTTATAAAAAGGGA+TGG - tig0001375:8035-8054 Msa1337080:intron 40.0%
GTCCTTATAAAAAGGGATGG+AGG - tig0001375:8038-8057 Msa1337080:intron 40.0%
CTTTCAGCTTCAAGTACTCA+CGG + tig0001375:8447-8466 None:intergenic 40.0%
AACCTTCTTGGTGAAGACTT+AGG - tig0001375:8599-8618 Msa1337080:intron 40.0%
TTCAAGCTGCTCAAGATCTT+TGG + tig0001375:8636-8655 None:intergenic 40.0%
GCTTGAGAGAAGAATCAAGT+TGG + tig0001375:8661-8680 None:intergenic 40.0%
!! GACGGATTTTTATACCTTGG+TGG + tig0001375:8693-8712 None:intergenic 40.0%
GAGAATGACCTACAAAGACA+TGG - tig0001375:9266-9285 Msa1337080:intron 40.0%
CATGAATTGGGTCTGCAAAT+TGG + tig0001375:9349-9368 None:intergenic 40.0%
CTAATTGGTCCAGCATGAAT+TGG + tig0001375:9362-9381 None:intergenic 40.0%
GAAACCAGTATAGGCAAACA+TGG - tig0001375:9817-9836 Msa1337080:intron 40.0%
GGTGATCAAAGTATGGCATA+TGG - tig0001375:9846-9865 Msa1337080:intron 40.0%
ACAAAGCTTCTTTCAGCCTT+TGG - tig0001375:9887-9906 Msa1337080:intron 40.0%
AATGTTGGATTGCACTCCAA+AGG + tig0001375:9906-9925 None:intergenic 40.0%
TGCAATCCAACATTGCAGAT+AGG - tig0001375:9912-9931 Msa1337080:intron 40.0%
GCAATCCAACATTGCAGATA+GGG - tig0001375:9913-9932 Msa1337080:intron 40.0%
AAACCATTGTTCCTTGATGC+AGG - tig0001375:10515-10534 Msa1337080:CDS 40.0%
TGAAAACAAAAGGGAGGCCT+GGG + tig0001375:6763-6782 None:intergenic 45.0%
TTGAAAACAAAAGGGAGGCC+TGG + tig0001375:6764-6783 None:intergenic 45.0%
GCATGCTCAAAACGCTTGAT+AGG - tig0001375:7585-7604 Msa1337080:intron 45.0%
! AGGTACCAAAAGTGCAGCTA+TGG - tig0001375:7605-7624 Msa1337080:intron 45.0%
TATACCTCAAGCTCTTTGGC+AGG + tig0001375:7650-7669 None:intergenic 45.0%
GACCTAAGTCTTCACCAAGA+AGG + tig0001375:8604-8623 None:intergenic 45.0%
GGTGAAGACTTAGGTCCATT+AGG - tig0001375:8608-8627 Msa1337080:intron 45.0%
TCTGTCTTTGTCGCATGACA+AGG - tig0001375:9173-9192 Msa1337080:intron 45.0%
CTGTCTTTGTCGCATGACAA+GGG - tig0001375:9174-9193 Msa1337080:intron 45.0%
TTTGCAGACCCAATTCATGC+TGG - tig0001375:9350-9369 Msa1337080:intron 45.0%
! TTTGCCACAGGAGCATATGT+TGG - tig0001375:9467-9486 Msa1337080:intron 45.0%
TCTACCAACATATGCTCCTG+TGG + tig0001375:9474-9493 None:intergenic 45.0%
CTTCCCATGTTTGCCTATAC+TGG + tig0001375:9824-9843 None:intergenic 45.0%
TATAGGCAAACATGGGAAGC+TGG - tig0001375:9825-9844 Msa1337080:intron 45.0%
GGAAGCTGGTGATCAAAGTA+TGG - tig0001375:9839-9858 Msa1337080:intron 45.0%
GCCAAAATCACAGTGACTCA+CGG - tig0001375:10460-10479 Msa1337080:CDS 45.0%
AGTCCTGCATCAAGGAACAA+TGG + tig0001375:10521-10540 None:intergenic 45.0%
CTGTAATCAGTCCTGCATCA+AGG + tig0001375:10529-10548 None:intergenic 45.0%
CTTGATGCAGGACTGATTAC+AGG - tig0001375:10527-10546 Msa1337080:CDS 45.0%
GTTAGCTGATCTGATGCTAC+TGG + tig0001375:10562-10581 None:intergenic 45.0%
!!! TTTTAATATATTTTTTTTTG+TGG - tig0001375:5919-5938 Msa1337080:intron 5.0%
!!! TGATTTTTTATTTTTTTTTT+TGG - tig0001375:5987-6006 Msa1337080:intron 5.0%
!! TTAACAAAAAATATAATAAA+AGG + tig0001375:8370-8389 None:intergenic 5.0%
!!! TTTTTAAATAATTTTTAACT+AGG - tig0001375:10153-10172 Msa1337080:intron 5.0%
!!! ATTTTAAATAATTTGTATTT+GGG + tig0001375:10195-10214 None:intergenic 5.0%
!!! AATTTTAAATAATTTGTATT+TGG + tig0001375:10196-10215 None:intergenic 5.0%
!!! ACAAATTATTTAAAATTTAA+AGG - tig0001375:10199-10218 Msa1337080:intron 5.0%
!!! AAAATTATAAAGTATTTAAA+AGG - tig0001375:10255-10274 Msa1337080:intron 5.0%
AAAACAAAAGGGAGGCCTGG+GGG + tig0001375:6761-6780 None:intergenic 50.0%
GAAAACAAAAGGGAGGCCTG+GGG + tig0001375:6762-6781 None:intergenic 50.0%
! CTGCACCATAGCTGCACTTT+TGG + tig0001375:7613-7632 None:intergenic 50.0%
CAAACCTGCCAAAGAGCTTG+AGG - tig0001375:7643-7662 Msa1337080:CDS 50.0%
CAAGCAAGTCAGATCCACCA+AGG - tig0001375:8676-8695 Msa1337080:CDS 50.0%
! GCCGTGAGTCACTGTGATTT+TGG + tig0001375:10464-10483 None:intergenic 50.0%
! ACAGTGACTCACGGCGATTT+TGG - tig0001375:10469-10488 Msa1337080:CDS 50.0%
AGCTGATCTGATGCTACTGG+AGG + tig0001375:10559-10578 None:intergenic 50.0%
ATGCTACCTCTTTACCCCCC+AGG - tig0001375:6743-6762 Msa1337080:intron 55.0%
AAACAAAAGGGAGGCCTGGG+GGG + tig0001375:6760-6779 None:intergenic 55.0%
!!! GGCGATTTTGGCTAACTCGC+CGG - tig0001375:10481-10500 Msa1337080:CDS 55.0%
GGGAGGCCTGGGGGGTAAAG+AGG + tig0001375:6752-6771 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0001375 gene 5685 10636 5685 ID=Msa1337080;Name=Msa1337080
tig0001375 mRNA 5685 10636 5685 ID=Msa1337080-mRNA-1;Parent=Msa1337080;Name=Msa1337080-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|8|0|250
tig0001375 exon 10452 10636 10452 ID=Msa1337080-mRNA-1:exon:997;Parent=Msa1337080-mRNA-1
tig0001375 exon 8657 8735 8657 ID=Msa1337080-mRNA-1:exon:996;Parent=Msa1337080-mRNA-1
tig0001375 exon 7824 7885 7824 ID=Msa1337080-mRNA-1:exon:995;Parent=Msa1337080-mRNA-1
tig0001375 exon 7624 7723 7624 ID=Msa1337080-mRNA-1:exon:994;Parent=Msa1337080-mRNA-1
tig0001375 exon 6923 6964 6923 ID=Msa1337080-mRNA-1:exon:993;Parent=Msa1337080-mRNA-1
tig0001375 exon 6803 6844 6803 ID=Msa1337080-mRNA-1:exon:992;Parent=Msa1337080-mRNA-1
tig0001375 exon 6387 6529 6387 ID=Msa1337080-mRNA-1:exon:991;Parent=Msa1337080-mRNA-1
tig0001375 exon 5685 5784 5685 ID=Msa1337080-mRNA-1:exon:990;Parent=Msa1337080-mRNA-1
tig0001375 CDS 10452 10636 10452 ID=Msa1337080-mRNA-1:cds;Parent=Msa1337080-mRNA-1
tig0001375 CDS 8657 8735 8657 ID=Msa1337080-mRNA-1:cds;Parent=Msa1337080-mRNA-1
tig0001375 CDS 7824 7885 7824 ID=Msa1337080-mRNA-1:cds;Parent=Msa1337080-mRNA-1
tig0001375 CDS 7624 7723 7624 ID=Msa1337080-mRNA-1:cds;Parent=Msa1337080-mRNA-1
tig0001375 CDS 6923 6964 6923 ID=Msa1337080-mRNA-1:cds;Parent=Msa1337080-mRNA-1
tig0001375 CDS 6803 6844 6803 ID=Msa1337080-mRNA-1:cds;Parent=Msa1337080-mRNA-1
tig0001375 CDS 6387 6529 6387 ID=Msa1337080-mRNA-1:cds;Parent=Msa1337080-mRNA-1
tig0001375 CDS 5685 5784 5685 ID=Msa1337080-mRNA-1:cds;Parent=Msa1337080-mRNA-1
Gene Sequence

>Msa1337080

ATGGGAAGAGGAAGAGTGGAATTGAAAAGGATAGAGAATAAGATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCTCTTATTATCTTCTCCAATAGAGGCAAGCTTTATGAGTTTTGTAGCAGTCCTAGCATGCTCAAAACGCTTGATAGGTACCAAAAGTGCAGCTATGGTGCAGTAGAAGTTAACAAACCTGCCAAAGAGCTTGAGAGCAGTTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAAAGAAACCTTCTTGGTGAAGACTTAGGTCCATTAGGTACCAAAGATCTTGAGCAGCTTGAACGCCAACTTGATTCTTCTCTCAAGCAAGTCAGATCCACCAAGACCCAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAGCATATGTTGGTAGAAGCAAACAGATCTTTGTCTATGAAGCTGGAAGAAATCAATATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGGCATATGGTAATCAAAATGCTCACTCACAAAGCTTCTTTCAGCCTTTGGAGTGCAATCCAACATTGCAGATAGGGACTGATTACAGGTACAGTCCTCCAGTAGCATCAGATCAGCTAACTGCAACAACTCAAGCTCAACAAGTTAATGGATTTATTCCTGGATGGATGCTTTGA
Protein sequence

>Msa1337080

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSMLKTLDRYQKCSYGAVEVNKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLSMKLEEININSRNQYRQTWEAGDQSMAYGNQNAHSQSFFQPLECNPTLQIGTDYRYSPPVASDQLTATTQAQQVNGFIPGWML*