AlfalfaGEDB | Msa1337330

M. sativa cultivar zhongmu-4 / Msa1337330

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060860 GO:0060862 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337330	XP_003610140.2	97.633	169	4	0	1	169	1	169	5.43e-117	338

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337330	sp\|Q39261\|ZFP2_ARATH	48.851	174	57	8	3	169	2	150	5.99e-29	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337330	G7JVH8	97.633	169	4	0	1	169	1	169	2.59e-117	338

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TFs/TRs:

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Gene ID	Type	Classification
Msa1337330	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337330	MtrunA17_Chr4g0072571	97.633	169	4	0	1	169	1	169	5.00e-121	338
Msa1337330	MtrunA17_Chr8g0376021	41.803	122	49	3	18	120	18	136	5.92e-20	82.8
Msa1337330	MtrunA17_Chr1g0161901	41.176	119	58	3	28	136	80	196	1.82e-18	79.7
Msa1337330	MtrunA17_Chr2g0333741	40.146	137	42	4	8	105	17	152	2.07e-18	79.3
Msa1337330	MtrunA17_Chr5g0434121	66.667	57	16	1	45	98	87	143	1.17e-17	77.0
Msa1337330	MtrunA17_Chr3g0110091	64.286	56	19	1	44	99	85	139	3.00e-17	76.3
Msa1337330	MtrunA17_Chr1g0149811	53.623	69	30	1	23	89	70	138	9.49e-17	75.1
Msa1337330	MtrunA17_Chr4g0001081	72.727	44	12	0	42	85	64	107	3.37e-16	73.2
Msa1337330	MtrunA17_Chr3g0137111	47.674	86	33	2	7	80	22	107	3.51e-16	73.2
Msa1337330	MtrunA17_Chr7g0254221	74.286	35	9	0	45	79	33	67	4.96e-13	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337330	AT5G57520.1	48.851	174	57	8	3	169	2	150	6.09e-30	107
Msa1337330	AT5G25160.1	45.455	132	54	7	21	147	34	152	7.55e-22	88.6
Msa1337330	AT5G10970.1	44.094	127	58	4	23	147	78	193	8.44e-21	86.7
Msa1337330	AT1G24625.1	53.425	73	29	2	12	82	25	94	2.54e-18	79.0
Msa1337330	AT1G66140.1	75.556	45	11	0	41	85	79	123	1.07e-17	78.2
Msa1337330	AT1G80730.1	55.556	72	28	1	45	112	66	137	1.03e-16	74.7
Msa1337330	AT5G01860.1	40.000	80	40	2	14	93	38	109	2.15e-13	65.9
Msa1337330	AT5G14010.1	31.783	129	81	2	45	169	36	161	2.35e-12	62.0

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Find 36 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTCACAAGCTTGAA+AGG	0.509103	tig0001526:+42040	Msa1337330:CDS
AAGGTGTGACTTCTTGGTCA+AGG	0.556847	tig0001526:+42262	Msa1337330:CDS
AATTACCATCTTGGAAGTCA+TGG	0.516260	tig0001526:+42150	Msa1337330:CDS
AATTAGTAGAGAAGTTTGAA+GGG	0.551396	tig0001526:-42131	None:intergenic
AGAAAAGATCAGTTTAGTTA+TGG	0.369153	tig0001526:+42228	Msa1337330:CDS
AGCATAAGAAGATTGCATGG+CGG	0.769594	tig0001526:-42094	None:intergenic
AGGTGTGACTTCTTGGTCAA+GGG	0.515201	tig0001526:+42263	Msa1337330:CDS
AGTTATGGAAATTCTAAGGA+AGG	0.495820	tig0001526:+42243	Msa1337330:CDS
ATAGACAAGGTCATGTGATG+AGG	0.622400	tig0001526:+42196	Msa1337330:CDS
ATCATCATCATCTTCATCTA+TGG	0.308958	tig0001526:+41948	Msa1337330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATATTCTCATTATCTGGT+TGG	-	tig0001526:41885-41904	None:intergenic	30.0%
ATCATCATCATCTTCATCTA+TGG	+	tig0001526:41948-41967	Msa1337330:CDS	30.0%
TTCTCTACTAATTACCATCT+TGG	+	tig0001526:42141-42160	Msa1337330:CDS	30.0%
AAAATGCTCACAAGCTTGAA+AGG	+	tig0001526:42040-42059	Msa1337330:CDS	35.0%
TTCAGCATAAGAAGATTGCA+TGG	-	tig0001526:42100-42119	None:intergenic	35.0%
AATTACCATCTTGGAAGTCA+TGG	+	tig0001526:42150-42169	Msa1337330:CDS	35.0%
CATCTTCATCTATGGAGCAA+AGG	+	tig0001526:41956-41975	Msa1337330:CDS	40.0%
GACACTTGCAAAGAAGAGTA+GGG	+	tig0001526:42062-42081	Msa1337330:CDS	40.0%
AGCATAAGAAGATTGCATGG+CGG	-	tig0001526:42097-42116	None:intergenic	40.0%
CATTTCCATGACTTCCAAGA+TGG	-	tig0001526:42158-42177	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0001526	gene	41844	42353	41844	ID=Msa1337330;Name=Msa1337330
tig0001526	mRNA	41844	42353	41844	ID=Msa1337330-mRNA-1;Parent=Msa1337330;Name=Msa1337330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|169
tig0001526	exon	41844	42353	41844	ID=Msa1337330-mRNA-1:exon:1082;Parent=Msa1337330-mRNA-1
tig0001526	CDS	41844	42353	41844	ID=Msa1337330-mRNA-1:cds;Parent=Msa1337330-mRNA-1

Gene Sequence

>Msa1337330

ATGAATAATTTTCATCCTAATACTTTTCTTCACTTAAACCAACCAGATAATGAGAATATTCATCATCTGAATCTAGATCTTGTTCTTGAACCATCTTCTTCTTCATCATCATCATCTTCATCTATGGAGCAAAGGATATTCTCATGCAATTATTGTCAGAGAAAGTTTTATAGCTCTCAAGCTTTGGGAGGACACCAAAATGCTCACAAGCTTGAAAGGACACTTGCAAAGAAGAGTAGGGAGATGAGTTCCGCCATGCAATCTTCTTATGCTGAATTACCAGAACACCCTTCAAACTTCTCTACTAATTACCATCTTGGAAGTCATGGAAATGCTCATCTTGACAACAACCATAGACAAGGTCATGTGATGAGGCATGGTGGAAGAAAAGATCAGTTTAGTTATGGAAATTCTAAGGAAGGTGTGACTTCTTGGTCAAGGGGTTATAATAGTACTTCTGAAAATGTTCAGGAGGATATTAGCCAACTTGATTTGTCCTTAAGGCTCTGA

Protein sequence

>Msa1337330

MNNFHPNTFLHLNQPDNENIHHLNLDLVLEPSSSSSSSSSSMEQRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSAMQSSYAELPEHPSNFSTNYHLGSHGNAHLDNNHRQGHVMRHGGRKDQFSYGNSKEGVTSWSRGYNSTSENVQEDISQLDLSLRL*